RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10969
(204 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-07
Identities = 50/236 (21%), Positives = 80/236 (33%), Gaps = 76/236 (32%)
Query: 2 SEISFTDRAYCKMI-------LHAVK-YPHCSI------------NGV---LLAVTVPTT 38
S SF K I + + YP+ S+ GV +L+++ T
Sbjct: 288 SWESFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 39 KESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNG---LVIAGY----YLANEN 91
++ + ++ HL +EI+L NG LV++G Y N
Sbjct: 347 EQVQDYVNKTNS----HL--PAGKQVEISLV--------NGAKNLVVSGPPQSLYGLNLT 392
Query: 92 IKDVS----YDKPYQSRI---ADKIA---EF------F------PAACLIVLDNRKLTQT 129
++ D QSRI K+ F F PA+ LI D K +
Sbjct: 393 LRKAKAPSGLD---QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 130 MQESAL-I-VAQNSDGK-WKPVSKN--SIIVDQTTLSSVS-TLIQRNISRHLVDFD 179
+ I V DG + +S + IVD V + + H++DF
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 29.6 bits (66), Expect = 0.88
Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 62/188 (32%)
Query: 21 YPH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVT-PMIEIALTQISSY---A 75
+ +I L + Y+ +IP ++ P+I + Q++ Y A
Sbjct: 209 FTQGLNILEWL------ENPSNTPDKDYLLSIP-------ISCPLI--GVIQLAHYVVTA 253
Query: 76 QSNGL------------------VIAGYYLANENIKDVSYDKPYQSRIADKIAE--FFP- 114
+ G ++ +A + S++ + K FF
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD----SWESFFV--SVRKAITVLFFIG 307
Query: 115 AACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRH 174
C N L ++ E +L +N++G P + + S+S L Q + +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSL---ENNEG--VP----------SPMLSISNLTQEQVQDY 352
Query: 175 LVDFDNHL 182
+ ++HL
Sbjct: 353 VNKTNSHL 360
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 55/235 (23%)
Query: 6 FTDRAY--CKMILHAVKYP--------HCSI------NGVLLAVTVPTTK-----ESPKK 44
+ Y C ++L V+ C I V ++ TT
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 45 LTYVDAIPLFHLCLQVTP------MIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYD 98
LT + L L P ++ ++S A+S I +N K V+ D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES----IRDGLATWDNWKHVNCD 353
Query: 99 KPYQSRIADKIAEFFPAACLIVLDNRKLTQTM---QESALIVAQNSDGKWKPVSKNSIIV 155
K + I + PA + RK+ + SA I W V K+ ++V
Sbjct: 354 K-LTTIIESSLNVLEPA------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 156 DQTTLSSVSTLIQRN-----ISRHLVDFDN--HLDNLSADWTNSELNEIIEKEYQ 203
L S L+++ IS + + L+N A L+ I Y
Sbjct: 407 VVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYA------LHRSIVDHYN 454
Score = 36.8 bits (84), Expect = 0.004
Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 46/153 (30%)
Query: 51 IPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIA 110
L L Q+ P T S ++ + L I ++ + KPY++
Sbjct: 200 EMLQKLLYQIDPN----WTSRSDHSSNIKLRIH---SIQAELRRLLKSKPYEN------- 245
Query: 111 EFFPAACLIVLDNRKLTQTMQESALIVAQNSDGK-WKPVSKNS-IIVDQTT-LSSVSTLI 167
CL+VL N V + K W + + I++ TT V+ +
Sbjct: 246 ------CLLVLLN-------------V---QNAKAWNAFNLSCKILL--TTRFKQVTDFL 281
Query: 168 QRNISRHLVDFDNHLDNLSADWTNSELNEIIEK 200
+ H+ LD+ S T E+ ++ K
Sbjct: 282 SAATTTHIS-----LDHHSMTLTPDEVKSLLLK 309
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.032
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 39 KESPKKLT-----YV-DAIPLFHLCLQVTPMIE 65
K++ KKL Y D+ P L ++ T +E
Sbjct: 19 KQALKKLQASLKLYADDSAPA--LAIKAT--ME 47
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide
complex, peptide binding protein; 1.30A {Thermus
thermophilus}
Length = 603
Score = 26.4 bits (58), Expect = 7.2
Identities = 6/62 (9%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 135 LIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLD---NLSADWTN 191
L++ + + P + + ++ + I++ + + F+ L+ +
Sbjct: 8 LVIGASQE----PRVLAGDFLRVISNQAIKSEIEQYLFAPFIGFNADSQNFPVLATEVPT 63
Query: 192 SE 193
E
Sbjct: 64 LE 65
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli}
PDB: 3fi1_A
Length = 388
Score = 26.0 bits (58), Expect = 9.2
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 13/44 (29%)
Query: 23 HCSINGVLLAVTVPTTK---ESP-KKL--------TYVDAIPLF 54
H ++ GV++ +P + SP K+L Y+ +PLF
Sbjct: 225 HATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYL-ILPLF 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.374
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,930,907
Number of extensions: 157467
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 8
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)