RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10969
         (204 letters)



>d1ufaa1 a.8.3.3 (A:413-517) Hypothetical protein TT1467, domain 2
           {Thermus thermophilus [TaxId: 274]}
          Length = 105

 Score = 27.5 bits (61), Expect = 0.53
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 13/70 (18%)

Query: 120 VLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFD 179
           VL    L Q M+E  L++ + SD  W        +++     + +         H   F 
Sbjct: 28  VLPEGVLRQAMRE--LLLLEASD--W------PFLMETGQAEAYAR---ERYEEHARAFF 74

Query: 180 NHLDNLSADW 189
           + L   S + 
Sbjct: 75  HLLKGASPEE 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 709,764
Number of extensions: 29120
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)