Query psy10969
Match_columns 204
No_of_seqs 109 out of 143
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 23:04:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03665 UPF0172: Uncharacteri 100.0 2E-78 4.4E-83 509.8 20.0 191 1-196 1-196 (196)
2 KOG3289|consensus 100.0 1.5E-78 3.2E-83 498.2 18.3 195 1-200 1-197 (199)
3 cd08060 MPN_UPF0172 Mov34/MPN/ 100.0 1.9E-61 4.2E-66 402.6 19.7 180 6-191 1-182 (182)
4 cd07767 MPN Mpr1p, Pad1p N-ter 99.7 2.9E-16 6.3E-21 118.9 12.6 107 12-127 1-108 (116)
5 cd08069 MPN_RPN11_CSN5 Mov34/M 99.0 1.8E-08 3.9E-13 88.8 14.4 130 3-141 11-145 (268)
6 cd08065 MPN_eIF3h Mpr1p, Pad1p 98.9 4.4E-08 9.5E-13 86.1 14.9 126 3-142 2-136 (266)
7 cd08057 MPN_euk_non_mb Mpr1p, 98.8 1.8E-07 3.9E-12 75.7 15.1 130 4-142 1-136 (157)
8 smart00232 JAB_MPN JAB/MPN dom 98.8 4.1E-07 8.9E-12 70.1 16.1 126 4-140 2-132 (135)
9 PF01398 JAB: JAB1/Mov34/MPN/P 98.8 5.3E-08 1.2E-12 74.2 10.0 103 3-114 5-113 (114)
10 cd08067 MPN_2A_DUB Mov34/MPN/P 98.7 1.2E-06 2.5E-11 73.7 16.3 130 3-142 6-146 (187)
11 cd08062 MPN_RPN7_8 Mpr1p, Pad1 98.7 5.6E-07 1.2E-11 79.9 13.9 124 3-141 2-134 (280)
12 cd08064 MPN_eIF3f Mpr1p, Pad1p 98.4 3E-06 6.5E-11 74.4 12.1 123 4-141 1-130 (265)
13 cd08058 MPN_euk_mb Mpr1p, Pad1 98.4 9.5E-06 2.1E-10 62.7 12.4 107 10-125 2-108 (119)
14 cd08063 MPN_CSN6 Mpr1p, Pad1p 98.4 5.5E-06 1.2E-10 73.6 11.8 127 3-141 2-138 (288)
15 PLN03246 26S proteasome regula 98.3 1.4E-05 3.1E-10 71.8 13.8 124 3-141 7-139 (303)
16 cd08068 MPN_BRCC36 Mov34/MPN/P 98.2 0.0001 2.2E-09 64.5 16.0 140 2-143 2-152 (244)
17 cd08066 MPN_AMSH_like Mov34/MP 98.1 0.00013 2.8E-09 60.6 14.0 125 4-146 4-135 (173)
18 KOG1554|consensus 97.7 0.00039 8.4E-09 62.2 10.1 111 3-125 54-174 (347)
19 cd08070 MPN_like Mpr1p, Pad1p 97.5 0.0032 6.9E-08 49.0 12.8 114 9-143 2-121 (128)
20 PF14464 Prok-JAB: Prokaryotic 96.6 0.0093 2E-07 44.1 6.5 74 8-98 2-76 (104)
21 cd08072 MPN_archaeal Mov34/MPN 96.5 0.07 1.5E-06 41.4 11.3 108 6-143 1-110 (117)
22 KOG1556|consensus 95.9 0.15 3.3E-06 45.1 11.6 112 4-129 11-133 (309)
23 COG1310 Predicted metal-depend 94.2 0.23 5E-06 38.9 7.1 83 4-98 2-86 (134)
24 cd08059 MPN_prok_mb Mpr1p, Pad 92.4 1.3 2.7E-05 32.8 8.3 80 11-108 3-82 (101)
25 TIGR02256 ICE_VC0181 integrati 92.3 1.7 3.7E-05 34.7 9.4 89 24-121 17-111 (131)
26 KOG1555|consensus 92.2 0.52 1.1E-05 42.9 7.0 115 4-122 33-155 (316)
27 KOG2975|consensus 91.6 1.9 4.1E-05 38.6 9.6 121 6-141 25-150 (288)
28 KOG1560|consensus 89.5 2.9 6.2E-05 37.8 8.9 129 4-148 15-169 (339)
29 cd08073 MPN_NLPC_P60 Mpr1p, Pa 82.5 5.4 0.00012 30.4 6.3 68 10-98 2-76 (108)
30 KOG3050|consensus 79.6 16 0.00035 32.6 8.8 102 23-141 36-143 (299)
31 COG3933 Transcriptional antite 53.2 56 0.0012 31.5 7.2 88 8-127 89-178 (470)
32 cd02983 P5_C P5 family, C-term 51.7 1.1E+02 0.0024 23.7 8.4 98 69-171 11-119 (130)
33 smart00857 Resolvase Resolvase 48.5 1.2E+02 0.0026 23.1 7.8 62 64-127 17-78 (148)
34 cd03767 SR_Res_par Serine reco 44.0 98 0.0021 24.3 6.4 58 65-127 15-72 (146)
35 TIGR03735 PRTRC_A PRTRC system 44.0 85 0.0018 26.7 6.3 68 5-92 74-146 (192)
36 cd08061 MPN_NPL4 Mov34/MPN/PAD 44.0 2.4E+02 0.0051 25.2 10.0 107 4-111 13-126 (274)
37 PF14778 ODR4-like: Olfactory 41.0 46 0.00099 30.6 4.6 57 28-89 1-72 (362)
38 PRK02399 hypothetical protein; 40.7 83 0.0018 29.8 6.3 33 153-185 354-388 (406)
39 PF03808 Glyco_tran_WecB: Glyc 39.7 97 0.0021 25.1 5.9 43 78-127 73-115 (172)
40 PRK11558 putative ssRNA endonu 35.7 1.3E+02 0.0029 22.9 5.6 55 83-149 28-82 (97)
41 KOG3265|consensus 35.3 48 0.001 29.3 3.5 40 76-115 102-145 (250)
42 KOG3096|consensus 35.1 44 0.00094 29.0 3.2 66 46-114 5-72 (225)
43 TIGR02364 dha_pts dihydroxyace 34.3 1.6E+02 0.0035 22.9 6.2 53 63-122 12-67 (125)
44 cd08056 MPN_PRP8 Mpr1p, Pad1p 32.6 3.2E+02 0.007 24.2 8.4 123 9-150 42-176 (252)
45 cd00338 Ser_Recombinase Serine 32.6 2.1E+02 0.0045 21.3 7.9 47 65-111 17-63 (137)
46 PF06792 UPF0261: Uncharacteri 32.5 1.2E+02 0.0026 28.7 6.0 34 152-185 352-388 (403)
47 COG2343 Uncharacterized protei 32.1 36 0.00078 27.4 2.1 83 15-110 21-116 (132)
48 PF11732 Thoc2: Transcription- 31.5 37 0.00081 24.7 2.0 19 54-74 5-23 (77)
49 PF09707 Cas_Cas2CT1978: CRISP 31.0 2.2E+02 0.0048 21.1 6.1 32 83-121 26-57 (86)
50 PF12062 HSNSD: heparan sulfat 30.8 42 0.00092 32.4 2.7 27 65-91 126-152 (487)
51 TIGR01873 cas_CT1978 CRISPR-as 28.8 2.2E+02 0.0048 21.2 5.7 32 83-121 26-58 (87)
52 PRK06934 flavodoxin; Provision 28.2 2.4E+02 0.0052 24.3 6.7 55 60-115 13-86 (221)
53 PF14097 SpoVAE: Stage V sporu 27.9 1.7E+02 0.0037 24.7 5.5 56 65-127 10-65 (180)
54 PF13554 DUF4128: Bacteriophag 27.7 63 0.0014 25.2 2.8 36 76-117 57-92 (127)
55 cd03770 SR_TndX_transposase Se 26.7 3E+02 0.0065 21.2 8.0 51 64-115 20-70 (140)
56 COG2065 PyrR Pyrimidine operon 25.4 1.3E+02 0.0029 25.3 4.5 40 65-113 18-57 (179)
57 PF00056 Ldh_1_N: lactate/mala 24.6 99 0.0021 24.2 3.5 24 100-123 96-119 (141)
58 PF09831 DUF2058: Uncharacteri 22.9 71 0.0015 26.9 2.4 37 78-123 119-155 (177)
59 cd06533 Glyco_transf_WecG_TagA 20.5 2.8E+02 0.006 22.4 5.5 43 78-127 71-113 (171)
60 PF10483 Elong_Iki1: Elongator 20.5 1.4E+02 0.0029 26.4 3.9 44 41-90 87-131 (280)
61 PF14201 DUF4318: Domain of un 20.1 87 0.0019 22.6 2.1 22 61-82 14-35 (74)
No 1
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function.
Probab=100.00 E-value=2e-78 Score=509.82 Aligned_cols=191 Identities=51% Similarity=0.879 Sum_probs=179.2
Q ss_pred CCceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCc
Q psy10969 1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGL 80 (204)
Q Consensus 1 M~~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l 80 (204)
|++|+||++||+||+|||||||||+|||||||++. ++++.|.|+|||||||++++|+||||+||+|||+||+++|+
T Consensus 1 m~~v~is~~AY~K~~LHaaKyP~~aVnGvLlg~~~----~~~~~v~i~DaVPLfH~~~~L~PmlEvAL~qvd~~~~~~gl 76 (196)
T PF03665_consen 1 MSSVEISSRAYAKMILHAAKYPHCAVNGVLLGKSS----KSSSEVEIVDAVPLFHHWLSLSPMLEVALAQVDAYAKSNGL 76 (196)
T ss_pred CceEEEcHHHHHHHHHHhccCCCCceeeEEEeccC----CCCceEEEeeceeccccccCcchHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999873 34445999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEE---ecCCceeeccCC-ccccc
Q psy10969 81 VIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQ---NSDGKWKPVSKN-SIIVD 156 (204)
Q Consensus 81 ~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~---~~~~~W~~~~~~-~~~~~ 156 (204)
+|||||||||+++|.+|+ ++|+|||+||+++|++||++||||+||+..++.+++.+|+ .++++|++.++. ..+..
T Consensus 77 ~IvGyY~Ane~~~d~~~~-~~a~kiad~I~~~~~~a~ll~idn~kl~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 155 (196)
T PF03665_consen 77 VIVGYYQANERLDDNSPS-PVAEKIADKIAENFSDACLLMIDNKKLSSDCKAPAISVYQRDGNSGGKWKSKDKSSVLLES 155 (196)
T ss_pred EEEEEEEeccccccCCCC-HHHHHHHHHHHhhCCCcEEEEEECcccccccCCCcceeeeeeccCCCceeecCCCceeeeC
Confidence 999999999999999999 9999999999999999999999999999988999999999 677899998754 44444
Q ss_pred -cchHHHHHHHHhhcccCcccccccccCCCCCCCCChHHHH
Q psy10969 157 -QTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNE 196 (204)
Q Consensus 157 -~~~~~~~~~~l~~~~~~~lvDFDdHLddi~~DW~N~~l~~ 196 (204)
+++.++++.++++++|++|+|||||||||++||+|++||+
T Consensus 156 ~~~~~~~~~~~l~~~~~~~lvDFDdHLddi~~DW~N~~ln~ 196 (196)
T PF03665_consen 156 WEEALEIVSDLLKSKKYRQLVDFDDHLDDISKDWLNPELNK 196 (196)
T ss_pred cHHHHHHHHHHHHhCCcCcccchhhccCCCccccCChhhcC
Confidence 8899999999999999999999999999999999999985
No 2
>KOG3289|consensus
Probab=100.00 E-value=1.5e-78 Score=498.24 Aligned_cols=195 Identities=43% Similarity=0.748 Sum_probs=188.3
Q ss_pred CCceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCc
Q psy10969 1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGL 80 (204)
Q Consensus 1 M~~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l 80 (204)
|++|++|++||+||+||||||||++|||+|||.. +++|++++|+|||||||+++.|+|||||||++||+||.+.|+
T Consensus 1 m~~veis~~aY~kmiLH~akyph~aVnGLLla~~----~~kg~~v~itdcVPLfH~~laLaPmlEvAl~lId~~~~~~Gl 76 (199)
T KOG3289|consen 1 MGEVEISALAYVKMILHAAKYPHAAVNGLLLAPA----TGKGECVEITDCVPLFHSHLALAPMLEVALNLIDVWGAQAGL 76 (199)
T ss_pred CCceeehhhHHHHHHHHhccCcccceeeEEEecc----CCCCCeEEEEecchhhccccccccHHHHHHHHHHHHHHhcCe
Confidence 8999999999999999999999999999999976 356789999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCCceeeccCC-ccccc-cc
Q psy10969 81 VIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVD-QT 158 (204)
Q Consensus 81 ~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~~W~~~~~~-~~~~~-~~ 158 (204)
+|+||||||||++|.++. ++|.||||||+|+||+|++||+||++|+.+++.|++++|+.++.+|++++++ ..+.+ ++
T Consensus 77 viaGyy~Ane~~~D~s~~-~~A~kiadrIse~f~~A~ilv~dn~~l~~~~e~~~v~v~e~~g~rW~~~d~~~~~~~d~~e 155 (199)
T KOG3289|consen 77 VIAGYYHANERVNDQSLN-PVALKIADRISEFFPDAAILVLDNKKLVPQCERPPVIVLEDQGLRWRPKDKTLVQWSDWLE 155 (199)
T ss_pred EEEEEeecCCCccccCcc-HHHHHHHHHHHhhCCCCeEEEEeccccccccCCCCEEEeeccCcceeecCCchhhhhcchh
Confidence 999999999999999999 9999999999999999999999999999999999999999889999999877 77888 89
Q ss_pred hHHHHHHHHhhcccCcccccccccCCCCCCCCChHHHHHHHH
Q psy10969 159 TLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEK 200 (204)
Q Consensus 159 ~~~~~~~~l~~~~~~~lvDFDdHLddi~~DW~N~~l~~~i~~ 200 (204)
++.+++.+|++++|++|+|||||||||++||+|+.||+.+.|
T Consensus 156 ~~~~ls~ll~~~~~r~LvDfDnHLDd~~~DwtN~~Lnn~l~~ 197 (199)
T KOG3289|consen 156 GRQMLSALLESRAYRDLVDFDNHLDDPRKDWTNPRLNNQLTQ 197 (199)
T ss_pred HHHHHHHHHhhhhhhhhcchhhcccCchhcccChhhhhhhhh
Confidence 999999999999999999999999999999999999999876
No 3
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=100.00 E-value=1.9e-61 Score=402.62 Aligned_cols=180 Identities=46% Similarity=0.812 Sum_probs=168.2
Q ss_pred ecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEE
Q psy10969 6 FTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGY 85 (204)
Q Consensus 6 is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGy 85 (204)
|+.+||.||++||+|||+++|||+|||+. ..++.+.|+|+|||||+++.|+||+||||.|||.||+++|+.||||
T Consensus 1 is~~ay~ki~~HA~k~p~~evcGlLlG~~-----~~~~~~~V~d~vPl~h~~~~l~P~~Eval~~ve~~~~~~gl~IvG~ 75 (182)
T cd08060 1 LSTLAYVKMLLHAAKYPHCAVNGLLLGKK-----SSGGSVEITDAVPLFHSCLALAPMLEVALALVDAYCKSSGLVIVGY 75 (182)
T ss_pred CCHHHHHHHHHHHHHcCCchheEEEEeee-----cCCCCEEEEEEEEcCCCccccCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999999986 2255689999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCCceeeccCC-ccccc-cchHHHH
Q psy10969 86 YLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVD-QTTLSSV 163 (204)
Q Consensus 86 Y~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~~W~~~~~~-~~~~~-~~~~~~~ 163 (204)
||||++++|.+|+ ++|+||||||+++||+||++||||+|++..+..+++.+|..++++|++++.. ..+.. +++.+.+
T Consensus 76 Yhsh~~~~d~~~~-~~a~kIadki~~~~~~a~ll~vdn~~l~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~ 154 (182)
T cd08060 76 YQANERLDDSSPS-PVAKKIADKIAENFSNACLLMVDNEKLTLDCKGNALVVYKDKGGRWKVKELRGINLLLWESANEIL 154 (182)
T ss_pred EecCCcccCCCCc-HHHHHHHHHHHHhCCCCEEEEEeCccccccccCCceEEEEecCCCceEcccccchhccchhHHHHH
Confidence 9999999999999 9999999999999999999999999999888888999999999999987644 33433 6789999
Q ss_pred HHHHhhcccCcccccccccCCCCCCCCC
Q psy10969 164 STLIQRNISRHLVDFDNHLDNLSADWTN 191 (204)
Q Consensus 164 ~~~l~~~~~~~lvDFDdHLddi~~DW~N 191 (204)
+.++++++|++|+|||||||||++||+|
T Consensus 155 ~~~l~~~~~~~l~DFDdHLddi~~Dw~N 182 (182)
T cd08060 155 SALLSSKAYRNLVDFDDHLDDISLDWLN 182 (182)
T ss_pred HHHHhhCcccccccchhcccCCccCcCC
Confidence 9999999999999999999999999998
No 4
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J
Probab=99.70 E-value=2.9e-16 Score=118.94 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=92.6
Q ss_pred HHHHhhhhcCC-CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeCC
Q psy10969 12 CKMILHAVKYP-HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANE 90 (204)
Q Consensus 12 ~K~iLHAaKyP-~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~Ane 90 (204)
+|+++|++|+| ...|+|+|+|+.. ++ +.+++++|++|......|+.+.++.+++.++...|+.||||||++.
T Consensus 1 ~k~il~~a~~~~~~ev~G~L~G~~~------~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVGwyhshp 73 (116)
T cd07767 1 LKMFLDAAKSINGKEVIGLLYGSKT------KK-VLDVDEVIAVPFDEGDKDDNVWFLMYLDFKKLNAGLRIVGWYHTHP 73 (116)
T ss_pred CHhHHHHHhcCCCcEEEEEeEEEEc------CC-EEEEEEEEecccCCCCCccHHHHHHHHHHHHhcCCCeEEEEEEcCC
Confidence 58999999998 7999999999872 22 7789999999998888999999999999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q psy10969 91 NIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT 127 (204)
Q Consensus 91 ~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~ 127 (204)
... ..++ +......+++++.+++++++++|.++..
T Consensus 74 ~~~-~~~s-~~dv~~~~~~q~~~~~~v~li~~~~~~~ 108 (116)
T cd07767 74 KPS-CFLS-PNDLATHELFQRYFPEKVMIIVDVKPKD 108 (116)
T ss_pred CCC-CccC-HHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 654 2466 6666677999999999999999998864
No 5
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=98.97 E-value=1.8e-08 Score=88.79 Aligned_cols=130 Identities=12% Similarity=0.070 Sum_probs=88.4
Q ss_pred ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh--HHHHHHHHHH-HHh--hh
Q psy10969 3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP--MIEIALTQIS-SYA--QS 77 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP--mlEvAL~qvd-~y~--~~ 77 (204)
.|.|++.|+.||+.||.+-....|+|+|+|.. .++.+.|+||+|+-|....... -.|.-..+++ ... ..
T Consensus 11 ~V~Is~~allkil~Ha~~~~p~Ev~GlLlG~~------~~~~v~Vt~~fp~p~~~t~~~v~~~~e~~~~m~~~~~~~~~~ 84 (268)
T cd08069 11 KVYISSLALLKMLKHARAGGPIEVMGLMLGKV------DDYTIIVVDVFALPVEGTETRVNAQDEFQEYMVQYEMLKQTG 84 (268)
T ss_pred EEEECHHHHHHHHHHHhccCCceEEEEEEeee------cCCeEEEEEEEECCcCCCCCceeccHHHHHHHHHHHHHHHhC
Confidence 48899999999999998887789999999986 3557999999999886543210 0122222232 122 34
Q ss_pred CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 78 NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 78 ~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
.++.|||+||...... .-|| ..-..+-..-+...+.++.|++|..+=. ..+...+..|...
T Consensus 85 ~~~~vVGWYHSHP~~g-~~~S-~~Dv~tq~~yq~~~~~~V~lViDP~~t~-~~g~~~i~Afr~~ 145 (268)
T cd08069 85 RPENVVGWYHSHPGYG-CWLS-GIDVNTQQLNQQLQDPFVAVVVDPIRSL-VKGKVVIGAFRTI 145 (268)
T ss_pred CCceeEeeeccCCCcC-CcCC-HHHHHHHHHHHhcCCCcEEEEEeCCccc-cCCcceeeEEEEE
Confidence 7799999999986655 3577 6666666666666678899999963321 1233445554444
No 6
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=98.92 E-value=4.4e-08 Score=86.06 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=86.8
Q ss_pred ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh-----HHHHHHHHHHHHhhh
Q psy10969 3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP-----MIEIALTQISSYAQS 77 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP-----mlEvAL~qvd~y~~~ 77 (204)
.|.|++.++.||+-||-+-....|+|+|||.. .++.++|++|.|+=|....-.+ ..+--+.+++ .+++
T Consensus 2 ~V~I~~~vllkIv~H~~~~~p~~v~G~LLG~~------~~~~leVtn~Fp~P~~~~~~~~~~~~~~~~yq~~m~~-~~r~ 74 (266)
T cd08065 2 SVQIDGLVVLKIIKHCKEELPELVQGQLLGLD------VGGTLEVTNCFPFPKSEEDDSDRADEDIADYQLEMMR-LLRE 74 (266)
T ss_pred EEEEeHHHHHHHHHHHhcCCCcEEEEEEeeeE------cCCEEEEEeccCCCCCCCCCcchhhhhHHHHHHHHHH-HHHH
Confidence 48999999999999999999999999999987 3568999999999997643332 1122233444 3567
Q ss_pred CCc--eEEEEEEeCCCCCCCCCCHHHHHHHHHHH--HhhCCCcEEEEEeCccccccccCccEEEEEecC
Q psy10969 78 NGL--VIAGYYLANENIKDVSYDKPYQSRIADKI--AEFFPAACLIVLDNRKLTQTMQESALIVAQNSD 142 (204)
Q Consensus 78 ~~l--~IvGyY~Ane~~~d~~~~~~~a~kIadkI--~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~ 142 (204)
.|. .||||||... .+ ...+ +. .|-... ....++++.|++|-.+- ..+...+..|....
T Consensus 75 v~~~e~iVGWY~S~p-~~-~~~~-~s--~id~~~~~q~~~~~~v~Li~D~~~s--~~g~l~lkAyrl~~ 136 (266)
T cd08065 75 VNVDHNHVGWYQSTY-LG-SFFT-RD--LIETQYNYQEAIEESVVLVYDPSKT--SQGSLSLKAYRLSE 136 (266)
T ss_pred hCCCCcEEEeEeecC-CC-CcCC-HH--HHHHHHHHhccCCCCEEEEECCCcc--cccceeeEEEEEcH
Confidence 777 9999999876 33 2222 11 121211 22237789999997653 24556777777664
No 7
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic. This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import
Probab=98.85 E-value=1.8e-07 Score=75.75 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=92.3
Q ss_pred eeecHHHHHHHHhhhhcCC--CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccc--hhHHHHHHHHHHHHhh-hC
Q psy10969 4 ISFTDRAYCKMILHAVKYP--HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV--TPMIEIALTQISSYAQ-SN 78 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKyP--~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~L--sPmlEvAL~qvd~y~~-~~ 78 (204)
|.|.+.+..||+=|+.+-. ...|.|+|||.. .++.+.|+||.|+-|..-.- .--.|-.-.+++.+-+ -.
T Consensus 1 V~ihplvll~I~dh~~R~~~~~~~v~G~LlG~~------~~~~veV~nsF~lp~~~~~~~~~~d~~y~~~m~~~~~~v~~ 74 (157)
T cd08057 1 VQLHPLVLLNISDHYTRRKYGIKRVIGVLLGYV------DGDKIEVTNSFELPFDEEEESIFIDTEYLEKRYNLHKKVYP 74 (157)
T ss_pred CEEccHHHhhHHHHHHhccCCCCeEEEEEEeEE------eCCEEEEEEeEEccccCCCcchhhhHHHHHHHHHHHHHhCC
Confidence 5789999999999998887 789999999987 36689999999999965322 1223344445554433 25
Q ss_pred CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhh-CCCcEEEEEeCccccccccCccEEEEEecC
Q psy10969 79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEF-FPAACLIVLDNRKLTQTMQESALIVAQNSD 142 (204)
Q Consensus 79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~-~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~ 142 (204)
+..+||||+...... +.+. .....|-+.+... .+.++++++|-.+.+ ..+.-++..|....
T Consensus 75 ~~~vVGWY~~~~~~~-~~~~-~~~~~i~~~~~~~~~~~~v~L~~D~~~~~-~~~~l~i~ay~~~~ 136 (157)
T cd08057 75 QEKIVGWYSIGSNNS-NEIS-KSDNSLHSQFSLISEENPLILILDPSLQS-DSEKLEISTFTSAQ 136 (157)
T ss_pred CCCEEEEEeecCCCC-CCCC-hhHHHHHHHHHhccCCCCEEEEEcCCccc-CCCcccEEEEEEec
Confidence 689999999875543 3455 5666677777665 677899999975532 23445677776664
No 8
>smart00232 JAB_MPN JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.
Probab=98.83 E-value=4.1e-07 Score=70.09 Aligned_cols=126 Identities=12% Similarity=0.104 Sum_probs=87.6
Q ss_pred eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCccc----chhHHHHHHHHHHH-HhhhC
Q psy10969 4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ----VTPMIEIALTQISS-YAQSN 78 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~----LsPmlEvAL~qvd~-y~~~~ 78 (204)
+.+.+.++.||+-|+.+.....++|+|+|+. .++.+.|++++|+-...-. --++ +---.+.+. .....
T Consensus 2 v~i~~~v~~~i~~h~~~~~p~e~~G~L~G~~------~~~~~~i~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 74 (135)
T smart00232 2 VKVHPLVPLNILKHAIRDGPEEVCGVLLGKS------NKDRPEVKEVFAVPNEPQDDSVQEYDE-DYSHLMDEELKKVNK 74 (135)
T ss_pred EEEcHHHHHHHHHHHhcCCCcEEEEEEEEEE------cCCEEEEEEEEecCcCCCCcchhhhhh-hHHHHHHHHHHhhCC
Confidence 6899999999999999998899999999987 3457999999998755311 0111 111122222 33468
Q ss_pred CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEe
Q psy10969 79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQN 140 (204)
Q Consensus 79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~ 140 (204)
|+.+||+||...... ..|+ ..-..++.......+.++.+.+|..+-.. +.-++..|..
T Consensus 75 ~~~~vGwyhshp~~~-~~pS-~~D~~~~~~~~~~~~~~~~~~v~~~~s~~--g~~~~~af~~ 132 (135)
T smart00232 75 DLEIVGWYHSHPDES-PFPS-EVDVATHESYQAPWPISVVLIVDPIKSFQ--GRLSLRAFRL 132 (135)
T ss_pred CceEEEEEEcCCCCC-CCcC-HHHHHHHHHHHhcCCceEEEEECCCcccc--CcEEEEEEEe
Confidence 899999999976643 3577 77777888877777777777787665431 2334555543
No 9
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.
Probab=98.80 E-value=5.3e-08 Score=74.21 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=74.4
Q ss_pred ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCC-ceEEEeceecccCcccch----hHHHHHHHHHHHHhhh
Q psy10969 3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPK-KLTYVDAIPLFHLCLQVT----PMIEIALTQISSYAQS 77 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~-~v~i~DaVPLfH~~l~Ls----PmlEvAL~qvd~y~~~ 77 (204)
.|.|++.+..||+-|+.+.+...|.|+|+|... ++ .+.|+|++|+=|....-. +.... ..+++.+-+-
T Consensus 5 ~V~i~p~vll~i~~h~~r~~~~~v~G~LlG~~~------~~~~v~I~~~f~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (114)
T PF01398_consen 5 TVQIHPLVLLKIIDHATRSSPNEVIGLLLGTQD------GDNTVEITNSFPVPHSESEDDCDMDDEDFQ-KKMIELLKKV 77 (114)
T ss_dssp EEEEEHHHHHHHHHHHHHHHCTEEEEEEEEEEE------TT-EEEEEEEEEESEEEESSEEEEECCHHH-HHHHHHHHHC
T ss_pred EEEECHHHHHHHHHHHhcCCCCEEEEEEEEEec------CceEEEEEEEEEeeEecCccccccchhhHH-HHHHhhhccc
Confidence 478999999999999999888899999999873 44 899999999998754321 12122 4455555332
Q ss_pred -CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy10969 78 -NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP 114 (204)
Q Consensus 78 -~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~ 114 (204)
..+.||||||...... ..|+ +.-..+-...++..+
T Consensus 78 ~~~~~iVGWY~s~p~~~-~~~S-~~di~~q~~~q~~~~ 113 (114)
T PF01398_consen 78 NPNLEIVGWYHSHPNIS-CFPS-PTDIETQKQYQRMNP 113 (114)
T ss_dssp STTSEEEEEEEEESSS--SS---HHHHHHHHHHHHHTT
T ss_pred cccceEEEEEEccCCcc-ccCC-HHHHHHHHHHHHhCC
Confidence 4599999999876554 3577 777777777766554
No 10
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=98.71 E-value=1.2e-06 Score=73.72 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=84.5
Q ss_pred ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCc----ccchhHHHHHHHHHHHHhhhC
Q psy10969 3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLC----LQVTPMIEIALTQISSYAQSN 78 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~----l~LsPmlEvAL~qvd~y~~~~ 78 (204)
.|+||..|..||+.||-.-. ..|+|+|+|... ..+..+.|+++.|.-=.. ....|.-+ ..+..++++.
T Consensus 6 ~V~Is~~all~m~~Ha~~~~-~EvcGlL~G~~d----~~~~~l~Vt~~~p~~~~~~~~~~e~dp~~q---~e~~~~l~~~ 77 (187)
T cd08067 6 KVTVSSNALLLMDFHCHLTT-SEVIGYLGGTWD----PNTQNLTILQAFPCRSRLTGLDCEMDPVSE---TEIRESLESR 77 (187)
T ss_pred EEEECHHHHHHHHHHhcCCC-cEEEEEEEeEEc----CCCCeEEEEEEEecCCCCCCcccccCHHHH---HHHHHHHHHc
Confidence 48899999999999999988 999999999852 234678999999976422 12344433 3455667899
Q ss_pred CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC-------CcEEEEEeCccccccccCccEEEEEecC
Q psy10969 79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP-------AACLIVLDNRKLTQTMQESALIVAQNSD 142 (204)
Q Consensus 79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~-------~a~ll~iDn~kl~~~~~~~~l~~~~~~~ 142 (204)
|+.+||+||...... ..|| ..-..---.-+..++ ..+.++++-..-........+..|....
T Consensus 78 gl~vVGwYHSHP~~~-~~pS-~~Di~tQ~~yQ~~~~~~~~~~~p~v~~I~~P~~~~~~~~~s~i~~f~~~~ 146 (187)
T cd08067 78 GLSVVGWYHSHPTFP-PNPS-LRDIDTQLDYQIMFKGSDSGYEPCVGLICSPYDRRNSTPESQITCFWVMP 146 (187)
T ss_pred CCEEEEEEecCCCCC-cCCC-HHHHHHHHHHHhhccccccCCCCeEEEEEccccCCCCCCCCcEEEEEEEC
Confidence 999999999987666 5677 532222222333333 2466676543222112233455555544
No 11
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8. This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.
Probab=98.67 E-value=5.6e-07 Score=79.87 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=89.1
Q ss_pred ceeecHHHHHHHHhhhhcCC---CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh-----HHHHHHHHHHHH
Q psy10969 3 EISFTDRAYCKMILHAVKYP---HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP-----MIEIALTQISSY 74 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP---~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP-----mlEvAL~qvd~y 74 (204)
+|.|.+.+..||+=|+.+.+ ...|.|+|||.. .++.++|+||.|+-|....-.| -.+-.-.+.+.+
T Consensus 2 ~V~ihplVLl~I~dh~~R~~~~~~~~ViG~LLG~~------~~~~veItnsF~~p~~~~~~~~~~~~~d~~y~~~m~~~~ 75 (280)
T cd08062 2 KVVVHPLVLLSVVDHYNRVAKGTSKRVVGVLLGSW------KKGVLDVTNSFAVPFEEDEKDPSVWFLDHNYLENMYGMF 75 (280)
T ss_pred eEEEehHHHHHHHHHHhhhcCCCCceEEEEEEEEE------eCCEEEEEEeeecCccCCCCCcchhhhhHHHHHHHHHHH
Confidence 58899999999999999875 456999999987 3468999999999986533333 123333445544
Q ss_pred hhh-CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 75 AQS-NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 75 ~~~-~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
-+- .+..+||||+....++ +....|-+-+.+.++++++++||-.. ..+..++.+|...
T Consensus 76 kkv~~~e~vVGWY~tg~~~~------~~d~~ih~~~~~~~~~pv~l~vd~~~---~~~~lpi~aY~s~ 134 (280)
T cd08062 76 KKVNAKEKIVGWYSTGPKLR------PNDLDINELFRRYCPNPVLVIIDVRP---KDLGLPTEAYIAV 134 (280)
T ss_pred HHhCCCCCeEEEecCCCCCC------cchHHHHHHHHHhCCCCEEEEEecCC---CCCCCceEEEEEe
Confidence 332 5599999999875543 34446667777778889999998433 2344678888775
No 12
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=98.44 E-value=3e-06 Score=74.35 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=86.4
Q ss_pred eeecHHHHHHHHhhhhc--CCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhH--HHHHHHHHHHHhh-hC
Q psy10969 4 ISFTDRAYCKMILHAVK--YPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPM--IEIALTQISSYAQ-SN 78 (204)
Q Consensus 4 v~is~~AY~K~iLHAaK--yP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPm--lEvAL~qvd~y~~-~~ 78 (204)
|.|.+.+..||+=|+.+ .....|.|.|||.. .++.++|+||.|+=|....-... .|-...+.+.|-+ ..
T Consensus 1 v~ihPlVll~I~dH~~R~~~~~~~V~G~LLG~~------~~~~veItnsF~~p~~~~~~~~~~d~~y~~~m~~~~kkv~~ 74 (265)
T cd08064 1 VRVHPVVLFSILDSYERRNEGQERVIGTLLGTR------SEGEVEITNCFAVPHNESEDQVAVDMEYHRTMYELHQKVNP 74 (265)
T ss_pred CEEccHHHHhHHHHHhhhcCCCcEEEEEEEEEE------eCCEEEEEeCeecceeCCCCeEEEcHHHHHHHHHHHHHhCC
Confidence 57899999999999887 33478999999987 34689999999999854221111 2233445554432 36
Q ss_pred CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC--CcEEEEEeCccccccccCccEEEEEec
Q psy10969 79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP--AACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~--~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
+..+||||++... ++ +....|-+.+++.++ +++++.+|-..-. +..++.+|...
T Consensus 75 ~~~vVGWY~tg~~-----~~-~~~~~Ih~~~~~~~~~~~pI~L~~D~~~~~---~~l~i~ay~~~ 130 (265)
T cd08064 75 KEVIVGWYATGSE-----IT-EHSALIHDYYSRECTSYNPIHLTVDTSLDD---GKMSIKAYVSS 130 (265)
T ss_pred CCcEEeeeeCCCC-----CC-ccHHHHHHHHHhhCCCCCCEEEEEeCCCCC---CCcceEEEEEE
Confidence 6899999998753 44 455567777877777 8899998864322 24677888764
No 13
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=98.39 E-value=9.5e-06 Score=62.70 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=69.5
Q ss_pred HHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeC
Q psy10969 10 AYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLAN 89 (204)
Q Consensus 10 AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~An 89 (204)
|..||+-||.+-....|+|+|+|....+ ......+.|+++.|.-... .|. | ..++.......|+.+||+||+.
T Consensus 2 ~~~~i~~ha~~~~p~E~cGlL~G~~~~~-~~~~~~~~v~~~~p~~~~~---~~~-~--~~~~~~~~~~~g~~~vG~YHSH 74 (119)
T cd08058 2 ALLKMLQHAESNTGIEVMGLLCGELTHN-EFTDKHVIVPKQSAGPDSC---TGE-N--VEELFNVQTGRPLLVVGWYHSH 74 (119)
T ss_pred HHHHHHHHhcCCCCeEEEEEeeeEEecC-ccceeEEEEeecCCCCCCc---hhH-H--HHHHHHHHhCCCCeEEEEEecC
Confidence 6789999999987788999999975210 0113457788888864422 232 2 2233344578999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcc
Q psy10969 90 ENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRK 125 (204)
Q Consensus 90 e~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~k 125 (204)
.... ..|| +.-.+.-..-+...|+++.|++|-.+
T Consensus 75 P~~~-~~pS-~~Di~~~~~~q~~~p~~~~lI~s~~~ 108 (119)
T cd08058 75 PTFT-AWLS-SVDIHTQASYQLMLPEAIAIVVSPKH 108 (119)
T ss_pred CCCC-CccC-HHHHHHHHHHhccCCCeEEEEECcCC
Confidence 6555 3566 44333222223345888888887654
No 14
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6. CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav
Probab=98.36 E-value=5.5e-06 Score=73.59 Aligned_cols=127 Identities=13% Similarity=0.166 Sum_probs=91.1
Q ss_pred ceeecHHHHHHHHhhhhcCC------CCceeEEEeeeecCCCCCCCCceEEEeceecccCccc---chhHHHHHHHHHHH
Q psy10969 3 EISFTDRAYCKMILHAVKYP------HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ---VTPMIEIALTQISS 73 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP------~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~---LsPmlEvAL~qvd~ 73 (204)
+|.+.+.+..+|.=|..+.. ...|.|.|||.. .|+.|+|++|.|+-|..-. ...=.|--..+.+.
T Consensus 2 ~V~lHPlVll~I~dH~~R~~~~~~~~~~~v~G~LLG~~------~~~~veItnsF~~p~~~~~~~~~~id~~y~~~m~~~ 75 (288)
T cd08063 2 SVKLHPLVILNISDHITRHRAQSQSEPPRVVGALLGQQ------DGREIEIENSFELKYDTNEDGEIVLDKEFLETRLEQ 75 (288)
T ss_pred eEEEecceeeeHHhhHhHHhccCCCCCCcEEEEEEEEE------cCCEEEEEEEEecccccCCCCceeeCHHHHHHHHHH
Confidence 47888999999999999842 378999999976 4568999999999995422 11113334445555
Q ss_pred Hhh-hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 74 YAQ-SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 74 y~~-~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
|-+ -.++.|||||+.... ++. +....|-+.+.+.+++++++++|-..-. ..+..++.+|...
T Consensus 76 ~kkV~~~~~vVGWY~tg~~----~~~-~~~~~Ih~~~~~~~~~pv~L~~D~~~~~-~~~~lpi~ay~s~ 138 (288)
T cd08063 76 FKQVFKDLDFVGWYTTGPG----GPT-ESDLPIHKQILEINESPVLLLLDPEANA-SGKDLPVTIYESV 138 (288)
T ss_pred HHHhccCCceEEEEecCCC----CCC-HHHHHHHHHHHhhCCCcEEEEEcccccc-CCCCCceeEEEEE
Confidence 433 256999999998644 466 7777888888888888999999865531 2345678888654
No 15
>PLN03246 26S proteasome regulatory subunit; Provisional
Probab=98.33 E-value=1.4e-05 Score=71.79 Aligned_cols=124 Identities=10% Similarity=0.160 Sum_probs=88.2
Q ss_pred ceeecHHHHHHHHhhhhcCCC---CceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh---H--HHHHHHHHHHH
Q psy10969 3 EISFTDRAYCKMILHAVKYPH---CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP---M--IEIALTQISSY 74 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP~---~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP---m--lEvAL~qvd~y 74 (204)
.|.+.+.+..+|+=|.-+... ..|.|.|||.. .++.++|++|.|+-|..-.=.+ . .+-...+.+.+
T Consensus 7 ~V~vhPlVll~I~dh~~R~~~~~~~rviG~LLG~~------~~~~ieItnsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~ 80 (303)
T PLN03246 7 KVVVHPLVLLSIVDHYNRVAKDTRKRVVGVLLGSS------FRGRVDVTNSFAVPFEEDDKDPSIWFLDHNYLESMFGMF 80 (303)
T ss_pred EEEECcHHHHHHHHHHHhccCCCCCeeEEEEEeee------cCCEEEEEeccccCcccCCCCccceeecHHHHHHHHHHH
Confidence 488999999999999988874 45999999987 3458999999999985421111 0 23344555555
Q ss_pred hh-hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 75 AQ-SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 75 ~~-~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
-+ -.+..+||||+....+ + +....|-+-+.+.+++++++.||-.. ..+..++.+|...
T Consensus 81 k~V~~~~~vVGWY~tg~~i-----~-~~d~~IH~~~~~~~~~Pv~L~vD~~~---~~~~lpi~aY~s~ 139 (303)
T PLN03246 81 KRINAKEHVVGWYSTGPKL-----R-ENDLDIHELFNDYVPNPVLVIIDVQP---KELGIPTKAYYAV 139 (303)
T ss_pred HHhCCCCcEEeeecCCCCC-----C-cchHHHHHHHHhhCCCCeEEEEecCC---CCCCCceEEEEEE
Confidence 33 2568999999976443 3 44566777888888999999997322 2344678888754
No 16
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=98.20 E-value=0.0001 Score=64.53 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=84.2
Q ss_pred CceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCC-CCCCCceEEEeceecccC-----cccchhHHHH-HHHHHHHH
Q psy10969 2 SEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTT-KESPKKLTYVDAIPLFHL-----CLQVTPMIEI-ALTQISSY 74 (204)
Q Consensus 2 ~~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~-~~~~~~v~i~DaVPLfH~-----~l~LsPmlEv-AL~qvd~y 74 (204)
.+|.|+..+|.||+.||..==-..|+|+|+|+...++ ...+..+.+...+|+-.. ...+.|.-.+ |..+++.+
T Consensus 2 ~~V~Is~~~l~~il~HA~~~~P~EvCGLL~G~~~~~~~~~~~~~v~i~~~~~~~~~~~s~~r~eidPee~~~a~~ea~~~ 81 (244)
T cd08068 2 SKVHLSADVYLVCLTHALSTEKEEVMGLLIGEIEVSKKGEEVAIVHISAVIILRRSDKRKDRVEISPEQLSAASTEAERL 81 (244)
T ss_pred cEEEECHHHHHHHHHHHHhCCCcceeEEEEeecccccccccceeEEEeeeccccccCCCCceEEeCHHHHHHHHHHHHHH
Confidence 4689999999999999998645899999999751000 012345656677776432 1355676433 44455544
Q ss_pred hhh--CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEe--CccccccccCccEEEEEecCC
Q psy10969 75 AQS--NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLD--NRKLTQTMQESALIVAQNSDG 143 (204)
Q Consensus 75 ~~~--~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iD--n~kl~~~~~~~~l~~~~~~~~ 143 (204)
.+. .|+.|||+||...... .-|| ..-.+-...-....|..+-+.++ +..-....+.+.+..|...++
T Consensus 82 ~~~~~rgl~vVGwYHSHP~~~-a~PS-~~Dv~tq~~~q~~~p~~v~lIvS~~~~~~~~~~~~~~i~aFr~~~g 152 (244)
T cd08068 82 TEETGRPMRVVGWYHSHPHIT-VWPS-HVDVRTQAMYQMMDSGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQG 152 (244)
T ss_pred HhhccCCceEEEEEecCCCCC-CCCC-HhHHHHHHHHHhhCCCcEEEEEEecCCccccccCCEEEEEEEecCC
Confidence 443 7899999999987655 3566 55444222222234666655553 211121234566777777654
No 17
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al
Probab=98.11 E-value=0.00013 Score=60.61 Aligned_cols=125 Identities=10% Similarity=0.047 Sum_probs=84.3
Q ss_pred eeecHHHHHHHHhhhhcC-C-CCceeEEEeeeecCCCCCCCCceEEEeceecccCccc--chhHHHHHHHHHHHHhhhCC
Q psy10969 4 ISFTDRAYCKMILHAVKY-P-HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ--VTPMIEIALTQISSYAQSNG 79 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKy-P-~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~--LsPmlEvAL~qvd~y~~~~~ 79 (204)
+.|+...|-|++-||-.- | -..|+|+|.|+. .++...|++.+..-..... ..++-+ .++..++...|
T Consensus 4 l~Ipk~il~~~l~~A~~~~~~p~E~cGlL~G~~------~~~~~~I~~i~~~~q~~~~~~~~~~~~---~e~~~~~~~~g 74 (173)
T cd08066 4 VVVPADLMDKFLQLAEPNTSRNLETCGILCGKL------SNNAFFITHLIIPKQSGTSDSCQTTNE---EELFDFQDQHD 74 (173)
T ss_pred EEECHHHHHHHHHHHHhCCCCCCeEEEEEEeEc------CCCeEEEEEEEeccccCCCceecCCCH---HHHHHHHHhCC
Confidence 789999999999999875 3 478999999975 2234566666322111111 111111 12445678899
Q ss_pred ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec--C-Ccee
Q psy10969 80 LVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS--D-GKWK 146 (204)
Q Consensus 80 l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~--~-~~W~ 146 (204)
+.++|+||.... ....|| +.-.+.--+.....|+++.++++- ..+.+..|... . -.|.
T Consensus 75 le~vGwyHSHP~-~~~~pS-~~Dv~t~~~~~~~~p~~~~lIvSp-------~~~~l~afrl~~~~g~~~~ 135 (173)
T cd08066 75 LITLGWIHTHPT-QTCFLS-SVDLHTHCSYQLMLPEAIAIVCAP-------KYNEFGIFRLTDPPGLDEI 135 (173)
T ss_pred CeeEEEEeccCC-CCCccC-HHHHHHHHHHHhcCCCeEEEEECC-------CCcEEeEEEeecCCcceec
Confidence 999999998644 334688 777776667777789999888863 24667777776 2 3784
No 18
>KOG1554|consensus
Probab=97.67 E-value=0.00039 Score=62.18 Aligned_cols=111 Identities=18% Similarity=0.275 Sum_probs=74.6
Q ss_pred ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEece--ecccCcccchhHHHHHHHHHHHH---hhh
Q psy10969 3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAI--PLFHLCLQVTPMIEIALTQISSY---AQS 77 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaV--PLfH~~l~LsPmlEvAL~qvd~y---~~~ 77 (204)
.|.||..|..||+.||-.=-.-.|-|++.|+. .|.+++|-||. |.-=+-+-.--- +-|.+-.-+| |+.
T Consensus 54 ~vkISalAllKm~~hA~~GgnlEiMGlm~Gkv------~g~t~IvmD~FaLPVeGTETRVNAq-~~AyEYmv~Y~e~~k~ 126 (347)
T KOG1554|consen 54 HVKISALALLKMVMHARSGGNLEIMGLMQGKV------DGDTIIVMDSFALPVEGTETRVNAQ-AEAYEYMVQYIEEAKN 126 (347)
T ss_pred hhhhHHHHHHHHHHHHhcCCCeEEEeeecccc------cCCeEEEEeccccccccccceechH-HHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999986 57789999987 444333322211 1222222222 344
Q ss_pred CC--ceEEEEEEeCCCCC--CCCCCHHHHHHHHHHHHhhCCCc-EEEEEeCcc
Q psy10969 78 NG--LVIAGYYLANENIK--DVSYDKPYQSRIADKIAEFFPAA-CLIVLDNRK 125 (204)
Q Consensus 78 ~~--l~IvGyY~Ane~~~--d~~~~~~~a~kIadkI~~~~~~a-~ll~iDn~k 125 (204)
-| ..+|||||.....+ =+..+ -...++...|.+. +.++||-.+
T Consensus 127 ~gr~envVGWyHSHPgYgCWLSgID-----VsTQ~lNQ~fQePfvAvViDP~R 174 (347)
T KOG1554|consen 127 VGRLENVVGWYHSHPGYGCWLSGID-----VSTQMLNQRFQEPFVAVVIDPTR 174 (347)
T ss_pred hhhhhceeeeeecCCCCCccccCcc-----hhHHHHhhhhcCCeEEEEecCcc
Confidence 44 77999999987655 12344 1234556667775 568888744
No 19
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=97.55 E-value=0.0032 Score=49.04 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=70.2
Q ss_pred HHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecc--cCc----ccchhHHHHHHHHHHHHhhhCCceE
Q psy10969 9 RAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLF--HLC----LQVTPMIEIALTQISSYAQSNGLVI 82 (204)
Q Consensus 9 ~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLf--H~~----l~LsPmlEvAL~qvd~y~~~~~l~I 82 (204)
..+-+|+-||.+-.-..++|+|+|+. .+....|++.+|+= +.. ..+.|. .+..+...+++.|+.+
T Consensus 2 ~~~~~il~ha~~~~P~E~cGlL~G~~------~~~~~~i~~~~p~~n~~~~~~~~f~~d~~---~~~~~~~~~~~~g~~~ 72 (128)
T cd08070 2 ELLEAILAHAEAEYPEECCGLLLGKG------GGVTAIVTEVYPVRNVAESPRRRFEIDPA---EQLAAQREARERGLEV 72 (128)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeec------CCCCceEEEEEEccCCCCCCCceEEECHH---HHHHHHHHHHHCCCeE
Confidence 35779999999955688999999986 23344568888872 221 133443 3346666778899999
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCC
Q psy10969 83 AGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDG 143 (204)
Q Consensus 83 vGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~ 143 (204)
||.||...... ..|| ..-. -.-..+....+.+.. ....+.+..|..+++
T Consensus 73 vG~~HSHP~~~-~~PS-~~D~-----~~~~~~~~~~lIv~~-----~~~~~~~~~~~~~~~ 121 (128)
T cd08070 73 VGIYHSHPDGP-ARPS-ETDL-----RLAWPPGVSYLIVSL-----AGGAPELRAWRLEGG 121 (128)
T ss_pred EEEEeCCCCCC-CCCC-HHHH-----HhccCCCCeEEEEEC-----CCCCcEEEEEEEcCC
Confidence 99999986643 3566 3322 222233344444321 112356677766654
No 20
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A.
Probab=96.55 E-value=0.0093 Score=44.10 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHH-HhhhCCceEEEEE
Q psy10969 8 DRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISS-YAQSNGLVIAGYY 86 (204)
Q Consensus 8 ~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~-y~~~~~l~IvGyY 86 (204)
.++|.+|+-|+...+....+|+|+|+. .++...+++.++ ..|--+++. .. .....|+.++|.|
T Consensus 2 ~~~~~~i~~~~~~~~p~E~~G~L~g~~------~~~~~~~~~~~~-------~~p~~~~~~---~~~~~~~~~~~~vg~~ 65 (104)
T PF14464_consen 2 EEVLEQIIAHARAAYPNEACGLLLGRR------DDQRFIVVPNVN-------PDPRDSFRR---ERFEARERGLEIVGIW 65 (104)
T ss_dssp -HHHHHHHHHHHHHTTS-EEEEEEEEE------ECCEEEEEEEEE---------HHCHHHH---HH-HHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHhhCCCCeEEEEEEEEe------cCCEEEEEeCCC-------CCcHHHHHH---HhhhhhcccceeeEEE
Confidence 468899999999988899999999986 245677788777 223322222 22 5678999999999
Q ss_pred EeCCCCCCCCCC
Q psy10969 87 LANENIKDVSYD 98 (204)
Q Consensus 87 ~Ane~~~d~~~~ 98 (204)
|....... .||
T Consensus 66 HSHP~~~a-~pS 76 (104)
T PF14464_consen 66 HSHPSGPA-FPS 76 (104)
T ss_dssp EEESSSSS-S--
T ss_pred EcCCCCCC-CCC
Confidence 99765553 566
No 21
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme. This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=96.47 E-value=0.07 Score=41.35 Aligned_cols=108 Identities=6% Similarity=-0.068 Sum_probs=62.5
Q ss_pred ecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhH--HHHHHHHHHHHhhhCCceEE
Q psy10969 6 FTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPM--IEIALTQISSYAQSNGLVIA 83 (204)
Q Consensus 6 is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPm--lEvAL~qvd~y~~~~~l~Iv 83 (204)
|+...+-.|+-||.+-.-..++|+|+|+. + .|++..|+==..-. .+. +++ .....|+.|+
T Consensus 1 i~~~~~~~i~~ha~~~~P~E~CGlL~G~~-------~---~v~~~~~~~n~~~~-~~~~~f~~-------~~~~~g~~iv 62 (117)
T cd08072 1 ISRDLLDSILEAAKSSHPNEFAALLRGKD-------G---VITELLILPGTESG-EVSAVFPL-------LMLPLDMSIV 62 (117)
T ss_pred CCHHHHHHHHHHHhhcCCceEEEEEEeec-------c---EEEEEEECCCCCCC-Ccceeech-------HHhcCCCeEE
Confidence 45678899999999655578889999965 1 45666654311110 111 111 1346899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCC
Q psy10969 84 GYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDG 143 (204)
Q Consensus 84 GyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~ 143 (204)
|.||....- ...|| +.-.+. ...+++.-+.+ +...+.+.+..|..+++
T Consensus 63 gi~HSHP~~-~~~PS-~~D~~~-----~~~~~~~~lIv-----s~~~~~~~~~a~~~~g~ 110 (117)
T cd08072 63 GSVHSHPSG-SPRPS-DADLSF-----FSKTGLVHIIV-----GYPYDEDDWRAYDSDGE 110 (117)
T ss_pred EEEEcCCCC-CCCCC-HHHHHh-----hhcCCCEEEEE-----ECcCCCCCEEEEecCCC
Confidence 999987543 34577 433222 23355554443 11113356677766654
No 22
>KOG1556|consensus
Probab=95.92 E-value=0.15 Score=45.08 Aligned_cols=112 Identities=15% Similarity=0.236 Sum_probs=69.3
Q ss_pred eeecHHHHHHHHhhh---hcCCCCceeEEEeeeecCCCCCCCCceEEEe--ceecccC------cccchhHHHHHHHHHH
Q psy10969 4 ISFTDRAYCKMILHA---VKYPHCSINGVLLAVTVPTTKESPKKLTYVD--AIPLFHL------CLQVTPMIEIALTQIS 72 (204)
Q Consensus 4 v~is~~AY~K~iLHA---aKyP~~aVnGvLlg~~~~~~~~~~~~v~i~D--aVPLfH~------~l~LsPmlEvAL~qvd 72 (204)
|.+.+.-..-.+=|- +|--...|-|||||.. .++.+-|+. |||.=-- |.-=.-.+|--..+..
T Consensus 11 ViVhPLVLLS~VDhynR~~k~~~KRvvGvLLG~~------~~~~i~vtnSfAvpFeEDdk~~svWFlDh~Y~esM~~mfk 84 (309)
T KOG1556|consen 11 VIVHPLVLLSAVDHYNRVGKDTNKRVVGVLLGSW------NGDVIDVTNSFAVPFEEDDKDKSVWFLDHNYIESMFGMFK 84 (309)
T ss_pred eeeehhHHHHHHHHHhhhccCcCceEEEEEEecC------CCCeEEeecceeccccccCCCCceEEeccHHHHHHHHHHH
Confidence 445555555555453 3444488999999975 344666665 4553211 1111223332222222
Q ss_pred HHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccccc
Q psy10969 73 SYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQT 129 (204)
Q Consensus 73 ~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~ 129 (204)
. -..+..||||||...++..+.+. |-+-+.+++|+.+|+.||-+.-+.+
T Consensus 85 K--vNakekivGWYhTGPkl~~nDl~------In~l~k~y~pnpvLvIIdvkpk~~g 133 (309)
T KOG1556|consen 85 K--VNAKEKVVGWYHTGPKLRENDLD------INELLKRYVPNPVLVIIDVKPKELG 133 (309)
T ss_pred H--hcchhheeeeeccCCccccchhh------HHHHHhhcCCCceEEEEecccccCC
Confidence 1 12458899999998888876665 7788889999999999998766543
No 23
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]
Probab=94.19 E-value=0.23 Score=38.87 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=54.4
Q ss_pred eeecHHHHHHHHhhhhcC-CCCceeEEEeeeecCCCCC-CCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCce
Q psy10969 4 ISFTDRAYCKMILHAVKY-PHCSINGVLLAVTVPTTKE-SPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLV 81 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKy-P~~aVnGvLlg~~~~~~~~-~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~ 81 (204)
..++....-+|+-||.+= | ..|+|+|.|+.. + .-..+..++.-|..+. ...||..+ ....+...|+.
T Consensus 2 ~~i~~~~l~~il~~a~~~~p-~E~~g~l~~~~~----~~~~~~~~n~~~~~~~~~--~~~~~~~~----~~~~~~~~g~~ 70 (134)
T COG1310 2 LVIPKEVLGAILEHARREHP-REVCGLLAGTRE----GERYFPLKNVSVEPVEYF--EIDPEYSL----FYLAAEDAGEV 70 (134)
T ss_pred ceecHHHHHHHHHHHHhcCC-hheEEEEEeecc----cceeeccccccCCcceeE--eeCHHHHH----HHHHHhhCCCE
Confidence 357788888899998765 6 999999999862 1 0012334444454443 34566554 33345788999
Q ss_pred EEEEEEeCCCCCCCCCC
Q psy10969 82 IAGYYLANENIKDVSYD 98 (204)
Q Consensus 82 IvGyY~Ane~~~d~~~~ 98 (204)
+||.||...... ..||
T Consensus 71 vvg~yHSHP~~~-~~pS 86 (134)
T COG1310 71 VVGWYHSHPGGP-PYPS 86 (134)
T ss_pred EEEEEcCCCCCC-CCcC
Confidence 999999876544 3455
No 24
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=92.39 E-value=1.3 Score=32.79 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeCC
Q psy10969 11 YCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANE 90 (204)
Q Consensus 11 Y~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~Ane 90 (204)
|-.|.-|+.+-....++|+|+|+. ++ .+....|+.=.....+|.- ...+...|..+||.||...
T Consensus 3 ~~~i~~~~~~~~p~E~~gll~~~~------~~---~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~v~i~HsHP 66 (101)
T cd08059 3 LKTILVHAKDAHPDEFCGFLSGSK------DN---VMDELIFLPFVSGSVSAVI-------DLAALEIGMKVVGLVHSHP 66 (101)
T ss_pred HHHHHHHHHhcCChhhheeeecCC------CC---eEEEEEeCCCcCCccChHH-------HHHHhhCCCcEEEEEecCc
Confidence 456677777774467889999965 12 4455666664444556653 5667889999999999875
Q ss_pred CCCCCCCCHHHHHHHHHH
Q psy10969 91 NIKDVSYDKPYQSRIADK 108 (204)
Q Consensus 91 ~~~d~~~~~~~a~kIadk 108 (204)
. .+..|| ..=.+.+.+
T Consensus 67 ~-g~~~PS-~~D~~~~~~ 82 (101)
T cd08059 67 S-GSCRPS-EADLSLFTR 82 (101)
T ss_pred C-CCCCCC-HHHHHHHHh
Confidence 4 345677 554444443
No 25
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family. This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.
Probab=92.34 E-value=1.7 Score=34.72 Aligned_cols=89 Identities=12% Similarity=-0.013 Sum_probs=56.3
Q ss_pred CceeEEEeeeecCCCCCCCCceEEEeceecccCc----ccchhHHHHHHHHHHHHhh-hCC-ceEEEEEEeCCCCCCCCC
Q psy10969 24 CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLC----LQVTPMIEIALTQISSYAQ-SNG-LVIAGYYLANENIKDVSY 97 (204)
Q Consensus 24 ~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~----l~LsPmlEvAL~qvd~y~~-~~~-l~IvGyY~Ane~~~d~~~ 97 (204)
..-.|+|+|+.. ++.+.|+|+.+=-... ...-+=-+-.-.+++.+.+ ++| +.-+|-+|....... .|
T Consensus 17 ~EtGGiLiG~~~------~~~~ii~~~t~P~p~d~~tr~~F~r~~~~~q~~i~~~~~~s~g~~~ylGeWHtHP~~~p-~P 89 (131)
T TIGR02256 17 TETGGVLIGERR------GAHAVITKISEPGSGDIRTRKRFSRDGEHHQSEVDEHFEVSGGVDTYLGEWHTHPEDQP-EP 89 (131)
T ss_pred CccceEEEEEEc------CCcEEEEEEEcCCCCcccCceEEEeCcHHHHHHHHHHHHHhCCceEEEEecCcCCCCCC-CC
Confidence 478999999872 4478889888422221 1222222222345555544 444 889999998766554 68
Q ss_pred CHHHHHHHHHHHHhhCCCcEEEEE
Q psy10969 98 DKPYQSRIADKIAEFFPAACLIVL 121 (204)
Q Consensus 98 ~~~~a~kIadkI~~~~~~a~ll~i 121 (204)
| ..-.+-..++.+... +.+++|
T Consensus 90 S-~~D~~~~~~~~~~~~-~~l~iI 111 (131)
T TIGR02256 90 S-WTDRRSWRTIIRSPE-AMLLLI 111 (131)
T ss_pred C-HHHHHHHHHHHhCCC-eeEEEE
Confidence 8 888888888887643 343333
No 26
>KOG1555|consensus
Probab=92.23 E-value=0.52 Score=42.92 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=62.9
Q ss_pred eeecHHHHHHHHhhh-hcCCCCceeEEE-eeeecCCCCCCCCceEEEe---ceecccCcccchhHHHHHH-HHHHHHhhh
Q psy10969 4 ISFTDRAYCKMILHA-VKYPHCSINGVL-LAVTVPTTKESPKKLTYVD---AIPLFHLCLQVTPMIEIAL-TQISSYAQS 77 (204)
Q Consensus 4 v~is~~AY~K~iLHA-aKyP~~aVnGvL-lg~~~~~~~~~~~~v~i~D---aVPLfH~~l~LsPmlEvAL-~qvd~y~~~ 77 (204)
+.++..|-.||..|+ ++=|...|.|++ +|+... =-..-++.++| .-+-+=....+.|-+.-.. +|.....+.
T Consensus 33 v~i~slall~m~rh~r~~~p~e~v~Glm~lg~~~~--fv~~~Tv~vv~v~am~~sg~~is~~~e~~d~V~q~q~~~~l~~ 110 (316)
T KOG1555|consen 33 VYISSLALLKMLRHDRAGSPEETVMGLMSLGRLPE--FVDDYTVRVVDVFAMPQSGTGISKFVEAVDPVFQTQMMDLLKQ 110 (316)
T ss_pred eeeehhhhhhcccccccCCchhhccceeecccccc--eeeecceeeeeeeccccccceecccchhccHHHHHHHHHHHHh
Confidence 789999999999997 577777799999 993200 00112233333 2222211111123332222 455555566
Q ss_pred CC--ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEe
Q psy10969 78 NG--LVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLD 122 (204)
Q Consensus 78 ~~--l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iD 122 (204)
.| +.+|||||....+.- .|| .+-..--..-+..++.|+..+||
T Consensus 111 tGrp~~VVGWYHSHP~f~~-wpS-~vDi~tQ~syq~~~~r~~a~~v~ 155 (316)
T KOG1555|consen 111 TGRPELVVGWYHSHPGFGC-WPS-LVDIDTQQSYQALSSRAVAVVVD 155 (316)
T ss_pred cCCcceEEeeccCCCCCCC-Ccc-ccchhHHHHHhhhccCCcceeee
Confidence 66 559999999888773 233 22222222223335666665554
No 27
>KOG2975|consensus
Probab=91.57 E-value=1.9 Score=38.56 Aligned_cols=121 Identities=14% Similarity=0.097 Sum_probs=80.5
Q ss_pred ecHHHHHHHHhhhhcCCC--CceeEEEeeeecCCCCCCCCceEEEeceecccCcc--cchhHHHHHHHHHHHHhhh-CCc
Q psy10969 6 FTDRAYCKMILHAVKYPH--CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCL--QVTPMIEIALTQISSYAQS-NGL 80 (204)
Q Consensus 6 is~~AY~K~iLHAaKyP~--~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l--~LsPmlEvAL~qvd~y~~~-~~l 80 (204)
+.+.-|.-++=|--+.|. ..|.|-|||+. +++.|+|+.|.-.=|--. .+.-=+|-|..+.+.+-+. .+-
T Consensus 25 ihP~Vlf~ivD~~~RR~~~~~rviGTLLG~~------~~g~ieitNCFaVPhnEssdqvevdm~y~~~M~~l~~k~npnE 98 (288)
T KOG2975|consen 25 LHPVVLFSIVDAYERRNKGAERVIGTLLGTV------DKGSVEVTNCFAVPHNESSDQVEVDMEYAKNMYELHKKVNPNE 98 (288)
T ss_pred EcceEEeEeehhhhcCCccchhhhhheeecc------cCCeEEEEEeeeccCccccccceeeHHHHHHHHHHhcccCCCc
Confidence 334444444444445554 56999999987 345799999876666542 4555567788888887664 569
Q ss_pred eEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 81 VIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 81 ~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
.|||||--. .+++ ..+.-|-|--++.+++.+-+.||-.-- .++-++..|-..
T Consensus 99 ~vvGWyaTg-----~dvt-~~sslihdyYare~~~pvhLtVDT~~~---n~rm~ikaYvss 150 (288)
T KOG2975|consen 99 LVVGWYATG-----HDVT-EHSSLIHDYYAREAPNPVHLTVDTSLQ---NGRMSIKAYVSS 150 (288)
T ss_pred eeEEEEecC-----CCcc-cchhHHHHHhhccCCCCeEEEEecccc---CCccceeEEEEe
Confidence 999999854 2355 556678888888899988888874211 233345555444
No 28
>KOG1560|consensus
Probab=89.47 E-value=2.9 Score=37.85 Aligned_cols=129 Identities=17% Similarity=0.241 Sum_probs=79.7
Q ss_pred eeecHHHHHHHHhhhhcC-CC-CceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHH--------------
Q psy10969 4 ISFTDRAYCKMILHAVKY-PH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIA-------------- 67 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKy-P~-~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvA-------------- 67 (204)
|++...--.||+-|+--- |. ..+-|+|+|=. -++.++|+.|.|---. .||=+=|
T Consensus 15 v~ldsLvVMkiiKHc~ee~~n~d~~~GvL~Glv------vd~~LeITncFp~p~~----~~~edda~~~~~~de~rq~~~ 84 (339)
T KOG1560|consen 15 VELDSLVVMKIIKHCREEFPNGDGTQGVLLGLV------VDGRLEITNCFPFPSV----LENEDDAVNKSVSDEARQAYQ 84 (339)
T ss_pred eeehhHHHHHHHHHHHhhcCCcchhhheeeeee------ecceeEeecccCCCcc----CCCccchhhhhhhHHHHHHHH
Confidence 678888889999998654 33 68999999965 2458999999996532 1332222
Q ss_pred HHHHHHHhhh--CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec----
Q psy10969 68 LTQISSYAQS--NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS---- 141 (204)
Q Consensus 68 L~qvd~y~~~--~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~---- 141 (204)
|++.... +. -..-+||||+...-- +.++ +.--.--=.-+...|+.++++.|-.|-+. +.-.+..|...
T Consensus 85 l~mlrrl-r~vnid~~hVGwYqs~~vg--s~lS-~~lveSqy~YQ~a~pesVvliYD~~kssq--G~L~lrAyrLTp~am 158 (339)
T KOG1560|consen 85 LAMLRRL-RYVNIDHLHVGWYQSAYVG--SFLS-PALVESQYAYQKAIPESVVLIYDPIKSSQ--GTLSLRAYRLTPEAM 158 (339)
T ss_pred HHHHHHh-hhcCccceeeeeeeeehhc--cccC-HHHHHHHHHHHhcCCccEEEEeccccccC--ceEEeehhhcCHHHH
Confidence 1111111 11 345699999985322 2455 33222222334556788999999877763 34456666554
Q ss_pred ----CCceeec
Q psy10969 142 ----DGKWKPV 148 (204)
Q Consensus 142 ----~~~W~~~ 148 (204)
++.|++.
T Consensus 159 ~~~kekdwtpe 169 (339)
T KOG1560|consen 159 AAHKEKDWTPE 169 (339)
T ss_pred HHHhcCCCCHH
Confidence 3678763
No 29
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=82.49 E-value=5.4 Score=30.38 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred HHHHHHhhh-hcCCCCceeEEEeeeecCCCCCCCCceEEEeceecc---c---CcccchhHHHHHHHHHHHHhhhCCceE
Q psy10969 10 AYCKMILHA-VKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLF---H---LCLQVTPMIEIALTQISSYAQSNGLVI 82 (204)
Q Consensus 10 AY~K~iLHA-aKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLf---H---~~l~LsPmlEvAL~qvd~y~~~~~l~I 82 (204)
.|-.|+-|| ..|| ...+|+|+|+. + + +-.+|+= . ....+.|.-.++. .+.| .|
T Consensus 2 i~~~i~~ha~~~~P-~E~CGll~g~~-------~--~--~~~~p~~N~~~~p~~~F~idp~e~~~a-------~~~~-~i 61 (108)
T cd08073 2 LEDAILAHAKAEYP-REACGLVVRKG-------R--K--LRYIPCRNIAADPEEHFEISPEDYAAA-------EDEG-EI 61 (108)
T ss_pred HHHHHHHHHhHCCC-CcceEEEEecC-------C--c--eEEEECccCCCCccceEEeCHHHHHHH-------hcCC-CE
Confidence 356788899 6777 55669999954 1 1 2224442 1 1123455533332 1233 89
Q ss_pred EEEEEeCCCCCCCCCC
Q psy10969 83 AGYYLANENIKDVSYD 98 (204)
Q Consensus 83 vGyY~Ane~~~d~~~~ 98 (204)
+|.||..-. ....||
T Consensus 62 vgi~HSHP~-~~a~PS 76 (108)
T cd08073 62 VAVVHSHPD-GSPAPS 76 (108)
T ss_pred EEEEEcCCC-CCCCCC
Confidence 999999754 334577
No 30
>KOG3050|consensus
Probab=79.56 E-value=16 Score=32.59 Aligned_cols=102 Identities=13% Similarity=0.218 Sum_probs=54.4
Q ss_pred CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHH-----HHHHHHHHHhhh-CCceEEEEEEeCCCCCCCC
Q psy10969 23 HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIE-----IALTQISSYAQS-NGLVIAGYYLANENIKDVS 96 (204)
Q Consensus 23 ~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlE-----vAL~qvd~y~~~-~~l~IvGyY~Ane~~~d~~ 96 (204)
-..|.|.|||+. .|.+|+|-...-|.-.. .-|.| -=+.--|.|-+- ..+.++|||.+-+.-
T Consensus 36 ~~~VyGaliG~Q------~GR~vEi~NSFeL~~d~---~~~~~~~dke~l~kk~eqykqVFpdl~vlGwYttG~d~---- 102 (299)
T KOG3050|consen 36 VKQVYGALIGKQ------RGRNVEIMNSFELKMDT---EEDTETIDKEYLEKKEEQYKQVFPDLYVLGWYTTGSDP---- 102 (299)
T ss_pred HHHhhhhheecc------cCceEEEeeeeEEEecc---hhhhhhccHHHHHHHHHHHHHhcccceEEEEeecCCCC----
Confidence 348999999986 57789998887665332 12221 111111222221 679999999986433
Q ss_pred CCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 97 YDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 97 ~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
. |--..|-.+|.+-....+.+.++. ++...+..++.+|+..
T Consensus 103 -t-~sd~~i~k~l~~i~esplflkLNp--~t~~t~~~pv~lfese 143 (299)
T KOG3050|consen 103 -T-PSDIHIHKQLMDINESPLFLKLNP--ATNHTDKDPVTLFESE 143 (299)
T ss_pred -C-hhhhHHHHHHHhhhcCceEEEecc--hhccccCCCceeeeee
Confidence 2 333344444444334445555532 2223333355555443
No 31
>COG3933 Transcriptional antiterminator [Transcription]
Probab=53.21 E-value=56 Score=31.46 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhhcCCCC-ceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEE
Q psy10969 8 DRAYCKMILHAVKYPHC-SINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYY 86 (204)
Q Consensus 8 ~~AY~K~iLHAaKyP~~-aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY 86 (204)
..-|.-|++|.++.-+. +. +-+|=+-|+..+-|-|.|+|=.+.+. +.|
T Consensus 89 Ev~~Lal~l~~~~~~~~~~~---------------------v~vIiiAHG~sTASSmaevanrLL~~----------~~~ 137 (470)
T COG3933 89 EVLYLALFLHECRHYTQNPR---------------------VKVIIIAHGYSTASSMAEVANRLLGE----------EIF 137 (470)
T ss_pred HHHHHHHHHHHhhhcccCCc---------------------eeEEEEecCcchHHHHHHHHHHHhhc----------cce
Confidence 45678888888765432 22 23344568887889999999999984 467
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHHHhhCCCc-EEEEEeCcccc
Q psy10969 87 LANENIKDVSYDKPYQSRIADKIAEFFPAA-CLIVLDNRKLT 127 (204)
Q Consensus 87 ~Ane~~~d~~~~~~~a~kIadkI~~~~~~a-~ll~iDn~kl~ 127 (204)
+|=...=|.+|+ .+.+++.+++.++-+.. +++.+|-.-|+
T Consensus 138 ~aiDMPLdvsp~-~vle~l~e~~k~~~~~~GlllLVDMGSL~ 178 (470)
T COG3933 138 IAIDMPLDVSPS-DVLEKLKEYLKERDYRSGLLLLVDMGSLT 178 (470)
T ss_pred eeecCCCcCCHH-HHHHHHHHHHHhcCccCceEEEEecchHH
Confidence 777777788999 99999999999988775 88889965554
No 32
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=51.75 E-value=1.1e+02 Score=23.73 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=58.3
Q ss_pred HHHHHHhhhCCceEEEEEEeCCCCCCCCCC-HHHHHHHHHHHHhhCCC--cEEEEEeCcccc-------c-cccCccEEE
Q psy10969 69 TQISSYAQSNGLVIAGYYLANENIKDVSYD-KPYQSRIADKIAEFFPA--ACLIVLDNRKLT-------Q-TMQESALIV 137 (204)
Q Consensus 69 ~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~-~~~a~kIadkI~~~~~~--a~ll~iDn~kl~-------~-~~~~~~l~~ 137 (204)
.+.+..|..+++-|+++-- ...|.+.. ..-....-.++++.|.+ ..++++|..... . ..+-|++.+
T Consensus 11 ~~~~~~C~~~~~C~i~~l~---~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i 87 (130)
T cd02983 11 DVFEETCEEKQLCIIAFLP---HILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVA 87 (130)
T ss_pred HHHHhhccCCCeEEEEEcC---ccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEE
Confidence 4567789889999999932 22233333 12344566677777764 356778876642 1 234577888
Q ss_pred EEecCCceeeccCCccccccchHHHHHHHHhhcc
Q psy10969 138 AQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNI 171 (204)
Q Consensus 138 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (204)
+...++++..... -+..+...+.+.+++..+.
T Consensus 88 ~~~~~~KY~~~~~--~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 88 INFRKMKFATLKG--SFSEDGINEFLRELSYGRG 119 (130)
T ss_pred EecccCccccccC--ccCHHHHHHHHHHHHcCCc
Confidence 8776667753211 1222345567777777664
No 33
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=48.48 E-value=1.2e+02 Score=23.07 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q psy10969 64 IEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT 127 (204)
Q Consensus 64 lEvAL~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~ 127 (204)
+|-=...++.||.++|+.|++.|.-+. .+.....+|-=.++.+.+.+.--+ ++++-+=.+|.
T Consensus 17 ~~~Q~~~~~~~a~~~g~~i~~~~~d~~-~Sg~~~~Rp~l~~ll~~~~~g~~~-~ivv~~~~Rl~ 78 (148)
T smart00857 17 LERQLEALRAYAKANGWEVVRIYEDEG-VSGKKADRPGLQRLLADLRAGDID-VLVVYKLDRLG 78 (148)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCC-CcCCCCCCHHHHHHHHHHHcCCCC-EEEEeccchhh
Confidence 355556688999999999999998763 222223456667777777764222 44444444444
No 34
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=44.05 E-value=98 Score=24.33 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q psy10969 65 EIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT 127 (204)
Q Consensus 65 EvAL~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~ 127 (204)
|-=...++.||..+|..|+.+|.-. .+.....+|--.++.+.+.+. -++++-+=.+|.
T Consensus 15 ~~Q~~~l~~~a~~~g~~~~~i~~d~--~SG~~~~Rp~~~~ll~~~~~g---d~lvv~~ldRl~ 72 (146)
T cd03767 15 TRAKESLEAFATERGFYIAGFYVEN--ASGAKLDRPELFRLLDDAQSG---DVLLVEQIDRLS 72 (146)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEC--CcCCCCCCHHHHHHHHHhhCC---CEEEEEeCcccc
Confidence 3333567889999999999999854 332334456666777777643 345554334443
No 35
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=44.04 E-value=85 Score=26.72 Aligned_cols=68 Identities=6% Similarity=-0.143 Sum_probs=44.5
Q ss_pred eecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecc---cCcc--cchhHHHHHHHHHHHHhhhCC
Q psy10969 5 SFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLF---HLCL--QVTPMIEIALTQISSYAQSNG 79 (204)
Q Consensus 5 ~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLf---H~~l--~LsPmlEvAL~qvd~y~~~~~ 79 (204)
.|...-|.+|+-||-+-+-..++|++.|..+ +....+ +|+- ++.. ..-|. ....|
T Consensus 74 ~Ip~~l~~~ii~hAr~~~P~EacG~Iag~~~------~~~~r~---~p~~N~~~Sp~~~~~d~~-----------~~~~g 133 (192)
T TIGR03735 74 PIPASLLEEFAEAARAALPNEVAAWIVWNSE------TGSLRL---AALESIEASPGHIDYRRP-----------RLDDG 133 (192)
T ss_pred CCCHHHHHHHHHHHHhcCCcceEEEEEEcCC------CCEEEE---EeccccccCCceEEEcch-----------HHhCC
Confidence 4567789999999999999999999999531 112221 3332 2211 11222 22789
Q ss_pred ceEEEEEEeCCCC
Q psy10969 80 LVIAGYYLANENI 92 (204)
Q Consensus 80 l~IvGyY~Ane~~ 92 (204)
..+|+-||+.-..
T Consensus 134 e~lV~iyHSH~~s 146 (192)
T TIGR03735 134 EHLVVDLHSHGTG 146 (192)
T ss_pred CeEEEEEcCCCCC
Confidence 9999999987443
No 36
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain. Npl4p (nuclear protein localization-4) is identical to Hmg-CoA reductase degradation 4 (HRD4) protein and contains a domain that is part of the pfam clan MPN/Mov34-like. Npl4 plays an intermediate role between endoplasmic reticulum-associated degradation (ERAD) substrate ubiquitylation and proteasomal degradation. Npl4p associates with Cdc48p (Cdc48 in yeast and p97 or valosin-containing protein (VCP) in higher eukaryotes), the highly conserved ATPase of the AAA family, via ubiquitin fusion degradation-1 protein (Ufd1p) to form a Cdc48p-Ufd1p-Npl4p complex which then functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=43.95 E-value=2.4e+02 Score=25.21 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=65.7
Q ss_pred eeecHHHHHHHHhh-hhcCCCCceeEEEeeeecCCCCCCCCceEEEece--ecccCcc-cchhHHHHHHHHHHHHhhhCC
Q psy10969 4 ISFTDRAYCKMILH-AVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAI--PLFHLCL-QVTPMIEIALTQISSYAQSNG 79 (204)
Q Consensus 4 v~is~~AY~K~iLH-AaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaV--PLfH~~l-~LsPmlEvAL~qvd~y~~~~~ 79 (204)
+++...+...-++. .=+.-..-=.|+|.|+-......+-+.-.+|+|| |=-|... ++..+=+--...||.-|+.-|
T Consensus 13 vef~~~~~~~~f~~~~w~~~~~QR~G~LyG~y~~~~~~plgika~VeaIYEPPQ~~~~d~~~~l~d~~~~~vd~iA~~lG 92 (274)
T cd08061 13 VEFDNPSIVEFFLYVFWRKTGQQRIGFLYGRYDEDEDVPLGIKAVVEAIYEPPQEGTPDGFELLEDPNADTVDAIAAALG 92 (274)
T ss_pred EEEecHHHHHHHHHHHHHhhcceeEEEEEEEeecccCCCCceEEEEEEEECCCccCCCCCeEEccchhhhHHHHHHHHcC
Confidence 55665555555555 3222234457999997531101111234578998 8777653 222222233355899999999
Q ss_pred ceEEEEEEeCCCC---CCCCCCHHHHHHHHHHHHh
Q psy10969 80 LVIAGYYLANENI---KDVSYDKPYQSRIADKIAE 111 (204)
Q Consensus 80 l~IvGyY~Ane~~---~d~~~~~~~a~kIadkI~~ 111 (204)
|..||+=...-.- ++.-+| ..=...|.+.+.
T Consensus 93 L~~VG~IfT~l~~~~~d~~~LS-s~Evi~aA~~Q~ 126 (274)
T cd08061 93 LERVGWIFTDLPREDKDGYFLS-AEEVILAAKFQL 126 (274)
T ss_pred CeEEEEEEecCCCCCCCceeEC-HHHHHHHHHHhh
Confidence 9999998875322 245688 777778888885
No 37
>PF14778 ODR4-like: Olfactory receptor 4-like
Probab=41.01 E-value=46 Score=30.58 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=35.9
Q ss_pred EEEeeeecCCCCCCCCceEEEeceecccCcccch---------hHHHHHHHHHHHHhhh------CCceEEEEEEeC
Q psy10969 28 GVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVT---------PMIEIALTQISSYAQS------NGLVIAGYYLAN 89 (204)
Q Consensus 28 GvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~Ls---------PmlEvAL~qvd~y~~~------~~l~IvGyY~An 89 (204)
|+|||+.. .++.-.|+.++|-=+.....- -...+--.-|-+||++ .|+.|+|.|--.
T Consensus 1 GLlIGq~~-----s~~kd~Vv~l~~tP~~d~~~~~~~~~~~~~~~~~id~~WVaeHA~qVsRMLPGGi~VlGifvv~ 72 (362)
T PF14778_consen 1 GLLIGQSS-----SSQKDYVVHLARTPPEDTDDEESDVRTSDSSIKDIDEEWVAEHARQVSRMLPGGISVLGIFVVA 72 (362)
T ss_pred CeEecccc-----CCCcceEEEecCCCCccccccccccccccccccccCHHHHHHHHHHHHhhCCCCcEEEEEEEEc
Confidence 89999862 233467777777655442221 1122444556667775 899999999943
No 38
>PRK02399 hypothetical protein; Provisional
Probab=40.69 E-value=83 Score=29.84 Aligned_cols=33 Identities=12% Similarity=0.313 Sum_probs=22.6
Q ss_pred cccccchHHHHHHHHhhcc--cCcccccccccCCC
Q psy10969 153 IIVDQTTLSSVSTLIQRNI--SRHLVDFDNHLDNL 185 (204)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~--~~~lvDFDdHLddi 185 (204)
.+.|+++.+.+-+-|++.. ..+++..|.|++|+
T Consensus 354 ~f~Dpead~alf~~l~~~l~~~~~v~~~~~hIND~ 388 (406)
T PRK02399 354 PFHDPEADAAFFDALEETVTETRRLIEVPAHINDP 388 (406)
T ss_pred CccChhHHHHHHHHHHHhCCCCceEEECCCCCCCH
Confidence 3556666666666665554 56799999999774
No 39
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.66 E-value=97 Score=25.11 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=31.5
Q ss_pred CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q psy10969 78 NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT 127 (204)
Q Consensus 78 ~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~ 127 (204)
.|+.|||+|+..- +..-.+.|.+.|.+.-|+-+++-+-.-|.+
T Consensus 73 P~l~ivg~~~g~f-------~~~~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 73 PGLRIVGYHHGYF-------DEEEEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred CCeEEEEecCCCC-------ChhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 5899999998753 214567899999998888777666554444
No 40
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=35.71 E-value=1.3e+02 Score=22.87 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=33.3
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCCceeecc
Q psy10969 83 AGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVS 149 (204)
Q Consensus 83 vGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~~W~~~~ 149 (204)
.|.|.++ +|+.+.++|-+++.+.+++.-.+|+=.. ..++.+..-+....+|.+.+
T Consensus 28 ~GVyVg~-------~S~rVRd~lW~~v~~~~~~G~avmv~~~-----~~eqG~~~~t~G~~rr~~vD 82 (97)
T PRK11558 28 AGVYVGD-------VSRRIREMIWQQVTQLAEEGNVVMAWAT-----NTESGFEFQTFGENRRIPVD 82 (97)
T ss_pred CCcEEcC-------CCHHHHHHHHHHHHHhCCCCcEEEEEcC-----CCCCCcEEEecCCCCccEEe
Confidence 4778763 6668999999999999987544444111 12234444444444555443
No 41
>KOG3265|consensus
Probab=35.30 E-value=48 Score=29.25 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=29.9
Q ss_pred hhCCceEEEEEEeCCC----CCCCCCCHHHHHHHHHHHHhhCCC
Q psy10969 76 QSNGLVIAGYYLANEN----IKDVSYDKPYQSRIADKIAEFFPA 115 (204)
Q Consensus 76 ~~~~l~IvGyY~Ane~----~~d~~~~~~~a~kIadkI~~~~~~ 115 (204)
+.+...=||||..|+- ++.+-|+|+...|+-..|...-|.
T Consensus 102 ~gQEFIRvGYyVnNeY~~~elrEnpP~k~~idKv~RnIlaekpR 145 (250)
T KOG3265|consen 102 RGQEFIRVGYYVNNEYTEEELRENPPSKPLIDKLQRNILAEKPR 145 (250)
T ss_pred cCceeEEEEEEecCCCCchhhccCCCCchhHHHHHHHhhccCCc
Confidence 3445667999999975 445678888888888888766665
No 42
>KOG3096|consensus
Probab=35.05 E-value=44 Score=28.99 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=43.8
Q ss_pred EEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeCCCCC--CCCCCHHHHHHHHHHHHhhCC
Q psy10969 46 TYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIK--DVSYDKPYQSRIADKIAEFFP 114 (204)
Q Consensus 46 ~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~Ane~~~--d~~~~~~~a~kIadkI~~~~~ 114 (204)
+++||.|.|-+...=.-.=+.|..+||.-|+..+-. -.|.-.-.+. |...+ ++-.+=-+|+...-|
T Consensus 5 v~vDALPY~D~~Y~e~~~Rs~a~~lVEeE~rr~rpt--knyl~~lp~p~~s~f~t-~~m~ne~er~~~k~p 72 (225)
T KOG3096|consen 5 VSVDALPYFDSGYNEPGDRSAAAALVEEECRRYRPT--KNYLDHLPLPDYSAFLT-DRMENEFERAGKKEP 72 (225)
T ss_pred eeeccccccccccCchhhHHHHHHHHHHHHHhhcch--hhhhhcCCCcccchhhh-hHHHHHHHHHhccCc
Confidence 679999999988554338899999999999984422 2344332222 34456 666666677766444
No 43
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=34.26 E-value=1.6e+02 Score=22.94 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhh-hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC--CcEEEEEe
Q psy10969 63 MIEIALTQISSYAQ-SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP--AACLIVLD 122 (204)
Q Consensus 63 mlEvAL~qvd~y~~-~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~--~a~ll~iD 122 (204)
+.|=....++..+. +..+..+|.| .|.+++ ....+|.+.|.+..+ +.++++.|
T Consensus 12 lA~Gi~~~~~~~~g~~~~i~~~gg~------~d~~~g-t~~~~I~~ai~~~~~~~dgVlvl~D 67 (125)
T TIGR02364 12 IAEGIKELIKQMAGDDVTIISAGGT------DDGRLG-TSPDKIIEAIEKADNEADGVLIFYD 67 (125)
T ss_pred HHHHHHHHHHHHcCCCccEEEEecC------CCCCcc-chHHHHHHHHHHhcCCCCCEEEEEc
Confidence 55555566666654 4557777776 456788 889999999998865 56777765
No 44
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8. Members of this family are found in pre-mRNA-processing factor 8 (Prp8) which is a critical splicing factor, interacting with several other spliceosomal proteins, snRNAs, and the pre-mRNA, thus organizing and stabilizing the spliceosome catalytic core. Prp8 is one of the largest and most highly conserved of nuclear proteins, occupying a central position in the catalytic core of the spliceosome. Its C-terminal domain exhibits a JAB1/MPN-like core similar to deubiquitinating enzymes, but does not show catalytic isopeptidase activity, possibly because the putative isopeptidase center is covered by insertions and terminal appendices that are grafted onto this core, thus impairing the metal binding site. It is proposed that this domain is a protein interaction domain instead of a Zn(2+)-dependent metalloenzyme as proposed for some MPN proteins. The DEAD-box protein Brr2 and t
Probab=32.58 E-value=3.2e+02 Score=24.19 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=73.5
Q ss_pred HHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEE--eceecccCc---ccchhHHHHHHHHHHHHhhhCCceEE
Q psy10969 9 RAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYV--DAIPLFHLC---LQVTPMIEIALTQISSYAQSNGLVIA 83 (204)
Q Consensus 9 ~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~--DaVPLfH~~---l~LsPmlEvAL~qvd~y~~~~~l~Iv 83 (204)
+--+|-++--|.-- .-|+|+|-|+.. .+...|.-+ -.+|=-+.. ..|.. + ...++...||..+
T Consensus 42 knllkkFi~iaD~r-tQ~~GyLyG~~~----~d~~~vkeI~cIvipPQ~gt~~sv~l~~--~-----~~~~~~l~~Le~L 109 (252)
T cd08056 42 KNLLKKFISISDLR-TQIAGYLYGKSP----PDNPQVKEIRCIVLVPQLGTHQTVTLPQ--Q-----LPQHEYLEDLEPL 109 (252)
T ss_pred HHHHHHHHHHhhhc-ceEEEEEeccCC----CCCCCeEEEEEEEECCEeCCcCcEECCc--c-----CccchhhCCCEee
Confidence 33445555555443 369999999863 222233333 333433332 22222 1 2556678999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC-----CcEEEEEeCccccccccCccEEEEEecC-C-ceeeccC
Q psy10969 84 GYYLANENIKDVSYDKPYQSRIADKIAEFFP-----AACLIVLDNRKLTQTMQESALIVAQNSD-G-KWKPVSK 150 (204)
Q Consensus 84 GyY~Ane~~~d~~~~~~~a~kIadkI~~~~~-----~a~ll~iDn~kl~~~~~~~~l~~~~~~~-~-~W~~~~~ 150 (204)
|+=|-... ....++ +.-.....|+....| +++.+++-. ..++-.+..|.... | .|.+..+
T Consensus 110 GWIHTqp~-e~~~Ls-s~Dv~tha~~~~~~~~w~~~~~V~it~Sf-----tpGs~sl~ay~LT~~G~~wg~~n~ 176 (252)
T cd08056 110 GWIHTQPN-ELPQLS-PQDVTTHAKILADNPSWDGEKTVILTCSF-----TPGSCSLTAYKLTPEGYEWGKQNK 176 (252)
T ss_pred EEEEcCCC-CccccC-HHHHHHHHHHHHhccccCCCcEEEEEEcC-----CCCceEEEEEecCHHHHHHHHhCc
Confidence 99997432 223688 888889999999887 456665522 23455677788774 3 7765543
No 45
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=32.55 E-value=2.1e+02 Score=21.26 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Q psy10969 65 EIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAE 111 (204)
Q Consensus 65 EvAL~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~ 111 (204)
+-=...++.||..+|..|+.+|.-..........+|--.++.+.+.+
T Consensus 17 ~~Q~~~~~~~a~~~g~~i~~~~~d~~~s~~~~~~R~~~~~ll~~~~~ 63 (137)
T cd00338 17 ERQREALREYAARNGLEVVGEYEDAGSSATSLVDRPGLQRLLADVKA 63 (137)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcccccCCHHHHHHHHHHHc
Confidence 44456788999999999999998654333112334566666677765
No 46
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=32.52 E-value=1.2e+02 Score=28.68 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=24.7
Q ss_pred ccccccchHHHHHHHHhhcc---cCcccccccccCCC
Q psy10969 152 SIIVDQTTLSSVSTLIQRNI---SRHLVDFDNHLDNL 185 (204)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~---~~~lvDFDdHLddi 185 (204)
-.+.||++.+.+.+.|++.. ...++..|-|++|+
T Consensus 352 ~~f~Dpead~al~~~l~~~l~~~~i~v~~~~~hIND~ 388 (403)
T PF06792_consen 352 GPFYDPEADEALFDALRENLDGSGIEVIEVDAHINDP 388 (403)
T ss_pred CcCcChhHHHHHHHHHHHhCCCCCcEEEECCCCCCCH
Confidence 44666777777666666654 45899999999884
No 47
>COG2343 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.05 E-value=36 Score=27.37 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=56.8
Q ss_pred HhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHH-----HHhhhCCceEEEEEEe-
Q psy10969 15 ILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQIS-----SYAQSNGLVIAGYYLA- 88 (204)
Q Consensus 15 iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd-----~y~~~~~l~IvGyY~A- 88 (204)
+++..++...-.||..|+++. ...+++.-..|--|-. |.-.|-++..+ ++|-=|| ++|||.-
T Consensus 21 v~ps~~~V~v~~nG~viAdS~------~~~~l~E~~~pp~~Yi----P~~Di~~e~l~~t~~~T~Cp~KG--~AsYysv~ 88 (132)
T COG2343 21 VEPSSRRVQVIFNGEVIADSR------RAVVLVETSYPPVHYI----PPEDIRFEYLIPTPTHTYCPYKG--TASYYSVV 88 (132)
T ss_pred eecCCCeEEEEECCEEEeecC------CceEEEecCCCceeec----CHHHchHhhcccCCCccccCccc--ccceEEEE
Confidence 356667777888999999752 3456666667777754 66677776665 3566677 6789984
Q ss_pred --CCCCCCC-----CCCHHHHHHHHHHHH
Q psy10969 89 --NENIKDV-----SYDKPYQSRIADKIA 110 (204)
Q Consensus 89 --ne~~~d~-----~~~~~~a~kIadkI~ 110 (204)
.++-.|. .|. +.+++|.+.++
T Consensus 89 ~~~~~~~naaW~Y~~P~-p~a~~Ik~~vA 116 (132)
T COG2343 89 VGGERNPDAAWTYPNPK-PAARAIKGHVA 116 (132)
T ss_pred cCCccCCCceEecCCCc-HHHHHhcccee
Confidence 2333332 477 88999998885
No 48
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=31.54 E-value=37 Score=24.74 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=14.8
Q ss_pred ccCcccchhHHHHHHHHHHHH
Q psy10969 54 FHLCLQVTPMIEIALTQISSY 74 (204)
Q Consensus 54 fH~~l~LsPmlEvAL~qvd~y 74 (204)
.|+. + .+.++.+|.|||+|
T Consensus 5 shsn-P-~~vf~~il~Qie~Y 23 (77)
T PF11732_consen 5 SHSN-P-LIVFDVILSQIESY 23 (77)
T ss_pred hccC-c-HHHHHHHHHHHHHh
Confidence 4554 3 47889999999998
No 49
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.99 E-value=2.2e+02 Score=21.06 Aligned_cols=32 Identities=16% Similarity=0.455 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEE
Q psy10969 83 AGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVL 121 (204)
Q Consensus 83 vGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~i 121 (204)
.|.|.+| +|+.+.+++.+++.++.++.-.+|+
T Consensus 26 ~GVyVg~-------~s~rVRe~lW~~v~~~~~~G~a~m~ 57 (86)
T PF09707_consen 26 PGVYVGN-------VSARVRERLWERVTEWIGDGSAVMV 57 (86)
T ss_pred CCcEEcC-------CCHHHHHHHHHHHHhhCCCccEEEE
Confidence 4777763 6668999999999999887544444
No 50
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=30.81 E-value=42 Score=32.41 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhCCceEEEEEEeCCC
Q psy10969 65 EIALTQISSYAQSNGLVIAGYYLANEN 91 (204)
Q Consensus 65 EvAL~qvd~y~~~~~l~IvGyY~Ane~ 91 (204)
.---.+.|.||++-+.-|+|++.++|.
T Consensus 126 ~wNR~LLdkYC~ey~VGiIgF~~~~E~ 152 (487)
T PF12062_consen 126 SWNRELLDKYCREYGVGIIGFFKANEN 152 (487)
T ss_pred HHHHHHHHHHhHccCccEEEEecCCCC
Confidence 445578999999999999999999874
No 51
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=28.83 E-value=2.2e+02 Score=21.21 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHHhh-CCCcEEEEE
Q psy10969 83 AGYYLANENIKDVSYDKPYQSRIADKIAEF-FPAACLIVL 121 (204)
Q Consensus 83 vGyY~Ane~~~d~~~~~~~a~kIadkI~~~-~~~a~ll~i 121 (204)
.|.|.+ .+|+.+.++|-+++.+. .+++-++|+
T Consensus 26 ~GVyVg-------~~s~rVRe~lW~~v~~~~~~~G~avm~ 58 (87)
T TIGR01873 26 AGVYVG-------GVSASVRERIWDYLAQHCPPKGSLVIT 58 (87)
T ss_pred CCcEEc-------CCCHHHHHHHHHHHHHhCCCCccEEEE
Confidence 477876 36668999999999999 555444443
No 52
>PRK06934 flavodoxin; Provisional
Probab=28.16 E-value=2.4e+02 Score=24.33 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHhh----hCCceEEEEEEeCCCC---------------CCCCCCHHHHHHHHHHHHhhCCC
Q psy10969 60 VTPMIEIALTQISSYAQ----SNGLVIAGYYLANENI---------------KDVSYDKPYQSRIADKIAEFFPA 115 (204)
Q Consensus 60 LsPmlEvAL~qvd~y~~----~~~l~IvGyY~Ane~~---------------~d~~~~~~~a~kIadkI~~~~~~ 115 (204)
|.|.|-+++..+-+.+. .++=.+|-||...++. .|.++. ...++||+.|++....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~-GnTk~vAe~Ia~~~ga 86 (221)
T PRK06934 13 LILFLAVAVSSLSLIAEAADRNARRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVL-GSTQYVAQIIQEETGG 86 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCceEEEEEeccCCcccccccccccccccccCCCCC-CHHHHHHHHHHHHHCC
Confidence 34544444444444322 3445688999876532 234455 6889999999988653
No 53
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=27.93 E-value=1.7e+02 Score=24.73 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q psy10969 65 EIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT 127 (204)
Q Consensus 65 EvAL~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~ 127 (204)
++|-.-||.-|+.-|.+-+..=+.| |++-.++.+.+-|.+--.+.+++|+|.+=..
T Consensus 10 ~~A~ravE~aa~~iGgRCIS~S~GN-------PT~lsG~elV~lIk~a~~DPV~VMfDD~G~~ 65 (180)
T PF14097_consen 10 EYAKRAVEIAAKNIGGRCISQSAGN-------PTPLSGEELVELIKQAPHDPVLVMFDDKGFI 65 (180)
T ss_pred HHHHHHHHHHHHHhCcEEEeccCCC-------CCcCCHHHHHHHHHhCCCCCEEEEEeCCCCC
Confidence 6778888888888888777654444 5523388999999888888999999865443
No 54
>PF13554 DUF4128: Bacteriophage related domain of unknown function; PDB: 2L25_A.
Probab=27.75 E-value=63 Score=25.19 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=19.2
Q ss_pred hhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcE
Q psy10969 76 QSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAAC 117 (204)
Q Consensus 76 ~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ 117 (204)
+..|+..|..|... ..-. ..+++||++|++.|+..-
T Consensus 57 ~~~Gv~qi~v~~p~-----G~G~-~~~~~iAd~l~~~F~~g~ 92 (127)
T PF13554_consen 57 RYTGVFQINVFVPA-----GQGT-AAAEEIADELAAHFEAGT 92 (127)
T ss_dssp ---EEEEEEEEEE------SSS---THHHHHHHHHHH--TT-
T ss_pred EEEEEEEEEEEeeC-----CCCc-hHHHHHHHHHHHHhhccC
Confidence 34566666666542 2333 678999999999999543
No 55
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.70 E-value=3e+02 Score=21.24 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy10969 64 IEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPA 115 (204)
Q Consensus 64 lEvAL~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~ 115 (204)
+|-=...++.||+.+|..|++.|.-..... ....+|--.++.+.+.+.--+
T Consensus 20 le~Q~~~l~~~a~~~g~~i~~~~~D~~~SG-~~~~Rp~l~~ll~~~~~g~vd 70 (140)
T cd03770 20 IENQKAILEEYAKENGLENIRHYIDDGFSG-TTFDRPGFNRMIEDIEAGKID 70 (140)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEcCCCcC-CcCCCHHHHHHHHHHHcCCCC
Confidence 454456678899999999999998532111 123457777878888765334
No 56
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=25.38 E-value=1.3e+02 Score=25.29 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhC
Q psy10969 65 EIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFF 113 (204)
Q Consensus 65 EvAL~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~ 113 (204)
-+|-..||......++++||-+.- -- ++|++|+++|.+.-
T Consensus 18 Ria~eIiErnk~~~~~vlvGIktr--------Gv-~lA~rl~~~i~~~E 57 (179)
T COG2065 18 RIAHEIIERNKGLDNLVLVGIKTR--------GV-PLAERLAERIEELE 57 (179)
T ss_pred HHHHHHHHHhCCCCceEEEeEecC--------CH-HHHHHHHHHHHHHh
Confidence 378889998888889999999863 33 89999999998764
No 57
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=24.58 E-value=99 Score=24.23 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeC
Q psy10969 100 PYQSRIADKIAEFFPAACLIVLDN 123 (204)
Q Consensus 100 ~~a~kIadkI~~~~~~a~ll~iDn 123 (204)
++.+.++++|.++.|+++++++-|
T Consensus 96 ~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 96 KIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp HHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred hHHHHHHHHHHHhCCccEEEEeCC
Confidence 567789999999999999998843
No 58
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=22.91 E-value=71 Score=26.86 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=23.6
Q ss_pred CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeC
Q psy10969 78 NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDN 123 (204)
Q Consensus 78 ~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn 123 (204)
.-|.||-+ +.+.. -+-..+|+||.+..|.++++..+.
T Consensus 119 G~LaIv~l--------~~~y~-lVP~~vAeKI~~rd~~~iv~~~~~ 155 (177)
T PF09831_consen 119 GRLAIVRL--------EGGYE-LVPAEVAEKIAERDPSAIVLLNDP 155 (177)
T ss_pred CEEEEEEE--------CCEEE-EeeHHHHHHHHHhCCCeEEEccCC
Confidence 44888876 12222 344577888888888887766544
No 59
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.52 E-value=2.8e+02 Score=22.41 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=28.5
Q ss_pred CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q psy10969 78 NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT 127 (204)
Q Consensus 78 ~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~ 127 (204)
.|+.|||+++..-... -...|.++|.+.-|+-+++-+-.=|.+
T Consensus 71 p~l~i~g~~~g~~~~~-------~~~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 71 PGLKIVGYHHGYFGPE-------EEEEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CCcEEEEecCCCCChh-------hHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 7899999877643321 122388999988888777765443333
No 60
>PF10483 Elong_Iki1: Elongator subunit Iki1; InterPro: IPR019519 Histone acetylation protein (Hap) 2 (also known as Elongator complex protein 5) is one of three histone acetyltransferases proteins that, in yeasts, are found associated with elongating forms of RNA polymerase II (Elongator). The Haps can be isolated in two forms, as a six-subunit complex with Elongator, and as a complex of the three proteins on their own. The role of the Hap complex in transcription is still speculative, being possibly to keep the histone acetylation activity of free Elongator in check, allowing histone acetylation only in the presence of a transcribing polymerase, or the interaction with Haps might render Elongator susceptible to modifications thereby altering its activity []. This protein family also contains Dermal papilla-derived protein 6, which also belong to the ELP5 family. ; PDB: 4A8J_B 4EJS_B.
Probab=20.49 E-value=1.4e+02 Score=26.43 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCCceEEEece-ecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeCC
Q psy10969 41 SPKKLTYVDAI-PLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANE 90 (204)
Q Consensus 41 ~~~~v~i~DaV-PLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~Ane 90 (204)
..+.++|.|++ ||.++. +. ++ ...+.......+..|||.||..-
T Consensus 87 ~~~~lVvIDSLn~ll~~~-~~----~l-~~fLssl~~~p~~svv~~~H~Dl 131 (280)
T PF10483_consen 87 TKKFLVVIDSLNYLLNHH-PC----QL-SQFLSSLLSSPQSSVVGLYHTDL 131 (280)
T ss_dssp ---EEEEES-GGGS-GG--------GH-HHHHHHH---TTEEEEEEEETTS
T ss_pred CCCeEEEEEcchHHHHHH-HH----HH-HHHHHhcccCCCcEEEEEEccCc
Confidence 44678899999 666654 22 22 23444444456699999999874
No 61
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=20.05 E-value=87 Score=22.64 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHhhhCCceE
Q psy10969 61 TPMIEIALTQISSYAQSNGLVI 82 (204)
Q Consensus 61 sPmlEvAL~qvd~y~~~~~l~I 82 (204)
-|..|.-+.-||.||.++|+.+
T Consensus 14 yPs~e~i~~aIE~YC~~~~~~l 35 (74)
T PF14201_consen 14 YPSKEEICEAIEKYCIKNGESL 35 (74)
T ss_pred CCCHHHHHHHHHHHHHHcCCce
Confidence 4788999999999999988654
Done!