Query psy10969
Match_columns 204
No_of_seqs 109 out of 143
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 23:04:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o95_A 26S proteasome non-ATPa 99.7 9.9E-18 3.4E-22 137.7 12.0 124 3-141 9-142 (187)
2 4e0q_A COP9 signalosome comple 99.0 2.1E-09 7.1E-14 85.2 11.6 111 3-125 7-125 (141)
3 4b4t_V 26S proteasome regulato 99.0 6.6E-09 2.3E-13 91.7 12.6 127 3-141 26-159 (306)
4 2znr_A AMSH-like protease; met 98.2 9E-06 3.1E-10 66.4 10.8 112 3-125 10-125 (178)
5 2kks_A Uncharacterized protein 98.1 0.0001 3.5E-09 57.7 14.1 125 4-148 2-131 (146)
6 4b4t_U RPN8, 26S proteasome re 98.0 6.1E-05 2.1E-09 67.0 13.0 123 3-140 7-139 (338)
7 3rzv_A STAM-binding protein; u 97.9 8.4E-05 2.9E-09 62.5 10.8 109 3-124 43-157 (211)
8 2kcq_A MOV34/MPN/PAD-1 family; 97.7 4E-05 1.4E-09 60.5 5.6 89 4-102 1-96 (153)
9 1oi0_A AF2198, hypothetical pr 97.0 0.0061 2.1E-07 46.2 9.8 94 4-121 4-97 (124)
10 3uem_A Protein disulfide-isome 29.1 2.4E+02 0.0083 23.3 8.4 63 69-140 26-90 (361)
11 2l4c_A Endoplasmic reticulum r 26.8 1.4E+02 0.0048 21.7 5.8 63 69-140 30-94 (124)
12 3guv_A Site-specific recombina 26.6 2E+02 0.0068 21.4 8.0 63 64-127 24-88 (167)
13 2lco_A WALP19-P8 peptide; prol 23.7 26 0.00088 19.3 0.8 15 57-71 4-18 (26)
No 1
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.74 E-value=9.9e-18 Score=137.73 Aligned_cols=124 Identities=12% Similarity=0.154 Sum_probs=101.3
Q ss_pred ceeecHHHHHHHHhhhhcCC----CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh---HH--HHHHHHHHH
Q psy10969 3 EISFTDRAYCKMILHAVKYP----HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP---MI--EIALTQISS 73 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP----~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP---ml--EvAL~qvd~ 73 (204)
.|.|++.++.||+.|+.|+| ...|+|+|||+. .++.+.|+||+||.|......| ++ |....+++.
T Consensus 9 ~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~------~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~ 82 (187)
T 2o95_A 9 KVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSW------QKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGM 82 (187)
T ss_dssp EEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEE------SSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHH
T ss_pred EEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEE------cCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHH
Confidence 48999999999999999983 689999999987 2458999999999998765554 44 888899999
Q ss_pred HhhhC-CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 74 YAQSN-GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 74 y~~~~-~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
+.+.+ ++.||||||++...++ .-..|++.+++.++++++|++|..+.. ...++..|...
T Consensus 83 ~~~v~~~~~iVGWY~s~~~~s~------~d~~i~~~~~~~~~~~v~Livd~~~~~---~~l~i~ay~~~ 142 (187)
T 2o95_A 83 FKKVNARERIVGWYHTGPKLHK------NDIAINELMKRYCPNSVLVIIDVKPKD---LGLPTEAYISV 142 (187)
T ss_dssp HHTTSSSCEEEEEEECCSSCCT------THHHHHHHHTTTCTTCEEEEECCCTTC----CCSEEEEEEE
T ss_pred HHHhCCCCCEEEEEcCCCcCCc------ccHHHHHHHHhcCCCCEEEEECCCCCC---CCcCeEEEEEe
Confidence 88766 8999999999987743 223477888888999999999997753 23678888763
No 2
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.04 E-value=2.1e-09 Score=85.20 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=82.9
Q ss_pred ceeecHHHHHHHHhhhhcC-----CCCceeEEEeeeecCCCCCCCCceEEEeceecccCccc--chhHHHHHHHHHHHHh
Q psy10969 3 EISFTDRAYCKMILHAVKY-----PHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ--VTPMIEIALTQISSYA 75 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKy-----P~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~--LsPmlEvAL~qvd~y~ 75 (204)
.|.|++.+..||+=|+.+- ....|.|+|||.. .+.+++|+||.|+-|.... ...-.|-...+.+.+-
T Consensus 7 ~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~------~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k 80 (141)
T 4e0q_A 7 TISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQ------KGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYK 80 (141)
T ss_dssp EEEECHHHHHHHHHHHHCC------CCEEEEEEEEEE------ETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEE------eCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHH
Confidence 4889999999999999884 2357999999987 3568999999999997421 2333467777777776
Q ss_pred hh-CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcc
Q psy10969 76 QS-NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRK 125 (204)
Q Consensus 76 ~~-~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~k 125 (204)
+- .+..|||||+.... ++ +.-..|-+.+.+.++++++|++|-.+
T Consensus 81 ~v~~~e~iVGWY~s~~~-----~~-~~d~~i~~~~~~~~~~pV~L~~Dp~~ 125 (141)
T 4e0q_A 81 QVFSDLDFIGWYTTGDN-----PT-ADDIKIQRQIAAINECPIMLQLNPLS 125 (141)
T ss_dssp HHSTTCEEEEEEEEEC-------------CHHHHHHHTTCCCEEEEESCSC
T ss_pred HhCCCccEEEEEeCCCC-----CC-cchHHHHHHHHHHCCCCEEEEECCCc
Confidence 54 56999999998753 34 44446788888889999999998755
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=6.6e-09 Score=91.75 Aligned_cols=127 Identities=12% Similarity=0.141 Sum_probs=92.2
Q ss_pred ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCccc-----chhHHHHHHHHHHHHhhh
Q psy10969 3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ-----VTPMIEIALTQISSYAQS 77 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~-----LsPmlEvAL~qvd~y~~~ 77 (204)
.|.||+.|..||+.||..-....|.|+|||+.. ++..+.|+||.|+=|.... ..|..+. .+.+ .+++
T Consensus 26 ~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~-----~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~--~m~~-~~~~ 97 (306)
T 4b4t_V 26 TVYISSIALLKMLKHGRAGVPMEVMGLMLGEFV-----DDYTVNVVDVFAMPQSGTGVSVEAVDDVFQA--KMMD-MLKQ 97 (306)
T ss_dssp EEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEE-----TTTEEEEEEEECCCCEESSSCEECCCHHHHH--HHHH-HHHH
T ss_pred EEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEc-----CCeEEEEEEEEeCCcCCCCCchhcCCHHHHH--HHHH-HHHH
Confidence 489999999999999988777899999999752 4567999999999775432 3333222 1222 2333
Q ss_pred --CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969 78 --NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS 141 (204)
Q Consensus 78 --~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~ 141 (204)
.+..+|||||....+.. -|+ ..-...-..-+...+.++.|++|-.+-. .+...+..|...
T Consensus 98 v~~~~~vVGWYhShP~~~~-~~S-~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~--~G~~~i~Afr~~ 159 (306)
T 4b4t_V 98 TGRDQMVVGWYHSHPGFGC-WLS-SVDVNTQKSFEQLNSRAVAVVVDPIQSV--KGKVVIDAFRLI 159 (306)
T ss_dssp HSCCCCCSEEEEECCSSSC-CCC-HHHHHHHHHHHHHCSSCEEEEECSSSSS--SCSSCEEEEECC
T ss_pred hCCCcceeeEEecCCCCCC-cCC-HHHHHHHHHHHhcCCCcEEEEECCCcCC--CCceeeeEEEec
Confidence 45889999999877764 477 7776777777778899999999976543 345667777654
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.23 E-value=9e-06 Score=66.44 Aligned_cols=112 Identities=11% Similarity=0.036 Sum_probs=79.7
Q ss_pred ceeecHHHHHHHHhhhhc-CCC-CceeEEEeeeecCCCCCCCCceEEEeceecccCcccch--hHHHHHHHHHHHHhhhC
Q psy10969 3 EISFTDRAYCKMILHAVK-YPH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVT--PMIEIALTQISSYAQSN 78 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaK-yP~-~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~Ls--PmlEvAL~qvd~y~~~~ 78 (204)
.|.|+...+.||+-||-. +|. ..|+|+|+|+.. ++...|++++|+=-....-+ .+-+. . +-.+....
T Consensus 10 ~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~------~~~~~V~~v~~~pq~~t~~~~~~~~~~--e-~~~~~~~~ 80 (178)
T 2znr_A 10 CVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLT------HNEFTITHVIVPKQSAGPDYCDMENVE--E-LFNVQDQH 80 (178)
T ss_dssp CEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEE------TTEEEEEEEEECCEEEETTEEEECCHH--H-HHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEec------CCCeEEEEEEeCCcCCCCCeeccCCHH--H-HHHHHHhC
Confidence 378999999999999986 564 788899999872 34678899987643221110 00011 1 11235678
Q ss_pred CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcc
Q psy10969 79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRK 125 (204)
Q Consensus 79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~k 125 (204)
|+.+||+||...... ..|| +.-...+-+.+...+.++.|+++-.+
T Consensus 81 ~l~~vGwyHSHP~~~-~~pS-~~Dv~tq~~yq~~~~~~v~iIvsp~~ 125 (178)
T 2znr_A 81 DLLTLGWIHTHPTQT-AFLS-SVDLHTHCSYQLMLPEAIAIVCSPKH 125 (178)
T ss_dssp TCEEEEEEEECSSSC-SCCC-HHHHHHHHHHHHHCTTCEEEEEEGGG
T ss_pred CCEEEEEEeCCCCCC-CCCC-HHHHHHHHHHHhhcCCEEEEEEcCCC
Confidence 999999999975544 4688 88888888888888999998886644
No 5
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.11 E-value=0.0001 Score=57.72 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=82.3
Q ss_pred eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccC-----cccchhHHHHHHHHHHHHhhhC
Q psy10969 4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHL-----CLQVTPMIEIALTQISSYAQSN 78 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~-----~l~LsPmlEvAL~qvd~y~~~~ 78 (204)
+.|+..++.+|+-||.+-.-..++|+|+|+.. ++...|++++|+=-. .....|. .+..+...+...
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~------~~~~~v~~~~p~~n~~~~~~~f~~dp~---~~~~~~~~~~~~ 72 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRD------GDDRWVERVYPLNNLDQSPEHFSMDPR---EQLTAVKDMRKN 72 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEE------TTEEEEEEEECCCCCSCCSSSCCCCHH---HHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEc------CCCcEEEEEEECCCcCCCCceEEECHH---HHHHHHHHHHHC
Confidence 78999999999999998333799999999862 345788999998421 1233443 233444466778
Q ss_pred CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCCceeec
Q psy10969 79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPV 148 (204)
Q Consensus 79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~~W~~~ 148 (204)
|+.+||+||...... ..|| ..-.+.+ ..++++.+.+.-.. .+.+.+..|...++++...
T Consensus 73 g~~ivG~~HSHP~~~-~~PS-~~D~~~~-----~~~~~~~lIvs~~~----~~~~~~~af~~~~~~~~e~ 131 (146)
T 2kks_A 73 GWVMLGNFHSHPATP-ARPS-AEDKRLA-----FDPSLSYLIISLAE----PQKPVCKSFLIKKDGVDEE 131 (146)
T ss_dssp TCEEEEEEEEESSSC-SSCC-HHHHTTC-----CSSSCEEEEEECSC----SSSCEEEEEEECSSCEEEE
T ss_pred CCEEEEEEeCCCcCC-CCCC-HHHHHhh-----hcCCCeEEEEEccC----CCceEEEEEEEeCCeEEEE
Confidence 999999999986544 4677 4443322 23555544442211 1245678888877777653
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.1e-05 Score=67.03 Aligned_cols=123 Identities=8% Similarity=0.061 Sum_probs=82.3
Q ss_pred ceeecHHHHHHHHhhhhc-C--CCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh-----HHHHHHHHHHHH
Q psy10969 3 EISFTDRAYCKMILHAVK-Y--PHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP-----MIEIALTQISSY 74 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaK-y--P~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP-----mlEvAL~qvd~y 74 (204)
+|.|.+.+..+|+=|..+ . -...|.|.|||.. .|..|+|++|.|+-|....-.+ =.+-.-.+.+.|
T Consensus 7 ~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~------~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~ 80 (338)
T 4b4t_U 7 KVTIAPLVLLSALDHYERTQTKENKRCVGVILGDA------NSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMC 80 (338)
T ss_dssp EEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEE------CSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEE------cCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHH
Confidence 489999999999999765 2 2357999999986 4678999999999886432111 012233344443
Q ss_pred hh-hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC-CcEEEEEeCccccccccCccEEEEEe
Q psy10969 75 AQ-SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP-AACLIVLDNRKLTQTMQESALIVAQN 140 (204)
Q Consensus 75 ~~-~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~-~a~ll~iDn~kl~~~~~~~~l~~~~~ 140 (204)
-+ -..+.|||||+... .+. +....|-+-+.+.++ .++++++|-..- .+.-++.+|..
T Consensus 81 kkV~~~e~iVGWY~tg~-----~~~-~~d~~Ih~~~~~~~~~~pi~l~~d~~~~---~~~lpi~aY~s 139 (338)
T 4b4t_U 81 KKINAKEKLIGWYHSGP-----KLR-ASDLKINELFKKYTQNNPLLLIVDVKQQ---GVGLPTDAYVA 139 (338)
T ss_dssp HHHCCSCEEEEEEECCS-----SCC-STHHHHHHHHGGGCCSCCCEEEECSCCC---SSSCSEEEEEE
T ss_pred hhcCccCCEEEEEecCC-----CCC-ccHHHHHHHHHhccCCCcEEEEecCCCC---CCCcceEEEEe
Confidence 33 26799999999753 344 555678888888774 667777765322 23345677754
No 7
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=97.91 E-value=8.4e-05 Score=62.51 Aligned_cols=109 Identities=11% Similarity=0.102 Sum_probs=78.9
Q ss_pred ceeecHHHHHHHHhhhhcC-CC-CceeEEEeeeecCCCCCCCCceEEEeceecccCccc----chhHHHHHHHHHHHHhh
Q psy10969 3 EISFTDRAYCKMILHAVKY-PH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ----VTPMIEIALTQISSYAQ 76 (204)
Q Consensus 3 ~v~is~~AY~K~iLHAaKy-P~-~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~----LsPmlEvAL~qvd~y~~ 76 (204)
.|.|+...+.|++-||-.- |. ..|+|+|+|+. .++..+|++++.+.-.... +....| +. .|..
T Consensus 43 ~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~------~~~~~~I~~v~~ppq~gt~~~v~~~~~~e----~~-~~~~ 111 (211)
T 3rzv_A 43 HVVVPGRLCPQFLQLASANTARGVATCGILCGKL------MRNEFTITHVLIPKQSAGSDYCNTENEEE----LF-LIQD 111 (211)
T ss_dssp CEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEE------ETTEEEEEEEEECCEEECSSCEEECCHHH----HH-HHHH
T ss_pred EEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEc------CCCCEEEEEEEeCCccCCCCceeccChHH----HH-HHHh
Confidence 3789999999999999884 53 68889999987 2356888999855432221 111111 11 2334
Q ss_pred hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCc
Q psy10969 77 SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNR 124 (204)
Q Consensus 77 ~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~ 124 (204)
..|+.+||+||...... ..|| +.-.....+.+...+.++.|++|-.
T Consensus 112 ~~~l~~vGWyHSHP~~~-~~pS-~~Dl~tq~~~q~~~~~~I~IVvsP~ 157 (211)
T 3rzv_A 112 QQGLITLGWIHTHPTQT-AFLS-SVDLHTHCSYQMMLPESVAIVCSPK 157 (211)
T ss_dssp HHTCEEEEEEEECTTSC-SCCC-HHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred hCCCEEEEEEeCCCCCC-CCCC-HHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 58999999999865433 5688 8888888889888999999999754
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=97.73 E-value=4e-05 Score=60.52 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=63.8
Q ss_pred eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccC-------cccchhHHHHHHHHHHHHhh
Q psy10969 4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHL-------CLQVTPMIEIALTQISSYAQ 76 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~-------~l~LsPmlEvAL~qvd~y~~ 76 (204)
+.|+..++.+|+-||.+---..++|+|+|+.. .++.+.|++++|+-=. ...+.|. .+..+...++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~-----~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~---~~~~~~~~~~ 72 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVT-----DDGDNRVAALHRATNRRSEQRTRRYELTAD---DYRAADAAAQ 72 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEEC-----TTSCEEEEEEEESSCCCCCCCSCCSSCCCC---SHHHHHHHHH
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeec-----cCCCeEEEEEEECCCCCCCCCCcEEEECHH---HHHHHHHHHH
Confidence 36899999999999998433799999999861 1456889999999643 1223443 2334455567
Q ss_pred hCCceEEEEEEeCCCCCCCCCCHHHH
Q psy10969 77 SNGLVIAGYYLANENIKDVSYDKPYQ 102 (204)
Q Consensus 77 ~~~l~IvGyY~Ane~~~d~~~~~~~a 102 (204)
+.|+.|||+||...... ..|| ..-
T Consensus 73 ~~g~~ivG~yHSHP~~~-~~PS-~~D 96 (153)
T 2kcq_A 73 EQGLDVVGVYHSHPDHP-ARPS-ATD 96 (153)
T ss_dssp HHTCEEEEEEEECSSSS-SSCC-HHH
T ss_pred HCCCeEEEEEeCCCCCC-CCCC-HHH
Confidence 78999999999987644 4677 543
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=96.98 E-value=0.0061 Score=46.17 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=59.5
Q ss_pred eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEE
Q psy10969 4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIA 83 (204)
Q Consensus 4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~Iv 83 (204)
+.|+..++.+|+-||.+---..++|+|+|+. + .|++.+|+= .. .-.|-.+.-+ .....|+.||
T Consensus 4 v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~-------~---~v~~~~~~p-~~-~~~~~~~f~~-----~~~~~~~~iv 66 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSAHPDEFIALLSGSK-------D---VMDELIFLP-FV-SGSVSAVIHL-----DMLPIGMKVF 66 (124)
T ss_dssp CEECHHHHHHHHHHHHHHTTSCCEEEEEEST-------T---EECEEEECC-CC-C------------------CCCEEE
T ss_pred EEEcHHHHHHHHHHHHhcCCCeeEEEEeccc-------C---EEEEEEECC-CC-CCCcCceeee-----eeccCCCEEE
Confidence 7899999999999997543469999999964 1 778998886 33 2223211111 2345889999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEE
Q psy10969 84 GYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVL 121 (204)
Q Consensus 84 GyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~i 121 (204)
|.||...... ..|| ..-.+.+. .+++..+.+
T Consensus 67 G~~HSHP~~~-~~PS-~~D~~~~~-----~~~~~~lIv 97 (124)
T 1oi0_A 67 GTVHSHPSPS-CRPS-EEDLSLFT-----RFGKYHIIV 97 (124)
T ss_dssp EEEEEESSSC-CSCC-HHHHHHHH-----HSCSEEEEE
T ss_pred EEEEECcCCC-CccC-HHHHHhhh-----cCCCEEEEE
Confidence 9999986543 4688 55444433 255555544
No 10
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=29.09 E-value=2.4e+02 Score=23.27 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc--ccccCccEEEEEe
Q psy10969 69 TQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT--QTMQESALIVAQN 140 (204)
Q Consensus 69 ~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~--~~~~~~~l~~~~~ 140 (204)
.+++.+-+....++||||... + .-..+.-..+++.+.+--+...++.++. .+...|.+.+|..
T Consensus 26 ~~~~~~~~~~~~~vvgff~~~--------~-~~~~~~f~~~A~~~~~~~F~~t~~~~v~~~~~v~~~~i~lfk~ 90 (361)
T 3uem_A 26 AAAESLVESSEVAVIGFFKDV--------E-SDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKK 90 (361)
T ss_dssp HHHHHHHHTSSEEEEEECSCT--------T-SHHHHHHHHHHHHCSSSCEEEECCHHHHHHTTCSSSEEEEEES
T ss_pred HHHHHHHhcCCcEEEEEEcCC--------C-chHHHHHHHHHhcCCCceEEEECcHHHHHHhCCCCCeEEEEEe
Confidence 456667778999999999632 1 1223455555555555555566666654 2334577888865
No 11
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=26.84 E-value=1.4e+02 Score=21.68 Aligned_cols=63 Identities=6% Similarity=0.238 Sum_probs=36.1
Q ss_pred HHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccc--cccCccEEEEEe
Q psy10969 69 TQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQ--TMQESALIVAQN 140 (204)
Q Consensus 69 ~qvd~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~--~~~~~~l~~~~~ 140 (204)
..++..-.....+||||+..- +. + ..+.-.++++.+++.-+...++..+.. +...|.+.+|..
T Consensus 30 ~e~e~fi~~~~v~VVGfF~~~----~~-~----~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~~~~vvlfkk 94 (124)
T 2l4c_A 30 PAAMEFIAATEVAVIGFFQDL----EI-P----AVPILHSMVQKFPGVSFGISTDSEVLTHYNITGNTICLFRL 94 (124)
T ss_dssp HHHHHHHHTSSEEEEEECSCT----TS-T----HHHHHHHHHHHCTTSEEEEECCHHHHHHTTCCSSCEEEEET
T ss_pred HHHHHHHhcCCCEEEEEECCC----CC-h----hHHHHHHHHHhCCCceEEEEChHHHHHHcCCCCCeEEEEEc
Confidence 345555567889999999632 11 1 123444445555555555666666542 223566788764
No 12
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=26.64 E-value=2e+02 Score=21.44 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCC-CHHHHHHHHHHHHhhCC-CcEEEEEeCcccc
Q psy10969 64 IEIALTQISSYAQSNGLVIAGYYLANENIKDVSY-DKPYQSRIADKIAEFFP-AACLIVLDNRKLT 127 (204)
Q Consensus 64 lEvAL~qvd~y~~~~~l~IvGyY~Ane~~~d~~~-~~~~a~kIadkI~~~~~-~a~ll~iDn~kl~ 127 (204)
+|-=...+..||..+|+.|++.|.-.. .+-... .+|--.++.+.|.+.-. --+|++-+=.+|.
T Consensus 24 l~~Q~~~l~~~a~~~g~~i~~~~~D~g-~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~ 88 (167)
T 3guv_A 24 LEAQKSRMKAFAIYNDYEIVGEYEDAG-KSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFA 88 (167)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEECC-CSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeecC-CCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhc
Confidence 344456788999999999999998432 221222 34667777778876631 1244444445554
No 13
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=23.66 E-value=26 Score=19.26 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.9
Q ss_pred cccchhHHHHHHHHH
Q psy10969 57 CLQVTPMIEIALTQI 71 (204)
Q Consensus 57 ~l~LsPmlEvAL~qv 71 (204)
|+.|+|.+-+||++-
T Consensus 4 wlalapalalalalw 18 (26)
T 2lco_A 4 WLALAPALALALALW 18 (26)
T ss_pred HHHHhHHHHHHHHHH
Confidence 567899998888764
Done!