RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10967
(199 letters)
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt,
transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Length = 339
Score = 109 bits (274), Expect = 3e-29
Identities = 42/88 (47%), Positives = 55/88 (62%)
Query: 109 HLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDL 168
++ + K Y DPGV+SV KIY+YYK+ GY T VM ASFRN E+ ALAG D
Sbjct: 194 RIMDFYKALSGKDYTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDN 253
Query: 169 MTIGPKLLEELENSTTPVDQMLSEKSGK 196
MT+ LLE+L ST P++ L+ +S K
Sbjct: 254 MTLPLNLLEQLYESTDPIENKLNSESAK 281
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt,
transferase; 1.40A {Escherichia coli} PDB: 3kof_A
1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Length = 337
Score = 106 bits (267), Expect = 3e-28
Identities = 53/84 (63%), Positives = 63/84 (75%)
Query: 108 KHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCD 167
+ L Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD
Sbjct: 201 RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD 260
Query: 168 LMTIGPKLLEELENSTTPVDQMLS 191
+TI P LL+EL S +++ LS
Sbjct: 261 RLTIAPTLLKELAESEGAIERKLS 284
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 106 bits (266), Expect = 4e-28
Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
+VANT K+Y P DPGV SVTKIYNYYKKFGYKT+VMGASFRNTGEI ALAGCD +TI
Sbjct: 194 HVANTDKKSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTIS 253
Query: 173 PKLLEELENSTTPVDQMLSEKSGK 196
PKLL EL + + LS K+ +
Sbjct: 254 PKLLGELLKDNSKLAPALSVKAAQ 277
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural
genomics, PSI-2, protein structure initiative; 2.79A
{Oleispira antarctica}
Length = 329
Score = 104 bits (261), Expect = 3e-27
Identities = 51/84 (60%), Positives = 65/84 (77%)
Query: 108 KHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCD 167
+ L Y AN+G Y+ +EDPGVVSVT+IYN+YK G+KT+VMGASFRNTGEI LAGCD
Sbjct: 189 RILDWYKANSGQSEYSASEDPGVVSVTEIYNFYKSHGFKTIVMGASFRNTGEIEELAGCD 248
Query: 168 LMTIGPKLLEELENSTTPVDQMLS 191
+TI P+LL +LE T+P++Q L
Sbjct: 249 RLTISPELLAQLEADTSPLEQKLF 272
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE;
1.90A {Prochlorococcus marinus str}
Length = 334
Score = 104 bits (260), Expect = 3e-27
Identities = 43/79 (54%), Positives = 55/79 (69%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
+ A TG ++ EDPGV+SVT+IY Y+K+ G+KT VMGASFRN EI LAGCDL+TI
Sbjct: 190 HKAKTGKTSFIGAEDPGVISVTQIYKYFKEKGFKTEVMGASFRNLDEIKELAGCDLLTIA 249
Query: 173 PKLLEELENSTTPVDQMLS 191
PK LEEL+ + + L
Sbjct: 250 PKFLEELKREKGVLIRKLD 268
>3tkf_A Transaldolase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta barrel/TIM barrel;
HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB:
3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Length = 345
Score = 103 bits (258), Expect = 8e-27
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 109 HLVRYVANTGTKTY-APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCD 167
+ KT+ A +D GV SV IY YK G+KT+VMGASFRN +++ALAGCD
Sbjct: 209 ITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCD 268
Query: 168 LMTIGPKLLEELENSTTPVDQMLS 191
+TI P LLEEL+N ++ L+
Sbjct: 269 ALTISPVLLEELKNRDEHLEVKLT 292
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 69.8 bits (171), Expect = 1e-14
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 17/99 (17%)
Query: 112 RYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF----------------GYKTVVMGASFR 155
R A + A GV + + Y YK+ T V ++
Sbjct: 213 RLEAIGSDEALALRGKAGVANAQRAYAVYKELFDAAELPEGANTQRPLWASTGVKNPAYA 272
Query: 156 NTGEILALAGCD-LMTIGPKLLEELENSTTPVDQMLSEK 193
T + LAG + + T+ ++ + LS
Sbjct: 273 ATLYVSELAGPNTVNTMPEGTIDAVLEQGNLHGDTLSNS 311
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 61.0 bits (148), Expect = 2e-11
Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 20/91 (21%)
Query: 123 APTEDPGVVSVTKIYNYYKKFGY--------------------KTVVMGASFRNTGEILA 162
+ Y ++++ T V ++ +T + +
Sbjct: 217 RLKGKTAIALAKAAYQDWEQYFTAPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDS 276
Query: 163 LAGCDLMTIGPKLLEELENSTTPVDQMLSEK 193
L G + P + L+E
Sbjct: 277 LIGVHTVNTVPDATLKAFIDHGTAKATLTES 307
>1wx0_A Transaldolase; structural genomics, riken structural
genomics/proteomics initiative, RSGI, transferas; 2.27A
{Thermus thermophilus HB8} SCOP: c.1.10.1
Length = 223
Score = 54.2 bits (131), Expect = 2e-09
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 181
G + +I + V+ AS R+ + AL G D+ T+ + ++L
Sbjct: 149 GGELLREIVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQLLK 203
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
JOI for structural genomics, JCSG; HET: GOL; 2.40A
{Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 54.1 bits (131), Expect = 2e-09
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 181
G+ + +I Y +G++T ++ AS R+ ++ AL G D++T+ +LE+L
Sbjct: 152 GMRMLGEIVEIYNNYGFETEIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKLFK 206
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
selection, domain swapping transferase; HET: I22; 1.65A
{Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
3s1w_A*
Length = 223
Score = 53.8 bits (130), Expect = 3e-09
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 181
G+ + I + + KT ++ AS RN +L A+ G D++T+ +L+ L
Sbjct: 143 GMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMK 197
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 53.7 bits (130), Expect = 3e-09
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 181
G+ ++++ + G T ++ AS R+ + AL G + T+ K++ L
Sbjct: 141 GLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTK 195
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Length = 220
Score = 53.1 bits (128), Expect = 5e-09
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 181
G+ +VT ++ K + V+ ASF+ + L LAGC+ +T+ + +++ +
Sbjct: 142 GIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMIS 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 86/221 (38%)
Query: 25 KSVGIFL-----GNDSEYSDERNLQDL----KEKVLQLQRESEEKNKIIENLRNEINAIK 75
+ + GN +Y +E L+DL V L + S E + E +R ++A K
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEE--LRDLYQTYHVLVGDLIKFSAE--TLSELIRTTLDAEK 207
Query: 76 QNRHVSYATKATQTEDYLDVYN--NNADGQ-DENAKHLVRYVANTGTKTYAPTEDPGVVS 132
L++ N D++ Y+ P P +
Sbjct: 208 VFTQG------------LNILEWLENPSNTPDKD------YLL------SIPISCPLIG- 242
Query: 133 VTKIYNYY---KKFGY----------------KTVVMGA---------SFRNTG----EI 160
V ++ +Y K G+ + +V SF + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 161 LALAGC------DLMTIGPKLLEEL----ENSTTPVDQMLS 191
L G ++ P +LE+ E +P MLS
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP---MLS 340
Score = 31.6 bits (71), Expect = 0.17
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 16/69 (23%)
Query: 86 ATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY 145
+T +++ N N + Q +YVA G + +VT + N+ K
Sbjct: 1834 GKRTGWLVEIVNYNVENQ--------QYVA-AGDL-------RALDTVTNVLNFIKLQKI 1877
Query: 146 KTVVMGASF 154
+ + S
Sbjct: 1878 DIIELQKSL 1886
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.005
Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 35/166 (21%)
Query: 28 GIF---LGN-DSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYA 83
IF L N +S + LQ L + Q+ ++ N++ I++I+ +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRL 237
Query: 84 TKATQTEDYL----DVYNNN-ADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYN 138
K+ E+ L +V N + + + K L+ T T V
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-----T-------TRFKQVTDFLSA-A 284
Query: 139 YYKKFGYKTVVMGASFRNTGEILAL-AGC---DL----MTIGPKLL 176
M + +L C DL +T P+ L
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Score = 34.4 bits (78), Expect = 0.024
Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 24/103 (23%)
Query: 17 NLSCKYL----PKSVGIFLGNDSEYS----------DERNLQDLKEKVL-----QLQRES 57
NLSCK L K V FL + ++ L K L L RE
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 58 EEKN----KII-ENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
N II E++R+ + +HV+ T E L+V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Score = 34.4 bits (78), Expect = 0.024
Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 26/195 (13%)
Query: 17 NLSCKYLPKSV-GIFLGNDSEYSDERNLQDLKEKVLQL------QRESEEKNKIIENLRN 69
N CK + I + E +D L+L ++E + + E LR
Sbjct: 32 NFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 70 EINAIKQNRHVSYATKATQTEDYLDVYNNNADGQDENAKHLV---RYVANTGTKTYAPTE 126
+ + T Y++ + + AK+ V +
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDL--MTIG----PK-LLEEL 179
V+ I G KT V + ++ + + + P+ +LE L
Sbjct: 150 AKNVL----IDG-VLGSG-KTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 180 ENSTTPVDQMLSEKS 194
+ +D + +S
Sbjct: 203 QKLLYQIDPNWTSRS 217
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 31.1 bits (70), Expect = 0.12
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 33 NDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQ 88
D Y D N+Q +K L+ E + K++++ L H A + T+
Sbjct: 80 TDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGH--SAHEETK 133
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 31.0 bits (70), Expect = 0.13
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 33 NDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQ 88
+D Y D NLQ +K + E + + I L N + H +A++ +
Sbjct: 70 SDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGH--FASETIR 123
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 30.9 bits (70), Expect = 0.24
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 38 SDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQN 77
S ++ +Q + E+V L++ + I+ L +Q
Sbjct: 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQF 41
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex,
transcription/DNA complex; 2.20A {Homo sapiens} SCOP:
h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 28.5 bits (64), Expect = 0.28
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
+ L+EKV L+ ++ E LR ++ +KQ
Sbjct: 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A
{Artificial gene}
Length = 52
Score = 28.2 bits (62), Expect = 0.31
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 41 RNLQDLKEKVLQLQRESEEKNKIIENLRNEI 71
+ + LK+ LQL+R+ + KII NLR+EI
Sbjct: 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEI 40
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.37
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 17/67 (25%)
Query: 40 ERNLQDLKEKVLQLQRESEEK-NKIIENLRNEIN------------AIKQNRHVSYATKA 86
E + L+E S+ + E + ++ NR A
Sbjct: 92 EEQRKRLQEL----DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 87 TQTEDYL 93
D +
Sbjct: 148 QPDADII 154
Score = 29.0 bits (64), Expect = 0.74
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 34 DSEYSDERNLQDLKEKVLQ-----LQRESEEKNKIIENLRNEINAIKQNR 78
D+ + Q+ +EK + QR+SE+ K N R A Q
Sbjct: 102 DAA--SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 28.4 bits (63), Expect = 0.45
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 41 RNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
+ + KVL+L E+E K +E L E++ ++
Sbjct: 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo
sapiens} SCOP: h.1.3.1
Length = 61
Score = 27.7 bits (62), Expect = 0.60
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
+Q L++K L + + + LRNE+ +KQ
Sbjct: 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57
Score = 24.2 bits (53), Expect = 9.5
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 47 KEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
K V L++++E+ + + L++E+ ++
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil,
structural genomics, berkeley S genomics center, BSGC,
dimerization; HET: MSE; 2.27A {Homo sapiens}
Length = 72
Score = 27.8 bits (61), Expect = 0.63
Identities = 10/46 (21%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 34 DSEYSDERNLQDLKEK---VLQLQRESEEKNKIIENLRNEINAIKQ 76
D +Y+ + +++L+++ + +L+ E ++K+++I+ L+NE++ +
Sbjct: 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.78
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 103 QDENAKHLVRYVANTGTKTYAPTEDPGV-VSVT 134
+ + K L K YA P + + T
Sbjct: 18 EKQALKKL-----QASLKLYADDSAPALAIKAT 45
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA,
protein-DNA complex, transcription factor, BZIP, C/EBP;
1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A
1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B
1nwq_A
Length = 78
Score = 27.6 bits (61), Expect = 0.82
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 41 RNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
+ + KVL+L E+E K +E L E++ ++
Sbjct: 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 27.3 bits (60), Expect = 0.86
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 40 ERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
E +L+ L+ +V+ L+ + LR ++ +++
Sbjct: 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 27.1 bits (60), Expect = 0.97
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
L+ + QL+ E I NL E ++
Sbjct: 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 28.9 bits (65), Expect = 1.2
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 98 NNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNT 157
N+ + + + A + + V+ V + Y K G +
Sbjct: 183 NDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITGSRF 242
Query: 158 G 158
G
Sbjct: 243 G 243
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 27.5 bits (61), Expect = 2.6
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 38 SDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLD 94
D +Q+L++K +L+ E I+ + + + + + + + L
Sbjct: 139 RDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG----KEEIQQRLA 191
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A
{Homo sapiens} PDB: 2qa7_A
Length = 120
Score = 26.2 bits (57), Expect = 4.9
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 39 DERNLQDLKEKVLQLQRESEEKNKII-------ENLRNEINAIKQNRHVSYATKATQTE 90
+R + LK V +L+ + E+ + E LR E++ +++ R + + + +E
Sbjct: 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSE 96
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.65A {Thermobifida fusca}
Length = 213
Score = 26.3 bits (58), Expect = 5.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 120 KTYAPTEDPGVVSVTKIYN 138
+ P DP + S+ +Y
Sbjct: 170 EVSCPDSDPHIPSIVSVYP 188
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 26.1 bits (58), Expect = 6.2
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 44 QDLKEKVLQLQRESEEKNKIIENLRNEINAIK 75
L + V + E +++ K IE L++ I +
Sbjct: 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia
coli} PDB: 2wz7_A
Length = 83
Score = 25.3 bits (55), Expect = 6.6
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 40 ERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDVYNNN 99
ER + + QLQ++ + I++LR + I++N++ Q + L + + +
Sbjct: 12 ERISNAHSQLLTQLQQQLSDNQSDIDSLRGQ---IQENQYQLNQVVERQKQILLQIDSLS 68
Query: 100 ADGQDENAKH 109
+ G +H
Sbjct: 69 SGGAAAQLEH 78
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 25.0 bits (55), Expect = 8.6
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
L+ +L +Q E ++ + LR +K
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKH 80
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 26.1 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 144 GYKTVVMGASFRNTGEILALAGCDL 168
G KT + A +N G+I A DL
Sbjct: 114 GNKTSHLAALLKNQGKIFA---FDL 135
>3lop_A Substrate binding periplasmic protein; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.55A
{Ralstonia solanacearum}
Length = 364
Score = 26.2 bits (58), Expect = 9.4
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 26/100 (26%)
Query: 95 VYNNNADGQDENAKHLVRYVANTGTK-----TYAPTE-------------DPGVV----- 131
+Y +A G++ + R + +Y D +
Sbjct: 147 LYQEDALGKE-AITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGAT 205
Query: 132 --SVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLM 169
+ Y+ G + ++G S + G + +AG D +
Sbjct: 206 AEPAAQFVRQYRARGGEAQLLGLSSIDPGILQKVAGLDAV 245
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 26.2 bits (58), Expect = 9.4
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 13/112 (11%)
Query: 39 DERNLQDLKEKVLQLQRESEEKNKIIE-NLRNEINAIKQNRHVSYATKATQTEDYL---D 94
D+R L+ + ++ Q +++ E+ +I+E L + I A+ V D
Sbjct: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001
Query: 95 VYNNNADGQDENAKH---------LVRYVANTGTKTYAPTEDPGVVSVTKIY 137
+ + Q E + A T PGV+ + K+Y
Sbjct: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 26.0 bits (57), Expect = 9.4
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 97 NNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSV 133
N+ D D+ L R G P VV+V
Sbjct: 304 NDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTV 340
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 26.0 bits (58), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 141 KKFGYKTVVMGASFR-NTGEILALAG 165
K+ G K ++ G SF GEI L G
Sbjct: 23 KRIGKKEILKGISFEIEEGEIFGLIG 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,870,318
Number of extensions: 162389
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 59
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)