RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10968
(339 letters)
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 187 bits (477), Expect = 4e-58
Identities = 56/262 (21%), Positives = 91/262 (34%), Gaps = 21/262 (8%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
+ I G+G +K + K V E + F
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE-NPTALAELKAINPKVNITFH 60
Query: 87 PLDVT-NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKGSVRGQLLA 145
DVT A + + K + VD+L+N AG+ + E+TI INF G V
Sbjct: 61 TYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDH--QIERTIAINFTGLVNTTTAI 118
Query: 146 IEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRT 205
++ + KGG GG + I S T + P+YS +K A +++T ++ +
Sbjct: 119 LDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLA--PITGVTA 176
Query: 206 MSLCPGLTDTPLPDHQGEHP-FIPELKPIIGNRSMFTYCTKMVSTIA--FLLLLSLAYWT 262
S+ PG+T TPL P + ++ + T F+ +
Sbjct: 177 YSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQT-----SEQCGQNFVKAIEANK-- 229
Query: 263 QQGQAL--DNGL--ALTPPMGW 280
G D G A+ W
Sbjct: 230 -NGAIWKLDLGTLEAIEWTKHW 250
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 169 bits (431), Expect = 4e-51
Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+ G VA+VTG +G+G++F E L + AKVA ++ G Q + +++ + LF
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKGSVRGQLLAIE 147
DV +Q + F K FG +D+LVNNAGV E NWEKT+ IN + G L ++
Sbjct: 65 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLD 122
Query: 148 HMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRTMS 207
+M + GG GG ++ +SS L+P P+Y +K + +T + + +R +
Sbjct: 123 YMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNA 182
Query: 208 LCPGLTDTPL 217
+CPG +T +
Sbjct: 183 ICPGFVNTAI 192
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 156 bits (396), Expect = 4e-46
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G VAI+TGGT G+G + F++E AKV G +GE+ K D++ F
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQH 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D +++ + +F + FG V LVNNAG+ W K + +N G G
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGT 121
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
L I+ M G G +++ +SS + Y+ +K A +++ + K ++
Sbjct: 122 RLGIQRMKNK--GLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYD 179
Query: 203 IRTMSLCPGLTDTPL 217
+R ++ PG TPL
Sbjct: 180 VRVNTVHPGYIKTPL 194
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 153 bits (390), Expect = 2e-45
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 17/211 (8%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+ IVTG GLG++ ++ +V+ G +QQE + V+
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----NAVIGIV 55
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRG 141
D+ + + F A G +++++ AG G + + ++ N ++
Sbjct: 56 ADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILV 115
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ +G+ RGG + + S A + LY +K + E++ E K
Sbjct: 116 AQQTVRLIGE----RGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAEL--KDS 169
Query: 202 NIRTMSLCPGLTDTPLPDHQGEHPFIPELKP 232
+R ++L P + D+ + P
Sbjct: 170 PLRLVNLYPSGIRSEFWDNTDHVDPSGFMTP 200
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 151 bits (384), Expect = 3e-44
Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 28/254 (11%)
Query: 30 GLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLD 89
G V +VTG ++G+GKS V+ G A E K+ ++YG DR + D
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGV--ARSEAPLKKLKEKYG-DRFFYVVGD 58
Query: 90 VTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVRGQ 142
+T + + + A G +D LV NAGV D + W+K DINF V
Sbjct: 59 ITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+A+ + + G VV +SS + W Y ++K A + + +E
Sbjct: 119 GIALPELKK----TNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEER----Q 170
Query: 203 IRTMSLCPGLTDTPLPDHQGEHPFIPELKPIIGNRSMFTYCTKMV-------STIAFLLL 255
++ +++ PG+ DT + + E+ + + + A L L
Sbjct: 171 VKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLAL 230
Query: 256 LSLA-YWTQQGQAL 268
+ GQ L
Sbjct: 231 HGIPDGVN--GQYL 242
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 148 bits (377), Expect = 3e-43
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 15/209 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G VA+VTGG G+G V+ L E AKVAF + A G+Q E +R +F
Sbjct: 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----ERSMFVRH 59
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRGQ 142
DV+++A + + + + G ++VLVNNAG+ +++ + + IN + G
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC 119
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
I M + GG+++ ++S ++ +P + YS +K A A T A ++ +
Sbjct: 120 QQGIAAMKE----TGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYA 175
Query: 203 IRTMSLCPGLTDTPLPDHQGEHPFIPELK 231
IR S+ P TP+ E+
Sbjct: 176 IRVNSIHPDGIYTPMMQASLPKGVSKEMV 204
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 149 bits (378), Expect = 5e-43
Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 11/222 (4%)
Query: 5 NEGQAGVSLTWDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSV 64
++ Q + E ++G IVTG +KG+G+ H K A V S
Sbjct: 3 HQHQHQHQHQHQQPLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 62
Query: 65 ALGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY--- 121
++ E G+ + + + E +A GG+D+L+ N
Sbjct: 63 ETLQKVVSH-CLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN 121
Query: 122 ---EDKDNWEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLY 178
+D + K++++NF V + A+ + Q G++V++SS + + Y
Sbjct: 122 LFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ----SNGSIVVVSSLAGKVAYPMVAAY 177
Query: 179 STTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDH 220
S +K A + ++ E+ N+ GL DT
Sbjct: 178 SASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMK 219
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 146 bits (370), Expect = 4e-42
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 14/204 (6%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
I G VA++TG + G+G + E F KE A + V + + +++G RVL
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV-RVLEV 62
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSV 139
+DV + + ++ FGG D+LVNNAG ++ + W+ ++ +V
Sbjct: 63 AVDVATPEGVDAVVESVRSSFGGADILVNNAG-TGSNETIMEAADEKWQFYWELLVMAAV 121
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
R + M GG ++ +S A+ P + P+Y+ TK A + +++ + E
Sbjct: 122 RLARGLVPGMRARGGGA---IIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEV--I 176
Query: 200 HFNIRTMSLCPGLTDTPLPDHQGE 223
NIR + PGL TP +
Sbjct: 177 KDNIRVNCINPGLILTPDWIKTAK 200
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 143 bits (363), Expect = 5e-41
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 19/208 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G V +VTGG +G+G V F+ A+V + G E+E +F
Sbjct: 8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE------LPGAVFILC 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
DVT + + + + +FG +D +VNNAG + + + +++N G+
Sbjct: 62 DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTL 121
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
LA+ ++ + G V+ ISS I Y TK A A T+A+ +
Sbjct: 122 TKLALPYLRK----SQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY-- 175
Query: 202 NIRTMSLCPGLTDTPLPDHQGEHPFIPE 229
+R + PG TPL + P
Sbjct: 176 GVRVNCISPGNIWTPLWEELAALMPDPR 203
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 141 bits (359), Expect = 1e-40
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 11/203 (5%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGS-DRVLF 85
+ + +AI+TG ++G+G + +V S E+ E + +
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63
Query: 86 CPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY-----EDKDNWEKTIDINFKGSVR 140
PLD+T+ + K+G VD+LVN A + E DN+ K ++IN
Sbjct: 64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYG 123
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
E M K G + ++SR A +Y +TK A L E++ E
Sbjct: 124 ILKTVTEIMKVQKNGY---IFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPL- 179
Query: 201 FNIRTMSLCPGLTDTPLPDHQGE 223
IR +LCPG +T + G
Sbjct: 180 -GIRVTTLCPGWVNTDMAKKAGT 201
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 142 bits (359), Expect = 1e-40
Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 26/196 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+V GG+ LG V+ F + S+ E ++ +
Sbjct: 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTI----SIDFRENPNADH----------SFTI 66
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
+ + +++ K +K VD V AG + + ID+N +
Sbjct: 67 KDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFAS 126
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ + + +GG V+ + AL Y TK A + + E
Sbjct: 127 AHIGAKLLN-----QGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPA 181
Query: 202 NIRTMSLCPGLTDTPL 217
++ + P DTP
Sbjct: 182 GSTSLGILPVTLDTPT 197
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 142 bits (360), Expect = 1e-40
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G VA++TG G G+ + F K AKV A E + E G D L
Sbjct: 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAE----RVAGEIG-DAALAVAA 62
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
D++ +A + A +KFG VD+LVNNAG+G++ + + +++ + +N +G
Sbjct: 63 DISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLM 122
Query: 142 QLLAIEHMGQHKGG-RGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
I H ++ + ++ ++S A P Y+ TK ++ T+A+ E
Sbjct: 123 TSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIEL--AP 180
Query: 201 FNIRTMSLCPGLTDTPL 217
IR ++L P +TPL
Sbjct: 181 AKIRVVALNPVAGETPL 197
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 140 bits (356), Expect = 4e-40
Identities = 62/207 (29%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G VA+V+GG +G+G S V + E AKV FG G+ E + D + L
Sbjct: 6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHL 60
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRGQ 142
DVT A ++ A FGG+ VLVNNAG+ W++ +D+N G G
Sbjct: 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGI 120
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
++ M K G+++ ISS L Y+ TK A T++ E
Sbjct: 121 RAVVKPM---KEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALEL--GPSG 175
Query: 203 IRTMSLCPGLTDTPL----PDHQGEHP 225
IR S+ PGL TP+ P+ +
Sbjct: 176 IRVNSIHPGLVKTPMTDWVPEDIFQTA 202
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 142 bits (360), Expect = 4e-40
Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 11/208 (5%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
G A VTGG G+G V L + KVA ++ E V+
Sbjct: 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVR 140
LDV ++ F+ + +A+FG V +L NNAGV D+W+ + +N G V
Sbjct: 65 QLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVN 124
Query: 141 GQLLAIEHM---GQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
G + M + +GG VV +S A + +Y+TTK A +E++
Sbjct: 125 GVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSL- 183
Query: 198 EKHFNIRTMSLCPGLTDTPLPDHQGEHP 225
+ I LCPGL + + P
Sbjct: 184 -LKYEIGVSVLCPGLVKSYIYASDDIRP 210
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 140 bits (356), Expect = 6e-40
Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 15/204 (7%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
+ +AIVTG G+G++ VA G + + E + E G D L
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQ----ETAAEIG-DDALCV 79
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSV 139
P DVT+ S +F KFG VDVL NNAG G W++ +D N G
Sbjct: 80 PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
A M + RGG ++ S +A P Y+ TK A T++ + +
Sbjct: 140 LCTQEAFRVMKAQE-PRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDG--R 196
Query: 200 HFNIRTMSLCPGLTDTPLPDHQGE 223
+I + G DTP+
Sbjct: 197 VHDIACGQIDIGNADTPMAQKMKA 220
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 139 bits (354), Expect = 7e-40
Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G I+TGG +GLG + A+V G +E D + L
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----DAARYQHL 58
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRGQ 142
DVT + ++ + A+ +FG VD LVNNAG+ E + + K ++IN G G
Sbjct: 59 DVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGM 118
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
I M K GG++V ISS L+ L Y +K ++ E
Sbjct: 119 KTVIPAM---KDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTD--R 173
Query: 203 IRTMSLCPGLTDTPLPDHQGE 223
IR S+ PG+T TP+ G
Sbjct: 174 IRVNSVHPGMTYTPMTAETGI 194
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 139 bits (353), Expect = 1e-39
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 15/204 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
V +++G LG + ++ A + +V E K+ + R L
Sbjct: 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR--RALSVGT 67
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
D+T+ A ++ + +G VDV++NNA K ++ I++ G++R
Sbjct: 68 DITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRL 127
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ + G VV ++S + Y K A LA ++ + E EK
Sbjct: 128 IQGFTPALEE----SKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEK-- 181
Query: 202 NIRTMSLCPGLTDTPLPDHQGEHP 225
IR S+ PG EH
Sbjct: 182 GIRVNSVLPGYIWGGTLKSYFEHQ 205
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 138 bits (351), Expect = 3e-39
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 12/196 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
V ++TGG GLG++ E AK++ S E + + VL
Sbjct: 12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 71
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
DV+++A E +FG +D NNAG+ + ++K + IN +G G
Sbjct: 72 DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLG 131
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
++ M + G VV +S + Y+ K + T E+
Sbjct: 132 LEKVLKIMREQGSGM---VVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRY-- 186
Query: 202 NIRTMSLCPGLTDTPL 217
IR ++ PG TP+
Sbjct: 187 GIRINAIAPGAIWTPM 202
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 138 bits (351), Expect = 4e-39
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 18/207 (8%)
Query: 17 ESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSK 76
E+ + ++ +A++TG T G+G + + F+ E A+V G + +
Sbjct: 16 ENLYFQSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLD----AAIA 71
Query: 77 EYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKT 130
E G + D N A + ++ K KA+ G +DVL NAG G ++ ++ T
Sbjct: 72 EIG-GGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDT 130
Query: 131 IDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTE 190
D N KG + A+ + RG +VV+ S + +Y+ +K A ++
Sbjct: 131 FDRNVKGVLFTVQKALPLL-----ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFAR 185
Query: 191 AMGDEFYEKHFNIRTMSLCPGLTDTPL 217
+ K IR +L PG T+T
Sbjct: 186 NWILDL--KDRGIRINTLSPGPTETTG 210
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 138 bits (349), Expect = 8e-39
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 22/215 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGS-DRVLFCP 87
VAI+TG + G+G++ F +E AKV G E+ ++ S V
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK----------DNWEKTIDINFKG 137
DVT A + I KFG +D+LVNNAG D ++++ T+++N +
Sbjct: 65 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 124
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI---PGYLWPLYSTTKKAQLAYTEAMGD 194
+ A+ H+ G +V ISS + + P + + YS K A YT
Sbjct: 125 VIALTKKAVPHLSS----TKGEIVNISSIASGLHATPDFPY--YSIAKAAIDQYTRNTAI 178
Query: 195 EFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPE 229
+ IR S+ PGL T G +
Sbjct: 179 DL--IQHGIRVNSISPGLVATGFGSAMGMPEETSK 211
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 136 bits (345), Expect = 1e-38
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 15/203 (7%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
VAIVTG + G G + FL +VA S E+ + + Y D+VL DV
Sbjct: 4 VAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRADVA 62
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK---------DNWEKTIDINFKGSVRGQ 142
++ +FG +DVLVNNAG+ + + ++K + +N +G G
Sbjct: 63 DEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGC 122
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ HM G +V I+S +L+ Y+T+K A L T+++ ++
Sbjct: 123 RAVLPHMLLQGAGV---IVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGS--G 177
Query: 203 IRTMSLCPGLTDTPLPDHQGEHP 225
IR ++CPG+ +TP+ + + P
Sbjct: 178 IRCNAVCPGMIETPMTQWRLDQP 200
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 137 bits (347), Expect = 1e-38
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 16/207 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
V IVTGG G+G++ E F K A V + + E + +
Sbjct: 26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG-----SKAFGVRV 80
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DV++ E++ K AK+G VDVLVNNAG G ++ W++ + +N KG
Sbjct: 81 DVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCS 140
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
I M + GG+++ +S TA Y +K A + T AM + ++
Sbjct: 141 KYVIPVM---RRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKE--G 195
Query: 203 IRTMSLCPGLTDTPLPDHQGEHPFIPE 229
IR ++ PG D+P P
Sbjct: 196 IRVNAVAPGTIDSPYFTKIFAEAKDPA 222
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 137 bits (347), Expect = 2e-38
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ VAI+TGG G+G++ + F++ AKV + G++ D + F
Sbjct: 15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG---SPDVISFVHC 71
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE--------DKDNWEKTIDINFKGSVR 140
DVT N+ AK G +D++ N GV +++++ +DIN G+
Sbjct: 72 DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL-YSTTKKAQLAYTEAMGDEFYEK 199
A M + G++V +S ++ G Y+ TK A L T ++ E E
Sbjct: 132 VAKHAARVM---IPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEY 188
Query: 200 HFNIRTMSLCPGLTDTPL 217
IR + P + +PL
Sbjct: 189 --GIRVNCVSPYIVASPL 204
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 136 bits (344), Expect = 2e-38
Identities = 43/216 (19%), Positives = 77/216 (35%), Gaps = 21/216 (9%)
Query: 32 VAIVTGGTKGLGKSFVEHFLK---EHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
V ++TG ++G G++ + + + S ++ Q ++E + +V+
Sbjct: 8 VCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAA 67
Query: 89 DVTNQASFENIFVKAKAKFG----GVDVLVNNAGV---------GYEDKDNWEKTIDINF 135
D+ +A + + + +L+NNA D +N
Sbjct: 68 DLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNL 127
Query: 136 KGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDE 195
+ + Q G TVV ISS AL P W LY K A+ + + E
Sbjct: 128 TSMLCLTSGTLNAF-QDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAE 186
Query: 196 FYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPELK 231
++R +S PG D + E PEL+
Sbjct: 187 ----EPSVRVLSYAPGPLDNDMQQLARETSKDPELR 218
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 136 bits (344), Expect = 3e-38
Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 11/195 (5%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
VA+VTGG+ G+G + VE L+ A VAF E + + R+
Sbjct: 7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVC 66
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DV + + G +LVNNAG G + W + + + F +
Sbjct: 67 DVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPV 126
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ + +V ++S A P S + +M EF K
Sbjct: 127 RAFLPQLESRADAA---IVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPK--G 181
Query: 203 IRTMSLCPGLTDTPL 217
+R + GL ++
Sbjct: 182 VRVNGILIGLVESGQ 196
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 136 bits (344), Expect = 4e-38
Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 11/202 (5%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G +A+VTGG G+G+ + E V G + + E G + V
Sbjct: 32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVC 90
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVRG 141
DV + +F +A+F +D+LVNNAG + W + N G+
Sbjct: 91 DVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLC 150
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
A M + + RGG ++ S +A P Y+ TK A T++ + +
Sbjct: 151 TQHAFRMM-KAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDG--RMH 207
Query: 202 NIRTMSLCPGLTDTPLPDHQGE 223
+I + G T +
Sbjct: 208 DIACGQIDIGNAATDMTARMST 229
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 136 bits (344), Expect = 4e-38
Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 23/200 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G VA++TGG GLG++ V+ F+ E A+VA S + E + +
Sbjct: 4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG-----GNAVGVVG 58
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY-----------EDKDNWEKTIDINFKG 137
DV + + + A FG +D L+ NAG+ + ++ +N KG
Sbjct: 59 DVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKG 118
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
+ + + G+VV S P PLY+ TK A + M E
Sbjct: 119 YIHAVKACLPALVS----SRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELA 174
Query: 198 EKHFNIRTMSLCPGLTDTPL 217
++R + PG +T L
Sbjct: 175 P---HVRVNGVAPGGMNTDL 191
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 134 bits (340), Expect = 5e-38
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
VA++TG ++G+G++ ++ +A G SV E+ E +E G V + LDV+
Sbjct: 4 VAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGV-EVFYHHLDVS 62
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK------DNWEKTIDINFKGSVRGQLLA 145
S E K +FG VDV+V NAG+GY + + + + I++N G R
Sbjct: 63 KAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAF 122
Query: 146 IEHMGQHKGGRGGTVVMISSRTAL--IPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNI 203
++ + + G +V S + IP Y +TK A A E ++
Sbjct: 123 LDSLKRTG---GLALVTTSD-VSARLIPY--GGGYVSTKWAARALVRTFQIENP----DV 172
Query: 204 RTMSLCPGLTDTPLPDH 220
R L PG DT
Sbjct: 173 RFFELRPGAVDTYFGGS 189
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 135 bits (341), Expect = 8e-38
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 13/212 (6%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+ G + ++TG G+G+ F K +K+ + E+ + K G+ +V
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-CKGLGA-KVHTFV 86
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRG 141
+D +N+ + K KA+ G V +LVNNAGV Y EKT ++N
Sbjct: 87 VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWT 146
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYE-KH 200
+ M ++ G +V ++S + Y ++K A + + + + DE +
Sbjct: 147 TKAFLPAMTKNNHGH---IVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQI 203
Query: 201 FNIRTMSLCPGLTDTPLPDHQGEHPFIPELKP 232
++T LCP +T + P L+P
Sbjct: 204 TGVKTTCLCPNFVNTGFIKN-PSTSLGPTLEP 234
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 135 bits (342), Expect = 1e-37
Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 12/205 (5%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
G A+VTGG G+G + F + A++ EQ +
Sbjct: 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DAHGV 85
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVR 140
DV + + +A GGVDV+ +NAG+ + D+W IDI+ GS+
Sbjct: 86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIH 145
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
+ + + G GG + +S L+P Y K + E + E + +
Sbjct: 146 AVEAFLPRLLEQ--GTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLARE-VKPN 202
Query: 201 FNIRTMSLCPGLTDTPLPDHQGEHP 225
I LCP + +T L +
Sbjct: 203 -GIGVSVLCPMVVETKLVSNSERIR 226
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 135 bits (341), Expect = 2e-37
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 20/213 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGS-DRVLFCP 87
G I+TG + G+G+S F KE A+V G + E+ +++ K +++
Sbjct: 25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK--------DNWEKTIDINFKGSV 139
DVT + ++I AKFG +D+LVNNAG D + ++KT +NF+ +
Sbjct: 85 ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 144
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALI---PGYLWPLYSTTKKAQLAYTEAMGDEF 196
EH+ + G +V +SS A GY + Y+ K A YT +
Sbjct: 145 EMTQKTKEHLIK----TKGEIVNVSSIVAGPQAHSGYPY--YACAKAALDQYTRCTAIDL 198
Query: 197 YEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPE 229
+ +R S+ PG T G +
Sbjct: 199 IQH--GVRVNSVSPGAVATGFMGAMGLPETASD 229
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 133 bits (336), Expect = 2e-37
Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 22/196 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ +V GG LG V+ F + VA + + E +E + ++
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRARNWWVAS----IDVVENEEAS------ASVIVKMTD 55
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
T QA V VD ++ AG N + + S
Sbjct: 56 SFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 115
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
LA +H+ GG + + ++ AL Y K A +++ +
Sbjct: 116 SHLATKHLK-----EGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPS 170
Query: 202 NIRTMSLCPGLTDTPL 217
+++ P DTP+
Sbjct: 171 GAAAIAVLPVTLDTPM 186
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 132 bits (333), Expect = 5e-37
Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 22/196 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
IV GG LG + +E F K V + L + + S+ ++
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLN----IDLSANDQAD------SNILVDGNK 51
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVRG 141
+ T Q + + VD + AG N + I + S
Sbjct: 52 NWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIA 111
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
LA H+ GG + + + A+ P Y K A T ++ +
Sbjct: 112 AKLATTHLKP-----GGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPD 166
Query: 202 NIRTMSLCPGLTDTPL 217
N +++ P DTP+
Sbjct: 167 NSAVLTIMPVTLDTPM 182
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 132 bits (334), Expect = 5e-37
Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+VTGG+KG+GK+ VE L+ + + + ++ + F
Sbjct: 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINI-----------DIQQSFSAENLKFIKA 51
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+T Q N+ K D + NAG+ + D ++ +K +D+N S+
Sbjct: 52 DLTKQQDITNVL--DIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFI 109
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
++ G ++V S I Y+ +K A T+++ + +
Sbjct: 110 KGLENNL-----KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDL--AKYQ 162
Query: 203 IRTMSLCPGLTDTPL 217
IR ++CPG DT L
Sbjct: 163 IRVNTVCPGTVDTDL 177
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 133 bits (336), Expect = 6e-37
Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)
Query: 3 SPNEGQAGVSLTWDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGT 62
+ +G + + RP + + +A+VTG + G+G + +++ KV
Sbjct: 5 HHHHHSSGRENLYFQGHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCAR 64
Query: 63 SVALGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE 122
+V E+ E ++ D++N+ ++F +++ GVD+ +NNAG+
Sbjct: 65 TVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARP 124
Query: 123 DK------DNWEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTA---LIPGY 173
D W+ ++N A + M + G ++ I+S + ++P
Sbjct: 125 DTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDD-GHIININS-MSGHRVLPLS 182
Query: 174 LWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDH 220
+ YS TK A A TE + E E +IR + PG+ +T
Sbjct: 183 VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFK 229
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 131 bits (333), Expect = 1e-36
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 18/207 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G AIV GGT G+G + V ++ A+V G + + +E+G RV
Sbjct: 7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIA----RIREEFG-PRVHALRS 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+ + + A G +D+L NAGV + ++++ +N KG+
Sbjct: 62 DIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTV 121
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ GG++V SS +YS +K A +++ + E
Sbjct: 122 QRLTPLI-----REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAEL--LPRG 174
Query: 203 IRTMSLCPGLTDTPLPDHQGEHPFIPE 229
IR S+ PG DTP G
Sbjct: 175 IRVNSVSPGFIDTPTKGVAGITEAERA 201
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 131 bits (332), Expect = 1e-36
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G A++TG +G+G++F E +++E A VA + Q E +
Sbjct: 7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----PAAYAVQM 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DVT Q S + GG+D+LVNNA + ++++EK IN G++
Sbjct: 62 DVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTL 121
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
A M GRGG ++ ++S+ L +Y TK A ++ T++ G + +
Sbjct: 122 QAAARQM--IAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKH--R 177
Query: 203 IRTMSLCPGLTDTPL 217
I ++ PG+ D
Sbjct: 178 INVNAIAPGVVDGEH 192
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 131 bits (331), Expect = 2e-36
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
Q+K V IVTG + GLG + +E A V + L +E + E G V F
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLG----LDLKPPAGEEPAAELG-AAVRFR 58
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK----------DNWEKTIDINFK 136
DVTN+A AK +FG V LVN AG +K D++ +T+ +N
Sbjct: 59 NADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLI 118
Query: 137 GSVRGQLLAIEHMGQHK---GGRGGTVVMISSRTALIPGYLWPL----YSTTKKAQLAYT 189
G+ LA E M Q + G G +V +S I + + Y+ +K A T
Sbjct: 119 GTFNMIRLAAEVMSQGEPDADGERGVIVNTAS----IAAFDGQIGQAAYAASKGGVAALT 174
Query: 190 EAMGDEFYEKHFNIRTMSLCPGLTDTPL 217
E F IR +++ PG+ DTP+
Sbjct: 175 LPAAREL--ARFGIRVVTIAPGIFDTPM 200
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 131 bits (332), Expect = 2e-36
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 22/203 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKE-YGSDRVLFCP 87
I+TG + G+G++ F +E A V G S E+ + K +V
Sbjct: 5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY----------EDKDNWEKTIDINFKG 137
DVT + + I +FG +DVLVNNAG + D + KT+ +N +
Sbjct: 65 ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 124
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI---PGYLWPLYSTTKKAQLAYTEAMGD 194
+ H+ G +V +SS A P +L+ Y+ K A YT +
Sbjct: 125 VIEMTKKVKPHLVA----SKGEIVNVSSIVAGPQAQPDFLY--YAIAKAALDQYTRSTAI 178
Query: 195 EFYEKHFNIRTMSLCPGLTDTPL 217
+ + IR S+ PG+ +T
Sbjct: 179 DLAKF--GIRVNSVSPGMVETGF 199
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 131 bits (332), Expect = 2e-36
Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 18/197 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ VAI+TG G+G + A+V + G + +
Sbjct: 10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA----AASVG-RGAVHHVV 64
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE--------DKDNWEKTIDINFKGSVR 140
D+TN+ S + FG +D++ NNA D W+ T +N +G++
Sbjct: 65 DLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTML 124
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
AI + GG +V ISS TA + Y+ TK A T + ++
Sbjct: 125 MCKYAIPRLISAGGGA---IVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRH- 180
Query: 201 FNIRTMSLCPGLTDTPL 217
+R ++ PGL TP
Sbjct: 181 -GVRCNAIAPGLVRTPR 196
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 130 bits (329), Expect = 4e-36
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 25/195 (12%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ V IVTG + G+G++ E F+ E +KV + G +
Sbjct: 7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDL-------------SIHDPGEAKYDHIEC 53
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DVTN + ++G + VLVNNAG+ W + ID+N G
Sbjct: 54 DVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYAS 113
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
AI +M + + +V ISS A I Y T+K A + T+++ ++
Sbjct: 114 KFAIPYMIRSRDPS---IVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP---L 167
Query: 203 IRTMSLCPGLTDTPL 217
+R ++CP DTPL
Sbjct: 168 LRCNAVCPATIDTPL 182
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 130 bits (329), Expect = 6e-36
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 16/195 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G VAIVTG G+G + E V + + + G C +
Sbjct: 28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAAD----AAATKIG-CGAAACRV 82
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DV+++ + A FGGVD LV NAGV + +++++ I IN +G+
Sbjct: 83 DVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCT 142
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
A M + GG +V +SS + Y +K + + E
Sbjct: 143 KHAAPRMIERGGGA---IVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSS--G 197
Query: 203 IRTMSLCPGLTDTPL 217
IR+ +L P DTP+
Sbjct: 198 IRSNTLLPAFVDTPM 212
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 129 bits (328), Expect = 7e-36
Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 14/214 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G V +VTG +G + +E +A + E+ E ++
Sbjct: 6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVC 63
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
DVT++ + FG +D L NNAG D++ + + IN G+
Sbjct: 64 DVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHV 123
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
M GR +V +S + Y T+K A +A TE +
Sbjct: 124 LKAVSRQMITQNYGR---IVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPY-- 178
Query: 202 NIRTMSLCPGLTDTPLPDHQGEHPFIPELKPIIG 235
NIR ++ PG +
Sbjct: 179 NIRVNAISPGYMGPGFMWERQVELQAKVGSQYFS 212
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 128 bits (325), Expect = 8e-36
Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 19/206 (9%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
++TG ++G+G++ + +V + E + L P DV
Sbjct: 7 AVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVR 60
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK------DNWEKTIDINFKGSVRGQLLA 145
+ + + FG + LVNNAGVG + W +D N G+ G A
Sbjct: 61 EEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHA 120
Query: 146 IEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRT 205
+ + + GGT+V + S P Y+ +K L A + E N+R
Sbjct: 121 VPALLRRG---GGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREA--NVRV 175
Query: 206 MSLCPGLTDTPLPDH--QGEHPFIPE 229
+++ PG DT + PE
Sbjct: 176 VNVLPGSVDTGFAGNTPGQAWKLKPE 201
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 129 bits (326), Expect = 9e-36
Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 14/196 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
K V IVTG G+G++ + F + V Q +E VL
Sbjct: 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKA 63
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVRG 141
DV+ + E + + +DVL NNAG+ + WE+ + +N +
Sbjct: 64 DVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYS 123
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
I M + G +V +S + G+ Y+ K + T ++ + ++
Sbjct: 124 SRAVIPIMLKQGKGV---IVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQ-- 178
Query: 202 NIRTMSLCPGLTDTPL 217
IR +++ PG T +
Sbjct: 179 GIRAVAVLPGTVKTNI 194
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 128 bits (325), Expect = 1e-35
Identities = 37/207 (17%), Positives = 77/207 (37%), Gaps = 14/207 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGS-DRVLFCP 87
KG V +VTG +G+G + + A V G + A + + ++
Sbjct: 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN 72
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVR 140
L+ + + + + +FG +D L++NA + +++ + + +N +
Sbjct: 73 LENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFM 132
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
+ + + + + SS W Y +K A + + DE E
Sbjct: 133 LTRALLPLLKRSEDAS---IAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADE-LEGV 188
Query: 201 FNIRTMSLCPGLTDTPL--PDHQGEHP 225
+R S+ PG T T + + E+P
Sbjct: 189 TAVRANSINPGATRTGMRAQAYPDENP 215
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 128 bits (325), Expect = 1e-35
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 14/196 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ VA+VT T G+G + ++ A V ++ E V
Sbjct: 13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL--SVTGTVC 70
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVRG 141
V E + A GGVD+LV+NA V ++ W+K + +N K +V
Sbjct: 71 HVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLM 130
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ M + GG V+++SS A P Y+ +K A L T+ + E +
Sbjct: 131 TKAVVPEMEKRGGGS---VLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPR-- 185
Query: 202 NIRTMSLCPGLTDTPL 217
NIR L PGL T
Sbjct: 186 NIRVNCLAPGLIKTNF 201
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 128 bits (325), Expect = 2e-35
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 30/210 (14%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
+KGLVA++TGG GLG + E + + A + GE Q K+ + +F
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG-----NNCVFA 63
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK------------DNWEKTIDIN 134
P DVT++ + AK KFG VDV VN AG+ K +++++ +D+N
Sbjct: 64 PADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVN 123
Query: 135 FKGSVRGQLLAIEHMGQHK---GGRGGTVVMISSRTALIPGYLWPL----YSTTKKAQLA 187
G+ L MGQ++ GG+ G ++ +S + + + YS +K +
Sbjct: 124 LMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS----VAAFEGQVGQAAYSASKGGIVG 179
Query: 188 YTEAMGDEFYEKHFNIRTMSLCPGLTDTPL 217
T + + IR M++ PGL TPL
Sbjct: 180 MTLPIARDL--APIGIRVMTIAPGLFGTPL 207
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 128 bits (325), Expect = 2e-35
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 12/194 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G AI+TG G+GK F A V + E + G + C
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRC 67
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-----DKDNWEKTIDINFKGSVRGQL 143
D+T++ + A +K G VD+LVNNAG G ++ + ++N
Sbjct: 68 DITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQ 127
Query: 144 LAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNI 203
L M ++ GG ++ I+S A Y+++K A M + EK NI
Sbjct: 128 LVAPEMEKNGGGV---ILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEK--NI 182
Query: 204 RTMSLCPGLTDTPL 217
R + PG T
Sbjct: 183 RVNGIAPGAILTDA 196
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 128 bits (325), Expect = 2e-35
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 24/195 (12%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G VA+VTG G+G + V A+VA +VA L P
Sbjct: 27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-------------ADLHLPG 73
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+ A + + A G +D++VNNAGV +W ++ +N + R
Sbjct: 74 DLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRIC 133
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
AI M GG +V ++S L PG LY TK A + T+ MG + +
Sbjct: 134 RAAIPLMAAAGGGA---IVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQ--G 188
Query: 203 IRTMSLCPGLTDTPL 217
IR ++CP +TP+
Sbjct: 189 IRINAVCPNEVNTPM 203
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 128 bits (325), Expect = 2e-35
Identities = 49/205 (23%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGS-DRVLFCP 87
+ +VTGG G+GK + A V G + +E + + + P
Sbjct: 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP 69
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVR 140
D+TN+ A G + +V+ AG D + W +T+D+N G++
Sbjct: 70 TDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMY 129
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
A M + GG V ISS A + Y TK A + DE
Sbjct: 130 VLKHAAREMVRGGGGS---FVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGAS- 185
Query: 201 FNIRTMSLCPGLTDTPLPDHQGEHP 225
+R S+ PGL T L E
Sbjct: 186 -WVRVNSIRPGLIRTDLVAAITESA 209
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 127 bits (323), Expect = 3e-35
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 19/207 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G +VTGG +G+G++ + F +E A VA G++ + F +
Sbjct: 5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE-GKEVAEAI-------GGAFFQV 56
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+ ++ +A G VDVLVNNA + W + +++N +
Sbjct: 57 DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLS 116
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
LA M + GG +V ++S L Y+ +K + T ++ +
Sbjct: 117 ALAAREMRKVGGGA---IVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPL--R 171
Query: 203 IRTMSLCPGLTDTPLPDHQGEHPFIPE 229
IR ++ PG T PE
Sbjct: 172 IRVNAVAPGAIATEAVLEAIALSPDPE 198
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 128 bits (324), Expect = 3e-35
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 24/195 (12%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
VAIVTGG+ G+G + V+ ++ AKV + +
Sbjct: 13 TDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF------------KI 60
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DVTN+ + K K+G +D+LVNNAG+ + W + ID+N GS
Sbjct: 61 DVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMA 120
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
I M G ++ I+S + Y T+K A L T ++ ++
Sbjct: 121 KYTIPVMLAIGHGS---IINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP---K 174
Query: 203 IRTMSLCPGLTDTPL 217
IR ++CPG TP+
Sbjct: 175 IRCNAVCPGTIMTPM 189
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 128 bits (325), Expect = 3e-35
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 15/197 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G +AIVTG + G+G++ F +E AKV + + E + G
Sbjct: 7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGG--EAAALAG 64
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
DV ++A E + A +FGG+D NNAG + W +T+D N +
Sbjct: 65 DVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLA 124
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGY-LWPLYSTTKKAQLAYTEAMGDEFYEKH 200
+ + GG++ SS G+ Y+ +K + +A+ E +
Sbjct: 125 AKYQVPAIAAL---GGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGAR- 180
Query: 201 FNIRTMSLCPGLTDTPL 217
IR +L PG TDTP
Sbjct: 181 -GIRVNALLPGGTDTPA 196
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 128 bits (323), Expect = 3e-35
Identities = 45/203 (22%), Positives = 69/203 (33%), Gaps = 14/203 (6%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+ G VA+VTG ++G+G + A+V V E+E G
Sbjct: 27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG--EAESHA 84
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVR 140
D+++ + A G DVLVNNAGVG+ W+ I +N K
Sbjct: 85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYL 144
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
M K G ++ ISS P Y+ +K + +E +
Sbjct: 145 LLRAFAPAMIAAKRGH---IINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQH- 200
Query: 201 FNIRTMSLCPGLTDTPLPDHQGE 223
+R + PG T
Sbjct: 201 -QVRVSLVAPGSVRTEFGVGLSA 222
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 128 bits (323), Expect = 3e-35
Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 13/205 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
KG ++TG ++G+G + F + AKV G + + G F
Sbjct: 6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGG-DAAFFAA 64
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
D+ + + + + AKFGG+DVL+NNAG K ++ +D N + V
Sbjct: 65 DLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMT 124
Query: 142 QLLAIEHM--GQHKGGRGGTVVMISSRTALIPGYL-WPLYSTTKKAQLAYTEAMGDEFYE 198
A+ H+ G+ V+ S G LY K + D +
Sbjct: 125 TKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTK 184
Query: 199 KHFNIRTMSLCPGLTDTPLPDHQGE 223
+R + PG DT + +
Sbjct: 185 D--GVRFNIVSPGTVDTAFHADKTQ 207
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 128 bits (324), Expect = 3e-35
Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 21/205 (10%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
Q +G AIV+GG GLG++ V + V + G+ E +R F
Sbjct: 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG-----NRAEFV 81
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-----------DNWEKTIDINF 135
+VT++ S A +V + G G + + KTID+
Sbjct: 82 STNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYL 141
Query: 136 KGSVRGQLLAIEHMGQHK---GGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAM 192
G+ L + + G G +V+ +S Y+ K + T A
Sbjct: 142 NGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAA 201
Query: 193 GDEFYEKHFNIRTMSLCPGLTDTPL 217
+ IR ++ PG TP+
Sbjct: 202 ARDL--SSAGIRVNTIAPGTMKTPI 224
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 127 bits (321), Expect = 3e-35
Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 20/205 (9%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALG-------EQQEKEYSKEYGSDRVL 84
+ ++TG KG+G++ F + + L E+ E E
Sbjct: 4 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LTD 61
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGS 138
D+++ A + ++G +D LVNNAGVG +++++ T++ N KG+
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGT 121
Query: 139 VRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYE 198
M + G + I+S A +Y +K Q E M +
Sbjct: 122 FFLTQALFALMERQHSGH---IFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARK 178
Query: 199 KHFNIRTMSLCPGLTDTPLPDHQGE 223
N+R + PG TP+ +
Sbjct: 179 C--NVRITDVQPGAVYTPMWGKVDD 201
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 126 bits (319), Expect = 6e-35
Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 20/198 (10%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
+ ++TG + GLG + + E G S + S G + D+
Sbjct: 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVG-----YRARDLA 57
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRGQLLA 145
+ E +F + +V++AG GY +D + + I+ N ++
Sbjct: 58 SHQEVEQLF---EQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLREL 114
Query: 146 IEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRT 205
++ + VVMI S A P Y K A E++ E K ++
Sbjct: 115 VKRYKD----QPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLEL--KGKPMKI 168
Query: 206 MSLCPGLTDTPLPDHQGE 223
+++ PG T + G+
Sbjct: 169 IAVYPGGMATEFWETSGK 186
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 127 bits (321), Expect = 7e-35
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G A++TG TKG+G F A++ G V+ + + +++G V +
Sbjct: 19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-TDVHTVAI 77
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRGQ 142
D+ + + +A FGG+DVLVNNAG+ + D ++ TI +N +
Sbjct: 78 DLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLA 137
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ M G GG ++ ++S AL P Y T+K + T+ + E
Sbjct: 138 SAVGKAM--VAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPH--G 193
Query: 203 IRTMSLCPGLTDTPL 217
IR S+CP + T +
Sbjct: 194 IRANSVCPTVVLTEM 208
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 126 bits (320), Expect = 8e-35
Identities = 34/197 (17%), Positives = 74/197 (37%), Gaps = 14/197 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSD-RVLFCP 87
+ +VTG + G+G+ + + A V G + Q ++E G +
Sbjct: 11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILD 70
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVR 140
L + + + + + +D +++NAG+ + + W+ + +N +
Sbjct: 71 LLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFM 130
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
+ + + G +V SS W Y+ +K A + + DE Y++
Sbjct: 131 LTQALLPLLLKSDAGS---LVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADE-YQQ- 185
Query: 201 FNIRTMSLCPGLTDTPL 217
+R + PG T T +
Sbjct: 186 -RLRVNCINPGGTRTAM 201
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 127 bits (321), Expect = 8e-35
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
KG A+VTGG+KG+G + VE A+V + ++ + + ++ V
Sbjct: 20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVC 77
Query: 89 DVTNQASFENIFVKAKAKFGG-VDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVR 140
D+ ++ + + F G +++LVNNAGV + +KD + + NF+ +
Sbjct: 78 DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKD-YNIIMGTNFEAAYH 136
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
+A + + G V+ +SS LYS +K A T+++ E+ +
Sbjct: 137 LSQIAYPLLKASQNGN---VIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKD- 192
Query: 201 FNIRTMSLCPGLTDTPL 217
NIR S+ PG+ TPL
Sbjct: 193 -NIRVNSVAPGVILTPL 208
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 126 bits (320), Expect = 1e-34
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
VA++TG G+G++ + V G + E+ E G + +
Sbjct: 27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGG--QAIALEA 84
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
DV+++ N KFG +D++V NAG+ W++TI +N +G+
Sbjct: 85 DVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLT 144
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTAL----IPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
L + ++ Q GG +V++SS PG Y+ TK AQ+A + + E
Sbjct: 145 LHLTVPYLKQRGGGA---IVVVSSINGTRTFTTPG--ATAYTATKAAQVAIVQQLALELG 199
Query: 198 EKHFNIRTMSLCPGLTDTPLPDHQGEHP 225
+ +IR ++CPG +T + D+
Sbjct: 200 KH--HIRVNAVCPGAIETNISDNTKLRH 225
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 125 bits (317), Expect = 1e-34
Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 21/202 (10%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+K +A+VTG T G+G V+ ++H A G L E E V
Sbjct: 3 LKKKIAVVTGATGGMGIEIVKDLSRDHIVYALGRNPEHLAALAEIE--------GVEPIE 54
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRG 141
D+ + E V VD LV+ A V + W +D+N
Sbjct: 55 SDIVKEVLEEG-GVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAEL 113
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ + G V+ I+S P +Y+ +K A +A E
Sbjct: 114 SRQLLPALRA----ASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANN-- 167
Query: 202 NIRTMSLCPGLTDTPLPDHQGE 223
IR ++ PG T+TP+ +
Sbjct: 168 GIRVSTVSPGPTNTPMLQGLMD 189
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 126 bits (318), Expect = 2e-34
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 16/206 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
VAIVTGG + +G + V + A+V A+ + ++ E V +
Sbjct: 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH--DVSSVVM 69
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYED-------KDNWEKTIDINFKGSVRG 141
DVTN S +N + G VD+LV AG+ + W K +DIN G R
Sbjct: 70 DVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRS 129
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL--YSTTKKAQLAYTEAMGDEFYEK 199
M + K G +V I S + LI Y+ +K Y ++ E+
Sbjct: 130 CQAVGRIMLEQKQGV---IVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEW--A 184
Query: 200 HFNIRTMSLCPGLTDTPLPDHQGEHP 225
IR ++ P +T L E P
Sbjct: 185 PHGIRANAVAPTYIETTLTRFGMEKP 210
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 125 bits (316), Expect = 2e-34
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 23/208 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G V I+T +G+G++ F +E AKV + + ++ EK + L
Sbjct: 5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-------PGIQTRVL 57
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DVT + + + +DVL N AG + ++ +W+ ++++N +
Sbjct: 58 DVTKKKQIDQFA----NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMI 113
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYL-WPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ M K G ++ +SS + + G + +YSTTK A + T+++ +F ++
Sbjct: 114 KAFLPKMLAQKSGN---IINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQ-- 168
Query: 202 NIRTMSLCPGLTDTPLPDHQGEHPFIPE 229
IR +CPG DTP + + PE
Sbjct: 169 GIRCNCVCPGTVDTPSLQERIQARGNPE 196
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 125 bits (317), Expect = 3e-34
Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 14/199 (7%)
Query: 25 NVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVL 84
++ I+G +A+VT G+ GLG + + A++ + E + +V
Sbjct: 2 DLGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVD 61
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKG 137
D+ + + + GG D+LV + G G ++W+++ + +
Sbjct: 62 IVAGDIREPGDIDRL-FEKARDLGGADILVYSTG-GPRPGRFMELGVEDWDESYRLLARS 119
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
+V A E M + GR +V I S T L P L + + + + E
Sbjct: 120 AVWVGRRAAEQMVEKGWGR---MVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALEL- 175
Query: 198 EKHFNIRTMSLCPGLTDTP 216
+ ++ P L T
Sbjct: 176 -APHGVTVNAVLPSLILTD 193
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 125 bits (317), Expect = 3e-34
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 25 NVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVL 84
++Q+KG A+VTG T G+GK+ + E A V G + KE +Y +
Sbjct: 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQ 64
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKG 137
D+ + +++ K+ VD+L+NN G +E ++W K ++N
Sbjct: 65 PVVADLGTEQGCQDVI----EKYPKVDILINNLG-IFEPVEYFDIPDEDWFKLFEVNIMS 119
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
VR ++ M + K GR V+ I+S A++P YS TK QL+ + ++ +
Sbjct: 120 GVRLTRSYLKKMIERKEGR---VIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELT- 175
Query: 198 EKHFNIRTMSLCPGLTDTPLPDHQGE 223
N+ ++ PG T T +
Sbjct: 176 -TGTNVTVNTIMPGSTLTEGVETMLN 200
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 124 bits (314), Expect = 4e-34
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 14/199 (7%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
++G VA++TG + G+G++ E A VA V E + +V
Sbjct: 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA--KVHVLE 62
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK------DNWEKTIDINFKGSVRG 141
LDV ++ + GG+D+LVNNAG+ +W + ID N G +
Sbjct: 63 LDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYM 122
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
A+ H+ + GTVV +SS + +Y TK A++E + E E+
Sbjct: 123 TRAALPHLLR----SKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTER-- 176
Query: 202 NIRTMSLCPGLTDTPLPDH 220
+R + + PG TDT L H
Sbjct: 177 GVRVVVIEPGTTDTELRGH 195
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 123 bits (311), Expect = 1e-33
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 19/204 (9%)
Query: 23 PYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDR 82
P +++ + V IVTG G+G+++ E +E A V + E K+ + G
Sbjct: 2 PGSMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG--T 59
Query: 83 VLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDI 133
+ +DV++ S + + + A+FGG+D LVNNA + K + ++K + +
Sbjct: 60 AISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSV 119
Query: 134 NFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMG 193
N G++ + M + GG +V SS A + Y K T+ +
Sbjct: 120 NLDGALWCTRAVYKKMTKRGGGA---IVNQSSTAAWLYS---NYYGLAKVGINGLTQQLS 173
Query: 194 DEFYEKHFNIRTMSLCPGLTDTPL 217
E + NIR ++ PG DT
Sbjct: 174 RELGGR--NIRINAIAPGPIDTEA 195
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 123 bits (312), Expect = 2e-33
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 12/196 (6%)
Query: 29 KGLVAIVTGGT-KGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
KG V +VT G+G + L E A V + + + G RV
Sbjct: 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQL-ADLGLGRVEAVV 79
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRG 141
DVT+ + + + + K G +DVLVNNAG+G + + W++ +++ +R
Sbjct: 80 CDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRA 139
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
A+ + GG +V +S + Y+ K +A T E E
Sbjct: 140 TRAALRYF--RGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEF-- 195
Query: 202 NIRTMSLCPGLTDTPL 217
+R ++ P +
Sbjct: 196 GVRINAVSPSIARHKF 211
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 123 bits (311), Expect = 2e-33
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 15/199 (7%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+ V ++TG + G+G+ AK+ G A E E G L
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG--TALAQV 59
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK------DNWEKTIDINFKGSVRG 141
LDVT++ S A +G +DVLVNNAGV D WE+ ID+N KG + G
Sbjct: 60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWG 119
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ M + R G ++ I S AL +Y TK A A ++ + E
Sbjct: 120 IGAVLPIM---EAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQEST---- 172
Query: 202 NIRTMSLCPGLTDTPLPDH 220
NIR + PG+ ++ L
Sbjct: 173 NIRVTCVNPGVVESELAGT 191
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 122 bits (308), Expect = 5e-33
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 20/228 (8%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFG--GTSVALGEQQEKEYSKEYGSDRVLFCPLD 89
VA+VTGG +G+G+ E + +A + K + + +F LD
Sbjct: 4 VAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLI-EAADQ-KAVFVGLD 61
Query: 90 VTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQL 143
VT++A+F++ +A K GG DVLVNNAG+ +++ ++ +N G
Sbjct: 62 VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121
Query: 144 LAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNI 203
A + G G ++ +S A+ + YSTTK A T+A E
Sbjct: 122 AASRKF--DELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAP--KGH 177
Query: 204 RTMSLCPGLTDTPLPDHQGEHPFIPELKPIIGNRSMFTYCTKMVSTIA 251
+ PG+ T + + I I + + + S+IA
Sbjct: 178 TVNAYAPGIVGTGMWEQ------IDAELSKINGKPIGENFKEYSSSIA 219
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 121 bits (307), Expect = 6e-33
Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 18/226 (7%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
VA+VTG +G+GK+ +K+ VA + A + E ++ G + +DV+
Sbjct: 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVS 61
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQLLA 145
++ +A+ GG DV+VNNAGV + +K +IN KG + G A
Sbjct: 62 DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAA 121
Query: 146 IEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRT 205
+E K G GG ++ S+ + +YS++K A T+ + I
Sbjct: 122 VEAF--KKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAP--LGITV 177
Query: 206 MSLCPGLTDTPLPDHQGEHPFIPELKPIIGNRSMFTYCTKMVSTIA 251
CPG+ TP+ I + + + I
Sbjct: 178 NGYCPGIVKTPMWAE------IDRQVSEAAGKPLGYGTAEFAKRIT 217
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 121 bits (306), Expect = 9e-33
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 17/197 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G V ++TG + GLGKS F E AKV S E K+ G +
Sbjct: 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKG 64
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DVT ++ N+ A +FG +DV++NNAG+ +W K ID N G+ G
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL---YSTTKKAQLAYTEAMGDEFYEK 199
AI++ + GTV+ +SS IP WPL Y+ +K TE + E+ K
Sbjct: 125 REAIKYFV--ENDIKGTVINMSSVHEKIP---WPLFVHYAASKGGMKLMTETLALEYAPK 179
Query: 200 HFNIRTMSLCPGLTDTP 216
IR ++ PG +TP
Sbjct: 180 --GIRVNNIGPGAINTP 194
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 121 bits (305), Expect = 1e-32
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 26/206 (12%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
+I+ VA+VTGG GLG + + L A+ V + + + ++ + G DR F
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQ-------VVVLDIRGEDVVADLG-DRARFA 57
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK----------DNWEKTIDINFK 136
DVT++A+ + G + ++VN AG G + + K +DIN
Sbjct: 58 AADVTDEAAVASAL-DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLV 116
Query: 137 GSVRGQLLAIEHMGQHK-----GGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEA 191
GS LA E + + + G ++ +S A YS +K + T
Sbjct: 117 GSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLP 176
Query: 192 MGDEFYEKHFNIRTMSLCPGLTDTPL 217
+ + IR M++ PGL DTPL
Sbjct: 177 IARDL--ASHRIRVMTIAPGLFDTPL 200
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 121 bits (306), Expect = 1e-32
Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 20/217 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G A++TG + G+GK + + A+VA + E G + L
Sbjct: 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE-IAGVGG-KALPIRC 88
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRGQ 142
DVT + + + GG+D+ V NAG+ + +++ D N G
Sbjct: 89 DVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTA 148
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
A M G GGT++ +S + I Y T+K A + T+AM E
Sbjct: 149 QAAARAM--VDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVEL--AP 204
Query: 201 FNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPIIGNR 237
IR S+ PG T L + + + + +
Sbjct: 205 HQIRVNSVSPGYIRTELVE------PLADYHALWEPK 235
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 120 bits (304), Expect = 2e-32
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 11/194 (5%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
K V I+TGG+ G+GK F KE A+V G + E+ + E + G ++L +
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPG--QILTVQM 62
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY----ED--KDNWEKTIDINFKGSVRGQ 142
DV N + + + KFG +D+L+NNA + ED + W I+I G+
Sbjct: 63 DVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCS 122
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
++ + G G ++ + + A G + K LA T+ + E+ K+
Sbjct: 123 QAIGKYW--IEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKY-G 179
Query: 203 IRTMSLCPGLTDTP 216
IR ++ PG +
Sbjct: 180 IRVNAIAPGPIERT 193
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 120 bits (304), Expect = 3e-32
Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 18/212 (8%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
V +VTG + G G++ E + V GT A + + Y DR LDVT
Sbjct: 7 VWLVTGASSGFGRAIAEAAVAAGDTVI--GT--ARRTEALDDLVAAYP-DRAEAISLDVT 61
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQLLA 145
+ + + A++G VDVLVNNAG + +++ G R
Sbjct: 62 DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRAL 121
Query: 146 IEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRT 205
+ M + G+VV ISS + + YS TK A +E + DE F I+
Sbjct: 122 LPQMRER---GSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEV--APFGIKV 176
Query: 206 MSLCPGLTDTPL--PDHQGEHPFIPELKPIIG 235
+ + PG T L P +G
Sbjct: 177 LIVEPGAFRTNLFGKGAAYFSEENPAYAEKVG 208
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 120 bits (303), Expect = 3e-32
Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 17/196 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G AIVTGG+KG+G + K A VA V + + +
Sbjct: 11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----NGGFAVEV 65
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
DVT +AS + KA GG D+L NAGV + + W+ D+N +G
Sbjct: 66 DVTKRASVDAAMQKAIDALGGFDLLCANAGV-STMRPAVDITDEEWDFNFDVNARGVFLA 124
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+A H G +V +S A + L YS +K A +T+A+ E K
Sbjct: 125 NQIACRHF--LASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPK-- 180
Query: 202 NIRTMSLCPGLTDTPL 217
NIR +CPG T +
Sbjct: 181 NIRVNCVCPGFVKTAM 196
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 120 bits (303), Expect = 3e-32
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 16/217 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G A+VTGG++G+G VE A V + ++ + +V
Sbjct: 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVC 65
Query: 89 DVTNQASFENIFVKAKAKFGG-VDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVR 140
D+++++ + + F G +++LVNNAG+ Y +D + + INF+ +
Sbjct: 66 DLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVED-YSLIMSINFEAAYH 124
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
+LA + + G VV ISS + + +Y TK A T + E+ +
Sbjct: 125 LSVLAHPFLKASERGN---VVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKD- 180
Query: 201 FNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPIIGNR 237
NIR + PG+ T L + + P E + +R
Sbjct: 181 -NIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDR 216
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 119 bits (301), Expect = 4e-32
Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 29/220 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
K +A++TGG G+G++ E F E A +A + + + G RVL
Sbjct: 6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLV---PAPEAEAAIRNLGR-RVLTVKC 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV+ E + + FG D+LVNNAG+ W+KT +IN
Sbjct: 62 DVSQPGDVEAFGKQVISTFGRCDILVNNAGI---YPLIPFDELTFEQWKKTFEINVDSGF 118
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFY 197
+ M ++ GR ++ ++S T + Y Y +TK A + +T A+ +
Sbjct: 119 LMAKAFVPGMKRNGWGR---IINLTSTTYWLKIEAYTH--YISTKAANIGFTRALASDLG 173
Query: 198 EKHFNIRTMSLCPGLTDTP----LPDHQGEHPFIPELKPI 233
+ I ++ P L T L+ I
Sbjct: 174 KD--GITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAI 211
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 118 bits (299), Expect = 7e-32
Identities = 35/204 (17%), Positives = 60/204 (29%), Gaps = 15/204 (7%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
+ V G +G + F E V G + E G R++
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG--RIVAR 61
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVR 140
LD N+ F+ A ++V + N G + K ++
Sbjct: 62 SLDARNEDEVTA-FLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFV 120
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
+ M H G + + +L G + +++ K A ++M E K
Sbjct: 121 SGRESARLMLAH---GQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPK- 176
Query: 201 FNIRTMSL-CPGLTDTPLPDHQGE 223
NI L DT + E
Sbjct: 177 -NIHVAHLIIDSGVDTAWVRERRE 199
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 119 bits (301), Expect = 9e-32
Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 25/220 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSD------- 81
+G VA VTG +G G+S +E A + + +
Sbjct: 10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETAD 69
Query: 82 -------RVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNW 127
R++ +DV + + + + G +D++V NAG+G +++W
Sbjct: 70 LVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDW 129
Query: 128 EKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLA 187
+ IDIN G + + HM GGRGG++++ SS L Y K +
Sbjct: 130 TEMIDINLAGVWKTVKAGVPHM--IAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVG 187
Query: 188 YTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFI 227
A G E + IR S+ P TP+ ++G
Sbjct: 188 LMRAFGVELGQH--MIRVNSVHPTHVKTPMLHNEGTFKMF 225
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 118 bits (297), Expect = 1e-31
Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 21/216 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+V G + +G++ F +E A V A G ++ G L
Sbjct: 7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKA 65
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
D+TN A E A KFG + LV+ AG K W + +D+N
Sbjct: 66 DLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLT 125
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALI---PGYLWPLYSTTKKAQLAYTEAMGDEFYE 198
A+ M +GG +V SS+ PG L Y+T+K A + +T + E
Sbjct: 126 AKTALPKM-----AKGGAIVTFSSQAGRDGGGPGAL--AYATSKGAVMTFTRGLAKEVGP 178
Query: 199 KHFNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPII 234
K IR ++CPG+ T D + +
Sbjct: 179 K---IRVNAVCPGMISTTFHDTFTKPEVRERVAGAT 211
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 118 bits (297), Expect = 2e-31
Identities = 49/197 (24%), Positives = 73/197 (37%), Gaps = 18/197 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
VAIVTG G+G++ F K A V E ++ G + +
Sbjct: 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI-RQAGG-KAIGLEC 68
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN--------WEKTIDINFKGSVR 140
+VT++ E + A +FG + VLVNNAG G +E +N R
Sbjct: 69 NVTDEQHREAVIKAALDQFGKITVLVNNAGGG---GPKPFDMPMSDFEWAFKLNLFSLFR 125
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
LA HM + GG ++ ISS Y ++K A T + +
Sbjct: 126 LSQLAAPHMQKAGGGA---ILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPM- 181
Query: 201 FNIRTMSLCPGLTDTPL 217
IR ++ PG T
Sbjct: 182 -GIRVNAIAPGAIKTDA 197
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 117 bits (296), Expect = 3e-31
Identities = 57/205 (27%), Positives = 85/205 (41%), Gaps = 19/205 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G +VTGGTKG+G+ F + A VA G S A + + + +V+
Sbjct: 9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GKVIGVQT 67
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV+++A + + +A +FGG+DV+ NAGV D +N G+
Sbjct: 68 DVSDRAQCDALAGRAVEEFGGIDVVCANAGVF---PDAPLATMTPEQLNGIFAVNVNGTF 124
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYL-WPLYSTTKKAQLAYTEAMGDEFYE 198
++ + GR VV+ SS T I GY W Y TK AQL + E
Sbjct: 125 YAVQACLDALIASGSGR---VVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAP 181
Query: 199 KHFNIRTMSLCPGLTDTPLPDHQGE 223
I ++ PG T GE
Sbjct: 182 H--KITVNAIMPGNIMTEGLLENGE 204
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 117 bits (296), Expect = 3e-31
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 19/199 (9%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+ ++TG + G+G++ F +E + + L + E+ K L
Sbjct: 14 SMKKLVVITGASSGIGEAIARRFSEEGHPL------LLLARRVER--LKALNLPNTLCAQ 65
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK------DNWEKTIDINFKGSVRG 141
+DVT++ +F+ +A+ +G D +VNNAG+ + + W++ D+N G + G
Sbjct: 66 VDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNG 125
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ M GT++ ISS Y TK A A +E + +E
Sbjct: 126 MQAVLAPMKARN---CGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAAS-- 180
Query: 202 NIRTMSLCPGLTDTPLPDH 220
N+R M++ P T L H
Sbjct: 181 NVRVMTIAPSAVKTELLSH 199
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 116 bits (294), Expect = 3e-31
Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 22/209 (10%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
+A+VT G + VE ++ V S A ++++ S+ G+
Sbjct: 3 IALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTI--------AL 54
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGV---------GYEDKDNWEKTIDINFKGSVRGQ 142
+ E + +D +V+N + + + + + +
Sbjct: 55 AEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLL 114
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
AI + G V+ I+S P PLY + A +A E+
Sbjct: 115 QSAIAPLRAAGGAS---VIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRD--G 169
Query: 203 IRTMSLCPGLTDTPLPDHQGEHPFIPELK 231
I ++ P + P + PEL+
Sbjct: 170 ILLYAIGPNFFNNPTYFPTSDWENNPELR 198
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 117 bits (296), Expect = 3e-31
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 16/214 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
K +VTGGTKG+G + VE F A + + + ++ K+ +V
Sbjct: 13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVC 70
Query: 89 DVTNQASFENIFVKAKAKFGG-VDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVR 140
D + + E + + FGG +D+L+NN G Y +D + I N + +
Sbjct: 71 DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAED-FSFHISTNLESAYH 129
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
LA + G ++ +SS ++ + +YS TK A + E+
Sbjct: 130 LSQLAHPLLKASGCGN---IIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASD- 185
Query: 201 FNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPII 234
IR ++ P + TPL + + F +
Sbjct: 186 -GIRANAVAPAVIATPLAEAVYDDEFKKVVISRK 218
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 117 bits (296), Expect = 4e-31
Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 19/209 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
VAIVTGG +G+G +A G A G G+ RV+F
Sbjct: 28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRA 86
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN--------WEKTIDINFKGSVR 140
D+ + +S + A+FG +D LVNNAG+ +D+ ++ + +N +G+V
Sbjct: 87 DLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVF 146
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYE 198
++ M +++ I+S +A++ P L Y +K A+++ + E
Sbjct: 147 FTQAVLKAMLASDARASRSIINITSVSAVMTSPERL--DYCMSKAGLAAFSQGLALRLAE 204
Query: 199 KHFNIRTMSLCPGLTDTP----LPDHQGE 223
I + PG+ + +
Sbjct: 205 T--GIAVFEVRPGIIRSDMTAAVSGKYDG 231
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 116 bits (294), Expect = 4e-31
Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 20/195 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G +VTG KG+G+ V+ A+V + A + +E + +
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG------IEPVCV 59
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+ + + E G VD+LVNNA V K+ ++++ ++N + ++
Sbjct: 60 DLGDWEATERAL----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVS 115
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ + G G +V +SS+ + +Y +TK A T+ M E
Sbjct: 116 QIVARGL--IARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPH--K 171
Query: 203 IRTMSLCPGLTDTPL 217
IR ++ P + T +
Sbjct: 172 IRVNAVNPTVVMTSM 186
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 117 bits (295), Expect = 5e-31
Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 11/199 (5%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
A++TG T G+G + K A + G + + S VL P
Sbjct: 24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA 83
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+T + ++ +FGG D+LVNNAGV + + W++ I +N S
Sbjct: 84 DMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTI 143
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
AI M + GR ++ I+S L+ Y K + T+ + E E
Sbjct: 144 RGAIPPMKKKGWGR---IINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAES--G 198
Query: 203 IRTMSLCPGLTDTPLPDHQ 221
+ S+CPG TPL + Q
Sbjct: 199 VTVNSICPGYVLTPLVEKQ 217
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 116 bits (294), Expect = 6e-31
Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 22/218 (10%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEK--EYSKEYGSDRVLF 85
+K V ++ GG K LG + F E + + K + ++ G+ +V
Sbjct: 9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVAL 67
Query: 86 CPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGS 138
D++N+ +F A+ +FG VD+ +N G K ++ IN K +
Sbjct: 68 YQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGK-VLKKPIVETSEAEFDAMDTINNKVA 126
Query: 139 VRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEF 196
A +HM G ++ I++ Y Y+ K YT A E
Sbjct: 127 YFFIKQAAKHM-----NPNGHIITIATSLLAAYTGFYS--TYAGNKAPVEHYTRAASKEL 179
Query: 197 YEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPII 234
++ I ++ PG DT Q K
Sbjct: 180 MKQ--QISVNAIAPGPMDTSFFYGQETKESTAFHKSQA 215
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 116 bits (293), Expect = 6e-31
Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 30/200 (15%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ V ++TG ++G+G V + + +V S K +
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS-----------IKPSADPDIHTVAG 75
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
D++ + + I + +FG +D LVNNAGV ++ + +N G
Sbjct: 76 DISKPETADRIVREGIERFGRIDSLVNNAGVF---LAKPFVEMTQEDYDHNLGVNVAGFF 132
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFY 197
A M + G +V I++ G L S TK A T ++ EF
Sbjct: 133 HITQRAAAEMLKQGSGH---IVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFS 189
Query: 198 EKHFNIRTMSLCPGLTDTPL 217
+R ++ PG+ TP+
Sbjct: 190 RS--GVRVNAVSPGVIKTPM 207
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 116 bits (294), Expect = 9e-31
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 18/206 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
KG VA VTG + G+G + E + + A VA S E+ E K YG
Sbjct: 33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHL-QKTYGV-HSKAYKC 90
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVG--------YEDKDNWEKTIDINFKGSVR 140
++++ S E + + FG +DV V NAGV ++ D+W K I ++ G
Sbjct: 91 NISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYY 150
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYE 198
+ ++ G +++ SS + I L Y+T K A +++ E+
Sbjct: 151 CSHNIGKIFKKNGKGS---LIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAP 207
Query: 199 KHFNIRTMSLCPGLTDTPLPDHQGEH 224
R ++ PG DT + D +
Sbjct: 208 ---FARVNTISPGYIDTDITDFASKD 230
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 116 bits (293), Expect = 1e-30
Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALG-------EQQEKEYSKEYGS 80
+ ++TG + G+GK+ + + + G + L E+ +K +E+ +
Sbjct: 31 LAKKTVLITGASAGIGKATALEY----LEASNGDMKLILAARRLEKLEELKKTIDQEFPN 86
Query: 81 DRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAG-------VGYEDKDNWEKTIDI 133
+V LD+T + +F +D+LVNNAG VG ++ + D
Sbjct: 87 AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDT 146
Query: 134 NFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMG 193
N + + G +V + S +Y +K A A+T+++
Sbjct: 147 NVTALINITQAVLPIFQAKN---SGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLR 203
Query: 194 DEFYEKHFNIRTMSLCPGLTDTPLPDH 220
E IR + + PGL +T
Sbjct: 204 KELINT--KIRVILIAPGLVETEFSLV 228
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 115 bits (290), Expect = 1e-30
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 20/195 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
GL A+VTG KG+G+ V+ AKV + + KE + +
Sbjct: 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG------IEPVCV 59
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+ + + E KA G VD+LVNNA + K+ ++++ +N + +
Sbjct: 60 DLGDWDATE----KALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVS 115
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ M G G++V +SS A + YS+TK A T+AM E
Sbjct: 116 QMVARDM--INRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPH--K 171
Query: 203 IRTMSLCPGLTDTPL 217
IR S+ P + T +
Sbjct: 172 IRVNSVNPTVVLTDM 186
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 114 bits (287), Expect = 1e-30
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 34/204 (16%)
Query: 31 LVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALG---EQQEKEYSKEYGSDRVLFCP 87
+ ++TG T GLG +F A G + L E ++E G R L P
Sbjct: 1 MRVLITGATGGLGGAFAR---------ALKGHDLLLSGRRAGALAELAREVG-ARAL--P 48
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRG 141
D+ ++ + + + G +D+LV+ G +D E+ + + +
Sbjct: 49 ADLADELEAKALL----EEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAF- 103
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
++H + +G V + + + Y+ K A AY EA E
Sbjct: 104 ---VLKHA---RFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKEL--LRE 155
Query: 202 NIRTMSLCPGLTDTPLPDHQGEHP 225
+ + + T L G P
Sbjct: 156 GVHLVLVRLPAVATGLWAPLGGPP 179
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 115 bits (291), Expect = 2e-30
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 28 IKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEK--EYSKEYGSD-RVL 84
+TG T G G++ F + + V G ++E+ + E + RVL
Sbjct: 19 HMSSTLFITGATSGFGEACARRFAEAGWSL------VLTGRREERLQALAGELSAKTRVL 72
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGV--GYE-----DKDNWEKTIDINFKG 137
LDV ++A+ +F + L+NNAG+ G + D D+W+ +D N KG
Sbjct: 73 PLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKG 132
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
+ L + + H G G ++V + S P +Y TK ++ + +
Sbjct: 133 LLYSTRLLLPRLIAH--GAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQ 190
Query: 198 EKHFNIRTMSLCPGLTDTPLPDH 220
+R +L PGL ++
Sbjct: 191 GT--GVRVTNLEPGLCESEFSLV 211
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 115 bits (291), Expect = 2e-30
Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 43/288 (14%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYS------KEYGSDR 82
+G ++GG++G+G + + + A VA S + +E G +
Sbjct: 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-Q 66
Query: 83 VLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFK 136
L D+ + + K +FGG+D+ VNNA ++ I +
Sbjct: 67 ALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVR 126
Query: 137 GSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWP---LYSTTKKAQLAYTEAMG 193
G+ I HM ++ +S L P W Y K +
Sbjct: 127 GTYAVSQSCIPHMKGRDNPH---ILTLSPPIRLEPK--WLRPTPYMMAKYGMTLCALGIA 181
Query: 194 DEFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPIIGNRSMFTYCTKM--VSTIA 251
+E + I + +L P T ++ ++G K + A
Sbjct: 182 EEL--RDAGIASNTLWPRTTVAT-----------AAVQNLLGGDEAMARSRKPEVYADAA 228
Query: 252 FLLLLSLAYWTQQGQAL--DNGLALTPPMGWMAWQRYRCNTDCDNYPD 297
+++L + +T G L ++ L G Y C + D
Sbjct: 229 YVVLNKPSSYT--GNTLLCEDVLLE---SGVTDLSVYDCVPGSELGVD 271
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 114 bits (288), Expect = 4e-30
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGG-TSVALGEQQEKEYSKEYGSDRVLFCP 87
KG VA+VTG T G+G + A + G A E+ + ++G +VL+
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDG 61
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRG 141
D++ + + A + G +D+LVNNAG+ + + W+ + +N G
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
A+ HM + GR ++ I+S L+ Y K + +T+ E +
Sbjct: 122 TAAALPHMKKQGFGR---IINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQ-- 176
Query: 202 NIRTMSLCPGLTDTPLPDHQ 221
I ++CPG TPL + Q
Sbjct: 177 GITANAICPGWVRTPLVEKQ 196
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 114 bits (289), Expect = 4e-30
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 21/212 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSD------- 81
+G VA +TG +G G++ E A + + L + +
Sbjct: 10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE 69
Query: 82 ----RVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTI 131
R++ +D + + A G +D++V NAGV +++ +
Sbjct: 70 AANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVM 129
Query: 132 DINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEA 191
DIN G+ + + +GGRGG++++ISS + Y+ +K A A
Sbjct: 130 DINVTGTWNTVMAGAPRI--IEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARA 187
Query: 192 MGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGE 223
E KH +IR S+ PG +TP+
Sbjct: 188 FAAE-LGKH-SIRVNSVHPGPVNTPMGSGDMV 217
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 113 bits (285), Expect = 8e-30
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 18/206 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ A+VTG ++G+GK+ + + + E ++ G +VL
Sbjct: 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKA 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRG 141
+V A + +F + FG +DV VNNA + +W+ T++IN K +
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAAS-GVLRPVMELEETHWDWTMNINAKALLFC 120
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
A + M ++ GG +V ISS ++ Y +K A A T + E K
Sbjct: 121 AQEAAKLMEKNGGGH---IVSISSLGSIRYLENY--TTVGVSKAALEALTRYLAVELSPK 175
Query: 200 HFNIRTMSLCPGLTDTPLPDHQGEHP 225
I ++ G DT H
Sbjct: 176 --QIIVNAVSGGAIDTDALKHFPNRE 199
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 111 bits (280), Expect = 1e-29
Identities = 33/210 (15%), Positives = 66/210 (31%), Gaps = 41/210 (19%)
Query: 30 GLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLD 89
+ ++ G + LG + E K+ + G S + +D
Sbjct: 3 AMKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDV--------------------TVD 42
Query: 90 VTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQL 143
+TN S + ++ + G VD +V+ G + TI G + L
Sbjct: 43 ITNIDSIKKMY----EQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVL 98
Query: 144 LAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNI 203
L I+ + G+ + + P + A A+ ++ E I
Sbjct: 99 LGIDSL-----NDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR---GI 150
Query: 204 RTMSLCPGLTDTPLPDHQGEHPFIPELKPI 233
R ++ P + + + PF P+
Sbjct: 151 RINTVSPNVLEESWDKLE---PFFEGFLPV 177
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 113 bits (286), Expect = 1e-29
Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 11/195 (5%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G VA +TGG GLGK A+ + + + ++ S + G+ +V
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN-KVHAIQC 83
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY----ED--KDNWEKTIDINFKGSVRGQ 142
DV + +N + G ++++NNA + E + W+ DI G+
Sbjct: 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVT 143
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
L + + K +G + I++ A ++ K A ++++ E+ +
Sbjct: 144 LEIGKQL--IKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEW--GKYG 199
Query: 203 IRTMSLCPGLTDTPL 217
+R + PG T
Sbjct: 200 MRFNVIQPGPIKTKG 214
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 112 bits (283), Expect = 2e-29
Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 18/202 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
IVTGG +G+G +F A VA S A + ++ KE+G +
Sbjct: 13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQC 71
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
DV+N + A G + L+ NAGV +++ D+N G
Sbjct: 72 DVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTC 131
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL-------YSTTKKAQLAYTEAMGDE 195
+ + + G++V+ SS ++ I Y+++K A + + E
Sbjct: 132 RAVAKLW--LQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAE 189
Query: 196 FYEKHFNIRTMSLCPGLTDTPL 217
+ IR +L PG +T
Sbjct: 190 W--ASAGIRVNALSPGYVNTDQ 209
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 114 bits (286), Expect = 2e-29
Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 25/199 (12%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTS------VALGEQQEKEYSKEYGSDRVLF 85
+ ++TG + G G+ E +V + A + ++++ +
Sbjct: 7 IILITGASSGFGRLTAEALAGAGHRVY--ASMRDIVGRNASNVEAIAGFARDND-VDLRT 63
Query: 86 CPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSV 139
LDV +Q S + + + G +DVL++NAG + + + DIN +
Sbjct: 64 LELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQ 123
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS---RTALIPGYLWPLYSTTKKAQLAYTEAMGDEF 196
R A+ HM + + G ++ ISS P Y K A A E
Sbjct: 124 RVNRAALPHMRRQ---KHGLLIWISSSSSAGGTPPY--LAPYFAAKAAMDAIAVQYAREL 178
Query: 197 YEKHFNIRTMSLCPGLTDT 215
+ I T + PG +
Sbjct: 179 --SRWGIETSIIVPGAFTS 195
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 112 bits (282), Expect = 3e-29
Identities = 51/286 (17%), Positives = 86/286 (30%), Gaps = 39/286 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYS------KEYGSDR 82
G +TG ++G+G + ++ A VA S + G +
Sbjct: 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG-Q 63
Query: 83 VLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFK 136
L D+ + FGG+D+LVNNA + ++ +N +
Sbjct: 64 GLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNAR 123
Query: 137 GSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL--YSTTKKAQLAYTEAMGD 194
GS + H+ Q ++ ++ +L P + Y+ K T +
Sbjct: 124 GSFVCAQACLPHLLQAPNPH---ILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAA 180
Query: 195 EFYEKHFNIRTMSLCPGLT-DTPLPDHQGEHPFIPELKPIIGNRSMFTYCTKMVSTIAFL 253
EF + +L P T + +P I M +
Sbjct: 181 EF--GPQGVAINALWPRTVIATDAINMLPGVDAAACRRPEI-----------MADAAHAV 227
Query: 254 LLLSLAYWTQQGQAL--DNGLALTPPMGWMAWQRYRCNTDCDNYPD 297
L A + GQ L D LA G Y + PD
Sbjct: 228 LTREAAGFH--GQFLIDDEVLAQA---GITDLSGYAVDPQRALLPD 268
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 112 bits (282), Expect = 4e-29
Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 21/219 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSD------- 81
+G VA +TG +G G+S E A + + + D
Sbjct: 14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVE 73
Query: 82 ----RVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTI 131
+ L LDV + A+ + +FG +DV+V NAGV + W+ I
Sbjct: 74 DQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVI 133
Query: 132 DINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEA 191
+N G+ R + M + G GG++V++SS L YS +K A T
Sbjct: 134 GVNLTGTWRTLRATVPAM--IEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNT 191
Query: 192 MGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPEL 230
+ E E IR S+ P +TP+ + +
Sbjct: 192 LAIELGEY--GIRVNSIHPYSVETPMIEPEAMMEIFARH 228
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 111 bits (281), Expect = 4e-29
Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 31/209 (14%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G +VTG G+G++ ++ F +E A + E+ E +
Sbjct: 5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDRE----ERLLAEAVAALE-AEAIAVVA 59
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV++ + E +F +A +FG + + + AGV WEK + +N GS
Sbjct: 60 DVSDPKAVEAVFAEALEEFGRLHGVAHFAGVA---HSALSWNLPLEAWEKVLRVNLTGSF 116
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTAL-IPGYLWPLYSTTKKAQLAYTEAMGDEFYE 198
A E + GG++V+ S L G Y+ K + + E
Sbjct: 117 LVARKAGEVL-----EEGGSLVLTGSVAGLGAFG--LAHYAAGKLGVVGLARTLALEL-- 167
Query: 199 KHFNIRTMSLCPGLTDTP----LPDHQGE 223
+R L PGL TP LP E
Sbjct: 168 ARKGVRVNVLLPGLIQTPMTAGLPPWAWE 196
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 111 bits (281), Expect = 4e-29
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 13/228 (5%)
Query: 16 DESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYS 75
D TE + V +VTGG++G+G + ++ +V +
Sbjct: 12 DLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAI 71
Query: 76 KEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWE 128
E G + P DV N A +F +FG +D LVNNAG+ + + E
Sbjct: 72 TESGG-EAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIE 130
Query: 129 KTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQL 186
+ + +N GS+ A+ M + G+GG +V +SS A++ + Y+ +K A
Sbjct: 131 RMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQ-YVDYAASKAAID 189
Query: 187 AYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPII 234
+T + E + IR ++ PG+ +T L G E+ P +
Sbjct: 190 TFTIGLAREVAAE--GIRVNAVRPGIIETDLHASGGLPDRAREMAPSV 235
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 111 bits (281), Expect = 8e-29
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 23/209 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+VTGGTKG+G+ F + A VA S E G+ V+ L
Sbjct: 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR-ELSSVTAELGELGAGNVIGVRL 98
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV++ S + FG +DV+ NAG+ + + +D+N KG+V
Sbjct: 99 DVSDPGSCADAARTVVDAFGALDVVCANAGI---FPEARLDTMTPEQLSEVLDVNVKGTV 155
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYL-WPLYSTTKKAQLAYTEAMGDEFYE 198
+ + GR V++ SS T + GY W Y +K AQL + E
Sbjct: 156 YTVQACLAPLTASGRGR---VILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAP 212
Query: 199 KHFNIRTMSLCPGLTDTP----LPDHQGE 223
+ + ++ PG T + +
Sbjct: 213 R--GVTVNAILPGNILTEGLVDMGEEYIS 239
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 110 bits (278), Expect = 8e-29
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 31 LVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEK--EYSKEYGSDRVLFCPL 88
++ +VTG T G G+ F+++ KV +A G +QE+ E E G D + L
Sbjct: 1 MIVLVTGATAGFGECITRRFIQQGHKV------IATGRRQERLQELKDELG-DNLYIAQL 53
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGV--GYE-----DKDNWEKTIDINFKGSVRG 141
DV N+A+ E + A++ +D+LVNNAG+ G E ++WE ID N KG V
Sbjct: 54 DVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYM 113
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
+ M + G ++ I S P +Y TK ++ + + +
Sbjct: 114 TRAVLPGMVERN---HGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGT-- 168
Query: 202 NIRTMSLCPGLTDT 215
+R + PGL
Sbjct: 169 AVRVTDIEPGLVGG 182
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 111 bits (280), Expect = 9e-29
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 28/203 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQE-----KEYSKEYGSDRV 83
K A+VTGG G+G++ + +E A VA L ++E K +E G +
Sbjct: 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAI----NYLPAEEEDAQQVKALIEECGR-KA 102
Query: 84 LFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKD-------NWEKTIDINFK 136
+ P D+++++ ++ KA+ GG+D+L AG + +++T +N
Sbjct: 103 VLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVF 162
Query: 137 GSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGD 194
AI + +G +++ SS A P L Y+ TK A L Y+ +
Sbjct: 163 ALFWITQEAIPLL-----PKGASIITTSSIQAYQPSPHLL--DYAATKAAILNYSRGLAK 215
Query: 195 EFYEKHFNIRTMSLCPGLTDTPL 217
+ EK IR + PG T L
Sbjct: 216 QVAEK--GIRVNIVAPGPIWTAL 236
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 110 bits (277), Expect = 1e-28
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 14/196 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G A+VTG +GLG ++ E A+V L + +++
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAF 65
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVRG 141
DVT++ + E F K A+ VD+L+NNAG+ E ++ W+K ID N +
Sbjct: 66 DVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELEN-WQKVIDTNLTSAFLV 124
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
A + M GG ++ I S T+ Y+ K T +M E+ +
Sbjct: 125 SRSAAKRMI--ARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQF-- 180
Query: 202 NIRTMSLCPGLTDTPL 217
NI+T ++ PG T +
Sbjct: 181 NIQTNAIGPGYILTDM 196
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 110 bits (277), Expect = 1e-28
Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 20/198 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G A VTG G+G F A++ A ++ ++E G+
Sbjct: 10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRA----AQELGAAVAARIVA 65
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVRG 141
DVT+ + V +LVN+AG+ +D W + + +N G
Sbjct: 66 DVTDAEAMTAA-AAEAEAVAPVSILVNSAGIARLHDALETDDAT-WRQVMAVNVDGMFWA 123
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
M G +V + S + I Y +K A T A+ E+ +
Sbjct: 124 SRAFGRAMVARGAGA---IVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGR 180
Query: 200 HFNIRTMSLCPGLTDTPL 217
+R +L PG T +
Sbjct: 181 --GVRVNALAPGYVATEM 196
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 110 bits (276), Expect = 2e-28
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 24/204 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G V +VTG ++G+G+ K A V G + +E G + +
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGG--QCVPVVC 61
Query: 89 DVTNQASFENIFVKAKA-KFGGVDVLVNNAGVGYE-------------DKDNWEKTIDIN 134
D + ++ ++F + + G +DVLVNNA G + W+ ++
Sbjct: 62 DSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVG 121
Query: 135 FKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYL-WPLYSTTKKAQLAYTEAMG 193
+G + M G +V+ISS +L Y+ Y K A
Sbjct: 122 LRGHYFCSVYGARLMVPAGQGL---IVVISSPGSL--QYMFNVPYGVGKAACDKLAADCA 176
Query: 194 DEFYEKHFNIRTMSLCPGLTDTPL 217
E + + +SL PG+ T L
Sbjct: 177 HEL--RRHGVSCVSLWPGIVQTEL 198
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 110 bits (277), Expect = 2e-28
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 12/194 (6%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ VA +TGG G+G E F++ S+ ++ + G R L +
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGR-RCLPLSM 84
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY----ED--KDNWEKTIDINFKGSVRGQ 142
DV + +A +FG +D+L+N A + + ++ +DI+ G+
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVS 144
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ E + GG +V I++ L + K A A T + E+ N
Sbjct: 145 RVLYEKFFRDHGGV---IVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEW--GPQN 199
Query: 203 IRTMSLCPGLTDTP 216
IR SL PG
Sbjct: 200 IRVNSLAPGPISGT 213
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 110 bits (278), Expect = 2e-28
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 21/212 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSD------- 81
+G VA +TG +G G+S +E A + L + + + ++
Sbjct: 27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA 86
Query: 82 ---RVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTI 131
R++ +DV + + + + G +D+++ NA + E D W I
Sbjct: 87 LGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMI 146
Query: 132 DINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEA 191
D+N G+ +AI H+ G RGG++V SS L Y +K
Sbjct: 147 DVNLNGAWITARVAIPHI--MAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRT 204
Query: 192 MGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGE 223
M E + NIR +CP TP+ ++
Sbjct: 205 MALELGPR--NIRVNIVCPSSVATPMLLNEPT 234
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 110 bits (276), Expect = 3e-28
Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 34/222 (15%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAF-------GGTSVALGEQQE----KEYSKE 77
+ V +VTGG +G G+S +E A + L ++ ++
Sbjct: 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK 68
Query: 78 YGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY----EDKDNWEKTIDI 133
G + +DV ++A+ A A+FG +DV+V NAG+ + D+
Sbjct: 69 TGR-KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDV 127
Query: 134 NFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL-----------YSTTK 182
+F G + A+ ++ G +++ S LI P YS K
Sbjct: 128 DFVGVINTVHAALPYLTS-----GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAK 182
Query: 183 KAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEH 224
+ +YT + + + +IR + P +T + + +
Sbjct: 183 QLVDSYTLQLAAQLAPQ--SIRANVIHPTNVNTDMLNSAPMY 222
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 109 bits (275), Expect = 4e-28
Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 28/231 (12%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVA-------FGGTSVALGEQQE----KEYSKE 77
G VA +TG +G G++ + A + L +E + ++
Sbjct: 12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED 71
Query: 78 YGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY--EDKDNWEKTIDINF 135
GS R++ DV ++ S + G +D++V NAG+ D W ID+N
Sbjct: 72 IGS-RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNL 130
Query: 136 KGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL----YSTTKKAQLAYTEA 191
G +AI + K G GG++V+ISS L Y K +
Sbjct: 131 TGVYHTIKVAIPTL--VKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRV 188
Query: 192 MGDEFYEKHFNIRTMSLCPGLTDTPL------PDHQGEHPFIPELKPIIGN 236
+ + IR S+ P +TP+ + + + +GN
Sbjct: 189 YANLLAGQ--MIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGN 237
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 108 bits (273), Expect = 4e-28
Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 15/199 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
KG A+VTG T G+G + + A + G E +G + + P
Sbjct: 3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIA---RHG-VKAVHHPA 58
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRGQ 142
D+++ A E +F A+ +FGGVD+LVNNAG+ + ++W+K I +N G
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGT 118
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
LA+ M GR ++ I+S L+ Y K + T+ +G E N
Sbjct: 119 RLALPGMRARNWGR---IINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATS--N 173
Query: 203 IRTMSLCPGLTDTPLPDHQ 221
+ ++CPG TPL Q
Sbjct: 174 VTCNAICPGWVLTPLVQKQ 192
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 109 bits (276), Expect = 4e-28
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQE----KEYSKEYGSDRVL 84
KG ++TGG G+G++ F KE A +A L E+ + K+Y ++ G + +
Sbjct: 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAI----AYLDEEGDANETKQYVEKEGV-KCV 100
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKD-------NWEKTIDINFKG 137
P D++++ ++I + + G +++LVNN Y + EKT IN
Sbjct: 101 LLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFS 160
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
A+ H+ +G ++ +S A YS TK A +A+T ++
Sbjct: 161 YFHVTKAALSHL-----KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLV 215
Query: 198 EKHFNIRTMSLCPGLTDTPL 217
+K IR + PG TPL
Sbjct: 216 QK--GIRVNGVAPGPIWTPL 233
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 111 bits (278), Expect = 4e-28
Identities = 58/287 (20%), Positives = 99/287 (34%), Gaps = 42/287 (14%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGG-TSVALGEQQEKEYS-----KEYGSDR 82
G +TG ++G+GK+ K+ A + T+ + Y+ + G +
Sbjct: 44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG-K 102
Query: 83 VLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFK 136
L C +DV ++ KA KFGG+D+LVNNA + +++N +
Sbjct: 103 ALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTR 162
Query: 137 GSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYL--WPLYSTTKKAQLAYTEAMGD 194
G+ I ++ + K ++ IS L P + Y+ K Y M +
Sbjct: 163 GTYLASKACIPYLKKSKVAH---ILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAE 219
Query: 195 EFYEKHFNIRTMSLCPGLT-DTPLPDHQGEHPFIPEL-KPIIGNRSMFTYCTKMVSTIAF 252
EF I +L P T D G + K I ++ A+
Sbjct: 220 EF---KGEIAVNALWPKTAIHTAAMDMLGGPGIESQCRKVDI------------IADAAY 264
Query: 253 LLLLSLAYWTQQGQAL--DNGLALTPPMGWMAWQRYRCNTDCDNYPD 297
+ +T G + +N L G + Y PD
Sbjct: 265 SIFQKPKSFT--GNFVIDENILKEE---GIENFDVYAIKPGHPLQPD 306
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 108 bits (272), Expect = 1e-27
Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 29/232 (12%)
Query: 18 STEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSK 76
S+ P ++ A+VTG K +G++ + +V S E +K
Sbjct: 11 SSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK 70
Query: 77 EYGSDRVLFCPLDVTN----QASFENIFVKAKAKFGGVDVLVNNAGVGY---------ED 123
E + + C D+TN AS E I FG DVLVNNA Y ED
Sbjct: 71 ERS-NTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHED 129
Query: 124 K-------DNWEKTIDINFKGSVRGQLLAIEHMGQHKGG---RGGTVVMISSRTALIPGY 173
+ I N + + ++V + P
Sbjct: 130 NSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCM 189
Query: 174 LWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTP--LPDHQGE 223
+ LY+ K A + T++ E IR + PG++ P + + + +
Sbjct: 190 AFSLYNMGKHALVGLTQSAALELAPY--GIRVNGVAPGVSLLPVAMGEEEKD 239
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 106 bits (267), Expect = 3e-27
Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 38/203 (18%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
A+VTGG GLG++ + V + + + + + +++ DVT
Sbjct: 4 SALVTGGASGLGRAAALALKARGYR-------VVVLDLRRE-------GEDLIYVEGDVT 49
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK----------DNWEKTIDINFKGSVRG 141
+ +A+ + +V+ AGVG +K +++ + +++N G+
Sbjct: 50 REEDVRRAVARAQE-EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNV 108
Query: 142 QLLAIEHMGQHK---GGRGGTVVMISSRTALIPGYLWPL----YSTTKKAQLAYTEAMGD 194
LA M ++ G+ G +V +S + + + Y+ +K +A T
Sbjct: 109 LRLAAWAMRENPPDAEGQRGVIVNTAS----VAAFEGQIGQAAYAASKGGVVALTLPAAR 164
Query: 195 EFYEKHFNIRTMSLCPGLTDTPL 217
E + IR +++ PGL DTPL
Sbjct: 165 EL--AGWGIRVVTVAPGLFDTPL 185
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 106 bits (268), Expect = 3e-27
Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G VA+VTGG++GLG + + V ++ + ++ +++YG +
Sbjct: 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRC 78
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVRG 141
DV+N + + K KFG +D +VN AG+ + + + + I++N G+
Sbjct: 79 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDE-FRQVIEVNLFGTYYV 137
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLW-PLYSTTKKAQLAYTEAMGDEFYEKH 200
A + + ++ I S T Y+ +K + T+A+ E+
Sbjct: 138 CREAFSLLRESDNPS---IINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRY- 193
Query: 201 FNIRTMSLCPGLTDTPL 217
IR + PG T +
Sbjct: 194 -GIRVNVIAPGWYRTKM 209
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 106 bits (266), Expect = 4e-27
Identities = 46/214 (21%), Positives = 76/214 (35%), Gaps = 33/214 (15%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G VTG KG+G + F++ AKV G A ++Q +
Sbjct: 6 SGKNVWVTGAGKGIGYATALAFVEAGAKVT--GFDQAFTQEQY----------PFATEVM 53
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV + A + + A+ +D LVN AG+ + W++T +N G+
Sbjct: 54 DVADAAQVAQVCQRLLAETERLDALVNAAGIL---RMGATDQLSKEDWQQTFAVNVGGAF 110
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
+ + +GG +V ++S A P Y +K A + ++G E
Sbjct: 111 NLFQQTMNQFRRQRGGA---IVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGS 167
Query: 200 HFNIRTMSLCPGLTDTP----LPDHQGEHPFIPE 229
+R + PG TDT L
Sbjct: 168 --GVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIR 199
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 106 bits (267), Expect = 7e-27
Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 15/197 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSD---RVLF 85
+G VAIVTGG G+GK+ V+ L+ + V + + E RV+
Sbjct: 17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76
Query: 86 CPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY----ED--KDNWEKTIDINFKGSV 139
++ N+ N+ FG ++ LVNN G + E W ++ N G+
Sbjct: 77 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 136
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
+ GG +V I L + T+++ E+
Sbjct: 137 YMCKAVYSSWMKEHGGS---IVNIIV-PTKAGFPLAVHSGAARAGVYNLTKSLALEW--A 190
Query: 200 HFNIRTMSLCPGLTDTP 216
IR + PG+ +
Sbjct: 191 CSGIRINCVAPGVIYSQ 207
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 105 bits (265), Expect = 8e-27
Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 18/207 (8%)
Query: 29 KGLVAIVTG--GTKGLGKSFVEHFLKEHAKVAFGG-TSVALGEQQEKEYSKEYGSDRVLF 85
KG V +VTG G KG+G + A VA + E+ KE K YG +
Sbjct: 19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGI-KAKA 77
Query: 86 CPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSV 139
V + S E + A FG +D + NAG + W + ++ G+
Sbjct: 78 YKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTF 137
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL--YSTTKKAQLAYTEAMGDEFY 197
H + G +V+ +S + I + Y+ K + ++ +E+
Sbjct: 138 HCAKAVGHHFKERGTGS---LVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWR 194
Query: 198 EKHFNIRTMSLCPGLTDTPLPDHQGEH 224
+ R S+ PG DT L D +
Sbjct: 195 D---FARVNSISPGYIDTGLSDFVPKE 218
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 105 bits (264), Expect = 9e-27
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 29/212 (13%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
++ G A+VTG +G+GK+ + A V + + K + G +
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDIN----AEGAKAAAASIG-KKARAI 57
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKG 137
D+++ S + +F + +A GG+D+LVNNA + W K ID+N G
Sbjct: 58 AADISDPGSVKALFAEIQALTGGIDILVNNASI---VPFVAWDDVDLDHWRKIIDVNLTG 114
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDE 195
+ + M G+ G V+ I+S T P Y K + +T A+ E
Sbjct: 115 TFIVTRAGTDQM--RAAGKAGRVISIASNTFFAGTPNM--AAYVAAKGGVIGFTRALATE 170
Query: 196 FYEKHFNIRTMSLCPGLTDTP----LPDHQGE 223
+ NI ++ PGL ++ P ++
Sbjct: 171 LGKY--NITANAVTPGLIESDGVKASPHNEAF 200
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 104 bits (263), Expect = 1e-26
Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 29/199 (14%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
IVTGG G+GK FL+ KV F KE + + DV
Sbjct: 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN------LFYFHGDVA 57
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSVRGQ 142
+ + + A K +DVLVNNA G ++ + + K
Sbjct: 58 DPLTLKKFVEYAMEKLQRIDVLVNNACRG---SKGILSSLLYEEFDYILSVGLKAPYELS 114
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYEKH 200
L + + ++K G ++ I+S A P Y++ K +A T A+
Sbjct: 115 RLCRDELIKNK----GRIINIASTRAFQSEPDS--EAYASAKGGIVALTHALAMSLGP-- 166
Query: 201 FNIRTMSLCPGLTDTPLPD 219
++ + PG +
Sbjct: 167 -DVLVNCIAPGWINVTEQQ 184
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 105 bits (264), Expect = 1e-26
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 29/217 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCP 87
G VA+ TG +G+G+ + A V G+S E+ E K+ G+ + +
Sbjct: 20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAE-LKKLGA-QGVAIQ 77
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRG 141
D++ + +F KA + FGG+D +++N+G+ ++ ++K ++N RG
Sbjct: 78 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLN----TRG 133
Query: 142 QLL----AIEHMGQHKGGRGGTVVMISSRTALI---PGYLWPLYSTTKKAQLAYTEAMGD 194
Q ++H RGG +++ SS A++ P + LY+ +K A + A
Sbjct: 134 QFFVAQQGLKHC-----RRGGRIILTSSIAAVMTGIPNHA--LYAGSKAAVEGFCRAFAV 186
Query: 195 EFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPELK 231
+ K + + PG T + D H K
Sbjct: 187 DCGAK--GVTVNCIAPGGVKTDMFDENSWHYAPGGYK 221
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 104 bits (262), Expect = 2e-26
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCP 87
VAIVTG ++G+G + + V A E+ + G + L
Sbjct: 26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG--KALTAQ 83
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVR 140
DV++ A+ +F A+ FGGVDVLVNNAG+ +++ I +N KG+
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGI-MPLTTIAETGDAVFDRVIAVNLKGTFN 142
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYE 198
A + + GG ++ +S+ + P Y +Y+ K A T + E
Sbjct: 143 TLREAAQRL-----RVGGRIINMSTSQVGLLHPSY--GIYAAAKAGVEAMTHVLSKELRG 195
Query: 199 KHFNIRTMSLCPGLTDTPL 217
+ +I ++ PG T T L
Sbjct: 196 R--DITVNAVAPGPTATDL 212
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 104 bits (261), Expect = 3e-26
Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 18/196 (9%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
++TG ++ +G L+ +V + E E +
Sbjct: 26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRT-------EHASVTELRQAGAVALYG 78
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY-----EDKDNWEKTIDINFKGSVRGQL 143
D + + K + + +V+NA E+ DN+ + ++ L
Sbjct: 79 DFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINL 138
Query: 144 LAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNI 203
+ +V IS Y TK + T + F +
Sbjct: 139 HCEPLL---TASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAPL---V 192
Query: 204 RTMSLCPGLTDTPLPD 219
+ + P L D
Sbjct: 193 KVNGIAPALLMFQPKD 208
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 104 bits (261), Expect = 3e-26
Identities = 51/242 (21%), Positives = 79/242 (32%), Gaps = 59/242 (24%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEH-AKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDV 90
VA+VTGG KG+G + V + V V G+ ++ E S F LD+
Sbjct: 6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS--PRFHQLDI 63
Query: 91 TNQASFENIFVKA-KAKFGGVDVLVNNAGVGY------EDKDNWEKTIDINFKGSVRGQL 143
+ S + ++GG+DVLVNNAG+ + E T+ NF G+
Sbjct: 64 DDLQSIRA-LRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 122
Query: 144 LAIEHMGQHKGGRGGTVVMISSRTALIP-------------------------------- 171
+ + GR VV +SS ++
Sbjct: 123 ELLPLI--KPQGR---VVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVED 177
Query: 172 ---------GYLWPLYSTTKKAQLAYTEAMGDEFYE--KHFNIRTMSLCPGLTDTPLPDH 220
G+ Y TK + + E K I + CPG T +
Sbjct: 178 TKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP 237
Query: 221 QG 222
+
Sbjct: 238 KA 239
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 104 bits (261), Expect = 4e-26
Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 29/210 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCP 87
+G VA+VTG +G+G+ + KV S E+ K+ GS
Sbjct: 28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAI-KKNGS-DAACVK 85
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDINFKGSVRG 141
+V +F +A FG +D++ +N+GV + +++ IN RG
Sbjct: 86 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTIN----TRG 141
Query: 142 QLL----AIEHMGQHKGGRGGTVVMISSRTALI---PGYLWPLYSTTKKAQLAYTEAMGD 194
Q A +H+ GG ++++ S T P + +YS +K A + M
Sbjct: 142 QFFVAREAYKHL-----EIGGRLILMGSITGQAKAVPKHA--VYSGSKGAIETFARCMAI 194
Query: 195 EFYEKHFNIRTMSLCPGLTDTPLPDHQGEH 224
+ +K I + PG T +
Sbjct: 195 DMADK--KITVNVVAPGGIKTDMYHAVCRE 222
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 103 bits (260), Expect = 5e-26
Identities = 45/225 (20%), Positives = 77/225 (34%), Gaps = 35/225 (15%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAF-GGTSVALGEQQEKEYSKEYGSDRVLFCP 87
+ A++TGG + +G S ++ +V S ++ E + + C
Sbjct: 10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCK 68
Query: 88 LDVTNQAS----FENIFVKAKAKFGGVDVLVNNAGVGYEDK------------------D 125
D++ +S E+I + FG DVLVNNA Y
Sbjct: 69 GDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASA-YYPTPLLPGDDTNGAADAKPIDA 127
Query: 126 NWEKTIDINFKGSVRGQLLAIEHMGQHKG--GRGGTVVMISSRTALI--PGYLWPLYSTT 181
+ N + G+ R +VV + + PG+ +Y+
Sbjct: 128 QVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGF--CVYTMA 185
Query: 182 KKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTP--LPDHQGEH 224
K A T A E + +IR ++ PGL+ P +P E
Sbjct: 186 KHALGGLTRAAALELAPR--HIRVNAVAPGLSLLPPAMPQETQEE 228
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 103 bits (258), Expect = 8e-26
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 8 QAGVSL-TWDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVA 65
+GV L T + + ++ + G A VTGG++G+G + + E A VA +
Sbjct: 8 SSGVDLGTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE 67
Query: 66 LGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE--- 122
+ E + G R + D + + E + GG+D+LVN+AG+ +
Sbjct: 68 RAQAVVSEIEQAGG--RAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPL 125
Query: 123 ---DKDNWEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI---PGYLWP 176
++++ + +NF+ A H+ G GG ++ I S A + PG
Sbjct: 126 EETTVADFDEVMAVNFRAPFVAIRSASRHL-----GDGGRIITIGSNLAELVPWPGI--S 178
Query: 177 LYSTTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEH 224
LYS +K A T+ + + + I + PG TDT + G+H
Sbjct: 179 LYSASKAALAGLTKGLARDLGPR--GITVNIVHPGSTDTDMNPADGDH 224
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 102 bits (256), Expect = 2e-25
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 29/215 (13%)
Query: 17 ESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYS 75
E+ E ++ G VA+VTG +G+G + H + AKV S E+ E
Sbjct: 5 ENASETYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSE-I 63
Query: 76 KEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEK 129
K GS + D+ +F +A A FG +D+ V+N+GV ++ +++
Sbjct: 64 KALGS-DAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDR 122
Query: 130 TIDINFKGSVRGQLL----AIEHMGQHKGGRGGTVVMISSRTAL---IPGYLWPLYSTTK 182
+N RGQ A H+ +GGR +V+ SS T+ +P + LYS +K
Sbjct: 123 VFSLN----TRGQFFVAREAYRHLT--EGGR---IVLTSSNTSKDFSVPKHS--LYSGSK 171
Query: 183 KAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPL 217
A ++ + +K I ++ PG T T +
Sbjct: 172 GAVDSFVRIFSKDCGDK--KITVNAVAPGGTVTDM 204
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 100 bits (251), Expect = 6e-25
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 24/211 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
A++T GTKGLGK E L + V S + KE K+ +R+ F
Sbjct: 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVE-ERLQFVQA 64
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVG-YEDK-------DNWEKTIDINFKGSVR 140
DVT + I +A + FG +D L+NNAG +E K D W + I N
Sbjct: 65 DVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFH 124
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTAL-IPGYLWPL---YSTTKKAQLAYTEAMGDEF 196
L + M + GR ++ + A PG W ++ K ++ T+ + E
Sbjct: 125 LLKLVVPVMRKQNFGR---IINYGFQGADSAPG--WIYRSAFAAAKVGLVSLTKTVAYEE 179
Query: 197 YEKHFNIRTMSLCPGLTDTP----LPDHQGE 223
E I +CPG +
Sbjct: 180 AEY--GITANMVCPGDIIGEMKEATIQEARQ 208
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 100 bits (252), Expect = 7e-25
Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 15/206 (7%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G +A+VTGG++G+G+ + L+ A+V S P
Sbjct: 28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---DCQAIPA 84
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVR- 140
D++++A + +D+LVNNAG Y WEK + +N
Sbjct: 85 DLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSG-WEKVMQLNVTSVFSC 143
Query: 141 GQLLAIEHMGQHKGGRGGTVVMISSRTALI-PGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
Q L V+ I S + G Y +K A + + E +
Sbjct: 144 IQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGE 203
Query: 200 HFNIRTMSLCPGLTDTPLPDHQGEHP 225
+I + PG + + H P
Sbjct: 204 --HINVNVIAPGRFPSRMTRHIANDP 227
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 100 bits (252), Expect = 1e-24
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 28/209 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAF-------GGTSVALGEQQE----KEYSKE 77
+G VA +TG +G G++ ++ A + A G +E +E
Sbjct: 45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE 104
Query: 78 YGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WE 128
G R++ DV + AS + + +A A+FG +D+LV+N G+ W
Sbjct: 105 QGR-RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS---NQGEVVSLTDQQWS 160
Query: 129 KTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAY 188
+ N G+ + M + G+GG+V+ +SS L Y+ +K
Sbjct: 161 DILQTNLIGAWHACRAVLPSM--IERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGL 218
Query: 189 TEAMGDEFYEKHFNIRTMSLCPGLTDTPL 217
++ +E NIR S+ PG +T +
Sbjct: 219 MLSLANEVGRH--NIRVNSVNPGAVNTEM 245
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 99.1 bits (248), Expect = 1e-24
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G V++VTG T+G+G++ E + V GTS + +E + +YG + +
Sbjct: 6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG-VKAHGVEM 64
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
++ ++ S F + G+D+LVNNAG+ +D WE+ + +N G+
Sbjct: 65 NLLSEESINKAFEEIYNLVDGIDILVNNAGI---TRDKLFLRMSLLDWEEVLKVNLTGTF 121
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
++ M + + GR +V ISS
Sbjct: 122 LVTQNSLRKMIKQRWGR---IVNISS 144
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 98.8 bits (247), Expect = 2e-24
Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 22/193 (11%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
AIVT G + VA S ++ E L
Sbjct: 3 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQ--------LKPM 54
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGV--------GYEDKDNWEKTIDINFKGSVRGQL 143
++ + + +G VDVLV+N Y +D + ++
Sbjct: 55 SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVED-YRGAVEALQIRPFALVN 113
Query: 144 LAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNI 203
M + K G ++ I+S T P Y++ + A+ E E NI
Sbjct: 114 AVASQMKKRKSGH---IIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEY--NI 168
Query: 204 RTMSLCPGLTDTP 216
++ P +
Sbjct: 169 PVFAIGPNYLHSE 181
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 98.9 bits (247), Expect = 3e-24
Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 27/203 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ A VTG + G+G + V V
Sbjct: 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH--DVDGSSC 80
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DVT+ A +FG + +LVN+AG + W +D N G
Sbjct: 81 DVTSTDEVHAAVAAAVERFGPIGILVNSAGR---NGGGETADLDDALWADVLDTNLTGVF 137
Query: 140 RG--QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL---YSTTKKAQLAYTEAMGD 194
R ++L M + GR +V I+S G Y+ +K + +T+++G
Sbjct: 138 RVTREVLRAGGMREAGWGR---IVNIASTGGKQ-GV--MYAAPYTASKHGVVGFTKSVGF 191
Query: 195 EFYEKHFNIRTMSLCPGLTDTPL 217
E + I ++CPG +TP+
Sbjct: 192 ELAKT--GITVNAVCPGYVETPM 212
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 99.2 bits (248), Expect = 4e-24
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 19/218 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
KG +A+VTG + G+G + + K A + F + L ++ Y
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGI--NAHGYVC 90
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAG-------VGYEDKDNWEKTIDINFKGSVRG 141
DVT++ + + + +++ G +D+LVNNAG + + + IDI+
Sbjct: 91 DVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQ-FRQVIDIDLNAPFIV 149
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
I M + G+ ++ I S + + Y+ K T+ + E+ E
Sbjct: 150 SKAVIPSMIKKGHGK---IINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEA-- 204
Query: 202 NIRTMSLCPGLTDT----PLPDHQGEHPFIPELKPIIG 235
NI+ + PG T PL + Q + P + II
Sbjct: 205 NIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFIIA 242
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 97.2 bits (243), Expect = 7e-24
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
KG AIVTG ++GLGK+ A + G+ + E K G V+
Sbjct: 4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAG-INVVVAKG 62
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV N EN+ A FG +D+LVNNAG+ +D W+ ++ N K +
Sbjct: 63 DVKNPEDVENMVKTAMDAFGRIDILVNNAGI---TRDTLMLKMSEKDWDDVLNTNLKSAY 119
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
+ M + K G+ ++ I+S
Sbjct: 120 LCTKAVSKIMLKQKSGK---IINITS 142
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 97.2 bits (243), Expect = 8e-24
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
VA+VTG ++G+G + A V TS A E+ E ++ + L
Sbjct: 4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARGLVL 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
++++ S +N F + KA+ +D+LVNNAG+ +DN W+ I+ N
Sbjct: 62 NISDIESIQNFFAEIKAENLAIDILVNNAGI---TRDNLMMRMSEDEWQSVINTNLSSIF 118
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
R + M + + GR ++ I S
Sbjct: 119 RMSKECVRGMMKKRWGR---IISIGS 141
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 97.7 bits (244), Expect = 1e-23
Identities = 54/204 (26%), Positives = 76/204 (37%), Gaps = 27/204 (13%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
VA+VTG T G+G KE +V KE +E G
Sbjct: 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL-REAGV-EADGR 76
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKG 137
DV + E + ++G VDVLVNNAG W ++ N G
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP---GGGATAELADELWLDVVETNLTG 133
Query: 138 SVRG--QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPL---YSTTKKAQLAYTEAM 192
R Q+L M + GR +V I+S G YS +K + +T+A+
Sbjct: 134 VFRVTKQVLKAGGMLERGTGR---IVNIASTGGKQ-GV--VHAAPYSASKHGVVGFTKAL 187
Query: 193 GDEFYEKHFNIRTMSLCPGLTDTP 216
G E I ++CPG +TP
Sbjct: 188 GLELART--GITVNAVCPGFVETP 209
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 96.6 bits (241), Expect = 1e-23
Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 29/208 (13%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
+VTG +G+G V+ +K+ T+ + + E K RV PL VT
Sbjct: 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL---KSIKDSRVHVLPLTVT 61
Query: 92 NQASFENIFVKAKAKFG--GVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVR-- 140
S + K G G+ +L+NNAGV ++ + +D+N V
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 141 ------GQLLAIEHMGQHKGGRGGTVVMISSRTALI-----PGYLWPL--YSTTKKAQLA 187
+ A + G V+ ISS I +P+ Y +K A
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINM 181
Query: 188 YTEAMGDEFYEKHFNIRTMSLCPGLTDT 215
+ + + + N+ ++ CPG T
Sbjct: 182 FGRTLAVDLKDD--NVLVVNFCPGWVQT 207
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 96.7 bits (241), Expect = 2e-23
Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 34/210 (16%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVA--FGGTSVALGEQQEKEYSKEYGSDRVLFCPLD 89
++TG +GLG V+ L F ++ ++ +K + + +D
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHS--NIHILEID 80
Query: 90 VTNQASFENIF--VKAKAKFGGVDVLVNNAGVGYE-------DKDNWEKTIDINFKGSVR 140
+ N +++ + ++ K G++VL NNAG+ + T+ N
Sbjct: 81 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTN----TV 136
Query: 141 GQLLAIEHM------------GQHKGGRGGTVVMISSRTALI---PGYLWPLYSTTKKAQ 185
++ + Q G ++ +SS I Y T+K A
Sbjct: 137 VPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSAL 196
Query: 186 LAYTEAMGDEFYEKHFNIRTMSLCPGLTDT 215
A T+++ + Y + I +SL PG T
Sbjct: 197 NAATKSLSVDLYPQ--RIMCVSLHPGWVKT 224
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 96.0 bits (240), Expect = 2e-23
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
V +VTG ++G+GK+ K KV A ++ + + YG + + DV+
Sbjct: 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVS 61
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSVRGQ 142
+A E + A +G +DV+VNNAG+ +D W++ ID+N G
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGI---TRDTLLIRMKKSQWDEVIDLNLTGVFLCT 118
Query: 143 LLAIEHMGQHKGGRGGTVVMISS 165
A + M + + GR ++ I+S
Sbjct: 119 QAATKIMMKKRKGR---IINIAS 138
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 96.5 bits (241), Expect = 2e-23
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 14 TWDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKE 73
T + T+ ++ G A+VTG T G+G++ F + A V GT E + KE
Sbjct: 11 TLEAQTQGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR----EDKLKE 66
Query: 74 YSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN------- 126
+ + G V +++++ S + + A+ + G+D+LVNNAG+ +D
Sbjct: 67 IAADLG-KDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGI---TRDGLFVRMQD 122
Query: 127 --WEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISS 165
W+ + +N + I M + + GR ++ I+S
Sbjct: 123 QDWDDVLAVNLTAASTLTRELIHSMMRRRYGR---IINITS 160
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 95.6 bits (239), Expect = 2e-23
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCPLDV 90
A++TG ++G+G++ ++ +A G + E+ +E + GS V ++
Sbjct: 3 KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEA-RRRGSPLVAVLGANL 61
Query: 91 TNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSVRG 141
+ + +A GG+D LVNNAG+ +D WE ++ N R
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGI---TRDTLLVRMKDEDWEAVLEANLSAVFRT 118
Query: 142 QLLAIEHMGQHKGGRGGTVVMISS 165
A++ M + + GR +V I+S
Sbjct: 119 TREAVKLMMKARFGR---IVNITS 139
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 96.1 bits (240), Expect = 3e-23
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+A+VTG ++G+G++ AKVA S A + G
Sbjct: 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG-GEAFAVKA 85
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV+ ++ E +F ++G +DVLVNNAG+ +D W+ +D+N G
Sbjct: 86 DVSQESEVEALFAAVIERWGRLDVLVNNAGI---TRDTLLLRMKRDDWQSVLDLNLGGVF 142
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
A + M + + GR ++ I+S
Sbjct: 143 LCSRAAAKIMLKQRSGR---IINIAS 165
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 96.1 bits (240), Expect = 4e-23
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 17/196 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G A+VTG G+G++ + + A V G + + E ++ + G
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADE--IADGGG-SAEAVVA 86
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVRG 141
D+ + N+ + A VDVLVNNAG+ W + + +N +
Sbjct: 87 DLADLEGAANV-AEELAATRRVDVLVNNAGIIARAPAEEVSLGR-WREVLTVNLDAAWVL 144
Query: 142 QLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHF 201
M H GR +V I+S + G Y+ +K A + T A+ E+ +
Sbjct: 145 SRSFGTAMLAHGSGR---IVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGR-- 199
Query: 202 NIRTMSLCPGLTDTPL 217
+ +L PG T
Sbjct: 200 GVGVNALAPGYVVTAN 215
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 95.3 bits (238), Expect = 4e-23
Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 37/212 (17%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
K ++TG G+G++ +E F KE A++ + + +
Sbjct: 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVM 56
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV + AS E F +A A G +D +V+ AG+ +DN WE + +N GS
Sbjct: 57 DVADPASVERGFAEALAHLGRLDGVVHYAGI---TRDNFHWKMPLEDWELVLRVNLTGSF 113
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTAL-IPGYLWPL---YSTTKKAQLAYTEAMGDE 195
A E M + G +V+ +SR L G Y+ + + T + E
Sbjct: 114 LVAKAASEAMREKNPGS---IVLTASRVYLGNLG-----QANYAASMAGVVGLTRTLALE 165
Query: 196 FYEKHFNIRTMSLCPGLTDTP----LPDHQGE 223
+ IR +L PG +T +P+ E
Sbjct: 166 L--GRWGIRVNTLAPGFIETRMTAKVPEKVRE 195
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 95.3 bits (238), Expect = 4e-23
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+G VA+VTG ++G+GK+ E + AKV TS E + S G D L
Sbjct: 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLG-DNGKGMAL 62
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
+VTN S E + +FGGVD+LVNNAG+ +DN W ++ N
Sbjct: 63 NVTNPESIEAVLKAITDEFGGVDILVNNAGI---TRDNLLMRMKEEEWSDIMETNLTSIF 119
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
R + M + + GR ++ + S
Sbjct: 120 RLSKAVLRGMMKKRQGR---IINVGS 142
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 95.7 bits (239), Expect = 6e-23
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+ VA+VTG +G+G+ + K + V + + E K +G
Sbjct: 43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI-KSFG-YESSGYAG 100
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV+ + + K + VD+LVNNAG+ +DN WE + N
Sbjct: 101 DVSKKEEISEVINKILTEHKNVDILVNNAGI---TRDNLFLRMKNDEWEDVLRTNLNSLF 157
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
+ M ++ GR ++ ISS
Sbjct: 158 YITQPISKRMINNRYGR---IINISS 180
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 94.9 bits (237), Expect = 8e-23
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 19/174 (10%)
Query: 1 MTSPNEGQAGVSLTWDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG 60
M + G + + VAIVTG ++G+G++ + A V
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMDKT--LDKQVAIVTGASRGIGRAIALELARRGAMVIGT 58
Query: 61 GTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVG 120
T+ A E + K+ G L+V + + + + +FG ++VLVNNAG+
Sbjct: 59 ATTEAGAEGIGAAF-KQAG-LEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGI- 115
Query: 121 YEDKDN---------WEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISS 165
+D W+ ID N K R + M + +GGR +V I+S
Sbjct: 116 --TQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGR---IVNITS 164
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 93.7 bits (234), Expect = 1e-22
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
KG VA+VTG ++G+G++ K+ A V + + K+ GS +
Sbjct: 3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGS-DAIAVRA 61
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
DV N N+ + FG VD+LVNNAGV KDN W+ I+ N KG
Sbjct: 62 DVANAEDVTNMVKQTVDVFGQVDILVNNAGV---TKDNLLMRMKEEEWDTVINTNLKGVF 118
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
M + + GR +V I+S
Sbjct: 119 LCTKAVSRFMMRQRHGR---IVNIAS 141
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 95.2 bits (237), Expect = 2e-22
Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 21/197 (10%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAK---VAFGGTS---VALGEQQEKEYSKEYGSDRVLF 85
V ++TG + G+G + ++ V T G E + +
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVY--ATLRDLKTQGRLWEAARALACPPGSLET 61
Query: 86 CPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGY----ED--KDNWEKTIDINFKGSV 139
LDV + S + G VDVLV NAG+G E +D +D+N G+V
Sbjct: 62 LQLDVRDSKSVAAAR--ERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTV 119
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEK 199
R + M + GR V++ S L+ +Y +K A E++
Sbjct: 120 RMLQAFLPDMKRRGSGR---VLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLL--L 174
Query: 200 HFNIRTMSLCPGLTDTP 216
F + + G T
Sbjct: 175 PFGVHLSLIECGPVHTA 191
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 92.9 bits (232), Expect = 2e-22
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCP 87
A+VTG ++G+G+S +E VA S E +E K G
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGV-DSFAIQ 60
Query: 88 LDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGS 138
+V + + + + ++FG +DVLVNNAG+ +DN W+ ID N KG
Sbjct: 61 ANVADADEVKAMIKEVVSQFGSLDVLVNNAGI---TRDNLLMRMKEQEWDDVIDTNLKGV 117
Query: 139 VRGQLLAIEHMGQHKGGRGGTVVMISS 165
A M + + G ++ +SS
Sbjct: 118 FNCIQKATPQMLRQRSGA---IINLSS 141
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 91.8 bits (229), Expect = 7e-22
Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 30/199 (15%)
Query: 25 NVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVL 84
+ I+ +V ++G+G++ + +E A+V + L ++ Y
Sbjct: 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV--------- 64
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAG-------VGYEDKDNWEKTIDINFKG 137
D+ K VD+LV NAG ++D +++ ID F
Sbjct: 65 --VCDLRKDLD------LLFEKVKEVDILVLNAGGPKAGFFDELTNED-FKEAIDSLFLN 115
Query: 138 SVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFY 197
++ + M + GR +V I+S + + P ++ + A + + + E
Sbjct: 116 MIKIVRNYLPAMKEKGWGR---IVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEV- 171
Query: 198 EKHFNIRTMSLCPGLTDTP 216
+ I + PG T+T
Sbjct: 172 -APYGITVNCVAPGWTETE 189
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 92.2 bits (230), Expect = 7e-22
Identities = 39/158 (24%), Positives = 58/158 (36%), Gaps = 17/158 (10%)
Query: 17 ESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSK 76
E+ + P + VA VTGG GLG + VA + + +
Sbjct: 13 EAQTQGPGS-MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER 71
Query: 77 EYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------W 127
+ G +DV + S E K A FG VDVL+NNAG+ +D W
Sbjct: 72 DAG-RDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGI---TRDATFMKMTKGDW 127
Query: 128 EKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISS 165
+ + + I M + + GR +V I S
Sbjct: 128 DAVMRTDLDAMFNVTKQFIAGMVERRFGR---IVNIGS 162
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 92.8 bits (231), Expect = 8e-22
Identities = 42/240 (17%), Positives = 65/240 (27%), Gaps = 50/240 (20%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCP 87
VA+VTG K LG+S E E V S A + + +
Sbjct: 8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQ 66
Query: 88 LDVTNQASF-----------------ENIFVKAKAKFGGVDVLVNNAGVGY--------- 121
D++N A+ + +G DVLVNNA Y
Sbjct: 67 ADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDE 126
Query: 122 EDKD-----------NWEKTIDINFKGSVRGQLLAIEHM---GQHKGGRGGTVVMISSRT 167
+ + N + G +++ +
Sbjct: 127 DGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAM 186
Query: 168 ALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTP--LPDHQGE 223
GY +Y+ K A T + E IR + PGL+ +P E
Sbjct: 187 TNQPLLGY--TIYTMAKGALEGLTRSAALELAPL--QIRVNGVGPGLSVLVDDMPPAVWE 242
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 91.4 bits (228), Expect = 1e-21
Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 26/204 (12%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCP 87
KG VA+VTG ++G+G++ + + A VA G E+ E + G
Sbjct: 6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI-QSNGG-SAFSIG 63
Query: 88 LDVTNQASFENIFVKAKAKF------GGVDVLVNNAGVGYE------DKDNWEKTIDINF 135
++ + E ++ + D+L+NNAG+G + +++ + +N
Sbjct: 64 ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNA 123
Query: 136 KGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKAQLAYTEAMG 193
K A+ + ++ ISS I P + YS TK A T +
Sbjct: 124 KAPFFIIQQALSRL-----RDNSRIINISSAATRISLPDF--IAYSMTKGAINTMTFTLA 176
Query: 194 DEFYEKHFNIRTMSLCPGLTDTPL 217
+ + I ++ PG T +
Sbjct: 177 KQLGAR--GITVNAILPGFVKTDM 198
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 91.4 bits (228), Expect = 2e-21
Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 37/225 (16%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAF-------------GGTSVALGEQQEKEYS 75
+G A++TGG +G+G+S + A +A T+ L E
Sbjct: 9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAE--TVALV 66
Query: 76 KEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN--------- 126
++ G R + +DV ++A+ E+ +A+ GG+D+ + NAG+
Sbjct: 67 EKTGR-RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS---TIALLPEVESAQ 122
Query: 127 WEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPLYSTTKKA 184
W++ I N G+ M + GR +V +SS Y ++K
Sbjct: 123 WDEVIGTNLTGTFNTIAAVAPGMIKRNYGR---IVTVSSMLGHSANFAQA--SYVSSKWG 177
Query: 185 QLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPE 229
+ T+ + I ++ PG +TP+ + +
Sbjct: 178 VIGLTKCAAHDLVGY--GITVNAVAPGNIETPMTHNDFVFGTMRP 220
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 91.1 bits (227), Expect = 2e-21
Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 36/219 (16%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKE-----YSKEYGSDRV 83
+ +A+VTG G+G++ E A VA A ++ + +
Sbjct: 6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65
Query: 84 LFCPLDVTNQASFENIFVKAKAKFGG-VDVLVNNAGVGYEDKDN---------WEKTIDI 133
DV+ + + + +A F V+V+ AG+ +D W+K I +
Sbjct: 66 AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI---TQDEFLLHMSEDDWDKVIAV 122
Query: 134 NFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPL---YSTTKKAQLAY 188
N KG+ A + + G G+++ ISS + G Y+ +K +
Sbjct: 123 NLKGTFLVTQAAAQALV--SNGCRGSIINISSIVGKVGNVG-----QTNYAASKAGVIGL 175
Query: 189 TEAMGDEFYEKHFNIRTMSLCPGLTDTP----LPDHQGE 223
T+ E IR S+ PG TP +P +
Sbjct: 176 TQTAARELGRH--GIRCNSVLPGFIATPMTQKVPQKVVD 212
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 90.6 bits (226), Expect = 2e-21
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G +++TG + G+G + K +KV G++ E++ K D
Sbjct: 13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN----EEKLKSLGNALK-DNYTIEVC 67
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
++ N+ N+ +K +D+LV NAG+ D ++K IDIN K +
Sbjct: 68 NLANKEECSNLI----SKTSNLDILVCNAGI---TSDTLAIRMKDQDFDKVIDINLKANF 120
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
AI+ M Q + GR ++ ISS
Sbjct: 121 ILNREAIKKMIQKRYGR---IINISS 143
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 90.7 bits (226), Expect = 2e-21
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 22 RPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSD 81
+++ + +A VTGG G+G S + K+ +V G + + E K G
Sbjct: 5 HHHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALG-F 63
Query: 82 RVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTID 132
+V + S + F K KA+ G +DVLVNNAG+ +D W+ ID
Sbjct: 64 DFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI---TRDVVFRKMTREDWQAVID 120
Query: 133 INFKGSVRGQLLAIEHMGQHKGGRGGTVVMISS 165
N I+ M + GR ++ ISS
Sbjct: 121 TNLTSLFNVTKQVIDGMVERGWGR---IINISS 150
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 91.5 bits (227), Expect = 3e-21
Identities = 56/283 (19%), Positives = 87/283 (30%), Gaps = 88/283 (31%)
Query: 20 EERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYG 79
E N K A+VTGG KG+G + V V G + ++
Sbjct: 2 PETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-N 60
Query: 80 SDRVLFCPLDVTNQASFENIFVKA-KAKFGGVDVLVNNAGVGY----------------- 121
+ V+F LDVT+ + + K FG +D+LVNNAGV
Sbjct: 61 HENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 122 -------------------EDKDNWEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVM 162
E + E+ + IN+ G + I + R +V
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPR---IVN 177
Query: 163 ISSR---------------------------TALIPGYL------------WPL----YS 179
+SS ++ L WP Y+
Sbjct: 178 VSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYT 237
Query: 180 TTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQG 222
T+K AYT + ++ + +CPGL T + G
Sbjct: 238 TSKACLNAYTRVLANKIP----KFQVNCVCPGLVKTEMNYGIG 276
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 91.3 bits (227), Expect = 3e-21
Identities = 42/240 (17%), Positives = 65/240 (27%), Gaps = 50/240 (20%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKEYSKEYGSDRVLFCP 87
VA+VTG K LG+S E E V S A + + +
Sbjct: 45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQ 103
Query: 88 LDVTNQASF-----------------ENIFVKAKAKFGGVDVLVNNAGVGY--------- 121
D++N A+ + +G DVLVNNA Y
Sbjct: 104 ADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDE 163
Query: 122 EDKD-----------NWEKTIDINFKGSVRGQLLAIEHM---GQHKGGRGGTVVMISSRT 167
+ + N + G +++ +
Sbjct: 164 DGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAM 223
Query: 168 ALI--PGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTP--LPDHQGE 223
GY +Y+ K A T + E IR + PGL+ +P E
Sbjct: 224 TNQPLLGY--TIYTMAKGALEGLTRSAALELAPL--QIRVNGVGPGLSVLVDDMPPAVWE 279
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 89.9 bits (224), Expect = 3e-21
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 28/157 (17%)
Query: 18 STEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKE 77
+T +VTGG +G+G + + + KVA +
Sbjct: 3 ATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-------- 54
Query: 78 YGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WE 128
+ +DVT+ + + F + G V+VLV+NAG+ D +E
Sbjct: 55 -----LFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL---SADAFLMRMTEEKFE 106
Query: 129 KTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISS 165
K I+ N G+ R A M ++K GR ++ I S
Sbjct: 107 KVINANLTGAFRVAQRASRSMQRNKFGR---MIFIGS 140
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 89.5 bits (223), Expect = 5e-21
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 26/195 (13%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
A+VTGG++G+G++ E + +VA + Q + P D+
Sbjct: 4 KALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL----------GAVPLPTDLE 53
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVG-------YEDKDNWEKTIDINFKGSVRGQLL 144
+ + + +A GG+ VLV+ A V ++ W + + ++ +
Sbjct: 54 -KDDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEE-WRRVLYLHLDVAFLLAQA 111
Query: 145 AIEHMGQHKGGRGGTVVMISSRTALIPGYLW--PLYSTTKKAQLAYTEAMGDEFYEKHFN 202
A HM + GR V+ I S T G P Y+T K A L T A+ E+
Sbjct: 112 AAPHMAEAGWGR---VLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARL--G 166
Query: 203 IRTMSLCPGLTDTPL 217
IR LCPG +T
Sbjct: 167 IRVNLLCPGYVETEF 181
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 89.5 bits (223), Expect = 5e-21
Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 28/146 (19%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
+VTGG +G+G + F KVA S + L
Sbjct: 20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE-------------PPEGFLAVKC 66
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDN---------WEKTIDINFKGSV 139
D+T+ E + + + G V+VL+ NAGV KD + ++ N G+
Sbjct: 67 DITDTEQVEQAYKEIEETHGPVEVLIANAGV---TKDQLLMRMSEEDFTSVVETNLTGTF 123
Query: 140 RGQLLAIEHMGQHKGGRGGTVVMISS 165
R A M + K GR VV+ISS
Sbjct: 124 RVVKRANRAMLRAKKGR---VVLISS 146
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 89.6 bits (223), Expect = 5e-21
Identities = 33/203 (16%), Positives = 57/203 (28%), Gaps = 16/203 (7%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVA-LGEQQEKEYSKEYGSDRVLFCPLDV 90
V +TG G+G + E + V A + +E VL V
Sbjct: 3 VIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGV 62
Query: 91 TNQASFENIFVKAKAKFGGVDVLVNNAGVGYE--------DKDNWEKTIDINFKGSVRGQ 142
+ V A G+ V VN GV + + + + +
Sbjct: 63 LDGL-VCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPG 121
Query: 143 LLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFN 202
+ + + G A G Y+ +K A ++ +
Sbjct: 122 AAELPMV---EAMLAGDEARAIE-LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGR--G 175
Query: 203 IRTMSLCPGLTDTPLPDHQGEHP 225
+R + PG +TPL P
Sbjct: 176 VRLNVVAPGAVETPLLQASKADP 198
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 88.1 bits (219), Expect = 2e-20
Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 48/220 (21%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
+ +++G G+G + + ++ A D++
Sbjct: 3 IIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI-------------------ADLS 43
Query: 92 NQASFENIFVKAKAK-FGGVDVLVNNAGVGYEDKDNWEKTIDINFKGSVRGQLLAIEHMG 150
+ AK G+D LV AG+G + +N+ G+ + +
Sbjct: 44 TAEGRKQAIADVLAKCSKGMDGLVLCAGLG-PQTKVLGNVVSVNYFGATELMDAFLPALK 102
Query: 151 QHKGGR-------------------------GGTVVMISSRTALIPGYLWPLYSTTKKAQ 185
+ G + Y+ +K A
Sbjct: 103 KGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNAL 162
Query: 186 LAYTEAMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEHP 225
+ E +R ++ PG T+TPL + P
Sbjct: 163 TVAVRKRAAAWGEA--GVRLNTIAPGATETPLLQAGLQDP 200
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 88.1 bits (219), Expect = 2e-19
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 37/214 (17%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
G VA+VTG +G+G + E F ++ A V A + K + + G + L
Sbjct: 212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA--AEDLKRVADKVGGTAL---TL 266
Query: 89 DVTNQASFENIFVKAKAKFGG-VDVLVNNAGVGYEDKDN---------WEKTIDINFKGS 138
DVT + + I GG VD+LVNNAG+ +D W+ I +N
Sbjct: 267 DVTADDAVDKITAHVTEHHGGKVDILVNNAGI---TRDKLLANMDEKRWDAVIAVNLLAP 323
Query: 139 VRGQLLAIEHMGQHKGGRGGTVVMISSRTALI--PGYLWPL---YSTTKKAQLAYTEAMG 193
R + + +GGR V+ +SS + G Y+TTK + EA+
Sbjct: 324 QRLTEGLVGNGTIGEGGR---VIGLSSMAGIAGNRG-----QTNYATTKAGMIGLAEALA 375
Query: 194 DEFYEKHFNIRTMSLCPGLTDTP----LPDHQGE 223
+K I ++ PG +T +P E
Sbjct: 376 PVLADK--GITINAVAPGFIETKMTEAIPLATRE 407
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 83.7 bits (207), Expect = 7e-18
Identities = 53/222 (23%), Positives = 83/222 (37%), Gaps = 32/222 (14%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKV-------AFGGTSVALGEQQE--KEYSKEYG 79
G VA+VTG GLG+ + F + AKV G + E K G
Sbjct: 18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG 77
Query: 80 SDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEKTID 132
+ V + + A FG VD+LVNNAG+ D+ +W D
Sbjct: 78 --EAVADYNSVID---GAKVIETAIKAFGRVDILVNNAGI-LRDRSLVKTSEQDWNLVND 131
Query: 133 INFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAM 192
++ KGS + A +M + GR ++M SS + + + Y+ K + +
Sbjct: 132 VHLKGSFKCTQAAFPYMKKQNYGR---IIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTV 188
Query: 193 GDEFYEKHFNIRTMSLCPG----LTDTPLPDHQGEHPFIPEL 230
E N+ + P +T+ LPD P+L
Sbjct: 189 AIEG--ARNNVLCNVIVPTAASRMTEGILPDILFN-ELKPKL 227
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 81.7 bits (202), Expect = 3e-17
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 28/220 (12%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVA---FGGTSVALGEQQEK-----EYSKEYGS 80
K V I+TG GLGK + F K AKV GG G + + + G
Sbjct: 7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGG 66
Query: 81 DRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE------DKDNWEKTIDIN 134
V D N + I A FG V V++NNAG+ + + +++ ID++
Sbjct: 67 VAVA----DYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVH 122
Query: 135 FKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGD 194
G+ A + + K GR +V SS L + Y++ K A L + E +
Sbjct: 123 LNGAFAVTKAAWPYFQKQKYGR---IVNTSSPAGLYGNFGQANYASAKSALLGFAETLAK 179
Query: 195 EFYEKHFNIRTMSLCPG----LTDTPLPDHQGEHPFIPEL 230
E +NI+ ++ P +T++ +P E PE
Sbjct: 180 EG--AKYNIKANAIAPLARSRMTESIMPPPMLE-KLGPEK 216
Score = 78.2 bits (193), Expect = 4e-16
Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 56/257 (21%)
Query: 1 MTSPNEGQAGVSLTWDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKV--- 57
M + + + V +K V ++TG GLGK + + F K AKV
Sbjct: 293 MLNDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVN 352
Query: 58 -------------AFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
A GG + DV + E I
Sbjct: 353 DFKDATKTVDEIKAAGGEAWPDQH--------------------DVAKDS--EAIIKNVI 390
Query: 105 AKFGGVDVLVNNAGVGYEDK-------DNWEKTIDINFKGSVRGQLLAIEHMGQHKGGRG 157
K+G +D+LVNNAG+ D+ W+ ++ G+ LA + + + GR
Sbjct: 391 DKYGTIDILVNNAGI-LRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGR- 448
Query: 158 GTVVMISSRTALIPGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPG----LT 213
++ I+S + + + YS++K L ++ M E NI+ + P +T
Sbjct: 449 --IINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEG--AKNNIKVNIVAPHAETAMT 504
Query: 214 DTPLPDHQGEHPFIPEL 230
+ + + + +
Sbjct: 505 LSIMREQDKN-LYHADQ 520
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 80.1 bits (198), Expect = 3e-17
Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 38/225 (16%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVA---FGGTSVALGEQQE------KEYSKEYG 79
G V +VTG GLG+++ F + A V GG +G+ +E + G
Sbjct: 8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG 67
Query: 80 SDRVLFCPLDVTNQASFE---NIFVKAKAKFGGVDVLVNNAGVGYEDK-------DNWEK 129
V N S E + A FG +DV+VNNAG+ D+ ++W+
Sbjct: 68 KA--------VANYDSVEAGEKLVKTALDTFGRIDVVVNNAGI-LRDRSFSRISDEDWDI 118
Query: 130 TIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISSRTALIPGYLWPLYSTTKKAQLAYT 189
++ +GS + A +HM + GR ++M +S + + + YS K L
Sbjct: 119 IQRVHLRGSFQVTRAAWDHMKKQNYGR---IIMTASASGIYGNFGQANYSAAKLGLLGLA 175
Query: 190 EAMGDEFYEKHFNIRTMSLCPG----LTDTPLPDHQGEHPFIPEL 230
+ E + NI ++ P +T+T +P+ E PE
Sbjct: 176 NTLVIEG--RKNNIHCNTIAPNAGSRMTETVMPEDLVE-ALKPEY 217
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 79.7 bits (197), Expect = 5e-17
Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 31/247 (12%)
Query: 12 SLTWDESTEERPYNVQI-KGLVAIVTGGTKGLGKSFVEHFLKEHAKV----------AFG 60
+ E+ + P ++ + G V IVTG G+G++ F E A+V
Sbjct: 8 HMGTLEAQTQGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSP 67
Query: 61 GTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVG 120
+ + + E + G + +V + + A FGG+DVLVNNAG+
Sbjct: 68 ASGGSAAQSVVDEITAAGG--EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGI- 124
Query: 121 YEDK-------DNWEKTIDINFKGSVRGQLLAIEHM---GQHKGGRGGTVVMISSRTALI 170
D+ + ++ I ++ KG A + + G ++ SS L
Sbjct: 125 VRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ 184
Query: 171 PGYLWPLYSTTKKAQLAYTEAMGDEFYEKHFNIRTMSLCPG----LTDTPLPDHQGEH-P 225
YS K T E + + ++ P +T+T +
Sbjct: 185 GSVGQGNYSAAKAGIATLTLVGAAEM--GRYGVTVNAIAPSARTRMTETVFAEMMATQDQ 242
Query: 226 FIPELKP 232
+ P
Sbjct: 243 DFDAMAP 249
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 69.5 bits (170), Expect = 9e-14
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 13/139 (9%)
Query: 21 ERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGS 80
+ +KG A+V GT +G E A+V G + + +K +
Sbjct: 110 VKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKV 169
Query: 81 DRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE--DKDNWEKTIDINFKGS 138
+ + + AS G + +G E + W+ I
Sbjct: 170 NVT---AAETADDASRAEA-------VKGAHFVFTAGAIGLELLPQAAWQNESSIEIVAD 219
Query: 139 VRG-QLLAIEHMGQHKGGR 156
L I + G+
Sbjct: 220 YNAQPPLGIGGIDATDKGK 238
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 67.3 bits (165), Expect = 7e-13
Identities = 49/223 (21%), Positives = 73/223 (32%), Gaps = 35/223 (15%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
++TG GLG + A V GE + + +V L
Sbjct: 15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEA-----AARTMAGQVEVREL 69
Query: 89 DVTNQASFENIFVKAKAK-FGGVDVLVNNAGVGY----EDKDNWEKTIDINFKGSVRGQL 143
D+ + +S V+ A G DVL+NNAG+ D +E I N G
Sbjct: 70 DLQDLSS-----VRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTN 124
Query: 144 LAIEHMGQHKGGRGGTVVMISS---RTALIP---------GY-LWPLYSTTKKAQLAYTE 190
L + + R VV +SS I Y W YS +K A L +T
Sbjct: 125 LLLPRL----TDR---VVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTS 177
Query: 191 AMGDEFYEKHFNIRTMSLCPGLTDTPLPDHQGEHPFIPELKPI 233
+ +R ++ PG + T L G +
Sbjct: 178 ELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAA 220
>1ktb_A Alpha-N-acetylgalactosaminidase; glycoprotein, (beta/alpha)8
barrel, hydrolase; HET: NAG; 1.90A {Gallus gallus} SCOP:
b.71.1.1 c.1.8.1 PDB: 1ktc_A* 3h55_A* 3h54_A* 3h53_A*
3igu_A*
Length = 405
Score = 64.1 bits (155), Expect = 2e-11
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 268 LDNGLALTPPMGWMAWQRYRCNTDCDNYPDECIRPEKVSQALLQIIRNG 316
L+NGLA TPPMGW+AW+R+RCN +C P +CI + +I +G
Sbjct: 1 LENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDG 49
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein,
glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease
mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo
sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A*
3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A*
3hg5_A* 3gxp_A* 3s5y_A*
Length = 404
Score = 62.9 bits (152), Expect = 3e-11
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 268 LDNGLALTPPMGWMAWQRYRCNTDCDNYPDECI 300
LDNGLA TP MGW+ W+R+ CN DC PD CI
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCI 33
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida
hydrolase; HET: NAG BTB; 1.95A {Saccharomyces
cerevisiae} PDB: 3lrl_A* 3lrm_A*
Length = 479
Score = 57.6 bits (138), Expect = 2e-09
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 250 IAFLLLLSLAYWTQQGQALDNGLALTPPMGWMAWQRYRCNTD 291
FL NGL LTP MGW W + C+
Sbjct: 4 FYFLTACISLKGVFGVSPSYNGLGLTPQMGWDNWNTFACDVS 45
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase;
structural genomic center for structural genomics, JCSG;
HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Length = 433
Score = 52.5 bits (125), Expect = 7e-08
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 265 GQALDNGLALTPPMGWMAWQRYRCNTDCDNY 295
G ++ ALTPPMGW +W Y + +
Sbjct: 1 GMEVNRLSALTPPMGWNSWDCYGASVTEEEV 31
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY
motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG
EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A*
3a23_A*
Length = 614
Score = 51.3 bits (122), Expect = 2e-07
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 265 GQALDNGLALTPPMGWMAWQRYRCNTDCD 293
+ PMGW +W + D
Sbjct: 1 AVTTRQITVPSAPMGWASWNSFAAKIDYS 29
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY
motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP:
b.71.1.1 c.1.8.1
Length = 362
Score = 50.5 bits (120), Expect = 3e-07
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 268 LDNGLALTPPMGWMAWQRYRCNTD 291
+NGL TP MGW +W + C +
Sbjct: 1 FENGLGRTPQMGWNSWNHFYCGIN 24
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase;
HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Length = 397
Score = 49.8 bits (118), Expect = 5e-07
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 269 DNGLALTPPMGWMAWQRYRCNTD 291
+NGLA+TP MGW W +Y CN D
Sbjct: 2 NNGLAITPQMGWNTWNKYGCNVD 24
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains,
glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A
{Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Length = 417
Score = 49.8 bits (118), Expect = 6e-07
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 267 ALDNGLALTPPMGWMAWQRYRCNTD 291
D P +GW +W Y C+ D
Sbjct: 3 MPDGVTGKVPSLGWNSWNAYHCDID 27
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 47.6 bits (114), Expect = 2e-06
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ + AK+ F E+ K + ++ +DV + N F +
Sbjct: 52 KVLDQLGAKLVFTY----RKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 107
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
G +D + + + + + +
Sbjct: 108 KDVGNIDGVYH--SIAFANME 126
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 44.5 bits (106), Expect = 2e-05
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ A++ F T GE+ EK E + + + P DVTN A E F K
Sbjct: 27 RSLHEAGARLIF--TY--AGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
+ G + + + + + +K+
Sbjct: 83 EQVGVIHGIAH--CIAFANKE 101
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ A+VA E+ + ++ G + DVT + +F K
Sbjct: 28 AKLKEAGAEVALSY----QAERLRPEAEKLAEALGGALLF--RADVTQDEELDALFAGVK 81
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
FGG+D LV+ + + ++
Sbjct: 82 EAFGGLDYLVH--AIAFAPRE 100
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 43.8 bits (104), Expect = 4e-05
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ F +E A++AF T + EK E +K +GSD V+ DV+ +N+ +
Sbjct: 41 KSFHREGAQLAF--TY--ATPKLEKRVREIAKGFGSDLVV--KCDVSLDEDIKNLKKFLE 94
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
+G +D++V+ + Y K+
Sbjct: 95 ENWGSLDIIVH--SIAYAPKE 113
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 43.3 bits (103), Expect = 5e-05
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ + A +AF T L E EK ++E S V LDV+ + F++++ K
Sbjct: 26 QSCFNQGATLAF--TY--LNESLEKRVRPIAQELNSPYVY--ELDVSKEEHFKSLYNSVK 79
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
G +D +V+ V + K+
Sbjct: 80 KDLGSLDFIVH--SVAFAPKE 98
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 43.0 bits (102), Expect = 6e-05
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQE--KEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKA 105
+ +E A++AF +G+ ++ ++ E+ VL P DV + +++FV+
Sbjct: 46 KAMHREGAELAFTY----VGQFKDRVEKLCAEFNPAAVL--PCDVISDQEIKDLFVELGK 99
Query: 106 KFGGVDVLVNNAGVGYEDKD 125
+ G+D +V+ + + +D
Sbjct: 100 VWDGLDAIVH--SIAFAPRD 117
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 42.6 bits (101), Expect = 9e-05
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ +E A++AF T +G++ + E++ E+GS+ V P DV + A + +F K
Sbjct: 34 KACKREGAELAF--TY--VGDRFKDRITEFAAEFGSELVF--PCDVADDAQIDALFASLK 87
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
+ +D LV+ +G+ ++
Sbjct: 88 THWDSLDGLVH--SIGFAPRE 106
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 42.3 bits (100), Expect = 1e-04
Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 43/178 (24%)
Query: 35 VTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQA 94
VTG LG+ E + L + D+ +
Sbjct: 8 VTGAAGQLGRVMRERLAPMAEIL----RLADL-------SPLDPAGPNEECVQCDLADAN 56
Query: 95 SFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKGSVRGQLLAIEHMGQHKG 154
+ + G D +V+ G+ E +E+ + N G L E H
Sbjct: 57 AVNAM-------VAGCDGIVHLGGISVE--KPFEQILQGNIIGLYN--LY--EAARAHGQ 103
Query: 155 GRGGTVVMISSRTA--LIPGYL-----WPL-----YSTTKKAQLAYTEAMGDEFYEKH 200
R +V SS P P Y +K + E + +++K
Sbjct: 104 PR---IVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSK----CFGENLARMYFDKF 154
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ + A++AF G+ +K ++E G+ DV + AS + +F +
Sbjct: 51 KAAREAGAELAF----TYQGDALKKRVEPLAEELGAFVAG--HCDVADAASIDAVFETLE 104
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
K+G +D LV+ +G+ DKD
Sbjct: 105 KKWGKLDFLVH--AIGFSDKD 123
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 42.2 bits (100), Expect = 1e-04
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ + A+VA L E +K ++ G + P DV++ S +N+F
Sbjct: 50 KAVCAQGAEVAL----TYLSETFKKRVDPLAESLGVKLTV--PCDVSDAESVDNMFKVLA 103
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
++G +D +V+ V + DK+
Sbjct: 104 EEWGSLDFVVH--AVAFSDKN 122
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 42.2 bits (100), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEK---EYSKEYGSDRVLFCPLDVTNQASFENIFVKAK 104
+ +E A++AF ++ + E++ + GSD VL DV AS + +F +
Sbjct: 29 QAMHREGAELAFT----YQNDKLKGRVEEFAAQLGSDIVL--QCDVAEDASIDTMFAELG 82
Query: 105 AKFGGVDVLVNNAGVGYEDKD 125
+ D V+ +G+ D
Sbjct: 83 KVWPKFDGFVH--SIGFAPGD 101
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 37.4 bits (86), Expect = 0.005
Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVT 91
VA++ G T +G S E L + + + + + + D++
Sbjct: 3 VALIVGVTGIIGNSLAEI-LPLADTPGGPWKVYGVARRTRPAWH---EDNPINYVQCDIS 58
Query: 92 NQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKGSVRGQLLAIEHMGQ 151
+ + AK + + + V + ++ ++ + N K L A+
Sbjct: 59 DPDDSQ-------AKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNV-LDAVIPNCP 110
Query: 152 H 152
+
Sbjct: 111 N 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.014
Identities = 50/368 (13%), Positives = 92/368 (25%), Gaps = 127/368 (34%)
Query: 14 TWDESTEERPYNVQIKGLVA--------------IVTGGTKGLGKSF----VEHFLKEHA 55
++++ YNV ++ G G GK++ V K
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 56 KVAFG---------GTSVALGEQQEKEYSK-----EYGSDRVLFCPLDVTNQASFENIFV 101
K+ F + + E +K + SD L + + + +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 102 KAKAKFGGVDVLVNNAGVGYEDKDN-WEKTIDIN-FKGSVRGQLLAIEHMGQHKGGRGGT 159
K+K + VL N N F S +
Sbjct: 239 KSKPYENCLLVL-----------LNVQNAKA-WNAFNLSCK------------------- 267
Query: 160 VVMISSRTALIPGYLWPLYST---TKKAQLAYTEAMGDEFYEKHFNIRTMSLCPGLTDTP 216
+++++R + +L +T + T K+ + R L P
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-------P 319
Query: 217 LPDHQGEHPF----IPELKPIIGNRSMFTY-----CTKMVSTIAFLLLLSLAYWTQQGQA 267
+P I E I + + C K+ + I SL
Sbjct: 320 REVLTT-NPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIE----SSLN-------- 364
Query: 268 LDNGLALTPPMGWMAWQRYRCNTDCDNYPDECIRPE--KVSQALLQIIRNGTTGTTWLVE 325
L P YR + + P + LL +I W
Sbjct: 365 -----VLEPA-------EYR-----KMFDRLSVFPPSAHIPTILLSLI--------WFDV 399
Query: 326 NNEPPRLI 333
++
Sbjct: 400 IKSDVMVV 407
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 35.9 bits (82), Expect = 0.019
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 12/126 (9%)
Query: 17 ESTEERPYNVQI----KGLVAIVTGGTKGLGKSFV------EHFLKEHAKVAFGGTSVAL 66
+ + R Y I K ++ T GLGK+ + K KV + L
Sbjct: 6 DLIQPRIYQEVIYAKCKETNCLIVLPT-GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPL 64
Query: 67 GEQQEKEYSKEYGSDRVLFCPL-DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKD 125
Q + + + + L + + +AK + N+ G +
Sbjct: 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLE 124
Query: 126 NWEKTI 131
+ +
Sbjct: 125 DVSLIV 130
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 34.5 bits (80), Expect = 0.034
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 48 EHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKF 107
++ A++ T + + + + L LDV N+ ++ +
Sbjct: 27 RVAQEQGAQLVL--TGFD-RLRLIQRITDRLPAKAPLL-ELDVQNEEHLASLAGRVTEAI 82
Query: 108 G---GVDVLVNNAGVGYEDKD 125
G +D +V+ +G+ +
Sbjct: 83 GAGNKLDGVVH--SIGFMPQT 101
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 34.2 bits (79), Expect = 0.038
Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 44/205 (21%)
Query: 35 VTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQA 94
VTG G+G + H +V D+ +
Sbjct: 7 VTGAAGGVGSAIRPHLGTLAHEV------RLSD-----IVDLGAAEAHEEIVACDLADAQ 55
Query: 95 SFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKGSVRGQLLAIEHMGQHKG 154
+ ++ D +++ GV E W + N G+ L E
Sbjct: 56 AVHDL-------VKDCDGIIHLGGVSVE--RPWNDILQANIIGAYN--LY--EAARNLGK 102
Query: 155 GRGGTVVMISSRTA--LIPGYLWP----------LYSTTKKAQLAYTEAMGDEFYEKHFN 202
R +V SS P LY +K + E + +Y K +
Sbjct: 103 PR---IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSK----CFGEDLASLYYHKF-D 154
Query: 203 IRTMSLCPGLTDTPLPDHQGEHPFI 227
I T+++ G D + ++
Sbjct: 155 IETLNIRIGSCFPKPKDARMMATWL 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.072
Identities = 45/234 (19%), Positives = 68/234 (29%), Gaps = 92/234 (39%)
Query: 177 LYSTTKKAQLAYTEAMGDEFYEK-------------------HFN------IR--TMSLC 209
LY T+K AQ + A D ++ HF IR ++
Sbjct: 1635 LYKTSKAAQDVWNRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 210 PGLTDTPLPDHQGEHPFIPELKPIIGNRSMFTYC-----TKMVSTIAF----LLLLSLAY 260
+T + E+ N +Y + +T F L L+ A
Sbjct: 1693 ---FETIVDGKLKTEKIFKEI-----NEHSTSYTFRSEKGLLSAT-QFTQPALTLMEKAA 1743
Query: 261 WTQQGQAL-DNGL----------------ALTPPMGWMAWQ------RYRCNTDCDNYP- 296
+ + L GL AL M+ + YR T P
Sbjct: 1744 F----EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 297 DEC---------IRPEKVS-----QALLQIIRNGTTGTTWLVE--N-NEPPRLI 333
DE I P +V+ +AL ++ T WLVE N N +
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Score = 27.7 bits (61), Expect = 7.4
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 15 WDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFG-GTSVALGEQQEKE 73
W+ +T+ + ++ G GG GLG + H K+ G G V + +
Sbjct: 490 WETTTQFKATHILDFG-----PGGASGLGV--LTHRNKD------GTGVRVIVAGTLDIN 536
Query: 74 YSKEYGS 80
+YG
Sbjct: 537 PDDDYGF 543
Score = 27.3 bits (60), Expect = 9.3
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 25/75 (33%)
Query: 264 QG-QALDNGLAL--TPPMGWMAWQRYRCNTDCDNYPDECIRPEKVSQALLQIIRNGTTGT 320
QG Q G+ L T W R DN+ + ++L I+ N
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNR------ADNH-----FKDTYGFSILDIVIN----- 1667
Query: 321 TWLVENNEPPRLIHF 335
N IHF
Sbjct: 1668 ------NPVNLTIHF 1676
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 33.0 bits (76), Expect = 0.13
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 15/103 (14%)
Query: 35 VTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQA 94
V G T LG + V + + + ++ + A
Sbjct: 18 VLGATGLLGHHAARAIRAAGHDL------VLIHRPSSQ--IQRLAYLEPECRVAEMLDHA 69
Query: 95 SFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKG 137
E G+D ++ +AG W++ +
Sbjct: 70 GLERALR-------GLDGVIFSAGYYPSRPRRWQEEVASALGQ 105
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.13
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 29 KGLVAIVTGGTKG-LGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEY------GSD 81
K ++TG KG +G ++ L+ AKV T+ +Q Y Y GS
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVV--TTSRFSKQVTDYYQSIYAKYGAKGST 532
Query: 82 RVLFCPLDVTNQASFENI 99
++ P NQ S +++
Sbjct: 533 LIVV-PF---NQGSKQDV 546
Score = 27.9 bits (62), Expect = 5.7
Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 36/179 (20%)
Query: 2 TSPNEGQAGVSLTWDESTEERPYNVQIKGLVAIVTGGTKGLGKSFVE--HFLKEHAKVAF 59
+P +G + S + N+ +K + + LK
Sbjct: 1220 PAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLE----- 1274
Query: 60 GGTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQASFENIFVKAKAKFGG---------- 109
+ +Q E+ +R E+ A+ ++G
Sbjct: 1275 -AEEIPSEDQ------NEFLLERTREI------HNEAESQLRAAQQQWGNDFYKRDPRIA 1321
Query: 110 -VDVLVNNAGVGYEDKD--NWEKTIDINFKGSVRGQLLAIEHMGQHKGGRGGTVVMISS 165
+ + G+ +D ++ T + K + + + I M +H G G V+
Sbjct: 1322 PLRGALATYGLTIDDLGVASFHGT---STKANDKNESATINEMMKHLGRSEGNPVIGVF 1377
Score = 27.5 bits (61), Expect = 7.5
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 21/62 (33%)
Query: 154 GGRGGTVVMISSRTALIPGYLWPLYS-------------TTKKAQLAYTEAM--GDEFYE 198
G +GG +++ P YL+ + K A + M F
Sbjct: 1448 GQKGGQAIVVH------PDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVS 1501
Query: 199 KH 200
K
Sbjct: 1502 KE 1503
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 31.4 bits (70), Expect = 0.46
Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 18/125 (14%)
Query: 17 ESTEERPYNVQI-----KGLVAIVTGGTKGLGKSFV----------EHFLKEHAKVAFGG 61
E+ + R Y +++ G A++ T G GK+FV AKV F
Sbjct: 4 ETKKARSYQIELAQPAINGKNALICAPT-GSGKTFVSILICEHHFQNMPAGRKAKVVFLA 62
Query: 62 TSVALGEQQEKEYSKEYGSDRVLFCPL--DVTNQASFENIFVKAKAKFGGVDVLVNNAGV 119
T V + EQQ+ + + + + + S E + + +LVN+
Sbjct: 63 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 122
Query: 120 GYEDK 124
G
Sbjct: 123 GTLTS 127
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 31.2 bits (71), Expect = 0.49
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 34 IVTGGTKGLGKSFVEHFLKEH-AK-VAFGGTSVALGEQQEK--EYSKEYGSDRVLFCPLD 89
+VTGGT LG H + E + + + YG+ V D
Sbjct: 534 LVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGA-EVSLQACD 592
Query: 90 VTNQASFENIFVKAKAKF--GGVDVLVNNAGV 119
V ++ + + + V V+ AGV
Sbjct: 593 VADRETLAKVLASIPDEHPLTAV---VHAAGV 621
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 30.7 bits (70), Expect = 0.56
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 35 VTGGTKGLGKSFVEHFLKEH--AKVAFGGTSVAL--GEQQEKEYSKEYGSDRVLFCPLDV 90
+TGGT GK FV L K+ + E ++ E + E+ R+ F DV
Sbjct: 26 ITGGTGSFGKCFVRKVLDTTNAKKI------IVYSRDELKQSEMAMEFNDPRMRFFIGDV 79
Query: 91 TNQASFENIFVKAKAKFGGVDVLVNNA 117
+ GVD+ ++ A
Sbjct: 80 RDLERLNYALE-------GVDICIHAA 99
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 29.9 bits (66), Expect = 1.3
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 20 EERPYNVQI-----KGLVAIVTGGTKGLGKSFV-----EHFLK-----EHAKVAFGGTSV 64
+ R Y +++ KG I+ T G GK+FV EH LK + KV F +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPT-GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 71
Query: 65 ALGEQQEKEYSKEYGSDRVLFCPL--DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE 122
+ EQ + +SK + + E I +LVNN G
Sbjct: 72 PVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 131
Query: 123 DK 124
Sbjct: 132 PS 133
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 29.9 bits (66), Expect = 1.4
Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 9 AGVSLTWDESTEERPYNVQIKGLVAIVTGG------TKGLGKSFV-----EHFLK----- 52
G E+ + R Y QI+ + G G GK+FV EH +
Sbjct: 237 IGKPPPVYETKKARSY--QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAG 294
Query: 53 EHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL--DVTNQASFENIFVKAKAKFGGV 110
AKV F T V + EQQ+ + + + + + S E + +
Sbjct: 295 RKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTP 354
Query: 111 DVLVN 115
+LVN
Sbjct: 355 QILVN 359
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 29.9 bits (66), Expect = 1.4
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 9 AGVSLTWDESTEERPYNVQI-----KGLVAIVTGGTKGLGKSFV-----EHFLK-----E 53
G E+ + R Y +++ G A++ G GK+FV EH +
Sbjct: 237 IGKPPPVYETKKARSYQIELAQPAINGKNALICAP-TGSGKTFVSILICEHHFQNMPAGR 295
Query: 54 HAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPL--DVTNQASFENIFVKAKAKFGGVD 111
AKV F T V + EQQ+ + + + + + S E + +
Sbjct: 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQ 355
Query: 112 VLVN 115
+LVN
Sbjct: 356 ILVN 359
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 29.4 bits (66), Expect = 1.5
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 10/81 (12%)
Query: 42 LGKSFVEHFLKEHAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDVTNQA------- 94
LG + + + + P D+ +
Sbjct: 47 LGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKPEDV--PQDIKDNKRYAGVDG 104
Query: 95 -SFENIFVKAKAKFGGVDVLV 114
+ + + VK K G +D+LV
Sbjct: 105 YTIKEVAVKVKQDLGNIDILV 125
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 28.9 bits (65), Expect = 2.1
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 40/168 (23%)
Query: 35 VTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALGEQQEK-EYSKEYGSDRVLFCPLDVTNQ 93
V G + + + + + VA+ +E+ +E G+ ++ ++
Sbjct: 26 VVGANGKVARYLLSELKNKGHEP------VAMVRNEEQGPELRERGASDIVVA--NLEED 77
Query: 94 ASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKGSVRGQLLAIEHMGQHK 153
+ A F +D +V AG G +KTI I+ G+++ I+ +
Sbjct: 78 F--------SHA-FASIDAVVFAAGSGP--HTGADKTILIDLWGAIK----TIQEAEKRG 122
Query: 154 GGRGGTVVMISS----RTALIPGYLWPLYSTTKKAQ--------LAYT 189
R +M+SS P + Y K+ L YT
Sbjct: 123 IKR---FIMVSSVGTVDPDQGPMNMRH-YLVAKRLADDELKRSSLDYT 166
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 29.0 bits (65), Expect = 2.2
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 75 SKEYGSDRVLFCPLDVTNQA--------SFENIFVKAKAKFGGVDVLV 114
+ + + + P +V++ + + +A G +D+LV
Sbjct: 93 DAVFDTPQDV--PPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILV 138
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 29.1 bits (65), Expect = 2.3
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKE-HAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFCPLDV 90
+ ++ G T +G+ + L H S A ++ + + + + +
Sbjct: 7 ILLI-GATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 91 TNQASFENIFVKAKAKFGGVDVLVNN-AGVGYEDKDNW 127
+ AS VDV+++ + E + N
Sbjct: 66 DDHASLVEAVK-------NVDVVISTVGSLQIESQVNI 96
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 29.1 bits (65), Expect = 2.4
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 81 DRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLV 114
+ ++ + E++ K+G +++LV
Sbjct: 85 ETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLV 118
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 29.0 bits (64), Expect = 2.5
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 23 PYNVQIKGLVAIVTG------GTKGLGKSFV-----EHFLKEHAKVAFGGTSVALGEQQE 71
Q + + + G GK+ V + K + AL Q+
Sbjct: 40 LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKF 99
Query: 72 KEYSKEYGSDRVLFCPLDVT 91
+++ + + + DV
Sbjct: 100 RDFKETFDDVNIGLITGDVQ 119
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 28.7 bits (64), Expect = 2.5
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 16/96 (16%)
Query: 27 QIKGLVAIVTGGTKGLGKSFVEHFLKEHAKVAFGGTSVALG--EQQEKEYSKEYGSDRVL 84
+K + I GGT +G V+ LK + E+ S +
Sbjct: 9 GMKSKILIF-GGTGYIGNHMVKGSLKLGHPT------YVFTRPNSSKTTLLDEFQSLGAI 61
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVG 120
++ + VDV+++
Sbjct: 62 IVKGELDEHEKLVELMK-------KVDVVISALAFP 90
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 28.4 bits (63), Expect = 3.0
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 32 VAIVTGGTKGLGKSFVEHFLKE-HAKVAF--GGTSVALGEQQEKEYSKEYGSDRVLFCPL 88
V IV GGT +GK V + H + + Q Y K+ G
Sbjct: 7 VLIV-GGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLG---AKLIEA 62
Query: 89 DVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKD 125
+ + + VDV+++ G
Sbjct: 63 SLDDHQRLVDALK-------QVDVVISALAGGVLSHH 92
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 28.4 bits (63), Expect = 3.3
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 22 RPYNVQIKGLVAIVTGGTKGLGKSFVEH-----FLKEHAKVAFGGTSVALGEQQEKEYSK 76
+PY V+I VA V + E V GGT+ + + Y
Sbjct: 116 KPYEVEI--CVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRA 173
Query: 77 E 77
+
Sbjct: 174 D 174
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 28.7 bits (63), Expect = 3.6
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 20 EERPYNVQI-----KGLVAIVTGGTKGLGKSFV-----EHFLK-----EHAKVAFGGTSV 64
+ R Y +++ KG I+ T G GK+FV EH LK + KV F +
Sbjct: 4 KPRNYQLELALPAKKGKNTIICAPT-GCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQI 62
Query: 65 ALGEQQEKEYSKEYG--SDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYE 122
+ EQQ +S+ + + ++ S ++I +LVNN G
Sbjct: 63 PVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI 122
Query: 123 DK 124
Sbjct: 123 PS 124
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 28.1 bits (62), Expect = 4.2
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKE--HAKVAFGGTSVALGEQQEKEYSKEYGSDRVLFC 86
KG V I G T +G+ L + + + + + ++ G +
Sbjct: 10 KGRVLIA-GATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKG---AIIV 65
Query: 87 PLDVTNQASFENIFVKAKAKFGGVDVLVNNAG 118
+ Q + E I K +D++V+ G
Sbjct: 66 YGLINEQEAMEKIL-----KEHEIDIVVSTVG 92
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 28.1 bits (63), Expect = 4.2
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 72 KEYSKEYGSDRVLFC------PLDVTNQASFENIFVKAKAKFGGVDVLV 114
+ + + ++ + + + FG +D+LV
Sbjct: 76 YPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILV 124
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 27.9 bits (63), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAF-GGTSV 64
+G++ +VTG +G VEH + F GGT+
Sbjct: 209 EGIIQVVTGRGSVIGDHLVEH--PGIDMITFTGGTTT 243
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 27.8 bits (61), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 224 HPFIPELKPIIGNRSMFTYCTKMVSTIA 251
H PE + IG+RS + C + +A
Sbjct: 581 HELCPEERHHIGDRS-LSLCNMFLDEMA 607
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport
protein, galactofuranose; HET: GZL; 1.20A {Escherichia
coli}
Length = 306
Score = 27.7 bits (62), Expect = 6.4
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 79 GSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDINFKGS 138
G D + P+ T +E + +AK + V + + + +DK + T+ +
Sbjct: 58 GVDAIFIAPVVATG---WEPVLKEAKDA--EIPVFLLDRSIDVKDKSLYMTTVTADNILE 112
Query: 139 VRGQLLAIEHMGQHKGGRGGTVVMI 163
G+L+ + + + G+ VV +
Sbjct: 113 --GKLIG-DWLVKEVNGKPCNVVEL 134
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.9 bits (62), Expect = 7.0
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 34 IVTGGTKGLGKSFVEHFLKEHAK--VAFGGTSVALGEQQEKEYS-KEYGSDRVLFCPLDV 90
++TGG G G + A+ V + + G Q + + G +VL +
Sbjct: 1888 VITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGV-QVLVSTSNA 1946
Query: 91 TNQASFENIF--VKAKAKFGGVDVLVNNAGV 119
++ ++ GGV N A V
Sbjct: 1947 SSLDGARSLITEATQLGPVGGV---FNLAMV 1974
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin
modification, transcription repression, MBT repeat
structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB:
4fl6_A* 1wjs_A
Length = 324
Score = 27.2 bits (60), Expect = 7.3
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 265 GQALDNGLALTPPMGW----MAWQRYRCNTDCDNYPDECIRPEKVSQ 307
G G L PP G+ WQ Y P + ++
Sbjct: 93 GWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITV 139
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 27.1 bits (61), Expect = 9.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 29 KGLVAIVTGGTKGLGKSFVEHFLKEHAKVAF-GGTSV 64
G+ +TG +G VEH + + F G T +
Sbjct: 200 AGVFNTITGRGSEIGDYIVEH--QAVNFINFTGSTGI 234
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 26.9 bits (60), Expect = 9.4
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 10/58 (17%)
Query: 85 FCPLDVTNQASFENIFVKAKAKFGGVDVLVNNA---GVGYEDKDNWEKTIDINFKGSV 139
F ++ + E++ K + + A E D+N
Sbjct: 49 FEVVNALDFNQIEHLVEVHK-----ITDIYLMAALLSATAEKNP--AFAWDLNMNSLF 99
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding
protein, X-RAY crystallography, hinge bending,
conformational change; 1.7A {Escherichia coli} SCOP:
c.93.1.1 PDB: 1gub_A 1rpj_A*
Length = 288
Score = 26.9 bits (60), Expect = 9.6
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 79 GSDRVLFCPLDVTNQASFENIFVKAKAKFGGVDVLVNNAGVGYEDKDNWEKTIDI----- 133
+ F PL N +A K G+ ++ + + ++ ++
Sbjct: 59 NYKGIAFAPLSSVN---LVMPVARAWKK--GIYLVNLDEKIDMDNLKKAGGNVEAFVTTD 113
Query: 134 NFKGSVRGQLLAIEHMGQHKGGRGGTVVMIS 164
N G A + G GG V +I
Sbjct: 114 NVAV---GAKGA-SFIIDKLGAEGGEVAIIE 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.420
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,260,191
Number of extensions: 308653
Number of successful extensions: 1516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 276
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)