RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10967
(199 letters)
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 319
Score = 82.5 bits (203), Expect = 1e-19
Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
+VANT K+Y P DPGV SVTKIYNYYKKFGYKT+VMGASFRNTGEI ALAGCD +TI
Sbjct: 185 HVANTDKKSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTIS 244
Query: 173 PKLLEELENSTTPVDQMLSEKSGK 196
PKLL EL + + LS K+ +
Sbjct: 245 PKLLGELLKDNSKLAPALSVKAAQ 268
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
Length = 316
Score = 81.3 bits (200), Expect = 3e-19
Identities = 52/82 (63%), Positives = 61/82 (74%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 185 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 244
Query: 173 PKLLEELENSTTPVDQMLSEKS 194
P LL+EL S +++ LS
Sbjct: 245 PALLKELAESEGAIERKLSYTG 266
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Escherichia coli [TaxId: 562]}
Length = 220
Score = 55.9 bits (134), Expect = 2e-10
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 181
G+ +VT ++ K + V+ ASF+ + L LAGC+ +T+ + +++ +
Sbjct: 140 GSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMIS 196
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 52.5 bits (125), Expect = 3e-09
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 106 NAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--AL 163
A ++ ++ ++ E +I + V+ AS R+ + AL
Sbjct: 131 GASYVSPFLGRVDDISWDGGELL-----REIVEMIQVQDLPVKVIAASIRHPRHVTEAAL 185
Query: 164 AGCDLMTIGPKLLEELENS 182
G D+ T+ + ++L
Sbjct: 186 LGADIATMPHAVFKQLLKH 204
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 51.7 bits (123), Expect = 5e-09
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 132 SVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 181
+ +I Y +G++T ++ AS R+ ++ AL G D++T+ +LE+L
Sbjct: 145 MLGEIVEIYNNYGFETEIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKLFK 196
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7
{Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 28.3 bits (62), Expect = 0.56
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRH 79
K ++L SE K+ I EI +++ H
Sbjct: 29 KKIKLGHRSEAKDGINRTALREIKLLQELSH 59
>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId:
1423]}
Length = 440
Score = 28.1 bits (62), Expect = 0.81
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 100 ADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 159
DG N +++ YV+N+ T Y P G+V + F Y + + N
Sbjct: 333 IDGITSNDIYMLGYVSNSLTGPYKPLNKTGLVLKMDLDPNDVTFTYSHFAVPQAKGNNVV 392
Query: 160 ILA 162
I +
Sbjct: 393 ITS 395
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 27.8 bits (61), Expect = 0.83
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y + T P V + K V +G A D + +G
Sbjct: 172 YAVSVTGVTGMRERLP--EEVKDLVRRIKARTALPVAVGFGVSGKATAAQAAVADGVVVG 229
Query: 173 PKLLEELENSTTPVDQMLSE 192
L+ LE + +L E
Sbjct: 230 SALVRALEEG-RSLAPLLQE 248
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 26.7 bits (59), Expect = 0.86
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 57 SEEKNKIIENLRNEINAIKQNRHVSYATKATQTE 90
++EK ++ L ++ I RH + +A E
Sbjct: 32 TKEKKDLLGELSKVLS-ISTERHRAEVRRAVNDE 64
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 148
Score = 26.2 bits (58), Expect = 1.9
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINA---IKQN----RHVSYATKATQTED 91
L DL E++ L+ + K + + LR + N RH+ + K + +D
Sbjct: 4 LVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLMRDQD 59
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 264
Score = 25.9 bits (55), Expect = 3.3
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 60 KNKIIENLRNEINAIKQ-------NRHVSYATKATQTEDYLDVYNNNADGQDENAKHLVR 112
+ +I N I A K+ V+YA KA + G D + +
Sbjct: 2 EEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELY 61
Query: 113 YVANTGTK 120
+
Sbjct: 62 IAKLSNVP 69
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 24.5 bits (53), Expect = 3.9
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76
L K + +L+ + I+ L+ E +K+
Sbjct: 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II
FOLH1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 25.2 bits (54), Expect = 5.5
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 66 NLRNEINAIKQNRHVSYATKATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPT 125
N++ ++ +K + TQ + + AK + G +
Sbjct: 1 NMKAFLDELKAENIKKFLYNFTQIPHL-----AGTEQNFQLAKQIQSQWKEFGLDSVELA 55
Query: 126 EDPGVVSVTKIYNYY-----KKFGYKTVVMGA 152
++ VT+IYN + V++G
Sbjct: 56 HYDVLLEVTRIYNVIGTLRGAVEPDRYVILGG 87
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 24.1 bits (52), Expect = 6.2
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 40 ERNLQDLKEKVLQLQRESEEKNKIIENLRN 69
R ++ + L+R++ + + L
Sbjct: 53 RRKNHTHQQDIDDLKRQNALLEQQVRALGG 82
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein
of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Length = 213
Score = 24.6 bits (53), Expect = 7.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 29 IFLGNDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNE 70
I N SEY + NLQ+ +++ L SE + ++R E
Sbjct: 127 INFDNSSEYIENWNLQNRRQRTSVLADASETMLANVTSVRQE 168
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 25.0 bits (53), Expect = 8.2
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 132 SVTKIYNYYKKF-GYKTVVMGASFRNTGEILALA 164
+ I ++ + + K +++ ++R+T IL A
Sbjct: 263 DIQNILSFERDYPNAKVILLEQNYRSTKRILQAA 296
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 276
Score = 24.5 bits (53), Expect = 9.8
Identities = 6/31 (19%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRH 79
K+L + + ++ ++ +NE+ +++ RH
Sbjct: 36 KMLNVTAPTPQQ---LQAFKNEVGVLRKTRH 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,328
Number of extensions: 30720
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 22
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)