BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10975
(574 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242022637|ref|XP_002431746.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517061|gb|EEB19008.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 510
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 302/477 (63%), Positives = 335/477 (70%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
M VEGVF+VN+HLEKLML+EL+N+CRPGMVGGFLPGVKQIANVAALPGIV
Sbjct: 35 MKVEGVFYVNNHLEKLMLDELKNACRPGMVGGFLPGVKQIANVAALPGIVGKSVGLPDVH 94
Query: 51 ---GRSVG------LPDVHSVPS-----------TQWLSDNTMRSSNIWKRSPLTLGAGN 90
G ++G + D SV S + L N M + + LT +
Sbjct: 95 SGYGFAIGNMAAFDMSDPKSVVSPGGVGFDINCGVRLLRTNLMEKDILPVKEQLTQSLFD 154
Query: 91 HYA-----------EIQIVDEIYDK-----------WAASKMGIEDVGQVC------VMI 122
H + ++E + WA K E+ G++ V +
Sbjct: 155 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSM 214
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAEIQ+VDEIYDKWAASKMGIE GQ+CVMIHSGSRGFGHQ
Sbjct: 215 RAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAASKMGIESKGQICVMIHSGSRGFGHQ 273
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVI 234
VATDALVQMEKAMKRDNIETNDRQLACARINS K+ A A F +
Sbjct: 274 VATDALVQMEKAMKRDNIETNDRQLACARINSPEGQDYLKSMAAAANFAWVNRSSMTFLC 333
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AFAKQFN+ PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLVHRKGSTRAFPPHHPLI
Sbjct: 334 RQAFAKQFNSCPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLVHRKGSTRAFPPHHPLI 393
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETFGSTCHGAGRALSRAKSRRNLDYQ+V
Sbjct: 394 PVDYQLTGQPVLIGGTMGTCSYVLTGTQQGMLETFGSTCHGAGRALSRAKSRRNLDYQQV 453
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
LNKL GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 454 LNKLSDMGISIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKCIKLRPIAVIKG 510
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 146 EQLTQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 205
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVSMRAKKRGLPQ+
Sbjct: 206 NADPSKVSMRAKKRGLPQL 224
>gi|443722955|gb|ELU11596.1| hypothetical protein CAPTEDRAFT_227476 [Capitella teleta]
Length = 446
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 277/430 (64%), Positives = 313/430 (72%), Gaps = 32/430 (7%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG+F+VN++LE+LM +ELR R G GGFLPG+KQI NVA+LPGIVG+SVGLPDVH
Sbjct: 30 MNVEGIFYVNENLERLMFDELRQHTRTGGFGGFLPGMKQIGNVASLPGIVGKSVGLPDVH 89
Query: 61 SVPSTQWLSDNTMRSSNIWKRSPLTLGAG-------------NHYAEIQIVDEIYDKWAA 107
S + M + ++ + G + E I+ + ++ A
Sbjct: 90 S---GYGFAIGNMAAFDMTDPKAVVSPGGVGFDINCGVRLLRTNLTEADIL-PVKEQLAQ 145
Query: 108 SKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC 167
S VG GS+G G AGNHYAEIQ+VD+IYDK+AASKMGIE GQVC
Sbjct: 146 SMFDHIPVG-------VGSKGLG--TLGAGNHYAEIQVVDDIYDKFAASKMGIEHKGQVC 196
Query: 168 VMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD 227
VMIH GSRG GHQVATDALV MEKAMKRDNI NDRQLACA I+S + + + K +
Sbjct: 197 VMIHCGSRGLGHQVATDALVAMEKAMKRDNIVVNDRQLACAHIHSQEGQDYLKGMAAAAN 256
Query: 228 ------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 281
+ +FAK F TTPDDLDMHVIYDVSHNIAK EEH V GKQKTLLVHRK
Sbjct: 257 YAWVNRSSMTFLCRQSFAKMFQTTPDDLDMHVIYDVSHNIAKVEEHFVGGKQKTLLVHRK 316
Query: 282 GSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALS 341
GSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGT+ GM+ETFGSTCHGAGRALS
Sbjct: 317 GSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTQTGMEETFGSTCHGAGRALS 376
Query: 342 RAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTF 401
RAKSRRNLDY +VL LE +GISIRVASPKLVMEEAPESYKNVTDVVDTCHA GIS+K
Sbjct: 377 RAKSRRNLDYTDVLAALERKGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISEKAI 436
Query: 402 KLRPVAVIKG 411
KLRP+AVIKG
Sbjct: 437 KLRPIAVIKG 446
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNA 440
+ E+LAQSMFDHIPVGVGSKG+ + A
Sbjct: 139 VKEQLAQSMFDHIPVGVGSKGLGTLGA 165
>gi|91093759|ref|XP_969671.1| PREDICTED: similar to GA22169-PA [Tribolium castaneum]
gi|270012976|gb|EFA09424.1| hypothetical protein TcasGA2_TC010635 [Tribolium castaneum]
Length = 506
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/478 (60%), Positives = 325/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEGVF+VN LEKLMLEELRN+CRPGM GGF LPG+
Sbjct: 31 MNVEGVFYVNQTLEKLMLEELRNACRPGMAGGFLPGVKQIANVAALPGIVGKSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + +P + L+ +
Sbjct: 91 SGYGFAIGNMAAFDVDNPESIVSPGGVGFDINCGVRLLRTNLFEKDVLPVKEQLAQSLFD 150
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 151 HIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLNADPSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQVCVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQVCVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALVQMEKAMKRD IETNDRQLACARI+S K+ A A F +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARISSQEGQDYLKSMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQFN PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFNMAPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETFGSTCHGAGRALSRAKSRRNLDY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGMLETFGSTCHGAGRALSRAKSRRNLDYTD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VLNKLE GISIRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 449 VLNKLEEMGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKCIKLRPIAVIKG 506
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVSMRAKKRGLPQ+
Sbjct: 202 NADPSKVSMRAKKRGLPQL 220
>gi|307182427|gb|EFN69663.1| UPF0027 protein C22orf28 [Camponotus floridanus]
Length = 506
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 285/478 (59%), Positives = 329/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVK---------- 38
MNVEGVF+VN LE+LM EELRN+CRPG VGGFL PG+
Sbjct: 31 MNVEGVFYVNHTLERLMFEELRNACRPGAVGGFLPGMKQIANVAALPGIVWRSIGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + SD + +++
Sbjct: 91 SGYGFAIGNMAAFDMDDPKSIVSPGGVGFDINC-GVRLLRTNLFESDVLPIKEQLAQSMF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRDNIETNDRQLACA I S + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQFN++PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM+ETFGSTCHGAGRALSRAKSRRNLDY++
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMKETFGSTCHGAGRALSRAKSRRNLDYKQ 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE GISIRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 449 VLEKLEELGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKCIKLRPIAVIKG 506
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/79 (97%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVSMRAKKRGLPQ+
Sbjct: 202 NADPSKVSMRAKKRGLPQL 220
>gi|307204121|gb|EFN82990.1| UPF0027 protein C22orf28-like protein [Harpegnathos saltator]
Length = 506
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 284/478 (59%), Positives = 326/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M V+GVF+VN+ LEKLM EELRN+CRPG +GGF LPG+
Sbjct: 31 MKVDGVFYVNNTLEKLMFEELRNACRPGTIGGFLPGMKQIANVAALPGIVWRSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPKSIVSPGGVGFDINC-GVRLLRTNLYEEDVLPVKEQLAQSMF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNSRDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALVQMEKAMKRDNIETNDRQLACA I S K+ A A F +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQFN++PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM+ETFGSTCHGAGRALSRAKSRRNLDY++
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMKETFGSTCHGAGRALSRAKSRRNLDYKQ 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE+ GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 449 VLEKLENLGISIRVASPKLVMEEAPESYKNVTDVVNTCHTAGISKKCIKLRPIAVIKG 506
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKGIIPMN+RDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSMFDHIPVGVGSKGIIPMNSRDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVSMRAKKRGLPQ+
Sbjct: 202 NADPSKVSMRAKKRGLPQL 220
>gi|332375715|gb|AEE62998.1| unknown [Dendroctonus ponderosae]
Length = 506
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 286/478 (59%), Positives = 324/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN LEKLMLEELRNSCRPGMVGGF LPG+
Sbjct: 31 MRVEGVFYVNQTLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGKSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPESIVSPGGVGFDINC-GVRLLRTNLFEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQVCVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQVCVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALVQMEKAMKRD IETNDRQLACARINS K+ A A F +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKSMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQF+TTPDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKQFDTTPDDLDMHVIYDVSHNIAKVEEHIVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTM TCSYVLTGTE+GM ETFGSTCHGAGRALSRAKSRRN+DY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMVTCSYVLTGTEQGMLETFGSTCHGAGRALSRAKSRRNIDYTD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL ++E I+IRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 449 VLKRMEDMNIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG 506
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVSMRAKKRGLPQ+
Sbjct: 202 NADPSKVSMRAKKRGLPQL 220
>gi|321455578|gb|EFX66707.1| hypothetical protein DAPPUDRAFT_302483 [Daphnia pulex]
Length = 505
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/478 (59%), Positives = 321/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
MNVEG+F+VN++LE LM +ELRN+C G+VGGFLPG+KQ
Sbjct: 30 MNVEGIFYVNNNLEDLMFDELRNACAQGLVGGFLPGMKQIANVAALPGIVGRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I NVAA PG VG + L + P + L+ +
Sbjct: 90 SGYGFAIGNVAAFDMDDPNSIVSPGGVGFDINCGVRLLRTNLTEKDVQPFKEQLTQSMFD 149
Query: 75 SSNIWKRS----PLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ S P+T E+ + + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGVIPITAQDLEEALEMGVDWSLREGY-AWAEDKEHCEEFGRMLNADPSKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA+KMGIE GQVC+MIHSGSRGFGH
Sbjct: 209 LRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAANKMGIEHKGQVCIMIHSGSRGFGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDAL M+KAMKRD I TNDRQLACARI+S K A A F +
Sbjct: 268 QVATDALNSMDKAMKRDKIVTNDRQLACARISSTEGQDYLKGMAAAANFAWVNRASMTFL 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQFN+TPDDLDMHVIYDVSHNIAK E+H VDGK KTLLVHRKGSTRAFPPHHPL
Sbjct: 328 CRQAFAKQFNSTPDDLDMHVIYDVSHNIAKVEQHTVDGKLKTLLVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSY+LTGTE+GM ETFGSTCHGAGRALSRAKSRRNLDY E
Sbjct: 388 IPVDYQLTGQPVLIGGTMGTCSYILTGTEQGMVETFGSTCHGAGRALSRAKSRRNLDYTE 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL +L+ QGISIRVASPKLVMEEAPESYKNVTDVVDTCHA GISKKT KLRP+AVIKG
Sbjct: 448 VLERLKEQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKTVKLRPIAVIKG 505
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QSMFDHIPVGVGSKG+IP+ A+DLEEALEMG+DWSLREGY WAEDKEHCEE+GRML
Sbjct: 141 EQLTQSMFDHIPVGVGSKGVIPITAQDLEEALEMGVDWSLREGYAWAEDKEHCEEFGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS+RAKKRGLPQ+
Sbjct: 201 NADPSKVSLRAKKRGLPQL 219
>gi|383862089|ref|XP_003706516.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Megachile rotundata]
Length = 506
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 283/478 (59%), Positives = 323/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN+ LE+LM +ELRN+CRPG VGGF LPG+
Sbjct: 31 MKVEGVFYVNNTLERLMFDELRNACRPGAVGGFLPGMKQIANVAALPGIVWRSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPSTQWLSDNT 72
I N+AA PG VG + DV V S
Sbjct: 91 SGYGFAIGNMAAFDMKDPKSIVSPGGVGFDINCGVRLLRTNLFEEDVQPVKEQLAQSMFD 150
Query: 73 MRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 151 HIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLNADSSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRDNIETNDRQLACA INS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHINSQEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQF +PDDLDMHVIYDVSHNIAK EEHMV+GKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFRMSPDDLDMHVIYDVSHNIAKIEEHMVEGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM+ETFGSTCHGAGRALSRAKSRRNLDY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMKETFGSTCHGAGRALSRAKSRRNLDYTD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE QGISIRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 449 VLEKLERQGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKCIKLRPIAVIKG 506
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 126/227 (55%), Gaps = 58/227 (25%)
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI-YLNERLAQSMFDHI---- 426
+V+ + E K + V DTC + KK F+ P ++G+ Y+N L + MFD +
Sbjct: 1 MVVRQYQEELKYLEKVNDTCWKI---KKGFQ--PNMKVEGVFYVNNTLERLMFDELRNAC 55
Query: 427 -PVGVGSKGIIPMNARDLEEALEMGMDW------SLREGY-------------------- 459
P VG G +P + A G+ W + GY
Sbjct: 56 RPGAVG--GFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMKDPKSIVS 113
Query: 460 ------------------IWAEDKEHF-ERLAQSMFDHIPVGVGSKGIIPMNARDLEEAL 500
++ ED + E+LAQSMFDHIPVGVGSKGIIPMNA DLEEAL
Sbjct: 114 PGGVGFDINCGVRLLRTNLFEEDVQPVKEQLAQSMFDHIPVGVGSKGIIPMNAHDLEEAL 173
Query: 501 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SKVSMRAKKRGLPQ+
Sbjct: 174 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQL 220
>gi|156544293|ref|XP_001607419.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Nasonia vitripennis]
Length = 506
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/478 (59%), Positives = 324/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN+ LEKLML+EL+N+CRPG VGGF LPG+
Sbjct: 31 MKVEGVFYVNNTLEKLMLDELKNACRPGAVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPKSIISPGGVGFDINC-GVRLLRTNLFEKDVQPVKEQLAQSMF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+V+EIY+K AASKMGIE+ GQVCVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYNKSAASKMGIEEKGQVCVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALVQMEKAMKRDNIE NDRQLACA INS K+ A A F +
Sbjct: 269 QVATDALVQMEKAMKRDNIEVNDRQLACAHINSQEGQDYLKSMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQFN +PDDLDMHVIYDVSHN+AK EEHMVDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFNMSPDDLDMHVIYDVSHNVAKVEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFGSTCHGAGRALSRAKSRR LDYQ+
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMNETFGSTCHGAGRALSRAKSRRKLDYQK 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VLNKLE GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 449 VLNKLEDMGISIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKCIKLRPIAVIKG 506
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVSMRAKKRGLPQ+
Sbjct: 202 QADPSKVSMRAKKRGLPQL 220
>gi|195398107|ref|XP_002057666.1| GJ18257 [Drosophila virilis]
gi|194141320|gb|EDW57739.1| GJ18257 [Drosophila virilis]
Length = 506
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/478 (58%), Positives = 328/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEGVF+VN LEKLMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGVFYVNSRLEKLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLSADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDG+++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGRERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY+E
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTERGMQETFGSTCHGAGRALSRAKSRRNLDYKE 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KLE GI+IRVASPKLVMEEAPE+YK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLEQIGIAIRVASPKLVMEEAPEAYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ADP+KVSMRAKKRGLPQ+
Sbjct: 202 SADPAKVSMRAKKRGLPQL 220
>gi|332028269|gb|EGI68316.1| UPF0027 protein C22orf28 [Acromyrmex echinatior]
Length = 506
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN+ LE+LM +ELRN+CRPG VGGF LPG+
Sbjct: 31 MKVEGVFYVNNTLERLMFDELRNACRPGAVGGFLPGMKQIANVAALPGIVWRSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + +P + L+ +
Sbjct: 91 SGYGFAIGNMAAFDMDDPKSIVSPGGVGFDINCGVRLLRTNLFERDVLPVKEQLAQSMFD 150
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 151 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLNADPSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRDNIETNDRQLACA I S + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQFN++PDDLDMHVIYDVSHNIAK EEH+V+GKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIEEHIVEGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM+ETFGSTCHGAGRALSRAKSRRNLDY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMKETFGSTCHGAGRALSRAKSRRNLDYMQ 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE GISIRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 449 VLEKLEQLGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKCIKLRPIAVIKG 506
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/79 (97%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVSMRAKKRGLPQ+
Sbjct: 202 NADPSKVSMRAKKRGLPQL 220
>gi|194879577|ref|XP_001974258.1| GG21180 [Drosophila erecta]
gi|190657445|gb|EDV54658.1| GG21180 [Drosophila erecta]
Length = 506
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDDPLSIVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY+E
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKE 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|48112647|ref|XP_393151.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Apis mellifera]
Length = 506
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/478 (58%), Positives = 323/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN+ LE+LM +EL+N+CRPG VGGF LPG+
Sbjct: 31 MKVEGVFYVNNTLERLMFDELKNACRPGAVGGFLPGMKQIANVAALPGIVWRSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPKSIVSPGGVGFDINC-GVRLLRTNLFEEDVQPVKEQLAQSMF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALVQMEKAMKRDNIETNDRQLACA I S K+ A A F +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQF +PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFRLSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++ M+ETFGSTCHGAGRALSRAKSRRNLDY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTDQAMKETFGSTCHGAGRALSRAKSRRNLDYTD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE QGISIRVASPKLVMEEAPESYKNVTDVV+TCHA GIS+K KLRP+AVIKG
Sbjct: 449 VLEKLERQGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISRKCIKLRPIAVIKG 506
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 127/227 (55%), Gaps = 58/227 (25%)
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI-YLNERLAQSMFDHI---- 426
+V+ + E K + + DTC + KK F+ P ++G+ Y+N L + MFD +
Sbjct: 1 MVVRQYQEELKFLEKITDTCWKI---KKGFQ--PNMKVEGVFYVNNTLERLMFDELKNAC 55
Query: 427 -PVGVGSKGIIPMNARDLEEALEMGMDW------SLREGY-------------------- 459
P VG G +P + A G+ W + GY
Sbjct: 56 RPGAVG--GFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVS 113
Query: 460 ------------------IWAEDKEHF-ERLAQSMFDHIPVGVGSKGIIPMNARDLEEAL 500
++ ED + E+LAQSMFDHIPVGVGSKGIIPMNARDLEEAL
Sbjct: 114 PGGVGFDINCGVRLLRTNLFEEDVQPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEAL 173
Query: 501 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SKVSMRAKKRGLPQ+
Sbjct: 174 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQL 220
>gi|195432826|ref|XP_002064417.1| GK23837 [Drosophila willistoni]
gi|194160502|gb|EDW75403.1| GK23837 [Drosophila willistoni]
Length = 506
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/478 (58%), Positives = 326/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN+ LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNERLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDNPLSVVSPGGVGFDINC-GVRLLRTNLYERDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK+K LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKEKKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GM ETFGSTCHGAGRALSRAKSRRNLDY+E
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMHETFGSTCHGAGRALSRAKSRRNLDYKE 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GIS+K K+RP+AVIKG
Sbjct: 449 VLEKLEQTGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISRKCIKMRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|125985006|ref|XP_001356267.1| GA22169 [Drosophila pseudoobscura pseudoobscura]
gi|195164656|ref|XP_002023162.1| GL21208 [Drosophila persimilis]
gi|54644589|gb|EAL33330.1| GA22169 [Drosophila pseudoobscura pseudoobscura]
gi|194105247|gb|EDW27290.1| GL21208 [Drosophila persimilis]
Length = 506
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDNPLSIVSPGGVGFDINC-GVRLLRTNLFEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY+E
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKE 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KLE GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLEQIGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|357620999|gb|EHJ72985.1| hypothetical protein KGM_11149 [Danaus plexippus]
Length = 506
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/480 (58%), Positives = 325/480 (67%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEGVF+VN+ LE+LMLEEL+NSCRPGM GGF LPG+
Sbjct: 31 MNVEGVFYVNNTLERLMLEELKNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV + Q L D
Sbjct: 91 SGYGFAIGNMAAFDMSNPKSIVSPGGVGFDINCGVRLLRTNLHEKDVQPIKEQLAQSLFD 150
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 151 HI--PVGVGSKGIIPMNARDMEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLNADPSK 207
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + + RG Q+ T AGNHYAEIQ+VDEIYDK+ A KMG+E +GQVCVMIHSGSRGF
Sbjct: 208 VSLRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKFGAGKMGLERIGQVCVMIHSGSRGF 266
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH----- 232
GHQVATDALVQMEKAMKRD IE NDRQLACARINS + + + K + ++
Sbjct: 267 GHQVATDALVQMEKAMKRDQIEVNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMT 326
Query: 233 -VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAKQF +PDDLDMHVIYDVSHNIAK EEH+VDGK KTLLVHRKGSTRAFPPHH
Sbjct: 327 FLTRQAFAKQFKMSPDDLDMHVIYDVSHNIAKMEEHIVDGKIKTLLVHRKGSTRAFPPHH 386
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGG+MGTCSYVLTGT +GM ETFGSTCHGAGRALSRAKSRRN+DY
Sbjct: 387 PLIPVDYQLTGQPVLIGGSMGTCSYVLTGTPQGMTETFGSTCHGAGRALSRAKSRRNIDY 446
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EVL KLES GISIRVASPKLVMEEAPESYKNVTDVVDTCHA GISKKT KLRP+AVIKG
Sbjct: 447 KEVLGKLESLGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKTVKLRPIAVIKG 506
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARD+EEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS+RAKKRGLPQ+
Sbjct: 202 NADPSKVSLRAKKRGLPQL 220
>gi|380030337|ref|XP_003698805.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
[Apis florea]
Length = 506
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/478 (58%), Positives = 323/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN+ LE+LM +EL+N+CRPG VGGF LPG+
Sbjct: 31 MKVEGVFYVNNTLERLMFDELKNACRPGAVGGFLPGXEQIANVAALPGIVWRSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPKSIVSPGGVGFDINC-GVRLLRTNLFEEDVQPVKEQLAQSMF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALVQMEKAMKRDNIETNDRQLACA I S K+ A A F +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQF +PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFRLSPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++ M+ETFGSTCHGAGRALSRAKSRRNLDY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTDQAMKETFGSTCHGAGRALSRAKSRRNLDYTD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE QGISIRVASPKLVMEEAPESYKNVTDVV+TCHA GIS+K KLRP+AVIKG
Sbjct: 449 VLEKLERQGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISRKCIKLRPIAVIKG 506
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 127/227 (55%), Gaps = 58/227 (25%)
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI-YLNERLAQSMFDHI---- 426
+V+ + E K + + DTC + KK F+ P ++G+ Y+N L + MFD +
Sbjct: 1 MVVRQYQEELKFLEKITDTCWKI---KKGFQ--PNMKVEGVFYVNNTLERLMFDELKNAC 55
Query: 427 -PVGVGSKGIIPMNARDLEEALEMGMDW------SLREGY-------------------- 459
P VG G +P + A G+ W + GY
Sbjct: 56 RPGAVG--GFLPGXEQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVS 113
Query: 460 ------------------IWAEDKEHF-ERLAQSMFDHIPVGVGSKGIIPMNARDLEEAL 500
++ ED + E+LAQSMFDHIPVGVGSKGIIPMNARDLEEAL
Sbjct: 114 PGGVGFDINCGVRLLRTNLFEEDVQPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEAL 173
Query: 501 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SKVSMRAKKRGLPQ+
Sbjct: 174 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQL 220
>gi|193592101|ref|XP_001947227.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Acyrthosiphon pisum]
Length = 506
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 276/478 (57%), Positives = 321/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VN LEKLMLEEL+N+CRPGM+GGF LPG+
Sbjct: 31 MRVEGVFYVNKFLEKLMLEELQNACRPGMIGGFLPGVKQIANVAALPGIVHKSIGLPDVH 90
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPSTQWLSDNT 72
I N+AA PG VG + DV + S
Sbjct: 91 SGYGFAIGNMAAFDMDDPQSIVSPGGVGFDINCGVRLLRTNLFEKDVQPIKEQLAQSMFD 150
Query: 73 MRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 151 HIPVGVGSKGIIPMNANDLEEALEMGMDWSLREGY-AWAEDKEHCEENGRMLNADSSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDE+YDKWAA KMGIE+VGQVCVMIHSGSRGFGH
Sbjct: 210 MRARKRGL-PQLGTLGAGNHYAEIQVVDEVYDKWAAKKMGIENVGQVCVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDAL++MEKAM RD IE NDRQLACARINSN+ + + K + + ++ +
Sbjct: 269 QVATDALLEMEKAMARDKIEVNDRQLACARINSNEGQNYLKAMSAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQF TPDDLDMHVIYDVSHNIAK E+H +DGK K LLVHRKGSTRAFPP+HPL
Sbjct: 329 ARQAFAKQFKLTPDDLDMHVIYDVSHNIAKMEQHYIDGKPKHLLVHRKGSTRAFPPYHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFGSTCHGAGRALSRAKSRRN+DY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMNETFGSTCHGAGRALSRAKSRRNIDYND 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KL+ QGI+IRVASPKLVMEEAPESYKNVTDVVDTCH GISKKT KLRP+AVIKG
Sbjct: 449 VLEKLQKQGIAIRVASPKLVMEEAPESYKNVTDVVDTCHEAGISKKTVKLRPIAVIKG 506
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY WAEDKEHCEE GRML
Sbjct: 142 EQLAQSMFDHIPVGVGSKGIIPMNANDLEEALEMGMDWSLREGYAWAEDKEHCEENGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NAD SKVSMRA+KRGLPQ+
Sbjct: 202 NADSSKVSMRARKRGLPQL 220
>gi|24585217|ref|NP_609965.1| CG9987 [Drosophila melanogaster]
gi|74948048|sp|Q9VIW7.1|RTCB_DROME RecName: Full=tRNA-splicing ligase RtcB homolog
gi|7298579|gb|AAF53797.1| CG9987 [Drosophila melanogaster]
gi|21430790|gb|AAM51073.1| SD15934p [Drosophila melanogaster]
gi|220960516|gb|ACL92794.1| CG9987-PA [synthetic construct]
Length = 506
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 279/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY++
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|195345091|ref|XP_002039109.1| GM17346 [Drosophila sechellia]
gi|194134239|gb|EDW55755.1| GM17346 [Drosophila sechellia]
Length = 506
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 279/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY++
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|195484451|ref|XP_002090700.1| GE13253 [Drosophila yakuba]
gi|194176801|gb|EDW90412.1| GE13253 [Drosophila yakuba]
Length = 506
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 279/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY+E
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKE 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|350402329|ref|XP_003486446.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Bombus impatiens]
Length = 506
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 278/478 (58%), Positives = 325/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN+ LE+LM +EL+N+CRPG VGGF LPG+
Sbjct: 31 MKVEGVFYVNNTLERLMFDELKNACRPGAVGGFLPGMKQIANVAALPGIVWKSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + +P + L+ +
Sbjct: 91 SGYGFAIGNMAAFDMNDPKSIVSPGGVGFDINCGVRLLRTNLFEEDVLPVKEQLAQSMFD 150
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 151 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLNADSSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VD+IYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDQIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRDNIETNDRQLACA I S + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQF +PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFRQSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++ M+ETFGSTCHGAGRALSRAKSRRNLDY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTDQAMKETFGSTCHGAGRALSRAKSRRNLDYTD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE QGISIRVASPKLVMEEAPESYKNVTDVVDTCHA GIS+K KLRP+AVIKG
Sbjct: 449 VLEKLERQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISRKCIKLRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NAD SKVSMRAKKRGLPQ+
Sbjct: 202 NADSSKVSMRAKKRGLPQL 220
>gi|340711363|ref|XP_003394246.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Bombus terrestris]
Length = 506
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 278/478 (58%), Positives = 325/478 (67%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEGVF+VN+ LE+LM +EL+N+CRPG VGGF LPG+
Sbjct: 31 MKVEGVFYVNNTLERLMFDELKNACRPGAVGGFLPGMKQIANVAALPGIVWRSVGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPKSIVSPGGVGFDINC-GVRLLRTNLFEEDVSPVKEQLAQSMF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VD+IYDKWAA KMGIE+ GQ+CVMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDQIYDKWAACKMGIEEKGQICVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRDNIETNDRQLACA I S + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQF +PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 SRQAFAKQFRQSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++ M+ETFGSTCHGAGRALSRAKSRRNLDY +
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTDQAMKETFGSTCHGAGRALSRAKSRRNLDYTD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KLE QGISIRVASPKLVMEEAPESYKNVTDVVDTCHA GIS+K KLRP+AVIKG
Sbjct: 449 VLEKLERQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISRKCIKLRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML
Sbjct: 142 EQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NAD SKVSMRAKKRGLPQ+
Sbjct: 202 NADSSKVSMRAKKRGLPQL 220
>gi|195115184|ref|XP_002002144.1| GI14026 [Drosophila mojavensis]
gi|193912719|gb|EDW11586.1| GI14026 [Drosophila mojavensis]
Length = 506
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEGVF+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGVFYVNSRLEQLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDDPLSVVSPGGVGFDINC-GVRLLRTNLFEKDVQPLKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVEMEKAMKRDKIETNDRQLACARINSPEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F TTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFKTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY++
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTERGMQETFGSTCHGAGRALSRAKSRRNLDYKD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|194762188|ref|XP_001963238.1| GF14042 [Drosophila ananassae]
gi|190616935|gb|EDV32459.1| GF14042 [Drosophila ananassae]
Length = 506
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/478 (58%), Positives = 326/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDDPLSVVSPGGVGFDINC-GVRLLRTNLYERDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRN+DY+E
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNIDYKE 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLEKLDQIGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>gi|195580159|ref|XP_002079923.1| GD24205 [Drosophila simulans]
gi|194191932|gb|EDX05508.1| GD24205 [Drosophila simulans]
Length = 506
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 277/477 (58%), Positives = 325/477 (68%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQV-----CVMI 122
P+ +G+ G + ++E + WA K E+ G++ +
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+G Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGHQ
Sbjct: 210 MRAKKGGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGHQ 269
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------VI 234
VATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 270 VATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFLT 329
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLVHRKGSTRAFPPHHPLI
Sbjct: 330 RQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPLI 389
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY++V
Sbjct: 390 PVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKDV 449
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 450 LDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKK GLPQ+
Sbjct: 202 NADPAKVSMRAKKGGLPQL 220
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 4/80 (5%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEH E +
Sbjct: 140 VKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGR 199
Query: 474 SMFDHIPVGV---GSKGIIP 490
M + P V KG +P
Sbjct: 200 -MLNADPAKVSMRAKKGGLP 218
>gi|195049922|ref|XP_001992790.1| GH13449 [Drosophila grimshawi]
gi|193899849|gb|EDV98715.1| GH13449 [Drosophila grimshawi]
Length = 506
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 275/478 (57%), Positives = 328/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEGVF+VN LE+L+L+EL+NSCRPG +GGF LPG+
Sbjct: 31 MNVEGVFYVNSRLEQLILDELKNSCRPGAIGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMDDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPIKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGVIPMNARDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLSADPGKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVEMEKAMKRDQIETNDRQLACARINSVEGQNYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSR+KSRRNLDY+E
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTERGMQETFGSTCHGAGRALSRSKSRRNLDYKE 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KLE GI+IRVASPKLVMEEAPE+YK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLEQIGIAIRVASPKLVMEEAPEAYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 77/79 (97%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPMNARDLEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGVIPMNARDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ADP KVSMRAKKRGLPQ+
Sbjct: 202 SADPGKVSMRAKKRGLPQL 220
>gi|170037353|ref|XP_001846523.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|327488449|sp|B0WCT9.1|RTCB1_CULQU RecName: Full=tRNA-splicing ligase RtcB homolog 1
gi|167880432|gb|EDS43815.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 506
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 272/479 (56%), Positives = 323/479 (67%), Gaps = 71/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LEKLM +ELRNSCRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSRLEKLMFDELRNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMSDPTSIVSPGGVGFDINC-GVRLLRTNLFEKDVKPVQEQLAQSLF 149
Query: 80 KRSPLTLGA------GNHYAEIQI-------VDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ H E + + E Y WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLTADPSKV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 209 SMRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + +
Sbjct: 268 HQVATDALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSAAANFAWVNRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLVHRKGSTRAFPPHHP
Sbjct: 328 LTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLVHRKGSTRAFPPHHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQLTGQPVL+GG+MGTCS+VLTGTEKGM ETFGSTCHGAGR+LSRAKSRRNLDY+
Sbjct: 388 LIPVDYQLTGQPVLVGGSMGTCSFVLTGTEKGMAETFGSTCHGAGRSLSRAKSRRNLDYK 447
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL LE++GISIRVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 448 DVLRDLEAKGISIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISSKCIKLRPIAVIKG 506
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 81/93 (87%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+W
Sbjct: 128 LRTNLFEKDVKPVQEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML ADPSKVSMRAKKRGLPQ+
Sbjct: 188 AEDKEHCEEYGRMLTADPSKVSMRAKKRGLPQL 220
>gi|312374780|gb|EFR22263.1| hypothetical protein AND_15504 [Anopheles darlingi]
Length = 506
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/479 (56%), Positives = 322/479 (67%), Gaps = 71/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVK---------- 38
MNV+GVF+ N LEKLM EELRN+CRPGM GGFL PG+
Sbjct: 31 MNVDGVFYANSRLEKLMFEELRNACRPGMSGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNT----MRSSNIW 79
I N+AA PG VG + V + + + D T + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPTSIVSPGGVGFDINC-GVRLLRTNLFEKDVTPVKEQLAQSLF 149
Query: 80 KRSPLTLGA------GNHYAEIQI-------VDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ H E + + E Y WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLNADPSKV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 209 SLRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + +
Sbjct: 268 HQVATDALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSAAANFAWVNRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLVHRKGSTRAFPPHHP
Sbjct: 328 LTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLVHRKGSTRAFPPHHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQLTGQPVL+GG+MGTCS+VLTGTEKGM ETFGSTCHGAGR+LSRAKSRR LDY+
Sbjct: 388 LIPVDYQLTGQPVLVGGSMGTCSFVLTGTEKGMVETFGSTCHGAGRSLSRAKSRRQLDYK 447
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL LE +GISIRVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 448 DVLRDLEEKGISIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISNKAIKLRPIAVIKG 506
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS+RAKKRGLPQ+
Sbjct: 202 NADPSKVSLRAKKRGLPQL 220
>gi|58389845|ref|XP_317316.2| AGAP008147-PA [Anopheles gambiae str. PEST]
gi|74802307|sp|Q7Q412.2|RTCB_ANOGA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|55237536|gb|EAA12412.2| AGAP008147-PA [Anopheles gambiae str. PEST]
Length = 506
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 320/480 (66%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LEKLM +ELRN+CRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSRLEKLMFDELRNACRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 91 SGYGFAIGNMAAFDMSDPTSIVSPGGVGFDINCGVRLLRTNLFEKDVQPVKEQLAQSLFD 150
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 151 HI--PVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLNADPSK 207
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGF
Sbjct: 208 VSLRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGF 266
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDM 231
GHQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + +
Sbjct: 267 GHQVATDALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSAAANFAWVNRSSMT 326
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMV+G+ K LLVHRKGSTRAFPPHH
Sbjct: 327 FLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVNGRPKQLLVHRKGSTRAFPPHH 386
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVL+GG+MGTCS+VLTGTE GM ETFGSTCHGAGR+LSRAKSRRNLDY
Sbjct: 387 PLIPVDYQLTGQPVLVGGSMGTCSFVLTGTETGMVETFGSTCHGAGRSLSRAKSRRNLDY 446
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++VL LE +GISIRVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 447 KDVLRDLEEKGISIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISNKAIKLRPIAVIKG 506
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS+RAKKRGLPQ+
Sbjct: 202 NADPSKVSLRAKKRGLPQL 220
>gi|432964873|ref|XP_004087012.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Oryzias latipes]
Length = 505
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 275/480 (57%), Positives = 315/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG+F+VN+ LEKLM EELRN+CR G VGGFLP +KQ
Sbjct: 30 MQVEGIFYVNEPLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVNRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGLP-----------DVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNMAAFDMSDPNAVVSPGGVGFDINCGVRLLRTNLDERDVQPVKEQLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRDNI NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDNITVNDRQLACARITSQEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDGKQ+TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEEHIVDGKQRTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GIS+K KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISRKAIKLRPIAVIKG 505
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS +AKKRGLPQ+
Sbjct: 201 QADPNKVSSKAKKRGLPQL 219
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPNKVSSK 210
>gi|157135852|ref|XP_001656701.1| hypothetical protein AaeL_AAEL003336 [Aedes aegypti]
gi|122095160|sp|Q17FP1.1|RTCB_AEDAE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|108881158|gb|EAT45383.1| AAEL003336-PA [Aedes aegypti]
Length = 506
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/479 (56%), Positives = 322/479 (67%), Gaps = 71/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LE+LM +ELRNSCRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSKLERLMFDELRNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMSNPVSIVSPGGVGFDINC-GVRLLRTNLFEKDVKPVQEQLAQSLF 149
Query: 80 KRSPLTLGA------GNHYAEIQI-------VDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ H E + + E Y WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLNADPSKV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 209 SMRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKFAASKMGIEELGQICVMIHSGSRGFG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + ++
Sbjct: 268 HQVATDALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMAAAANFAWVNRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLVHRKGSTRA PPHHP
Sbjct: 328 LTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLVHRKGSTRALPPHHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQLTGQPVLIGG+MGTCS+VLTGTEKGM TFGSTCHGAGR+LSRAKSRRNLDY+
Sbjct: 388 LIPVDYQLTGQPVLIGGSMGTCSFVLTGTEKGMAATFGSTCHGAGRSLSRAKSRRNLDYK 447
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL LE++GI+IRVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 448 DVLRDLEAKGIAIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISAKAIKLRPIAVIKG 506
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 82/93 (88%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+W
Sbjct: 128 LRTNLFEKDVKPVQEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ+
Sbjct: 188 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQL 220
>gi|47085843|ref|NP_998268.1| tRNA-splicing ligase RtcB homolog [Danio rerio]
gi|82186036|sp|Q6NZS4.1|RTCB_DANRE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|42406383|gb|AAH65987.1| Zgc:76871 [Danio rerio]
Length = 505
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/480 (57%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VND LEKLM EELRN+CR G GGFLP +KQ
Sbjct: 30 MLVEGVFYVNDPLEKLMFEELRNACRGGGFGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGLP-----------DVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNMAAFDMENPDAVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF+K F+TTPDDLDMHVIYDVSHNIAK EEHMVDG+QKTLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS +AKKRGLPQ+
Sbjct: 201 QADPNKVSSKAKKRGLPQL 219
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPNKVSSK 210
>gi|387916116|gb|AFK11667.1| tRNA-splicing ligase RtcB-like protein [Callorhinchus milii]
Length = 505
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 275/480 (57%), Positives = 315/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VN+ LEKLM EELRNSCR G VGGFLP +KQ
Sbjct: 30 MQVEGVFYVNEPLEKLMFEELRNSCRGGGVGGFLPAMKQIGNVAALPGIIHKSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGLP-----------DVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPQSVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPSK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI+D++AA KMGI+ GQVCVMIH GSRG
Sbjct: 207 VSSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIFDEYAARKMGIDHKGQVCVMIHCGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARINS + + + K D
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARINSQEGQDYLKGMAAAGDYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK F TTPDDLDMH+IYDVSHNIAK EEH+VDGKQKTLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFGTTPDDLDMHMIYDVSHNIAKVEEHVVDGKQKTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLSDMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS +AKKRGLPQ+
Sbjct: 201 QADPSKVSSKAKKRGLPQL 219
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPSKVSSK 210
>gi|348522556|ref|XP_003448790.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Oreochromis
niloticus]
Length = 505
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/480 (57%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VN+ LEKLM EELRN+CR G VGGFLP +KQ
Sbjct: 30 MQVEGVFYVNEPLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVNKSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGLP-----------DVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNMAAFDMDDPNAVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKITVNDRQLACARITSPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDGKQ+TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEEHIVDGKQRTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKAIKLRPIAVIKG 505
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS +AKKRGLPQ+
Sbjct: 201 QADPNKVSSKAKKRGLPQL 219
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPNKVSSK 210
>gi|393911595|gb|EJD76380.1| hypothetical protein LOAG_16672 [Loa loa]
Length = 505
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 268/478 (56%), Positives = 313/478 (65%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
MNVEG F+VN LEKLM EELRNSCR +GGFLP V+Q
Sbjct: 30 MNVEGRFYVNRALEKLMFEELRNSCRSDGIGGFLPAVRQVGNVAALPAIVNASVGLPDIH 89
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + P + L+ +
Sbjct: 90 SGYGFAIGNIAAFDVSDPEAVVSPGGVGFDINCGVRLIRTNLSEKDVQPLKEQLAQSLFD 149
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + +GA +++ + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGIIPIGALQFEECLEMGMDWTLREGY-SWAEDKEHCEEYGRMLQADAAKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHY E+Q+VDEIYD++AAS+MGI+ +GQVCVMIH GSRG GH
Sbjct: 209 PRAKKRGL-PQLGTLGAGNHYGEVQVVDEIYDEYAASRMGIDRLGQVCVMIHCGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATD+LV MEKAMKRDNI NDRQLACARINS K A A F
Sbjct: 268 QVATDSLVVMEKAMKRDNIIVNDRQLACARINSVEGQDYLKGMAAAANFAWVNRSCMTFC 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNT+PDDLDMHVIYDVSHNIAK EEH+VDG+ K L VHRKGSTRAFPPHHPL
Sbjct: 328 ARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLVDGRPKQLCVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETF +TCHGAGR+LSRAKSRRN+D+QE
Sbjct: 388 IPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGMDETFATTCHGAGRSLSRAKSRRNIDFQE 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VLN++++ GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKKT KLRP+AVIKG
Sbjct: 448 VLNQMQAMGISIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKTVKLRPIAVIKG 505
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 70/79 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIP+ A EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGIIPIGALQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +KVS RAKKRGLPQ+
Sbjct: 201 QADAAKVSPRAKKRGLPQL 219
>gi|170593115|ref|XP_001901310.1| Hypothetical UPF0027 protein F16A11.2 in chromosome I [Brugia
malayi]
gi|327488436|sp|A8QC60.1|RTCB_BRUMA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|158591377|gb|EDP29990.1| Hypothetical UPF0027 protein F16A11.2 in chromosome I, putative
[Brugia malayi]
Length = 505
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 268/480 (55%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNVEG F+VN LEKLM EELRN+CR +GGFLP V+QI
Sbjct: 30 MNVEGRFYVNTALEKLMFEELRNACRLDGIGGFLPAVRQIGNVAALPAIVNASIGLPDIH 89
Query: 42 --------NVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNIAAFDVSDPDAVVSPGGVGFDINCGVRLIRTNLSEKDVQPVKEQLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGIIPIGAQQFEECLEMGMDWTLREGY-SWAEDKEHCEEYGRMLQADAAK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHY E+Q++DEIYD++AAS+MGI+ +GQVC+MIH GSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYGEVQVIDEIYDEYAASRMGIDRLGQVCIMIHCGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATD+LV MEKAMKRDNI NDRQLACARINS K A A F
Sbjct: 266 GHQVATDSLVVMEKAMKRDNIIVNDRQLACARINSMEGQDYLKGMAAAANFAWVNRSCMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
AFAK FNT+PDDLDMHVIYDVSHNIAK EEH+++G+ K L VHRKGSTRAFPPHH
Sbjct: 326 FCARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLINGRPKQLCVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETF +TCHGAGRALSRAKSRRN+D+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMNETFATTCHGAGRALSRAKSRRNIDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QEVLNK+++ GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKK+ KLRP+AVIKG
Sbjct: 446 QEVLNKMQAMGISIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKSVKLRPIAVIKG 505
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +KVS RAKKRGLPQ+
Sbjct: 201 QADAAKVSPRAKKRGLPQL 219
>gi|156404055|ref|XP_001640223.1| predicted protein [Nematostella vectensis]
gi|327488441|sp|A7RKF6.1|RTCB_NEMVE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|156227356|gb|EDO48160.1| predicted protein [Nematostella vectensis]
Length = 505
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 272/480 (56%), Positives = 312/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG F++N+HLEKLM +ELR+ C +GGFLPGVKQ
Sbjct: 30 MKVEGKFYINEHLEKLMFDELRHWCGAQGIGGFLPGVKQIANVAALPGIVGYSVGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNMAAFDMSLPEAVVSPGGVGFDINCGVRLLRTNLEEKDVQPVKERLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEDALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADSAK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSAKAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNEFAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD IE NDRQLACA I S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIEVNDRQLACAHIKSPEGQDYLKGMAGAANYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FN+TPDDLDMH+IYDVSHNIAK EEH +DG+Q+ LLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNSTPDDLDMHLIYDVSHNIAKVEEHFLDGRQRQLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM ETFG+TCHGAGRALSRAKSRRNLDY
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMTETFGTTCHGAGRALSRAKSRRNLDY 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL L +GISIRVASPKLVMEEAPESYKNVTDVVDTCH+ GISKK KLRP+AVIKG
Sbjct: 446 QDVLENLAQKGISIRVASPKLVMEEAPESYKNVTDVVDTCHSAGISKKAIKLRPIAVIKG 505
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 74/79 (93%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
ERLAQS+FDHIPVGVGSKG+IPM A+DLE+ALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 ERLAQSLFDHIPVGVGSKGVIPMGAKDLEDALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +KVS +AKKRGLPQ+
Sbjct: 201 QADSAKVSAKAKKRGLPQL 219
>gi|74198421|dbj|BAE39694.1| unnamed protein product [Mus musculus]
Length = 505
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 273/480 (56%), Positives = 315/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQ
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + +T+ A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVITMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+I MNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVITMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|327272404|ref|XP_003220975.1| PREDICTED: UPF0027 protein C22orf28 homolog [Anolis carolinensis]
Length = 505
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/478 (56%), Positives = 315/478 (65%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVKQ--------- 39
MNVEGVF+VND LEKLM EELRNSCR G GGFL PG+
Sbjct: 30 MNVEGVFYVNDPLEKLMFEELRNSCRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + P + L+ +
Sbjct: 90 SGYGFAIGNMAAFDMDDPEAVVSPGGVGFDINCGVRLLRTNLDECDVQPVKEQLAQSMFD 149
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VD+IY+++AA KMGI+ GQ+CVMIHSGSRG GH
Sbjct: 209 ARAKKRGL-PQLGTLGAGNHYAEIQVVDDIYNEYAAKKMGIDHKGQICVMIHSGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV MEKAMKRD I NDRQLACARI+S K A A + +
Sbjct: 268 QVATDALVAMEKAMKRDKIIVNDRQLACARISSQEGQDYLKGMAAAGNYAWVNRSSMTFL 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPL
Sbjct: 328 TRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
I VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+
Sbjct: 388 IAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMNETFGTTCHGAGRALSRAKSRRNLDFQD 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 448 VLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG 505
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|71895823|ref|NP_001025674.1| tRNA-splicing ligase RtcB homolog [Xenopus (Silurana) tropicalis]
gi|82177958|sp|Q561P3.1|RTCB_XENTR RecName: Full=tRNA-splicing ligase RtcB homolog
gi|62531233|gb|AAH93459.1| MGC97634 protein [Xenopus (Silurana) tropicalis]
Length = 505
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 315/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VND LEKLM EELRN+ R G GGFLP +KQ
Sbjct: 30 MQVEGVFYVNDPLEKLMFEELRNASRGGAAGGFLPAMKQIGNVAALPGIIHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMDNPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPSK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAE+Q+VD+IYD++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSKAKKRGL-PQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI+S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK+KTLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADLGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS +AKKRGLPQ+
Sbjct: 201 QADPSKVSSKAKKRGLPQL 219
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPSKVSSK 210
>gi|402593909|gb|EJW87836.1| hypothetical protein WUBG_01253 [Wuchereria bancrofti]
Length = 505
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 262/478 (54%), Positives = 313/478 (65%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNVEG F+VN LEKLM EELRN+C+ +GGFLP V+QI
Sbjct: 30 MNVEGRFYVNTALEKLMFEELRNACKLDGIGGFLPAVRQIGNVAALPAIVNASIGLPDIH 89
Query: 42 --------NVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
N+AA PG VG + L + P + L+ +
Sbjct: 90 SGYGFAIGNIAAFDVSDPDAIVSPGGVGFDINCGVRLIRTNLSEKDVQPVKEQLAQSLFN 149
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + +GA +++ + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYS-WAEDKEHCEEYGRMLQADAAKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHY E+Q++DEIYD++AAS+MGI+ +GQVC+MIH GSRG GH
Sbjct: 209 PRAKKRGL-PQLGTLGAGNHYGEVQVIDEIYDEYAASRMGIDRLGQVCIMIHCGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATD+LV MEKAMKRD+I NDRQLACARINS K A A F
Sbjct: 268 QVATDSLVVMEKAMKRDSIIVNDRQLACARINSMEGQDYLKGMAAAANFAWVNRSCMTFC 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNT+PDDLDMHVIYDVSHNIAK EEH+++G+ K L VHRKGSTRAFPPHHPL
Sbjct: 328 ARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLINGRPKQLCVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETF +TCHGAGRALSRAKSRRN+D+QE
Sbjct: 388 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMNETFATTCHGAGRALSRAKSRRNIDFQE 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VLN++++ GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKK+ KLRP+AVIKG
Sbjct: 448 VLNRMQAMGISIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKSVKLRPIAVIKG 505
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+F+HIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFNHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +KVS RAKKRGLPQ+
Sbjct: 201 QADAAKVSPRAKKRGLPQL 219
>gi|74182485|dbj|BAE42866.1| unnamed protein product [Mus musculus]
Length = 505
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/478 (56%), Positives = 315/478 (65%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
+ VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQ
Sbjct: 30 VQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + VH + + SD + ++
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINC-GVHLLRTNLDESDVQPVKEQLAQAMF 148
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 149 DHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GH
Sbjct: 209 PRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV MEKAMKRD I NDRQLACARI S K A A + +
Sbjct: 268 QVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFL 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPL
Sbjct: 328 TRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
I VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+
Sbjct: 388 IAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQD 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 448 VLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS RAKKRGLPQ+
Sbjct: 201 QADPSKVSPRAKKRGLPQL 219
>gi|410925908|ref|XP_003976421.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Takifugu rubripes]
Length = 504
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 275/480 (57%), Positives = 313/480 (65%), Gaps = 74/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG F+VN+ LEKLM EELRN+CR G VGGFLP +KQ
Sbjct: 30 MQVEGNFYVNEALEKLMFEELRNACRGG-VGGFLPAMKQIGNVAALPGIVHKSIGLPDVH 88
Query: 40 ------IANVAAL----------PGIVGRSVGLP-----------DVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 89 SGYGFAIGNMAAFDMNDPAAVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFD 148
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 149 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 205
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG
Sbjct: 206 VSSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGL 264
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 265 GHQVATDALVAMEKAMKRDKICVNDRQLACARITSPEGQDYLKGMAAAGNYAWVNRSSMT 324
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLVHRKGSTRAFPPHH
Sbjct: 325 FLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEEHVVDGKQKTLLVHRKGSTRAFPPHH 384
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 385 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 444
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL++L GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 445 QDVLDRLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 504
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 140 EQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 199
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS +AKKRGLPQ+
Sbjct: 200 QADPNKVSSKAKKRGLPQL 218
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 138 VKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 197
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 198 -MLQADPNKVSSK 209
>gi|148236109|ref|NP_001090369.1| uncharacterized protein LOC779280 [Xenopus laevis]
gi|116063456|gb|AAI23249.1| MGC154502 protein [Xenopus laevis]
Length = 505
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 267/478 (55%), Positives = 314/478 (65%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VND LEKLM EELRN+ R G GGFLP +KQ
Sbjct: 30 MQVEGVFYVNDPLEKLMFEELRNASRGGAAGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + P + L+ +
Sbjct: 90 SGYGFAIGNMAAFDMENPDAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQSMFD 149
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + +GA + +++ + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPSKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAE+Q+VDEIYD++AA KMGI+ GQVCVMIHSGSRG GH
Sbjct: 209 SKAKKRGL-PQLGTLGAGNHYAEVQVVDEIYDEYAAKKMGIDHKGQVCVMIHSGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV MEKAMKRD I NDRQLACARI+S+ K A A + +
Sbjct: 268 QVATDALVAMEKAMKRDKITVNDRQLACARISSDEGQDYLKGMAAAGNYAWVNRSSMTFL 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AF+K FNT PDDLDMHVIYDVSHNIAK E+H+V+GK+ TLLVHRKG+TRAFPPHHPL
Sbjct: 328 TRQAFSKVFNTPPDDLDMHVIYDVSHNIAKVEQHVVEGKEMTLLVHRKGATRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETFG+TCHGAGRALSRAKSRRNLD+Q+
Sbjct: 388 IPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMTETFGTTCHGAGRALSRAKSRRNLDFQD 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 448 VLDKLADLGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS +AKKRGLPQ+
Sbjct: 201 QADPSKVSSKAKKRGLPQL 219
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQSMFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPSKVSSK 210
>gi|387019439|gb|AFJ51837.1| tRNA-splicing ligase RtcB-like protein [Crotalus adamanteus]
Length = 505
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/478 (56%), Positives = 313/478 (65%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVKQ--------- 39
MNVEGVF+VND LEKLM EELRN+CR G GGFL PG+
Sbjct: 30 MNVEGVFYVNDSLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + P + L+ +
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDECDVQPVKEQLAQSMFD 149
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VD+IY+++AA KMGI+ GQ+CVMIHSGSRG GH
Sbjct: 209 ARAKKRGL-PQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQICVMIHSGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV MEKAMKRD I NDRQLACARI S K A A + +
Sbjct: 268 QVATDALVAMEKAMKRDKIIVNDRQLACARIASQEGQDYLKGMAAAGNYAWVNRSSMTFL 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPL
Sbjct: 328 TRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
I VDYQLTGQPVLIGGTMGTCSYVLTGT +GM ETFG+TCHGAGRALSRAKSRRNLD+Q+
Sbjct: 388 IAVDYQLTGQPVLIGGTMGTCSYVLTGTNQGMTETFGTTCHGAGRALSRAKSRRNLDFQD 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 448 VLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG 505
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|344266592|ref|XP_003405364.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Loxodonta africana]
Length = 505
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/480 (56%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPDAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASTEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKIEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKKT KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKTIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|395819902|ref|XP_003783317.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Otolemur garnettii]
gi|197215673|gb|ACH53063.1| hypothetical protein [Otolemur garnettii]
Length = 505
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 273/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPTK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRPVAVIKG
Sbjct: 446 QDVLDKLADMGISIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPVAVIKG 505
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPTKVSARAKKRGLPQL 219
>gi|224095358|ref|XP_002199589.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Taeniopygia guttata]
Length = 505
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/480 (56%), Positives = 312/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G GGF LPG+
Sbjct: 30 MRVEGVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKAIKLRPIAVIKG 505
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSSRAKKRGLPQL 219
>gi|184185481|gb|ACC68885.1| hypothetical protein [Rhinolophus ferrumequinum]
Length = 505
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 312/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++ +AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNDYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|190402300|gb|ACE77707.1| hypothetical protein [Sorex araneus]
Length = 505
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDSLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIVVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|395538383|ref|XP_003771161.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Sarcophilus harrisii]
Length = 481
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 6 MMVEGVFYVNDPLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 65
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 66 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 125
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 126 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 182
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 183 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 241
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI+S K A A +
Sbjct: 242 GHQVATDALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAAAGNYAWVNRSSMT 301
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 302 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 361
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 362 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 421
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 422 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 481
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 117 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 176
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 177 QADPNKVSARAKKRGLPQL 195
>gi|281182876|ref|NP_001162246.1| tRNA-splicing ligase RtcB homolog [Papio anubis]
gi|302563711|ref|NP_001181487.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
gi|75076521|sp|Q4R6X4.1|RTCB_MACFA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|182639281|sp|A9CB42.1|RTCB_PAPAN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|67969603|dbj|BAE01150.1| unnamed protein product [Macaca fascicularis]
gi|159461553|gb|ABW96826.1| chromosome 22 open reading frame 28 (predicted) [Papio anubis]
gi|355563611|gb|EHH20173.1| hypothetical protein EGK_02972 [Macaca mulatta]
gi|355784931|gb|EHH65782.1| hypothetical protein EGM_02619 [Macaca fascicularis]
gi|380813570|gb|AFE78659.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
gi|383408245|gb|AFH27336.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
gi|384947556|gb|AFI37383.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
Length = 505
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDSEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|417402026|gb|JAA47874.1| Hypothetical protein [Desmodus rotundus]
Length = 505
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI+S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|73969943|ref|XP_531754.2| PREDICTED: tRNA-splicing ligase RtcB homolog [Canis lupus
familiaris]
gi|301772312|ref|XP_002921575.1| PREDICTED: UPF0027 protein C22orf28-like [Ailuropoda melanoleuca]
gi|281342984|gb|EFB18568.1| hypothetical protein PANDA_010474 [Ailuropoda melanoleuca]
gi|355734532|gb|AES11375.1| hypothetical protein [Mustela putorius furo]
Length = 505
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/478 (56%), Positives = 310/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ P++ E+ + + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGVIPMSAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GH
Sbjct: 209 ARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV MEKAMKRD I NDRQLACARI S K A A + +
Sbjct: 268 QVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFL 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPL
Sbjct: 328 TRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
I VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+
Sbjct: 388 IAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQD 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 448 VLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPM+A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|62752829|ref|NP_001015631.1| tRNA-splicing ligase RtcB homolog [Bos taurus]
gi|75057839|sp|Q5E9T9.1|RTCB_BOVIN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|59858027|gb|AAX08848.1| hypothetical protein HSPC117 [Bos taurus]
gi|75775064|gb|AAI04499.1| Chromosome 22 open reading frame 28 ortholog [Bos taurus]
gi|296487405|tpg|DAA29518.1| TPA: hypothetical protein LOC525106 [Bos taurus]
Length = 505
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDSLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|426225197|ref|XP_004006754.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 1 [Ovis aries]
gi|426225199|ref|XP_004006755.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 2 [Ovis aries]
Length = 505
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDSLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|351708233|gb|EHB11152.1| hypothetical protein GW7_07161 [Heterocephalus glaber]
Length = 505
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|348553088|ref|XP_003462359.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Cavia porcellus]
Length = 505
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|118082912|ref|XP_416300.2| PREDICTED: tRNA-splicing ligase RtcB homolog [Gallus gallus]
gi|326912117|ref|XP_003202400.1| PREDICTED: UPF0027 protein C22orf28-like [Meleagris gallopavo]
Length = 505
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/480 (56%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M+VEGVF+VND LEKLM EELRN+CR G GGF LPG+
Sbjct: 30 MHVEGVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSRAKKRGL-PQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG 505
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSSRAKKRGLPQL 219
>gi|7688673|gb|AAF67477.1|AF155658_1 putative 55 kDa protein [Homo sapiens]
Length = 505
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 274/482 (56%), Positives = 310/482 (64%), Gaps = 77/482 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPL-------TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC---- 119
+ P+ LG G ++ E Y WA K E+ G++
Sbjct: 150 HIPVGVGSKGVIPMNAKDLEEALGDGGGL----VLREGY-AWAEDKEHCEEYGRMLQADP 204
Query: 120 --VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSR 175
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSR
Sbjct: 205 NKVSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSR 263
Query: 176 GFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDL 229
G GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 264 GLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEVQDYLKGMAAAGNYAWVNRSS 323
Query: 230 DMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP 289
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPP
Sbjct: 324 MTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPP 383
Query: 290 HHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL 349
HHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNL
Sbjct: 384 HHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNL 443
Query: 350 DYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409
D+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVI
Sbjct: 444 DFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVI 503
Query: 410 KG 411
KG
Sbjct: 504 KG 505
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 70/79 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEAL G LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALGDGGGLVLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|7657015|ref|NP_055121.1| tRNA-splicing ligase RtcB homolog [Homo sapiens]
gi|114686058|ref|XP_001152688.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 2 [Pan
troglodytes]
gi|297708686|ref|XP_002831088.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 1 [Pongo
abelii]
gi|332218056|ref|XP_003258175.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 1 [Nomascus
leucogenys]
gi|397501751|ref|XP_003821539.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Pan paniscus]
gi|410965451|ref|XP_003989261.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Felis catus]
gi|426394247|ref|XP_004063412.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Gorilla gorilla
gorilla]
gi|74753486|sp|Q9Y3I0.1|RTCB_HUMAN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|4886425|emb|CAB43357.1| hypothetical protein [Homo sapiens]
gi|12804223|gb|AAH02970.1| Chromosome 22 open reading frame 28 [Homo sapiens]
gi|16307525|gb|AAH10308.1| Chromosome 22 open reading frame 28 [Homo sapiens]
gi|16876850|gb|AAH16707.1| Chromosome 22 open reading frame 28 [Homo sapiens]
gi|47678431|emb|CAG30336.1| dJ149A16.6 [Homo sapiens]
gi|109451142|emb|CAK54432.1| dJ149A16.6 [synthetic construct]
gi|109451720|emb|CAK54731.1| dJ149A16.6 [synthetic construct]
gi|119580425|gb|EAW60021.1| hypothetical protein HSPC117 [Homo sapiens]
gi|123980056|gb|ABM81857.1| chromosome 22 open reading frame 28 [synthetic construct]
gi|123994833|gb|ABM85018.1| chromosome 22 open reading frame 28 [synthetic construct]
gi|189065566|dbj|BAG35405.1| unnamed protein product [Homo sapiens]
gi|261857526|dbj|BAI45285.1| chromosome 22 open reading frame 28 [synthetic construct]
gi|410221954|gb|JAA08196.1| chromosome 22 open reading frame 28 [Pan troglodytes]
gi|410292766|gb|JAA24983.1| chromosome 22 open reading frame 28 [Pan troglodytes]
gi|410330975|gb|JAA34434.1| chromosome 22 open reading frame 28 [Pan troglodytes]
Length = 505
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|126339653|ref|XP_001366104.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Monodelphis
domestica]
Length = 505
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDPLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDDIYNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI+S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|172072661|ref|NP_001116458.1| tRNA-splicing ligase RtcB homolog [Sus scrofa]
gi|118573909|sp|Q19PY3.1|RTCB_PIG RecName: Full=tRNA-splicing ligase RtcB homolog
gi|106073298|gb|ABF81976.1| hypothetical protein [Sus scrofa]
Length = 505
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|149743002|ref|XP_001499511.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Equus caballus]
gi|349602764|gb|AEP98803.1| UPF0027 protein C22orf28-like protein [Equus caballus]
Length = 505
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|431905247|gb|ELK10292.1| hypothetical protein PAL_GLEAN10015436 [Pteropus alecto]
Length = 505
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGLP-----------DVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|444511890|gb|ELV09964.1| tRNA-splicing ligase RtcB like protein [Tupaia chinensis]
Length = 1370
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/481 (56%), Positives = 314/481 (65%), Gaps = 73/481 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 406 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 465
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 466 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 525
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 526 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 582
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 583 VSARAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 641
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 642 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAAAGNYAWVNRSSMT 701
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 702 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 761
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 762 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 821
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 822 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 881
Query: 412 I 412
+
Sbjct: 882 M 882
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 517 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 576
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 577 QADPNKVSARAKKRGLPQL 595
>gi|74207540|dbj|BAE40021.1| unnamed protein product [Mus musculus]
Length = 505
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/478 (56%), Positives = 310/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGFL PG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ P+ + E+ + + E Y WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGVIPMNVKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GH
Sbjct: 209 PRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGH 267
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV MEKAMKRD I NDRQLACARI S K A A + +
Sbjct: 268 QVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFL 327
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPL
Sbjct: 328 TRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPL 387
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
I VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+
Sbjct: 388 IAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQD 447
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 448 VLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMN +DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNVKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|432094359|gb|ELK25936.1| tRNA-splicing ligase RtcB like protein [Myotis davidii]
Length = 493
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/475 (56%), Positives = 314/475 (66%), Gaps = 75/475 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEG+F+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGIFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYD- 236
GHQVATDALV MEKAMKRD I NDRQLACARI S + + + K + Y
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGN-------YAW 318
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPLI V
Sbjct: 319 AFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAV 378
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
DYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+VL+
Sbjct: 379 DYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLD 438
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 439 KLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 493
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|291389936|ref|XP_002711465.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
Length = 505
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|391335122|ref|XP_003741946.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Metaseiulus
occidentalis]
Length = 504
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/480 (56%), Positives = 311/480 (64%), Gaps = 74/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVK---------- 38
M VEG F+VN HLEKLM +ELR SC+ G VGGFL PG+
Sbjct: 30 MKVEGRFYVNQHLEKLMFDELRESCK-GRVGGFLPGVKQIANVAALPGIVGHSIGLPDIH 88
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 89 SGYGFAIGNMAAFDMDDPQAIVSPGGVGFDINCGVRLLRTNLTEKDVQPVKEQLAQSLFD 148
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 149 HI--PVGVGSKGIIPMNAKDLEEALEMGMDWSLREGY-AWAEDKEHCEEYGRMLNADPSK 205
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQIVDEI+DK ASKMGIE GQVCVMIHSGSRGF
Sbjct: 206 VSSKAKKRGL-PQLGTLGAGNHYAEIQIVDEIFDKQNASKMGIEHTGQVCVMIHSGSRGF 264
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDM 231
GHQVATDAL++ME+AMKRD IE NDRQLACARI+S + + + K + +
Sbjct: 265 GHQVATDALLEMERAMKRDRIEVNDRQLACARIHSQEGQDYLKSMSAAANFAWVNRSSMT 324
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF K FN+TPDDLDM VIYDVSHNIAK EEH+VDGK KTLLVHRKGSTRAFPPHH
Sbjct: 325 FLTRQAFGKMFNSTPDDLDMQVIYDVSHNIAKVEEHIVDGKMKTLLVHRKGSTRAFPPHH 384
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM+ TFGSTCHGAGRALSRAKSRR LDY
Sbjct: 385 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEEGMKNTFGSTCHGAGRALSRAKSRRALDY 444
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL KL + ISIRVASPKLVMEEAPESYKNVTDVVDTCHA ISKK KLRP+AVIKG
Sbjct: 445 TDVLAKLAEKNISIRVASPKLVMEEAPESYKNVTDVVDTCHAAKISKKCVKLRPIAVIKG 504
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 77/79 (97%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 140 EQLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 199
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS +AKKRGLPQ+
Sbjct: 200 NADPSKVSSKAKKRGLPQL 218
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGY WAEDKEH E +
Sbjct: 138 VKEQLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGR 197
Query: 474 SMFDHIPVGVGSKG 487
M + P V SK
Sbjct: 198 -MLNADPSKVSSKA 210
>gi|390334885|ref|XP_793085.3| PREDICTED: tRNA-splicing ligase RtcB homolog [Strongylocentrotus
purpuratus]
Length = 508
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/478 (55%), Positives = 309/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG F+V+ LEKLM EEL+ +CR VGGFLP VKQ
Sbjct: 33 MKVEGRFYVDSKLEKLMFEELQQACRSKGVGGFLPAVKQIANVAALPGITGYSIGLPDIH 92
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + P + L+ +
Sbjct: 93 SGYGFAIGNMAAFDMSNPEAVVSPGGVGFDINCGVRLLRTNLTEKDVKPVKEQLAQSLFD 152
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + +GA +++ + E Y WA K E+ G++ V
Sbjct: 153 HIPVGVGSKGVIPMGAKELEEALEMGMDWSLREGY-AWAEDKEHCEEYGRMLQADPNKVS 211
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEIY+ AA KMGI+ GQVC+MIHSGSRG GH
Sbjct: 212 ARAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNDHAAKKMGIDRKGQVCLMIHSGSRGLGH 270
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD I+ NDRQLACARI+S + + + K + ++ +
Sbjct: 271 QVATDALVQMEKAMKRDKIQVNDRQLACARIHSQEGQDYLKAMAAAANYAWVNRSSMTFL 330
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAKQFNTTPDDLDMHVIYDVSHNIAK EEHMVDG QKTLLVHRKGSTRAFPPHHPL
Sbjct: 331 TRQAFAKQFNTTPDDLDMHVIYDVSHNIAKVEEHMVDGVQKTLLVHRKGSTRAFPPHHPL 390
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ+TGQPVLIGGTMGTCSYVLTGTE GM T+G+TCHGAGRA SRAKSRRNLDYQ
Sbjct: 391 IPVDYQMTGQPVLIGGTMGTCSYVLTGTESGMATTYGTTCHGAGRAWSRAKSRRNLDYQT 450
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL L GISIRVASPKLVMEEAPESYK+VT VV+TCH VGISKK KLRP+AVIKG
Sbjct: 451 VLKNLHELGISIRVASPKLVMEEAPESYKDVTSVVNTCHDVGISKKVLKLRPIAVIKG 508
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM A++LEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 144 EQLAQSLFDHIPVGVGSKGVIPMGAKELEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 203
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 204 QADPNKVSARAKKRGLPQL 222
>gi|296191731|ref|XP_002743754.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Callithrix jacchus]
Length = 505
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDRKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|149637947|ref|XP_001510104.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Ornithorhynchus
anatinus]
Length = 505
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G GGF LPG+
Sbjct: 30 MQVEGVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI+S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|170649615|gb|ACB21203.1| hypothetical protein [Callicebus moloch]
Length = 505
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|21703842|ref|NP_663397.1| tRNA-splicing ligase RtcB homolog [Mus musculus]
gi|81880226|sp|Q99LF4.1|RTCB_MOUSE RecName: Full=tRNA-splicing ligase RtcB homolog; AltName:
Full=Focal adhesion-associated protein; Short=FAAP
gi|81884655|sp|Q6AYT3.1|RTCB_RAT RecName: Full=tRNA-splicing ligase RtcB homolog; AltName: Full=p55
gi|13096991|gb|AAH03288.1| DNA segment, Chr 10, Wayne State University 52, expressed [Mus
musculus]
gi|37722161|gb|AAR02005.1| focal adhesion associated protein [Mus musculus]
gi|50926851|gb|AAH78924.1| P55 [Rattus norvegicus]
gi|74142478|dbj|BAE31991.1| unnamed protein product [Mus musculus]
gi|74181588|dbj|BAE30059.1| unnamed protein product [Mus musculus]
gi|74185421|dbj|BAE30183.1| unnamed protein product [Mus musculus]
gi|74207239|dbj|BAE30808.1| unnamed protein product [Mus musculus]
gi|74212476|dbj|BAE30981.1| unnamed protein product [Mus musculus]
gi|74219184|dbj|BAE26729.1| unnamed protein product [Mus musculus]
gi|74219227|dbj|BAE26747.1| unnamed protein product [Mus musculus]
gi|74219466|dbj|BAE29508.1| unnamed protein product [Mus musculus]
gi|74219639|dbj|BAE29587.1| unnamed protein product [Mus musculus]
gi|148689481|gb|EDL21428.1| DNA segment, Chr 10, Wayne State University 52, expressed [Mus
musculus]
gi|149067385|gb|EDM17118.1| P55 [Rattus norvegicus]
Length = 505
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|221131263|ref|XP_002156922.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Hydra magnipapillata]
Length = 505
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/480 (55%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
MNVEG+F++N HLEKLM +ELR G VGGFLPG+KQ
Sbjct: 30 MNVEGIFYINQHLEKLMFDELRQFANFGGVGGFLPGMKQIANVAALPGIVHRSVGLPDIH 89
Query: 40 ------IANVAAL----------PGIVG-----------RSVGLPDVHSVPS--TQWLSD 70
I N+AA PG VG ++ + DV Q L D
Sbjct: 90 SGYGFAIGNMAAFDVNDPLSIVSPGGVGFDINCGVRLIRTNLNVKDVEPFKEQIVQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGIIPMGANDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLQADPSK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+V+EI+D AA +MG++ GQVCVMIH GSRG
Sbjct: 207 VSTKAKKRGL-PQLGTLGAGNHYAEIQVVEEIFDTHAAKRMGLDHCGQVCVMIHCGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH----- 232
GHQVATDALV ME+AM RD I NDRQLACARINS + + + + ++
Sbjct: 266 GHQVATDALVAMERAMTRDKIIVNDRQLACARINSTEGQDYLSAMAAAANYAWVNRSSMT 325
Query: 233 -VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF K FN+TPDDLDMHVIYDVSHNIAK EEHMV+G KTLLVHRKG+TRAFPPHH
Sbjct: 326 FLTRQAFGKVFNSTPDDLDMHVIYDVSHNIAKIEEHMVNGCLKTLLVHRKGATRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGG+MGTCSYVLTGTE GM+ETFG+TCHGAGRALSRAKSRRNLDY
Sbjct: 386 PLIPVDYQLTGQPVLIGGSMGTCSYVLTGTEVGMKETFGTTCHGAGRALSRAKSRRNLDY 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL+KL+SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHA GISKK KLRP+AVIKG
Sbjct: 446 NQVLDKLKSQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKAIKLRPIAVIKG 505
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 78/86 (90%), Gaps = 1/86 (1%)
Query: 463 EDKEHF-ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 521
+D E F E++ QS+FDHIPVGVGSKGIIPM A DLEEALEMGMDWSLREGYIWAEDKEHC
Sbjct: 134 KDVEPFKEQIVQSLFDHIPVGVGSKGIIPMGANDLEEALEMGMDWSLREGYIWAEDKEHC 193
Query: 522 EEYGRMLNADPSKVSMRAKKRGLPQV 547
EEYGRML ADPSKVS +AKKRGLPQ+
Sbjct: 194 EEYGRMLQADPSKVSTKAKKRGLPQL 219
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
E++ QS+FDHIPVGVGSKGIIPM A DLEEALEMGMDWSLREGYIWAEDKEH E +
Sbjct: 139 FKEQIVQSLFDHIPVGVGSKGIIPMGANDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V +K
Sbjct: 199 -MLQADPSKVSTK 210
>gi|12652799|gb|AAH00151.1| Chromosome 22 open reading frame 28 [Homo sapiens]
Length = 505
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/480 (56%), Positives = 312/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDD D+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDFDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|46485379|ref|NP_997497.1| tRNA-splicing ligase RtcB homolog [Rattus norvegicus]
gi|45861501|gb|AAS78621.1| focal adhesion associated protein [Rattus norvegicus]
Length = 505
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 269/480 (56%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S + + + K +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNCAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|354481935|ref|XP_003503156.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Cricetulus griseus]
Length = 514
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/479 (56%), Positives = 312/479 (65%), Gaps = 73/479 (15%)
Query: 2 NVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ---------- 39
VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 40 TVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHS 99
Query: 40 -----IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSDN 71
I N+AA PG VG + DV V Q + D+
Sbjct: 100 GYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDH 159
Query: 72 TMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------V 120
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 160 I--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNKV 216
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 217 SPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 275
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMH 232
HQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 276 HQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTF 335
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHP
Sbjct: 336 LTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHP 395
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q
Sbjct: 396 LIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQ 455
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 456 DVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 514
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 150 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 209
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 210 QADPNKVSPRAKKRGLPQL 228
>gi|198418617|ref|XP_002130028.1| PREDICTED: similar to UPF0027 protein C22orf28 [Ciona intestinalis]
Length = 504
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/478 (55%), Positives = 309/478 (64%), Gaps = 70/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
M VEG FFVN HLE LMLEELR+SC+ G GGFLPGVKQIA
Sbjct: 30 MKVEGEFFVNKHLENLMLEELRHSCQ-GSTGGFLPGVKQIANVAALPGIVKSSIGLPDIH 88
Query: 42 --------NVAAL----------PGIVGRSVGL-----------PDVHSVPSTQWLSDNT 72
N+AA PG VG + DV+ V S
Sbjct: 89 SGYGFAIGNMAAFDMDDPQAIISPGGVGFDINCGVRLLRTNLSETDVNPVKEILCQSLFD 148
Query: 73 MRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + +GA + +++ + E Y WA K E+ G++ V
Sbjct: 149 HIPVGVGSKGVIPMGAKDLEEALEMGMDWSLREGY-AWAEDKEHCEEYGRMLQAEPSKVS 207
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI+DK+AA+KMG+E GQVCVMIH GSRG GH
Sbjct: 208 ARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFDKYAANKMGLEYKGQVCVMIHCGSRGLGH 266
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHV 233
QVATDALV MEKAM RDNI NDRQLACA I S + + + K + +
Sbjct: 267 QVATDALVAMEKAMNRDNIIVNDRQLACAHIGSQEGQDYLKGMCAAGNYAWVNRSSMTFL 326
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AF K F +PDDLDM +IYDVSHNIAK EEHMVDGKQK LLVHRKG+TRAFPPHHPL
Sbjct: 327 TRQAFGKVFKCSPDDLDMQMIYDVSHNIAKIEEHMVDGKQKRLLVHRKGATRAFPPHHPL 386
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM++TFG+TCHGAGRALSRAKSRR LD+QE
Sbjct: 387 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMEQTFGTTCHGAGRALSRAKSRRKLDFQE 446
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL Q ISIRVASPKLVMEEAPESYK+VT+VV+TC A GISKK +LRP+AVIKG
Sbjct: 447 VLDKLTDQNISIRVASPKLVMEEAPESYKDVTEVVNTCQAAGISKKAVRLRPIAVIKG 504
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 73/79 (92%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L QS+FDHIPVGVGSKG+IPM A+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 140 EILCQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 199
Query: 529 NADPSKVSMRAKKRGLPQV 547
A+PSKVS RAKKRGLPQ+
Sbjct: 200 QAEPSKVSARAKKRGLPQL 218
>gi|48146467|emb|CAG33456.1| HSPC117 [Homo sapiens]
Length = 505
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/480 (56%), Positives = 312/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+T HGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTRHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|255079850|ref|XP_002503505.1| predicted protein [Micromonas sp. RCC299]
gi|327488439|sp|C1E9Y5.1|RTCB_MICSR RecName: Full=tRNA-splicing ligase RtcB homolog
gi|226518772|gb|ACO64763.1| predicted protein [Micromonas sp. RCC299]
Length = 513
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/478 (55%), Positives = 308/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
M V GVF+VN HLE LM +ELR G VGGFLP VKQ+ANVA LPGIV
Sbjct: 38 MRVPGVFYVNKHLETLMFDELRQHVDRGDVGGFLPAVKQLANVACLPGIVSKSIALPDVH 97
Query: 51 ---GRSVG------LPDVHSVPS-------------------------------TQWLSD 70
G ++G + D ++V S Q L D
Sbjct: 98 SGYGFAIGNVAAFDMSDPNAVVSPGGVGFDINCGVRVVRTNLHERDVTDIKEKLAQSLFD 157
Query: 71 NT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------VM 121
+ + S I SP L A + E Y WA K E+ G++ V
Sbjct: 158 HIPVGVGSQGIIPTSPAGLEAALEMGMDWSLREGY-AWAEDKEHCEEYGRMLNADPNKVS 216
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI+DK AA KMGIE +GQV VMIHSGSRG GH
Sbjct: 217 ARAKKRGL-PQMGTLGAGNHYAEIQVVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLGH 275
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHV 233
QVATDAL +ME+AM RD I NDRQLACA+I+S + + + A + +
Sbjct: 276 QVATDALTEMERAMARDGILVNDRQLACAKISSPEGQNYLSAMSCAANYAWVNRSSMTFL 335
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F+ TPDDLDMHV+YDVSHNIAK EEH+VDG+ KTLLVHRKGSTRAFPPHHPL
Sbjct: 336 CRQAFAKMFDQTPDDLDMHVVYDVSHNIAKIEEHVVDGELKTLLVHRKGSTRAFPPHHPL 395
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ TGQPVLIGGTMGTCSY+LTGTEKGM+ETFGSTCHGAGRA SR SR LDY E
Sbjct: 396 IPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMEETFGSTCHGAGRARSRNNSRNKLDYTE 455
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KL+++GI+IRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 456 VLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 513
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 149 EKLAQSLFDHIPVGVGSQGIIPTSPAGLEAALEMGMDWSLREGYAWAEDKEHCEEYGRML 208
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVS RAKKRGLPQ+
Sbjct: 209 NADPNKVSARAKKRGLPQM 227
>gi|340371191|ref|XP_003384129.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Amphimedon
queenslandica]
Length = 508
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 264/478 (55%), Positives = 307/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M VEG+F+VNDHL+ LM +ELR+ C G VGGF LPG+
Sbjct: 33 MKVEGLFYVNDHLKDLMFDELRHHCSSGGVGGFLPAVKQIGNVAALPGIVGKSIGLPDVH 92
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + D+ V Q L D
Sbjct: 93 SGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLFKKDIEPVKEQLAQSLFD 152
Query: 71 NT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------VM 121
+ + S + + L + + E Y WA K E+ G++ V
Sbjct: 153 HIPVGVGSKGVIPMTARDLESALEMGMDWTLREGYG-WAEDKEHCEEYGRMLQADPSKVS 211
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+V+EI+DK AA+KMGIE+ QVCVMIHSGSRG GH
Sbjct: 212 QRAKKRGL-PQLGTLGAGNHYAEIQVVEEIFDKHAAAKMGIEEKEQVCVMIHSGSRGLGH 270
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV+MEKAMKRDNIE NDRQLACA+I S K A A + +
Sbjct: 271 QVATDALVEMEKAMKRDNIEVNDRQLACAKIKSKEGENYLKGMAAAANYAWVNRSSMTFL 330
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F +TPDDLDMH+IYDVSHNIAK E+H+V G++KTLLVHRKGSTRAFPPHHPL
Sbjct: 331 TRQAFAKMFKSTPDDLDMHIIYDVSHNIAKVEQHIVSGREKTLLVHRKGSTRAFPPHHPL 390
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT+KG ETFGSTCHGAGRALSRAKSRR L Y+E
Sbjct: 391 IPVDYQLTGQPVLIGGTMGTCSYVLTGTDKGFTETFGSTCHGAGRALSRAKSRRTLGYEE 450
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL L QGI+IRVASPKLVMEEAP+SYKNVTDVV+TCH+ GIS K FKL+P+AVIKG
Sbjct: 451 VLESLAKQGIAIRVASPKLVMEEAPQSYKNVTDVVETCHSAGISNKAFKLKPIAVIKG 508
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 74/79 (93%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM ARDLE ALEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 144 EQLAQSLFDHIPVGVGSKGVIPMTARDLESALEMGMDWTLREGYGWAEDKEHCEEYGRML 203
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS RAKKRGLPQ+
Sbjct: 204 QADPSKVSQRAKKRGLPQL 222
>gi|308476896|ref|XP_003100663.1| hypothetical protein CRE_20444 [Caenorhabditis remanei]
gi|308264681|gb|EFP08634.1| hypothetical protein CRE_20444 [Caenorhabditis remanei]
Length = 505
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 255/477 (53%), Positives = 308/477 (64%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG F+VN+ LE+LM +EL+ SC +GGFLP V+QIANVA+LPGIVG S+GLPD+H
Sbjct: 30 MNVEGRFYVNNRLEQLMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIH 89
Query: 61 -------------------SVPS-----------TQWLSDNTMRSSNIWKRSPLT----- 85
SV S + L N M + LT
Sbjct: 90 SGYGFSIGNIAAFDVSNPESVISPGGVGFDINCGVRLLRTNLMEEDVKPVKEQLTQSLFD 149
Query: 86 ---LGAGNHYAEIQIVDEIYD--------------KWAASKMGIEDVGQVC------VMI 122
+G G+ A + ++ + WA K E+ G++ V +
Sbjct: 150 HIPVGVGSRGAIPMMASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASKVSM 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAE+Q+VDEIYDK AAS MGI+ GQV VM+H GSRG GHQ
Sbjct: 210 RAKKRGL-PQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLGHQ 268
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
VATD+LV+MEKAM RD I ND+QLACARINS + K + + +
Sbjct: 269 VATDSLVEMEKAMARDGIMVNDKQLACARINSTEGKNYFAGMAAAANFAWVNRSCITFCV 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ K L VHRKG+TRAFP HHPLI
Sbjct: 329 RNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPKKLCVHRKGATRAFPAHHPLI 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQL GQPVLIGG+MGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRR + + V
Sbjct: 389 PVDYQLIGQPVLIGGSMGTCSYVLTGTEQGMVETFGTTCHGAGRALSRAKSRRTITWDSV 448
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ L+ + ISIR+ASPKL+MEEAPESYKNVTDVVDTC A GISKK KLRP+AVIKG
Sbjct: 449 IDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDTCDAAGISKKAVKLRPIAVIKG 505
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 75/93 (80%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K E+L QS+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY W
Sbjct: 127 LRTNLMEEDVKPVKEQLTQSLFDHIPVGVGSRGAIPMMASDLVECLEMGMDWTLREGYSW 186
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML AD SKVSMRAKKRGLPQ+
Sbjct: 187 AEDKEHCEEYGRMLQADASKVSMRAKKRGLPQL 219
>gi|167522174|ref|XP_001745425.1| hypothetical protein [Monosiga brevicollis MX1]
gi|327488440|sp|A9UXG6.1|RTCB_MONBE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|163776383|gb|EDQ90003.1| predicted protein [Monosiga brevicollis MX1]
Length = 497
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/480 (55%), Positives = 311/480 (64%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG F+VN LE LMLEEL+ VGGFLP VKQ
Sbjct: 22 MKVEGRFYVNKALEALMLEELQQFASARGVGGFLPAVKQIANVASLPGIVGASVGLPDVH 81
Query: 40 ------IANVAAL----------PGIVGRSVG-----------LPDVHSVPS--TQWLSD 70
I N+AA PG VG + L DV V Q L D
Sbjct: 82 SGYGFAIGNMAAFDMDDPEAIVSPGGVGFDINCGVRLLRTNLTLEDVEPVKEQLAQSLFD 141
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 142 HI--PVGVGSKGVIPMNAKDLEEALEMGMDWSLREGY-AWAEDKEHCEEYGRMLQADASK 198
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+V+EIYDK AA+KMGI Q+CVMIHSGSRG
Sbjct: 199 VSARAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKEAAAKMGINKKNQICVMIHSGSRGL 257
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH----- 232
GHQVATDALV MEKAMKRD IE NDRQLACARI+S + + + K + ++
Sbjct: 258 GHQVATDALVAMEKAMKRDGIEVNDRQLACARIHSEEGQNYLKAMAAAANYAWVNRSTMT 317
Query: 233 -VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAKQFNTTP++LDMHVIYDVSHNIAKTE HMV+G ++TLLVHRKGSTRAFPPHH
Sbjct: 318 FLCRQAFAKQFNTTPEELDMHVIYDVSHNIAKTERHMVNGTERTLLVHRKGSTRAFPPHH 377
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQL GQPVLIGGTMGTCSYVLTGT+ G ++TFGSTCHGAGRALSRAKSRR LDY
Sbjct: 378 PLIPVDYQLIGQPVLIGGTMGTCSYVLTGTDTGFRDTFGSTCHGAGRALSRAKSRRTLDY 437
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL+ +GI+IRVASPKLVMEEAPESYK+VT VVDTCHA GISKK KLRP+AVIKG
Sbjct: 438 QQVLDKLDKKGIAIRVASPKLVMEEAPESYKDVTAVVDTCHAAGISKKVVKLRPIAVIKG 497
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPMNA+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 133 EQLAQSLFDHIPVGVGSKGVIPMNAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 192
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SKVS RAKKRGLPQ+
Sbjct: 193 QADASKVSARAKKRGLPQL 211
>gi|6841456|gb|AAF29081.1|AF161466_1 HSPC117 [Homo sapiens]
Length = 505
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 267/480 (55%), Positives = 310/480 (64%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLA + S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLALSSNASPEVQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|324504186|gb|ADY41808.1| Unknown [Ascaris suum]
Length = 505
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/480 (53%), Positives = 309/480 (64%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
MNVEG F+VN LEKLM +ELRN+CR +GGFLP V+Q
Sbjct: 30 MNVEGRFYVNKALEKLMFDELRNACRSDGIGGFLPAVRQVGNVAALPAIVSASIGLPDIH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNIAAFDIADPLSVVSPGGVGFDINCGVRLIRTNLSEEDVQPVKEQLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYS-WAEDKEHCEEYGRMLQADASK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHY E+Q+VDEI+D +AASKMGI+ VGQVCVMIH GSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYGEVQVVDEIFDTYAASKMGIDRVGQVCVMIHCGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATD+LV MEKAMKRD I NDRQLACARI S K A A F
Sbjct: 266 GHQVATDSLVAMEKAMKRDAIGVNDRQLACARITSVEGQDYLKGMAAAANFAWVNRSCMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
AFAK F+ +PDDLDMHVIYDVSHNIAK EEH+++ K + L VHRKGSTRAFPPHH
Sbjct: 326 FCARQAFAKVFSMSPDDLDMHVIYDVSHNIAKMEEHLINDKPRQLCVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQL+GQPVLIGGTMGT SYVLTGT++GM+ETF +TCHGAGRALSRAKSRRN+D+
Sbjct: 386 PLIPVDYQLSGQPVLIGGTMGTFSYVLTGTQQGMKETFATTCHGAGRALSRAKSRRNIDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QEVL++++++GISIRVASPKLVMEEAPESYK+VTDVV+TCH GIS+KT KLRP+AVIKG
Sbjct: 446 QEVLDRMKAKGISIRVASPKLVMEEAPESYKDVTDVVNTCHEAGISRKTVKLRPIAVIKG 505
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SKVS RAKKRGLPQ+
Sbjct: 201 QADASKVSPRAKKRGLPQL 219
>gi|260814944|ref|XP_002602173.1| hypothetical protein BRAFLDRAFT_216547 [Branchiostoma floridae]
gi|327488435|sp|C3YN79.1|RTCB_BRAFL RecName: Full=tRNA-splicing ligase RtcB homolog
gi|229287480|gb|EEN58185.1| hypothetical protein BRAFLDRAFT_216547 [Branchiostoma floridae]
Length = 507
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/480 (55%), Positives = 305/480 (63%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M V+G F+VND LEKLM +ELR R GGFLP +KQ
Sbjct: 32 MKVDGFFYVNDLLEKLMFDELRQHSRAAGFGGFLPAMKQIANVAALPGIVQKSVGLPDVH 91
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 92 AGYGFAIGNLAAFDMSNPEAVVSPGGVGFDINCGVRLLRTNLDERDVQPVKDELAQAMFD 151
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVG------QVC 119
+ + + + +GA + +++ + E Y WA K E+ G Q
Sbjct: 152 HI--PVGVGSKGVIPMGARDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLNADQSA 208
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI+D +A+ +MGI+ GQV VMIHSGSRGF
Sbjct: 209 VGSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIFDDYASQRMGIDHKGQVVVMIHSGSRGF 267
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD + TNDRQLACARI+S K A A F
Sbjct: 268 GHQVATDALVAMEKAMKRDKVLTNDRQLACARIHSPEGQEYLKGMACAANFAWVNRSSMT 327
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLDM +IYDVSHNIAK EEH+ TLLVHRKGSTRAFPPHH
Sbjct: 328 FLSRQAFAKVFNTTPDDLDMQLIYDVSHNIAKMEEHISFQLSTTLLVHRKGSTRAFPPHH 387
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQL+GQPVLIGGTMGTCSYVLTGTEKGM++TFG+TCHGAGRA SRAKSRRNLDY
Sbjct: 388 PLIPVDYQLSGQPVLIGGTMGTCSYVLTGTEKGMEQTFGTTCHGAGRAWSRAKSRRNLDY 447
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QEVL++L GISIRVASPKLVMEEAPESYKNVTDVV+TCHAVGISKK KLRP+AVIKG
Sbjct: 448 QEVLDRLAELGISIRVASPKLVMEEAPESYKNVTDVVNTCHAVGISKKAIKLRPIAVIKG 507
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ LAQ+MFDHIPVGVGSKG+IPM ARDLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 143 DELAQAMFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 202
Query: 529 NADPSKVSMRAKKRGLPQV 547
NAD S V +AKKRGLPQ+
Sbjct: 203 NADQSAVGSKAKKRGLPQL 221
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ + LAQ+MFDHIPVGVGSKG+IPM ARDLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 141 VKDELAQAMFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 200
Query: 474 SMFDHIPVGVGSK 486
M + VGSK
Sbjct: 201 -MLNADQSAVGSK 212
>gi|358336819|dbj|GAA55270.1| tRNA-splicing ligase RtcB homolog [Clonorchis sinensis]
Length = 688
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 256/455 (56%), Positives = 303/455 (66%), Gaps = 67/455 (14%)
Query: 3 VEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV------------ 50
VEGVF+VND LEKLM +ELRN R G GGFLPG+KQI NVAALPGIV
Sbjct: 231 VEGVFYVNDFLEKLMFDELRNFTRSGDFGGFLPGMKQIGNVAALPGIVHRSVGLPDVHSG 290
Query: 51 -GRSVG------LPDVHSVPS---------------------TQWLSDNTMRSSNIWKRS 82
G ++G L D ++V S Q L + ++
Sbjct: 291 YGFAIGNMAAFDLSDPNAVVSPGGVGFDINCGVRLLRTNLTLKQVLPVKEKLTQTLFDHI 350
Query: 83 PLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VMIHS 124
P+ +G+ G + Q ++E + WA K E+ G++ V +
Sbjct: 351 PVGVGSKGVIPMDAQALEEALEMGMDWSLRQGYVWADDKEHCEEYGRMLQADPSKVSSRA 410
Query: 125 GSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG Q+ T AGNHYAEIQ+V++I+DK AA+KMGI+ + QV +MIH GSRG GHQVA
Sbjct: 411 KKRGLP-QLGTLGAGNHYAEIQVVEQIFDKHAATKMGIDQLNQVVLMIHCGSRGMGHQVA 469
Query: 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------VIYD 236
TDALV ME+AMKRD IE NDRQLACAR++S + + + K + ++ +
Sbjct: 470 TDALVAMERAMKRDKIEVNDRQLACARVDSQEGQDYLKAMAAAANYAWVNRSSMTFLARQ 529
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
AFAK F +TPDDLDMH+IYDVSHNIAK EEH VDGK KTLLVHRKGSTRAFPPHHPLIPV
Sbjct: 530 AFAKIFQSTPDDLDMHIIYDVSHNIAKVEEHWVDGKIKTLLVHRKGSTRAFPPHHPLIPV 589
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
DYQLTGQPVLIGGTMGTCSYVLTGTE+ M ETFGSTCHGAGRALSRAKSRRNLDY +VL
Sbjct: 590 DYQLTGQPVLIGGTMGTCSYVLTGTEQAMTETFGSTCHGAGRALSRAKSRRNLDYTDVLE 649
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
L+++GISIRVASPKLVMEEAPESYKNVTDVVDTC
Sbjct: 650 DLQAKGISIRVASPKLVMEEAPESYKNVTDVVDTC 684
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q++FDHIPVGVGSKG+IPM+A+ LEEALEMGMDWSLR+GY+WA+DKEHCEEYGRML
Sbjct: 340 EKLTQTLFDHIPVGVGSKGVIPMDAQALEEALEMGMDWSLRQGYVWADDKEHCEEYGRML 399
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS RAKKRGLPQ+
Sbjct: 400 QADPSKVSSRAKKRGLPQL 418
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L Q++FDHIPVGVGSKG+IPM+A+ LEEALEMGMDWSLR+GY+WA+DKEH E +
Sbjct: 338 VKEKLTQTLFDHIPVGVGSKGVIPMDAQALEEALEMGMDWSLRQGYVWADDKEHCEEYGR 397
Query: 474 SMFDHIPVGVGSKG 487
M P V S+
Sbjct: 398 -MLQADPSKVSSRA 410
>gi|17506665|ref|NP_492498.1| Protein F16A11.2 [Caenorhabditis elegans]
gi|2501619|sp|P90838.2|RTCB_CAEEL RecName: Full=tRNA-splicing ligase RtcB homolog
gi|6435496|emb|CAB04121.2| Protein F16A11.2 [Caenorhabditis elegans]
Length = 505
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/477 (52%), Positives = 308/477 (64%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRS------- 53
MNVEG F+VN+ LE+LM +EL+ SC +GGFLP V+QIANVA+LPGIVG S
Sbjct: 30 MNVEGRFYVNNSLEQLMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIH 89
Query: 54 --------------VGLPDVHSVPSTQWLSDNT---MRSSNIWKRS--PLT--------- 85
VG P+ P N + +N+++ + PL
Sbjct: 90 SGYGFSIGNIAAFDVGNPESVISPGGVGFDINCGVRLLRTNLFEENVKPLKEQLTQSLFD 149
Query: 86 ---LGAGNHYAEIQIVDEIYD--------------KWAASKMGIEDVGQVC------VMI 122
+G G+ A + ++ + WA K E+ G++ V +
Sbjct: 150 HIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASKVSL 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAE+Q+VDEIYDK AAS MGI++ GQV VM+H GSRG GHQ
Sbjct: 210 RAKKRGL-PQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDEEGQVVVMLHCGSRGLGHQ 268
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVI 234
VATD+LV+MEKAM RD I ND+QLACARINS + K A A F +
Sbjct: 269 VATDSLVEMEKAMARDGIVVNDKQLACARINSVEGKNYFSGMAAAANFAWVNRSCITFCV 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ + L VHRKG+TRAFP HHPLI
Sbjct: 329 RNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRQLCVHRKGATRAFPAHHPLI 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQL GQPVLIGG+MGTCSYVLTGTE+G+ ETFG+TCHGAGRALSRAKSRR + + V
Sbjct: 389 PVDYQLIGQPVLIGGSMGTCSYVLTGTEQGLVETFGTTCHGAGRALSRAKSRRTITWDSV 448
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ L+ + ISIR+ASPKL+MEEAPESYKNVTDVVDTC A GISKK KLRP+AVIKG
Sbjct: 449 IDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDTCDAAGISKKAVKLRPIAVIKG 505
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 70/79 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SKVS+RAKKRGLPQ+
Sbjct: 201 QADASKVSLRAKKRGLPQL 219
>gi|303272537|ref|XP_003055630.1| predicted protein [Micromonas pusilla CCMP1545]
gi|327488438|sp|C1MI97.1|RTCB_MICPC RecName: Full=tRNA-splicing ligase RtcB homolog
gi|226463604|gb|EEH60882.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 507
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/478 (54%), Positives = 298/478 (62%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M V G F+VN HLE LM EEL+ G GGFLP VKQ
Sbjct: 32 MRVPGTFYVNKHLETLMFEELQQHVDSGGHGGFLPAVKQLANVACLPGIVGKSIAMPDVH 91
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I NVAA PG VG + DV V Q L D
Sbjct: 92 SGYGFCIGNVAAFDMSDPAAVVSPGGVGFDINCGVRVVRTNLMESDVADVKEKLAQALFD 151
Query: 71 NT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------VM 121
+ + S I S L + + E Y WA K E+ G++ V
Sbjct: 152 HIPVGVGSQGIIPTSAAGLESALEMGMDWSLREGY-AWAEDKEHCEEYGRMLTADPNKVS 210
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI+D AA KMG++ VGQV VMIHSGSRG GH
Sbjct: 211 ARAKKRGL-PQMGTLGAGNHYAEIQVVDEIFDAHAAEKMGVDAVGQVMVMIHSGSRGLGH 269
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHV 233
QVATDAL +ME+AM RD IETNDRQLACARINS + + + A + +
Sbjct: 270 QVATDALTEMERAMARDGIETNDRQLACARINSTEGQNYLSAMSCAANYAWVNRSSMTFL 329
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F++TPDDLDMHV+YDVSHNIAK EEHMVDGK KTLLVHRKGSTRAFPPHHPL
Sbjct: 330 CRQAFAKMFDSTPDDLDMHVVYDVSHNIAKIEEHMVDGKLKTLLVHRKGSTRAFPPHHPL 389
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ TGQPV+IGGTMGTCSY+LTGT+KGM ETFGSTCHGAGRA SR SR LDY E
Sbjct: 390 IPVDYQYTGQPVMIGGTMGTCSYILTGTQKGMDETFGSTCHGAGRARSRNNSRNKLDYAE 449
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL L+++GISIRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 450 VLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 507
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ++FDHIPVGVGS+GIIP +A LE ALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 143 EKLAQALFDHIPVGVGSQGIIPTSAAGLESALEMGMDWSLREGYAWAEDKEHCEEYGRML 202
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 203 TADPNKVSARAKKRGLPQM 221
>gi|195998129|ref|XP_002108933.1| hypothetical protein TRIADDRAFT_18395 [Trichoplax adhaerens]
gi|327488445|sp|B3RID0.1|RTCB_TRIAD RecName: Full=tRNA-splicing ligase RtcB homolog
gi|190589709|gb|EDV29731.1| hypothetical protein TRIADDRAFT_18395 [Trichoplax adhaerens]
Length = 510
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 253/478 (52%), Positives = 309/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
M VEG+F+ + LE LM EEL++ C VGGFLPGVKQI
Sbjct: 35 MKVEGLFYADLPLEHLMFEELQHFCSCNGVGGFLPGVKQIGNVAALPGIVGKSIGLPDIH 94
Query: 42 --------NVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD-NTMRSS---NIW 79
N+AA PG VG + V + + D N M+ + +++
Sbjct: 95 SGYGFAIGNIAAFDVANPKAIVSPGGVGFDINC-GVRLIRTNLHERDVNPMKETLAQSLF 153
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------VM 121
P+ +G+ G + +DE + WA K E+ G++ +
Sbjct: 154 DHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADSNKIS 213
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ VDEIYD +AA MGI GQ+C+M+HSGSRG GH
Sbjct: 214 LRAKKRGL-PQLGTLGAGNHYAEIQAVDEIYDSFAAKSMGINRRGQICIMVHSGSRGLGH 272
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHV 233
QVATDAL MEKAM +D I NDRQLACARI S++ + + K + +
Sbjct: 273 QVATDALFNMEKAMIKDGINVNDRQLACARIASDEGQNYLKGMAAAANYAWVNRSSMTFL 332
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F+TTPDDLDMHVIYDVSHNIAK EEH+V+GK TLLVHRKGSTRAFPPHHPL
Sbjct: 333 ARQAFAKCFHTTPDDLDMHVIYDVSHNIAKIEEHVVNGKLSTLLVHRKGSTRAFPPHHPL 392
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCS+V+TGT +GM ET+G+TCHGAGRALSRAK+RR+L+YQE
Sbjct: 393 IPVDYQLTGQPVLIGGTMGTCSFVMTGTSQGMSETYGTTCHGAGRALSRAKARRSLNYQE 452
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL++L + GISIRVASPKLVMEEAPESYK+VT+VV+TCH GISKK FKLRP+AVIKG
Sbjct: 453 VLDRLNASGISIRVASPKLVMEEAPESYKDVTNVVETCHLAGISKKCFKLRPIAVIKG 510
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LAQS+FDHIPVGVGS+GIIPMNARDL+EALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 146 ETLAQSLFDHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGRML 205
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +K+S+RAKKRGLPQ+
Sbjct: 206 QADSNKISLRAKKRGLPQL 224
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 62/78 (79%), Gaps = 3/78 (3%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---R 470
+ E LAQS+FDHIPVGVGS+GIIPMNARDL+EALEMGMDWSLREGY WAEDKEH E R
Sbjct: 144 MKETLAQSLFDHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGR 203
Query: 471 LAQSMFDHIPVGVGSKGI 488
+ Q+ + I + +G+
Sbjct: 204 MLQADSNKISLRAKKRGL 221
>gi|268563869|ref|XP_002638955.1| Hypothetical protein CBG22190 [Caenorhabditis briggsae]
Length = 505
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/477 (52%), Positives = 305/477 (63%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRS------- 53
MNVEG F+VN LE+LM +EL+ SC +GGFLP V+QIANVA+LPGIVG S
Sbjct: 30 MNVEGRFYVNSRLEQLMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIH 89
Query: 54 --------------VGLPDVHSVPSTQWLSDNT---MRSSNIWK------RSPLT----- 85
VG P+ P N + +N+++ + LT
Sbjct: 90 SGYGFSIGNIAAFDVGNPEAVISPGGVGFDINCGVRLLRTNLFEEDVKPVKEQLTQSLFD 149
Query: 86 ---LGAGNHYAEIQIVDEIYD--------------KWAASKMGIEDVGQVC------VMI 122
+G G+ A + ++ + WA K E+ G++ V +
Sbjct: 150 HIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASKVSM 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAEIQ+VDEIYDK AAS MGI+ GQV VM+H GSRG GHQ
Sbjct: 210 RAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLGHQ 268
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
VATD+LV+MEKAM RD I ND+QLACARINS + K + + +
Sbjct: 269 VATDSLVEMEKAMARDGIFVNDKQLACARINSTEGKNYFAGMAAAANFAWVNRSCITFCV 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ + L VHRKG+TRAFP HHPLI
Sbjct: 329 RNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRKLCVHRKGATRAFPAHHPLI 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQL GQPVLIGG+MGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRR + + V
Sbjct: 389 PVDYQLIGQPVLIGGSMGTCSYVLTGTEQGMVETFGTTCHGAGRALSRAKSRRTITWDSV 448
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ L+ + ISIR+ASPKL+MEEAPESYKNVTDVVDTCH+ GIS K KLRP+AVIKG
Sbjct: 449 IDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDTCHSAGISNKAVKLRPIAVIKG 505
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+L QS+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY W
Sbjct: 127 LRTNLFEEDVKPVKEQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSW 186
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML AD SKVSMRAKKRGLPQ+
Sbjct: 187 AEDKEHCEEYGRMLQADASKVSMRAKKRGLPQL 219
>gi|312087377|ref|XP_003145448.1| hypothetical protein LOAG_09873 [Loa loa]
Length = 287
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/282 (76%), Positives = 238/282 (84%), Gaps = 6/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNHY E+Q+VDEIYD++AAS+MGI+ +GQVCVMIH GSRG GHQVATD+LV MEKAMKR
Sbjct: 6 AGNHYGEVQVVDEIYDEYAASRMGIDRLGQVCVMIHCGSRGLGHQVATDSLVVMEKAMKR 65
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
DNI NDRQLACARINS K A A F AFAK FNT+PDDL
Sbjct: 66 DNIIVNDRQLACARINSVEGQDYLKGMAAAANFAWVNRSCMTFCARQAFAKVFNTSPDDL 125
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DMHVIYDVSHNIAK EEH+VDG+ K L VHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG
Sbjct: 126 DMHVIYDVSHNIAKIEEHLVDGRPKQLCVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 185
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGTCSYVLTGT++GM ETF +TCHGAGR+LSRAKSRRN+D+QEVLN++++ GISIRVAS
Sbjct: 186 TMGTCSYVLTGTQQGMDETFATTCHGAGRSLSRAKSRRNIDFQEVLNQMQAMGISIRVAS 245
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
PKLVMEEAPESYKNVTDVV+TCH GISKKT KLRP+AVIKG
Sbjct: 246 PKLVMEEAPESYKNVTDVVNTCHEAGISKKTVKLRPIAVIKG 287
>gi|307110210|gb|EFN58446.1| hypothetical protein CHLNCDRAFT_55997 [Chlorella variabilis]
Length = 487
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/463 (54%), Positives = 302/463 (65%), Gaps = 58/463 (12%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVA----------ALPGI- 49
M+V GVF+VND L+ L+ EEL+ C+ G GGFLP VKQ+ANVA ALP +
Sbjct: 31 MSVPGVFYVNDRLKGLLFEELQAYCQRGEHGGFLPAVKQLANVAALPGIVKKSIALPDVH 90
Query: 50 --VGRSVG------LPDVHSVPS-----------TQWLSDNTMRSSNIWKRSPLTLGAGN 90
G ++G + D +V S + + N S R L +
Sbjct: 91 SGYGFAIGNVAAFDMADPQAVVSPGGVGFDINCGVRLIRTNLTESDVADVREQLAQALFD 150
Query: 91 HY-----AEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF--GHQVATAGNHYAEI 143
H ++ I D A +MG++ + SR G+ A H+ E
Sbjct: 151 HIPVGVGSQGIIPTTARDLEEALEMGMD------WSLREASRRLQGGYSWAQDKEHWEEY 204
Query: 144 ---------QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
++VDE++D+ AA KMGI+ VGQVCVMIHSGSRG GHQVATDALV ME+AM
Sbjct: 205 GGMVGGEPSKVVDEVFDRVAARKMGIDQVGQVCVMIHSGSRGLGHQVATDALVGMERAMA 264
Query: 195 RDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
RD I TNDRQLACARI S + + A A + + AFAK F +TPDD
Sbjct: 265 RDGILTNDRQLACARIGSQEGQDYLTAMACAANYAWVNRSSMTFLCRQAFAKMFGSTPDD 324
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
LDMHV+YDVSHNIAK EEH+VDG+ KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG
Sbjct: 325 LDMHVVYDVSHNIAKVEEHLVDGQLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 384
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
GTMGTCSYVLTGTEKGM ETFGSTCHGAGRA SR SR LDYQ+VL+ L+++GI+IRVA
Sbjct: 385 GTMGTCSYVLTGTEKGMGETFGSTCHGAGRARSRNNSRNKLDYQQVLDALKTKGIAIRVA 444
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
SPKLVMEEAPESYK+V++VVDTCH+ GISKKT KLRP+AV+KG
Sbjct: 445 SPKLVMEEAPESYKDVSEVVDTCHSAGISKKTVKLRPIAVVKG 487
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 68/92 (73%), Gaps = 13/92 (14%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLRE-------GYIWAEDKEHC 521
E+LAQ++FDHIPVGVGS+GIIP ARDLEEALEMGMDWSLRE GY WA+DKEH
Sbjct: 142 EQLAQALFDHIPVGVGSQGIIPTTARDLEEALEMGMDWSLREASRRLQGGYSWAQDKEHW 201
Query: 522 EEYGRMLNADPSKV------SMRAKKRGLPQV 547
EEYG M+ +PSKV + A+K G+ QV
Sbjct: 202 EEYGGMVGGEPSKVVDEVFDRVAARKMGIDQV 233
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 52/63 (82%), Gaps = 7/63 (11%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLRE-------GYIWAEDKE 466
+ E+LAQ++FDHIPVGVGS+GIIP ARDLEEALEMGMDWSLRE GY WA+DKE
Sbjct: 140 VREQLAQALFDHIPVGVGSQGIIPTTARDLEEALEMGMDWSLREASRRLQGGYSWAQDKE 199
Query: 467 HFE 469
H+E
Sbjct: 200 HWE 202
>gi|298709060|emb|CBJ31009.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 504
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/477 (52%), Positives = 299/477 (62%), Gaps = 68/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGL---- 56
M V G F+ ND LEKL EELR GGFLP VKQIANVAALPG+V S+GL
Sbjct: 30 MKVPGYFYANDRLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVH 89
Query: 57 -----------------PDVHSVPS-----------------------------TQWLSD 70
PD P TQ L D
Sbjct: 90 SGYGFAVGNVAAFDMADPDAVVSPGGVGFDINCGVRLVRTNLTLDDVLPVKEELTQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVCVMIHSGSR 127
+ P+T N E+ I + E Y W K E+ G++ + +R
Sbjct: 150 HIPVGVGTKGMVPITAADLNDVLEMGIDWSIREGY-AWVEDKEHCEEYGRMLQADPTKAR 208
Query: 128 -----GFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
G Q+ T AGNHYAEIQ+V+E+YD+ AA KMGI+ V QVC+MIHSGSRG GHQ
Sbjct: 209 RAKIRGL-PQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQ 267
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD------LDMHVI 234
VATDALV ME AM RDNI+ NDRQLACA+INS + + + + + +
Sbjct: 268 VATDALVLMEAAMARDNIDINDRQLACAKINSQEGQDYLAGMAAAANYAWVNRAMMTFLT 327
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF+K+F T ++LDMHV+YDVSHNIAK E+H+VDG KTLLVHRKG+TRAFPPHHPLI
Sbjct: 328 RRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLI 387
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQ TGQPV++GGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA SR +SR+ LDY+ V
Sbjct: 388 PVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAV 447
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L LE +GISIRVASPKLVMEEAPESYK+VT+VV+TCH G+S + KLRP+AVIKG
Sbjct: 448 LGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 504
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 67/79 (84%), Gaps = 1/79 (1%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L QS+FDHIPVGVG+KG++P+ A DL + LEMG+DWS+REGY W EDKEHCEEYGRML
Sbjct: 141 EELTQSLFDHIPVGVGTKGMVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+K + RAK RGLPQ+
Sbjct: 201 QADPTK-ARRAKIRGLPQL 218
>gi|344237443|gb|EGV93546.1| UPF0027 protein C22orf28-like [Cricetulus griseus]
Length = 440
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/321 (70%), Positives = 252/321 (78%), Gaps = 15/321 (4%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 121 WAEDKEHCEEYGRMLQADPNKVSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAK 179
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSN--- 213
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S
Sbjct: 180 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 239
Query: 214 ---KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
K A A + + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 240 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 299
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 300 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 359
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 360 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 419
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 420 CHDAGISKKAIKLRPIAVIKG 440
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 76 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 135
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 136 QADPNKVSPRAKKRGLPQL 154
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHS 61
+KQI NVAALPGIV RS+GLPDVHS
Sbjct: 1 MKQIGNVAALPGIVHRSIGLPDVHS 25
>gi|326428595|gb|EGD74165.1| hypothetical protein PTSG_06172 [Salpingoeca sp. ATCC 50818]
Length = 519
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/483 (52%), Positives = 299/483 (61%), Gaps = 79/483 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG +VN+ L LM EEL+ + VGGFLP +KQ
Sbjct: 44 MRVEGRVYVNEALNSLMFEELQQHSQAHGVGGFLPALKQVANVAALPGIVGHSVGLPDIH 103
Query: 40 ------IANVAAL----------PGIVGRSVGLP--------DVHSV-PSTQWLSDNTMR 74
I N+AA PG VG + DV V P + L+ +
Sbjct: 104 AGYGFAIGNMAAFDMDNPEAVVSPGGVGFDINCGVRLLRTNLDVGDVEPVKEQLAQS--- 160
Query: 75 SSNIWKRSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC--- 119
++ P+ +G+ G +Q ++E + W K E+ G++
Sbjct: 161 ---LFDHIPVGVGSKGVVPMTVQDLEEALEMGMDWSLREGYAWPEDKEHCEEYGRMLQAD 217
Query: 120 ---VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 174
V + RG Q+ T AGNHYAEIQ+V+EIYDK AA+KMGI GQVCVMIHSGS
Sbjct: 218 ASKVSTRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKHAANKMGINRTGQVCVMIHSGS 276
Query: 175 RGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------D 228
RG GHQVATDAL M AMKRD IE NDRQLACARI S + + + K +
Sbjct: 277 RGLGHQVATDALTAMANAMKRDGIEVNDRQLACARIGSEEGQNYLKSMAAAANYAWVNRS 336
Query: 229 LDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP 288
+ AFAKQF TTP+DLDMHVIYDVSHNIAK E+H VDGK + LLVHRKGSTRAFP
Sbjct: 337 TMTFLARQAFAKQFKTTPEDLDMHVIYDVSHNIAKVEKHWVDGKLRNLLVHRKGSTRAFP 396
Query: 289 PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRN 348
PHHPLIPVDYQL GQPVL+GGTMGTCSY+LTGTE+G +TFGSTCHGAGRA SRAKSRR
Sbjct: 397 PHHPLIPVDYQLIGQPVLVGGTMGTCSYILTGTEQGFADTFGSTCHGAGRAQSRAKSRRT 456
Query: 349 LDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAV 408
LDYQ+VL L +GI+IRVASPKLV EEAPESYK+V++VVDTCHA GISKK KL+P+AV
Sbjct: 457 LDYQDVLANLNKKGIAIRVASPKLVQEEAPESYKDVSEVVDTCHAAGISKKAVKLKPIAV 516
Query: 409 IKG 411
IKG
Sbjct: 517 IKG 519
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG++PM +DLEEALEMGMDWSLREGY W EDKEHCEEYGRML
Sbjct: 155 EQLAQSLFDHIPVGVGSKGVVPMTVQDLEEALEMGMDWSLREGYAWPEDKEHCEEYGRML 214
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SKVS RAKKRGLPQ+
Sbjct: 215 QADASKVSTRAKKRGLPQL 233
>gi|145351193|ref|XP_001419969.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|327488442|sp|A4S3S3.1|RTCB_OSTLU RecName: Full=tRNA-splicing ligase RtcB homolog
gi|144580202|gb|ABO98262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 514
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/481 (52%), Positives = 304/481 (63%), Gaps = 74/481 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSC---RPGMVGGFLPGVKQIANVAAL----------- 46
M V G +VN+ L +L+L+ELR C R G GG+ P VKQIANVAAL
Sbjct: 38 MRVPGEIYVNERLRELVLDELRAYCDEDRRG--GGYSPAVKQIANVAALPGVVRASIALP 95
Query: 47 --------------------------PGIVGRSVG---------LPDVHSVPSTQWLSDN 71
PG VG + L + P + L+ +
Sbjct: 96 DVHSGYGFAIGNVAAFDCGDDDAIVSPGGVGFDINCGVRLLRTNLTEAEVGPVKEALAQS 155
Query: 72 TMR-------SSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC----- 119
S I SP L A + E Y WA K E+ G++
Sbjct: 156 LFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGY-AWAEDKEHTEEYGRMLNADPS 214
Query: 120 -VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 176
V + RG Q+ T AGNHYAEIQ+VDEIYD++AA KMGI+ VGQ+C+MIHSGSRG
Sbjct: 215 KVSARAKKRGL-PQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQICIMIHSGSRG 273
Query: 177 FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH---- 232
GHQVATD+L ME+AM+RD IE NDRQLACA+I+S + + + + ++
Sbjct: 274 LGHQVATDSLTAMERAMERDGIEVNDRQLACAKISSQEGQDYLAAMACAANYAWVNRSSM 333
Query: 233 --VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
+ AFAK F PD+LDMHV+YDVSHNIAK EEH+VDG+ KTLLVHRKGSTRAFPPH
Sbjct: 334 TFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHIVDGEMKTLLVHRKGSTRAFPPH 393
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
HPLIPVDYQ TGQPVLIGGTMGTCSY+LTGTEKGM++TFGSTCHGAGRA SR KSR L
Sbjct: 394 HPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQ 453
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
Y++VL KL+++GI+IRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+K
Sbjct: 454 YEDVLAKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVK 513
Query: 411 G 411
G
Sbjct: 514 G 514
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR AE E LAQS+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY W
Sbjct: 136 LRTNLTEAEVGPVKEALAQSLFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGYAW 195
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEH EEYGRMLNADPSKVS RAKKRGLPQ+
Sbjct: 196 AEDKEHTEEYGRMLNADPSKVSARAKKRGLPQM 228
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E LAQS+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEH E +
Sbjct: 148 VKEALAQSLFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGYAWAEDKEHTEEYGR 207
Query: 474 SMFDHIPVGVGSK 486
M + P V ++
Sbjct: 208 -MLNADPSKVSAR 219
>gi|341880610|gb|EGT36545.1| hypothetical protein CAEBREN_06674 [Caenorhabditis brenneri]
Length = 505
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/477 (52%), Positives = 303/477 (63%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAA----------LPGI- 49
MNVEG F+VN +LE+LM +EL+ SC +GGFLP V+QIANVA+ LP I
Sbjct: 30 MNVEGRFYVNKNLEQLMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIH 89
Query: 50 --VGRSVG------LPDVHSVPS-----------TQWLSDNTMRSSNIWKRSPLT----- 85
G S+G + + SV S + L N + LT
Sbjct: 90 SGYGFSIGNIAAFDVSNPESVISPGGVGFDINCGVRLLRTNLFEEDVKPVKEQLTQSLFD 149
Query: 86 ---LGAGNHYAEIQIVDEIYD--------------KWAASKMGIEDVGQVC------VMI 122
+G G+ A + ++ + WA K E+ G++ V +
Sbjct: 150 HIPVGVGSKGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASKVSM 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAE+Q+VDEIYDK AAS MGI+ GQV VM+H GSRG GHQ
Sbjct: 210 RAKKRGL-PQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLGHQ 268
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
VATD+LV+ME+AM RD I ND+QLACARINS + K + + +
Sbjct: 269 VATDSLVEMERAMARDGIMVNDKQLACARINSQEGKDYFAGMAAAANFAWVNRSCITFCV 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+AF K F +PDD+DM VIYDVSHN+AK EEHMVDG+ K L VHRKG+TRAFP HHPLI
Sbjct: 329 RNAFQKTFGMSPDDMDMQVIYDVSHNVAKMEEHMVDGRPKKLCVHRKGATRAFPAHHPLI 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQL GQPVLIGG+MGTCSYVLTGTEKGM ETFG+TCHGAGRALSRAKSRR + + V
Sbjct: 389 PVDYQLIGQPVLIGGSMGTCSYVLTGTEKGMVETFGTTCHGAGRALSRAKSRRTITWDSV 448
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ L+ + ISIR+ASPKL+MEEAPESYKNVTDVVDTC A GISKK KLRP+AVIKG
Sbjct: 449 IDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDTCDAAGISKKAVKLRPIAVIKG 505
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+L QS+FDHIPVGVGSKG IPM A DL E LEMGMDW+LREGY W
Sbjct: 127 LRTNLFEEDVKPVKEQLTQSLFDHIPVGVGSKGAIPMLASDLVECLEMGMDWTLREGYSW 186
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML AD SKVSMRAKKRGLPQ+
Sbjct: 187 AEDKEHCEEYGRMLQADASKVSMRAKKRGLPQL 219
>gi|320168093|gb|EFW44992.1| HSPC117 [Capsaspora owczarzaki ATCC 30864]
Length = 516
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/477 (53%), Positives = 297/477 (62%), Gaps = 70/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVK---------- 38
M V+G F+VN HL++LM +EL+ VGGFL PG+
Sbjct: 44 MKVDGCFYVNQHLQELMFDELQQFSDSRGVGGFLPAVKQIANVAALPGIVGRSIGLPDIH 103
Query: 39 -----QIANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + P + L+
Sbjct: 104 SGYGFAIGNMAAFDMNDPEAIVSPGGVGFDINCGVRLIRTNLTEKEVGPVKEELAQALFD 163
Query: 75 SSNIWKRS----PLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC----VMIH 123
+ S P+T+ E+ + + E Y WA K E+ G++ M+
Sbjct: 164 HIPVGVGSKGVIPMTMHNLEEALEMGMDWSLREGY-AWAEDKEHCEEYGRMLQANPAMVS 222
Query: 124 SGSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
++ G Q+ T AGNHY EIQ+VDEIYD AA KMGI+ GQVC+M+HSGSRG GHQ
Sbjct: 223 QRAKKRGLPQLGTLGAGNHYCEIQVVDEIYDAHAARKMGIDQKGQVCIMVHSGSRGLGHQ 282
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVI 234
VATD+LV MEKAM+RD IE NDRQLACARI S + + A A + +
Sbjct: 283 VATDSLVSMEKAMRRDGIEVNDRQLACARIQSKEGQHYLQGMAAAANYAWVNRSSMTFLT 342
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AFAK FN+TPDDLDMHVIYDVSHNIAK EEHMVD TLLVHRKGSTRAFPPHHPLI
Sbjct: 343 RQAFAKIFNSTPDDLDMHVIYDVSHNIAKVEEHMVD---VTLLVHRKGSTRAFPPHHPLI 399
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQL GQPVLIGGTMGTCS+VLTGTEKGM ETFGSTCHGAGRA SR KSRR LDYQ+V
Sbjct: 400 PVDYQLIGQPVLIGGTMGTCSFVLTGTEKGMLETFGSTCHGAGRAQSRNKSRRTLDYQDV 459
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ L +GISIRVASPKLV EEAPESYK+V DVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 LDSLAQKGISIRVASPKLVTEEAPESYKDVIDVVETCHQAGISKKAIKLRPIAVIKG 516
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 76/91 (83%), Gaps = 2/91 (2%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LAQ++FDHIPVGVGSKG+IPM +LEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 155 EELAQALFDHIPVGVGSKGVIPMTMHNLEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 214
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGSSKYC 559
A+P+ VS RAKKRGLPQ+ G G + YC
Sbjct: 215 QANPAMVSQRAKKRGLPQLGT-LGAG-NHYC 243
>gi|308808632|ref|XP_003081626.1| Zgc:76871 (ISS) [Ostreococcus tauri]
gi|122157076|sp|Q00ZY2.1|RTCB_OSTTA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|116060091|emb|CAL56150.1| Zgc:76871 (ISS) [Ostreococcus tauri]
Length = 515
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/480 (52%), Positives = 300/480 (62%), Gaps = 71/480 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGM--VGGFLPGVKQIAN---------------- 42
M V+GV +VN L L+LEEL C GG+ P +KQIAN
Sbjct: 38 MRVDGVVYVNAALRALVLEELAAYCDATAHRGGGYSPALKQIANVAALPGVVGASIALPD 97
Query: 43 -----------VAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNT 72
VAA PG VG + L + P + L+ +
Sbjct: 98 VHSGYGFAIGNVAAFDVGDETSIVSPGGVGFDINCGVRLLRTNLTEAEVGPVKEALAQSL 157
Query: 73 MR-------SSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------ 119
S I +P L A + E Y WA K E+ G++
Sbjct: 158 FDHIPVGVGSRGIIPTTPAALEAVLEMGMDWSLREGY-AWAEDKEHTEEYGRMLNADPSK 216
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIYD++AA KMGI+ VGQVC+MIHSGSRG
Sbjct: 217 VSARAKKRGL-PQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQVCIMIHSGSRGL 275
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH----- 232
GHQVATD+L ME+AM+RD IE NDRQLACARI+S + + + + ++
Sbjct: 276 GHQVATDSLTAMERAMERDGIEVNDRQLACARISSQEGQDYLAAMACAANYAWVNRSSMT 335
Query: 233 -VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK F PD+LDMHV+YDVSHNIAK EEHMVDG+ KTLLVHRKGSTRAFPPHH
Sbjct: 336 FLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHMVDGEMKTLLVHRKGSTRAFPPHH 395
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQ TGQPVLIGGTMGTCSY+LTGTEKGM++TFGSTCHGAGRA SR KSR L Y
Sbjct: 396 PLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQY 455
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++VL KL+++GI+IRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 456 EDVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG 515
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 72/93 (77%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR AE E LAQS+FDHIPVGVGS+GIIP LE LEMGMDWSLREGY W
Sbjct: 137 LRTNLTEAEVGPVKEALAQSLFDHIPVGVGSRGIIPTTPAALEAVLEMGMDWSLREGYAW 196
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEH EEYGRMLNADPSKVS RAKKRGLPQ+
Sbjct: 197 AEDKEHTEEYGRMLNADPSKVSARAKKRGLPQM 229
>gi|106073274|gb|ABF81975.1| hypothetical protein [Sus scrofa]
Length = 505
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/321 (69%), Positives = 248/321 (77%), Gaps = 15/321 (4%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSN--- 213
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 214 ---KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
K A A + + AFAK FNTTPDDLD+HVIYDVSHNI K E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLNRQAFAKVFNTTPDDLDLHVIYDVSHNIVKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
K++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMG CSYVLTGTE+GM ETFG
Sbjct: 365 RKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGACSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL G +IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGTAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLR GY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLRGGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
>gi|66816787|ref|XP_642393.1| UPF0027 family protein [Dictyostelium discoideum AX4]
gi|74856587|sp|Q54Y09.1|RTCB_DICDI RecName: Full=tRNA-splicing ligase RtcB homolog
gi|60470433|gb|EAL68413.1| UPF0027 family protein [Dictyostelium discoideum AX4]
Length = 508
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/478 (51%), Positives = 296/478 (61%), Gaps = 70/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNV+G+ +VND ++ + EEL + G V GFLP VKQIA
Sbjct: 34 MNVDGMIYVNDSIKDYLYEELEQYSKRG-VSGFLPAVKQIANVASLPGIVGHSLGMPDIH 92
Query: 42 --------NVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
NVAA PG VG + D+ + Q L D
Sbjct: 93 SGYGFSIGNVAAFDTEDPLSIVSPGGVGFDINCGVRLLRTNLTEKDIEPIKEQLCQSLFD 152
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ P+ + N E+ + + E Y W K E+ G++ V
Sbjct: 153 HVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGY-AWVEDKEHCEEYGRMLNADPTKVS 211
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHY E+Q+VDEIYDK AA+KMGI+ GQ+C+MIHSGSRG GH
Sbjct: 212 ERAKKRGL-PQLGTLGAGNHYLEVQVVDEIYDKAAANKMGIDRQGQICIMIHSGSRGLGH 270
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHV 233
QVATD+L MEKAM RD+I ND+QLAC+RINS + + A A F +
Sbjct: 271 QVATDSLTLMEKAMARDHIHLNDKQLACSRINSTEGQDYLSGMAAAANFAWVNRQSMTFL 330
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FN+TPDDLDMHVIYDVSHNIAK EEH V+G+ K LLVHRKG+TRAF PHHPL
Sbjct: 331 TRQAFAKAFNSTPDDLDMHVIYDVSHNIAKFEEHNVNGRPKKLLVHRKGATRAFAPHHPL 390
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ TGQPVLIGGTMGTCSYVLTGTE GM ETFGSTCHGAGR+ SR KSR NL Y +
Sbjct: 391 IPVDYQFTGQPVLIGGTMGTCSYVLTGTELGMNETFGSTCHGAGRSCSRNKSRNNLSYTD 450
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+++GISIRVASPKLVMEEAPESYK+V V++TCH GISKK+ KLRP+AVIKG
Sbjct: 451 VLDSLQAKGISIRVASPKLVMEEAPESYKDVVQVIETCHKAGISKKSVKLRPIAVIKG 508
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEHCEEYGRML
Sbjct: 144 EQLCQSLFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGRML 203
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVS RAKKRGLPQ+
Sbjct: 204 NADPTKVSERAKKRGLPQL 222
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEH E +
Sbjct: 142 IKEQLCQSLFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGR 201
Query: 474 SMFDHIPVGVGSK 486
M + P V +
Sbjct: 202 -MLNADPTKVSER 213
>gi|412992783|emb|CCO18763.1| hypothetical protein Bathy11g01950 [Bathycoccus prasinos]
Length = 530
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/479 (51%), Positives = 300/479 (62%), Gaps = 71/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M V G+F+VN L L EEL+ G GGF LPG+
Sbjct: 55 MRVPGIFYVNKFLAGLTFEELKQHAERGRAGGFLPAVKQIANVASLPGIVGRSIALPDVH 114
Query: 39 -----QIANVAAL----------PGIVGRSV--GLPDVHS---VPSTQWLSDNTMRSSNI 78
I NVAA PG VG + G+ V + Q L + ++ +
Sbjct: 115 SGYGFAIGNVAAFDVNDPKAVVSPGGVGFDINCGVRLVRTNLTEAEVQPLKEEVAQA--L 172
Query: 79 WKRSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------V 120
+ P+ +G G + + +D + W K E+ G++ V
Sbjct: 173 FDHIPVGVGGKGIIPVDAKTLDTALEMGIDWCVREGYAWIEDKERCEENGRMLNADPSKV 232
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ RG Q+ T AGNHYAEIQ+VDEIYD++AA KMGI+ +GQV VMIHSGSRG G
Sbjct: 233 SQRAKKRGL-PQMGTLGAGNHYAEIQVVDEIYDQFAAKKMGIDKIGQVVVMIHSGSRGLG 291
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQVATDALV+MEKAM +D +E NDRQLACARINS + K + + ++
Sbjct: 292 HQVATDALVEMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMACAANYAWVNRQSMTF 351
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAK FN T + LDMHV+YDVSHNIAK EEH+VDG+ KTLLVHRKGSTRAFPPHHP
Sbjct: 352 LCRQAFAKTFNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLVHRKGSTRAFPPHHP 411
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQ TGQPVL+GGTMGTCSYVLTGTEKGM ETFGSTCHGAGRA SR SR+ L Y+
Sbjct: 412 LIPVDYQYTGQPVLVGGTMGTCSYVLTGTEKGMHETFGSTCHGAGRARSRHNSRQKLSYE 471
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL L+++GISIRVASPKLVMEEAPESYK+VT+VVDTCH GISKK KLRP+AVIKG
Sbjct: 472 QVLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVDTCHDAGISKKCVKLRPIAVIKG 530
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R AE + E +AQ++FDHIPVGVG KGIIP++A+ L+ ALEMG+DW +REGY W
Sbjct: 152 VRTNLTEAEVQPLKEEVAQALFDHIPVGVGGKGIIPVDAKTLDTALEMGIDWCVREGYAW 211
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDKE CEE GRMLNADPSKVS RAKKRGLPQ+
Sbjct: 212 IEDKERCEENGRMLNADPSKVSQRAKKRGLPQM 244
>gi|452825584|gb|EME32580.1| hypothetical protein Gasu_03500 [Galdieria sulphuraria]
Length = 507
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/478 (51%), Positives = 306/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
M V G+F+VN LE+L+ EL+N C GM GGFLP VKQIA
Sbjct: 32 MRVPGIFYVNGKLEELVFSELQNFCEGGMTGGFLPAVKQIANVASLPGIVKASIAMPDVH 91
Query: 42 --------NVAAL----------PGIVGRSV--GLPDVHSVPSTQWLSDNT-MRSSNIWK 80
NVAA PG VG + G+ + + + + D + + ++
Sbjct: 92 SGYGFAIGNVAAFRMDDPEAIVSPGGVGFDINCGVRLLRTNLLEKDIQDKKELLAQTLFD 151
Query: 81 RSPLTLGAGN-------------HYAEIQIVDEIYDKWAASKMGIEDVGQVC------VM 121
P+ +G+ Y + E Y WA K E+ G++ V
Sbjct: 152 YIPVGVGSKGVIPVGSKQLEEVLQYGMDWSLREGYS-WAEDKEHCEEYGRLLQANPAKVS 210
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RGF Q+ T AGNHYAEIQ+VDEIYD +AA +MG+ + GQVC+MIHSGSRG GH
Sbjct: 211 SRARKRGF-PQLGTLGAGNHYAEIQVVDEIYDTFAAKRMGLVEKGQVCIMIHSGSRGLGH 269
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDAL ME+AM +D+++ NDRQLACARI S + + + + ++ +
Sbjct: 270 QVATDALQLMEEAMAKDHLKLNDRQLACARIQSKPGQDYLEAMAAAANYAFVNRSSMTFL 329
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AF+K F+ + DDLDMH++YDVSHNIAK EEH DGK LLVHRKG+TRAFPP+HPL
Sbjct: 330 TRQAFSKVFDVSADDLDMHLVYDVSHNIAKIEEHWYDGKPVQLLVHRKGATRAFPPYHPL 389
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ+TGQPVL+GGTMGTCSYVLTGTEKGM+ETFGSTCHGAGRA SR+ SRR LDYQ+
Sbjct: 390 IPVDYQVTGQPVLVGGTMGTCSYVLTGTEKGMEETFGSTCHGAGRAQSRSSSRRKLDYQD 449
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+LN L+++GISIRVASPKLV EEAPESYK+V++VVDTCH GISKK KLRPVAVIKG
Sbjct: 450 ILNNLKNKGISIRVASPKLVTEEAPESYKDVSEVVDTCHVAGISKKCVKLRPVAVIKG 507
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 76/93 (81%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + ++ E LAQ++FD+IPVGVGSKG+IP+ ++ LEE L+ GMDWSLREGY W
Sbjct: 129 LRTNLLEKDIQDKKELLAQTLFDYIPVGVGSKGVIPVGSKQLEEVLQYGMDWSLREGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGR+L A+P+KVS RA+KRG PQ+
Sbjct: 189 AEDKEHCEEYGRLLQANPAKVSSRARKRGFPQL 221
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%), Gaps = 3/63 (4%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---RL 471
E LAQ++FD+IPVGVGSKG+IP+ ++ LEE L+ GMDWSLREGY WAEDKEH E RL
Sbjct: 142 KELLAQTLFDYIPVGVGSKGVIPVGSKQLEEVLQYGMDWSLREGYSWAEDKEHCEEYGRL 201
Query: 472 AQS 474
Q+
Sbjct: 202 LQA 204
>gi|281206289|gb|EFA80478.1| UPF0027 family protein [Polysphondylium pallidum PN500]
Length = 518
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 238/477 (49%), Positives = 296/477 (62%), Gaps = 70/477 (14%)
Query: 2 NVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA-------------------- 41
NV+G+ +VND ++ L+ EEL C G GGFLP VKQIA
Sbjct: 45 NVDGMIYVNDSIKDLIFEELEQHCTHGS-GGFLPAVKQIANVASLPGIVGHSLGMPDIHS 103
Query: 42 -------NVAAL----------PGIVGRSVGL-----------PDVHSVPSTQWLSDNTM 73
NVAA PG VG + D+ + T S
Sbjct: 104 GYGFSIGNVAAFDTENPKSIVSPGGVGFDINCGVRLLRTNLTEKDIDPIKETLCQSLFDH 163
Query: 74 RSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VMI 122
+ + + +G A +++ + E Y W K E+ G++ V
Sbjct: 164 IPVGVGSKGVIPMGTKALDAALELGLDWSLREGY-AWVEDKEHCEEYGRMLNADPSKVTE 222
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHY E+Q+VDEI++ AA KMG++ +GQ+C+MIHSGSRG GHQ
Sbjct: 223 RAKKRGL-PQLGTLGAGNHYLEVQVVDEIFNPSAAKKMGVDQIGQICIMIHSGSRGLGHQ 281
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------VI 234
VATDAL MEKAM RD I+ ND+QLACA INS + + + + ++ +
Sbjct: 282 VATDALTGMEKAMARDKIQINDKQLACAHINSQEGQDYLAGMAAAANFAWVNRQSMTFLA 341
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
FAK FN++PDDLDMHVIYDVSHNIAK EEH+VDG+ K LLVHRKG+TRAFPPHHPLI
Sbjct: 342 RQTFAKAFNSSPDDLDMHVIYDVSHNIAKFEEHVVDGRPKKLLVHRKGATRAFPPHHPLI 401
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQ TGQPVLIGGTMGT SYVLTGT+ GM+ETFGSTCHGAGR+ SR KSR NL YQ+V
Sbjct: 402 PVDYQFTGQPVLIGGTMGTSSYVLTGTDIGMRETFGSTCHGAGRSCSRNKSRNNLSYQDV 461
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L L +GISIR+ASPKL+MEEAPESYK+VT V++TCH GIS+K+FKLRP+AVIKG
Sbjct: 462 LTNLRDKGISIRIASPKLIMEEAPESYKDVTQVIETCHTAGISQKSFKLRPIAVIKG 518
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 70/79 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L QS+FDHIPVGVGSKG+IPM + L+ ALE+G+DWSLREGY W EDKEHCEEYGRML
Sbjct: 154 ETLCQSLFDHIPVGVGSKGVIPMGTKALDAALELGLDWSLREGYAWVEDKEHCEEYGRML 213
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKV+ RAKKRGLPQ+
Sbjct: 214 NADPSKVTERAKKRGLPQL 232
>gi|449015886|dbj|BAM79288.1| conserved unknown protein RtcB [Cyanidioschyzon merolae strain 10D]
Length = 506
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 249/482 (51%), Positives = 299/482 (62%), Gaps = 77/482 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
M V+G F+VN+ LE+L+ EELR +C G G F LPG+
Sbjct: 31 MRVDGAFYVNESLEELVFEELRVACGRGSAGSFLPAVKQVANVASLPGIVGYSLAMPDLH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I NVAA PG VG + D+ V Q L D
Sbjct: 91 SGYGFAIGNVAAFRTDDPEAVVSPGGVGFDINCGVRLLRTNLFENDLQPVREQVAQALFD 150
Query: 71 NTMRSSNIWKRSPLT-------LGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC---- 119
+ P T L +G ++ + E Y WA K E+ G++
Sbjct: 151 HLPVGVGSRGIIPTTSRDLEEALASGMDWS----LREGYS-WAEDKEHCEEYGRMLRANP 205
Query: 120 --VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSR 175
V + RG Q+ T AGNHYAEIQIVDEI+D+ AA KMGIE++ QV VMIHSGSR
Sbjct: 206 EKVSARAKKRGL-PQLGTLGAGNHYAEIQIVDEIFDQAAAKKMGIEELCQVVVMIHSGSR 264
Query: 176 GFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH--- 232
G GHQVATDALV+ME+AM RD I+ NDRQLACARINS + + + + ++
Sbjct: 265 GLGHQVATDALVEMERAMNRDRIQVNDRQLACARINSREGQDYIAAMAAAANFAWVNRSS 324
Query: 233 ---VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP 289
+ AFAK FN++PDDLDMHV+YDVSHNIAK EEH+VDG+ LLVHRKG+TRAFPP
Sbjct: 325 MTFLARQAFAKTFNSSPDDLDMHVVYDVSHNIAKFEEHLVDGRPVELLVHRKGATRAFPP 384
Query: 290 HHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL 349
+HPL+P+ YQ TGQPVL+GGTMGTCSYVLTGTE+ M ETFGSTCHGAGRA SR +SRR L
Sbjct: 385 YHPLMPISYQETGQPVLVGGTMGTCSYVLTGTERAMAETFGSTCHGAGRARSRNESRRKL 444
Query: 350 DYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409
DY +VL LE +GISIRVASPKLV EEAPESYK+VT+VV+TCHA GIS K KLRPVAVI
Sbjct: 445 DYHQVLENLERKGISIRVASPKLVSEEAPESYKDVTEVVNTCHAAGISCKCVKLRPVAVI 504
Query: 410 KG 411
KG
Sbjct: 505 KG 506
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E++AQ++FDH+PVGVGS+GIIP +RDLEEAL GMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 142 EQVAQALFDHLPVGVGSRGIIPTTSRDLEEALASGMDWSLREGYSWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
A+P KVS RAKKRGLPQ+
Sbjct: 202 RANPEKVSARAKKRGLPQL 220
>gi|159482936|ref|XP_001699521.1| predicted protein [Chlamydomonas reinhardtii]
gi|327488437|sp|A8JC00.1|RTCB_CHLRE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|158272788|gb|EDO98584.1| predicted protein [Chlamydomonas reinhardtii]
Length = 476
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/478 (51%), Positives = 296/478 (61%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVKQ--------- 39
M+V G F+VND L+ L+ EEL+ + G GGFL PG+ +
Sbjct: 1 MHVPGTFYVNDALKGLLFEELQQAVVRGDHGGFLPAVKQLANVAALPGIVKRSIALPDVH 60
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I NVAA PG VG + L + P + L+
Sbjct: 61 SGYGFAIGNVAAFDMDNPEAVVSPGGVGFDINCGVRLLRTNLTEAEVGPVREQLAQALFD 120
Query: 75 SSNIWKRS----PLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ S P T E+ + + E Y WA K E+ G++ V
Sbjct: 121 HIPVGVGSQGIIPTTAKDMESALELGMDWSLREGY-AWAEDKEHCEEYGRMLNADPRYVS 179
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAE+Q+VDE+YD AA +MGI+ GQV VMIHSGSRG GH
Sbjct: 180 SRAKKRGL-PQMGTLGAGNHYAEVQVVDEVYDAVAARRMGIDTPGQVVVMIHSGSRGLGH 238
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHV 233
QVATDALV ME+AM RD I TNDRQLACARINS + +A+ K + + +
Sbjct: 239 QVATDALVAMERAMARDGIITNDRQLACARINSEEGQAYLKAMSCAANYAWVNRSSMTFL 298
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F +TPDDLDMHV+YDVSHNIAK E+H VDG+ + LLVHRKGSTRAFPPHHPL
Sbjct: 299 ARQAFAKIFKSTPDDLDMHVVYDVSHNIAKVEQHCVDGQHRRLLVHRKGSTRAFPPHHPL 358
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IP DYQL GQPVL+GGTMGT SYVLTGTE+G ETFGSTCHGAGRA SR SR LDYQ+
Sbjct: 359 IPADYQLIGQPVLVGGTMGTSSYVLTGTEQGFTETFGSTCHGAGRARSRNNSRNKLDYQD 418
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+++GI+IRVASPKLVMEEAPESYK+V++VVDTCH GISKK KLRP+AVIKG
Sbjct: 419 VLDNLKAKGIAIRVASPKLVMEEAPESYKDVSEVVDTCHQAGISKKAVKLRPIAVIKG 476
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 76/93 (81%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR AE E+LAQ++FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY W
Sbjct: 98 LRTNLTEAEVGPVREQLAQALFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAW 157
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRMLNADP VS RAKKRGLPQ+
Sbjct: 158 AEDKEHCEEYGRMLNADPRYVSSRAKKRGLPQM 190
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ++FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY WAEDKEH E +
Sbjct: 110 VREQLAQALFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAWAEDKEHCEEYGR 169
Query: 474 SMFDHIPVGVGSK 486
M + P V S+
Sbjct: 170 -MLNADPRYVSSR 181
>gi|330846240|ref|XP_003294952.1| hypothetical protein DICPUDRAFT_90903 [Dictyostelium purpureum]
gi|325074475|gb|EGC28523.1| hypothetical protein DICPUDRAFT_90903 [Dictyostelium purpureum]
Length = 491
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/470 (51%), Positives = 287/470 (61%), Gaps = 68/470 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
MNV+G+ +VND ++ + +EL G V GFLP VKQ
Sbjct: 31 MNVDGMIYVNDSIKDYLYDELEQYSIRG-VNGFLPAVKQIANVASLPGIVGHSLGMPDIH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I NVAA PG VG + D+ + Q L D
Sbjct: 90 SGYGFSIGNVAAFDTEDPLSVVSPGGVGFDINCGVRLLRTNLTEKDIEPIKEQLCQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVCVMIHSGSR 127
+ P+ + N E+ I + E Y W K + + + G+
Sbjct: 150 HVPVGVGSKGVIPMNMKTLNQALEMGIDWSMGEGY-AWCEDKEHFSERAKKRGLPQLGTL 208
Query: 128 GFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV 187
G AGNHY E+Q+VDEI+DK AA+KMG++ GQ+C+MIHSGSRG GHQVATDAL
Sbjct: 209 G-------AGNHYLEVQVVDEIFDKAAANKMGVDRKGQICIMIHSGSRGLGHQVATDALT 261
Query: 188 QMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQ 241
MEKAM RD+I ND+QLAC+RINS + + + A F + AFAK
Sbjct: 262 LMEKAMARDHIHLNDKQLACSRINSQEGQDYLAGMSAAANFAWVNRQSMTFLTRQAFAKA 321
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
FN+TPDDLDMHVIYDVSHNIAK E+H V+G+ K LLVHRKG+TRAF PHHPLIPVDYQ T
Sbjct: 322 FNSTPDDLDMHVIYDVSHNIAKFEDHTVNGRPKRLLVHRKGATRAFAPHHPLIPVDYQFT 381
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLIGGTMGTCSYVLTGTE GMQETFGSTCHGAGRA SR KSR NL Y +VL+ L+S+
Sbjct: 382 GQPVLIGGTMGTCSYVLTGTELGMQETFGSTCHGAGRACSRNKSRNNLSYTDVLDSLQSK 441
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GISIRVASPKLVMEEAPESYK+V V++TCH GISKK KLRP+ VIKG
Sbjct: 442 GISIRVASPKLVMEEAPESYKDVVQVIETCHTAGISKKAIKLRPIMVIKG 491
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 56/79 (70%), Gaps = 14/79 (17%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWS+ EGY W EDKEH E
Sbjct: 141 EQLCQSLFDHVPVGVGSKGVIPMNMKTLNQALEMGIDWSMGEGYAWCEDKEHFSE----- 195
Query: 529 NADPSKVSMRAKKRGLPQV 547
RAKKRGLPQ+
Sbjct: 196 ---------RAKKRGLPQL 205
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWS+ EGY W EDKEHF A+
Sbjct: 139 IKEQLCQSLFDHVPVGVGSKGVIPMNMKTLNQALEMGIDWSMGEGYAWCEDKEHFSERAK 198
>gi|313232095|emb|CBY09206.1| unnamed protein product [Oikopleura dioica]
Length = 507
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 249/479 (51%), Positives = 298/479 (62%), Gaps = 70/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNS-CRPGMVGGFLPGVKQ-------------------- 39
MNV FF N LE LM +E ++S R GGFLP +KQ
Sbjct: 31 MNVPAYFFCNGALEPLMFDEYKSSFSRADGGGGFLPAMKQLANVAALPGIVNASIGMPDV 90
Query: 40 -------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLS 69
I N+AA PG VG + DV V Q L
Sbjct: 91 HAGYGFAIGNIAAFDMSDPEAVVSPGGVGFDINCGVRLVRTNLHENDVQPVKEQLAQALF 150
Query: 70 DNT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------V 120
D+ + S + P L + E Y WA K E+ G++ V
Sbjct: 151 DHIPVGVGSRGVIPMKPKDLDEALEMGLDWSLREGY-AWAEDKEHCEEYGRMLGADPNKV 209
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ RG Q+ T AGNHYAEIQ+VDEI++K AA KMGI+ VGQV +MIHSGSRGFG
Sbjct: 210 SKKAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNKEAADKMGIDRVGQVVIMIHSGSRGFG 268
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQVATDAL+ MEKAMKRD I ND+QLACARI+S + + + + ++
Sbjct: 269 HQVATDALLDMEKAMKRDGIRLNDKQLACARIHSPEGQNYLAAMACAANFAFVNRSTMTF 328
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
++ AF K FNTT DDLDMH+IYDVSHNIAK EEH+VDGK KTLLVHRKG+TRAFPPHHP
Sbjct: 329 LVRQAFGKIFNTTADDLDMHLIYDVSHNIAKVEEHVVDGKTKTLLVHRKGATRAFPPHHP 388
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQL GQPVLIGGTMGT SYVLTGT+KG + FG+TCHGAGRA+SR+K+RR LD++
Sbjct: 389 LIPVDYQLIGQPVLIGGTMGTNSYVLTGTQKGFDDCFGTTCHGAGRAMSRSKARRILDHK 448
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL L+++GISIRVASPKLVMEEAPESYKNVTDVV+TC GI+KK KLRP+AVIKG
Sbjct: 449 DVLAGLQAKGISIRVASPKLVMEEAPESYKNVTDVVNTCDEAGITKKAIKLRPIAVIKG 507
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 74/79 (93%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ++FDHIPVGVGS+G+IPM +DL+EALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 143 EQLAQALFDHIPVGVGSRGVIPMKPKDLDEALEMGLDWSLREGYAWAEDKEHCEEYGRML 202
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS +AKKRGLPQ+
Sbjct: 203 GADPNKVSKKAKKRGLPQL 221
>gi|302843252|ref|XP_002953168.1| hypothetical protein VOLCADRAFT_63305 [Volvox carteri f.
nagariensis]
gi|300261555|gb|EFJ45767.1| hypothetical protein VOLCADRAFT_63305 [Volvox carteri f.
nagariensis]
Length = 503
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 246/478 (51%), Positives = 294/478 (61%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M V GV +VN+ L+ L+ EEL+ + + G GGFLP VKQ
Sbjct: 28 MRVPGVVYVNNALKGLIFEELQQAVQRGDHGGFLPAVKQLANVAALPGIVKRSIALPDVH 87
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I NVAA PG VG + L + P + L+
Sbjct: 88 SGYGFAIGNVAAFDMDNPEAVVSPGGVGFDINCGVRLIRTNLTEADVAPVREQLAQALFD 147
Query: 75 SSNIWKRS----PLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ S P T E+ + + E Y WA K E+ G++ V
Sbjct: 148 HIPVGVGSQGIIPTTAKDMESALELGMDWSLREGY-AWAEDKEHCEEYGRMLNADPRHVS 206
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAE+Q+VDE+ D AA +MGI+ GQV VMIHSGSRG GH
Sbjct: 207 SRAKKRGL-PQMGTLGAGNHYAEVQVVDEVLDPVAARRMGIDTKGQVVVMIHSGSRGLGH 265
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALV ME+AM RD I TNDRQLACARI S + +++ + ++ +
Sbjct: 266 QVATDALVAMERAMARDGIVTNDRQLACARIGSAEGQSYLAAMACAANYAWVNRSSMTFL 325
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F +TPDDLDMHV+YDVSHNIAK E+H+VDGK LLVHRKGSTRAFPPHHPL
Sbjct: 326 ARQAFAKLFKSTPDDLDMHVVYDVSHNIAKVEQHLVDGKYMRLLVHRKGSTRAFPPHHPL 385
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQL GQPVL+GGTMGT SYVLTGTE+G +ETFGSTCHGAGRA SR SR LDYQ+
Sbjct: 386 IPVDYQLIGQPVLVGGTMGTASYVLTGTEQGFKETFGSTCHGAGRARSRNSSRNKLDYQQ 445
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+++GISIRVASPKLVMEEAPESYK+V VVDTCH GISKK KLRP+AVIKG
Sbjct: 446 VLDNLKAKGISIRVASPKLVMEEAPESYKDVCAVVDTCHEAGISKKAVKLRPIAVIKG 503
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ++FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 139 EQLAQALFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAWAEDKEHCEEYGRML 198
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP VS RAKKRGLPQ+
Sbjct: 199 NADPRHVSSRAKKRGLPQM 217
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ++FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY WAEDKEH E +
Sbjct: 137 VREQLAQALFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAWAEDKEHCEEYGR 196
Query: 474 SMFDHIPVGVGSK 486
M + P V S+
Sbjct: 197 -MLNADPRHVSSR 208
>gi|341891712|gb|EGT47647.1| hypothetical protein CAEBREN_25556 [Caenorhabditis brenneri]
Length = 491
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 244/471 (51%), Positives = 297/471 (63%), Gaps = 69/471 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
MNVEG F+VN +LE+LM +EL+ SC +GGFLP V+QIANVA+LPGIV
Sbjct: 30 MNVEGRFYVNKNLEQLMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIH 89
Query: 51 ---GRSVG------LPDVHSVPS-----------TQWLSDNTMRSSNIWKRSPLT----- 85
G S+G L + SV S + L N + LT
Sbjct: 90 SGYGFSIGNIAAFDLSNPESVISPGGVGFDINCGVRLLRTNLFEEDVKPVKEQLTQSLFD 149
Query: 86 ---LGAGNHYAEIQIVDEIYD--------------KWAASKMGIEDVGQVC------VMI 122
+G G+ A + ++ + WA K E+ G++ V +
Sbjct: 150 HIPVGVGSKGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASKVSM 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAE+Q+VDEIYDK AAS MGI+ GQV VM+H GSRG GHQ
Sbjct: 210 RAKKRGL-PQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLGHQ 268
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAK 240
VATD+LV+ME+AM RD I A + + N A+ + T + +AF K
Sbjct: 269 VATDSLVEMERAMARDGIMEGKDYFA--GMAAAANFAWVNRSCIT------FCVRNAFQK 320
Query: 241 QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
F +PDD+DM VIYDVSHN+AK EEHMVDG+ K L VHRKG+TRAFP HHPLIPVDYQL
Sbjct: 321 TFGMSPDDMDMQVIYDVSHNVAKMEEHMVDGRPKKLCVHRKGATRAFPAHHPLIPVDYQL 380
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPVLIGG+MGTCSYVLTGTEKGM ETFG+TCHGAGRALSRAKSRR + + V++ L+
Sbjct: 381 IGQPVLIGGSMGTCSYVLTGTEKGMVETFGTTCHGAGRALSRAKSRRTITWDSVIDDLKK 440
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ISIR+ASPKL+MEEAPESYKNVTDVVDTC A GISKK KLRP+AVIKG
Sbjct: 441 KEISIRIASPKLIMEEAPESYKNVTDVVDTCDAAGISKKAVKLRPIAVIKG 491
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+L QS+FDHIPVGVGSKG IPM A DL E LEMGMDW+LREGY W
Sbjct: 127 LRTNLFEEDVKPVKEQLTQSLFDHIPVGVGSKGAIPMLASDLVECLEMGMDWTLREGYSW 186
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML AD SKVSMRAKKRGLPQ+
Sbjct: 187 AEDKEHCEEYGRMLQADASKVSMRAKKRGLPQL 219
>gi|323449299|gb|EGB05188.1| hypothetical protein AURANDRAFT_38645 [Aureococcus anophagefferens]
Length = 509
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 241/479 (50%), Positives = 297/479 (62%), Gaps = 70/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M V GVFFVN LE L+ +ELR+ GGFLP +KQ
Sbjct: 33 MRVPGVFFVNSALESLVFDELRHHSDSSGYGGFLPAIKQLANVATLPGIVGESVGLPDIH 92
Query: 40 ------IANVAAL----------PGIVGRSV--GLPDVHSVPSTQWLSDNT--------- 72
I NVAA PG VG + G+ + + + +S+N
Sbjct: 93 SGYGFAIGNVAAFDCGDSEAVVSPGGVGFDINCGVRLLRTNLTEGDVSENKESLAQSLFD 152
Query: 73 -----MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------VM 121
+ S + S L A + + E Y WA K E+ G++ V
Sbjct: 153 HIPVGVGSRGVIPTSSAHLDAALNMGMDWSIREGY-SWAEDKDHCEEAGRMLQADPTKVS 211
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHY EIQ+VDE+YD AA++MG+ VGQV +MIHSGSRG GH
Sbjct: 212 RRAKKRGL-PQMGTLGAGNHYVEIQVVDEVYDMHAANRMGLGMVGQVAIMIHSGSRGLGH 270
Query: 180 QVATDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
QVATDAL+ ME+AM+RD + TNDRQLACARINS++ K + + ++
Sbjct: 271 QVATDALLAMERAMERDVGLRTNDRQLACARINSDEGKDYLGAMAAAANYAWVNRSSMTF 330
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQF +TPDDLDM V+YDVSHNIAKTEEH VDGK +TLLVHRKG+TRAFPP+HP
Sbjct: 331 LARQAFAKQFGSTPDDLDMQVVYDVSHNIAKTEEHFVDGKLRTLLVHRKGATRAFPPNHP 390
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
L+PVDYQ TGQPVL+GGTMGTCSY+LTGTE+GM TFGSTCHGAGRA SR K+RR L Y+
Sbjct: 391 LVPVDYQFTGQPVLVGGTMGTCSYILTGTERGMARTFGSTCHGAGRASSRNKTRRTLAYE 450
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL L+ +GISIR+ASPKLVMEEAPE+YK+V VV+TC GIS K KLRP+AVIKG
Sbjct: 451 DVLADLDKKGISIRIASPKLVMEEAPEAYKDVNSVVETCDCAGISNKALKLRPIAVIKG 509
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + E+ E LAQS+FDHIPVGVGS+G+IP ++ L+ AL MGMDWS+REGY W
Sbjct: 130 LRTNLTEGDVSENKESLAQSLFDHIPVGVGSRGVIPTSSAHLDAALNMGMDWSIREGYSW 189
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDK+HCEE GRML ADP+KVS RAKKRGLPQ+
Sbjct: 190 AEDKDHCEEAGRMLQADPTKVSRRAKKRGLPQM 222
>gi|384253307|gb|EIE26782.1| UPF0027-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 508
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/477 (50%), Positives = 295/477 (61%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
M V G+ +VN LE L+ +EL+ G GGFLP VKQ+A
Sbjct: 33 MRVPGICYVNSALEGLLFDELKAYSSSGGQGGFLPAVKQMANVAAMPGIVQRSIALPDMH 92
Query: 42 --------NVAAL----------PGIVGRSV--GLPDVHSVPSTQWLSDNTMR-SSNIWK 80
NVAA PG VG + G+ + + + ++D + ++
Sbjct: 93 SGYGFAIGNVAAFDMSDPEAVVSPGGVGFDINCGVRLIRTKLTEADVADKKEELAQALFD 152
Query: 81 RSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------VMI 122
P+ +G+ G + +D I + WA K E+ G++ V
Sbjct: 153 HIPVGVGSQGIIATNTKDLDTILEMGMDYSVREGYSWAEDKDHCEEHGRMLSADPSKVSQ 212
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T GNHYAEIQ++D+++D+ AA KMGI+ GQVC+M+HSGSRG GHQ
Sbjct: 213 RAKKRGL-PQMGTLGGGNHYAEIQVIDKVFDEVAARKMGIDQEGQVCIMLHSGSRGLGHQ 271
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVI 234
VATDAL M+KAM RD I NDRQLAC RINS + + A A F ++
Sbjct: 272 VATDALTTMDKAMSRDGIIVNDRQLACTRINSKEGQDYLAGMACAANFAWVNRSSMTFLV 331
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF K F DDLDMHV+YDVSHNIAK EEH+V+G K LLVHRKGSTRAFPPHHPLI
Sbjct: 332 RQAFQKIFKQQADDLDMHVVYDVSHNIAKVEEHLVNGVPKRLLVHRKGSTRAFPPHHPLI 391
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQ+ GQPVLIGGTMGT SYVLTGTE+GM ETFGSTCHGAGRA SR SRR LDY +V
Sbjct: 392 PVDYQMIGQPVLIGGTMGTHSYVLTGTERGMAETFGSTCHGAGRAASRNSSRRTLDYTQV 451
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ L+++GISIRVASPKLVMEEAPESYK+V+ VVDTCH GISKKT +LRP+AVIKG
Sbjct: 452 LDNLKTKGISIRVASPKLVMEEAPESYKDVSAVVDTCHEAGISKKTVRLRPIAVIKG 508
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 76/93 (81%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R A+ + E LAQ++FDHIPVGVGS+GII N +DL+ LEMGMD+S+REGY W
Sbjct: 130 IRTKLTEADVADKKEELAQALFDHIPVGVGSQGIIATNTKDLDTILEMGMDYSVREGYSW 189
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDK+HCEE+GRML+ADPSKVS RAKKRGLPQ+
Sbjct: 190 AEDKDHCEEHGRMLSADPSKVSQRAKKRGLPQM 222
>gi|323449610|gb|EGB05497.1| hypothetical protein AURANDRAFT_54616 [Aureococcus anophagefferens]
Length = 509
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/479 (50%), Positives = 303/479 (63%), Gaps = 70/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M V GVFFVN LE L+ +ELR+ GGFLP +KQ
Sbjct: 33 MRVPGVFFVNSALESLVFDELRHHSDSSGYGGFLPAIKQLANVATLPGIVGESVGLPDIH 92
Query: 40 ------IANVAAL----------PGIVGRSV--GLPDVHSVPSTQWLSDNTMR-SSNIWK 80
I NVAA PG VG + G+ + + + +S+N + +++
Sbjct: 93 SGYGFAIGNVAAFDCGDSEAVVSPGGVGFDINCGVRLLRTNLTEGDVSENKESLAQSLFD 152
Query: 81 RSPLTLGA--------GNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
P+ +G+ + A + + + E Y WA K E+ G++ V
Sbjct: 153 HIPVGVGSRGVIPTSSAHLDAALNMGMDWSIREGY-SWAEDKDHCEEAGRMLQADPTKVS 211
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHY EIQ+VDE+YD AA++MG+ VGQV +MIHSGSRG GH
Sbjct: 212 RRAKKRGL-PQMGTLGAGNHYVEIQVVDEVYDMHAANRMGLGMVGQVAIMIHSGSRGLGH 270
Query: 180 QVATDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
QVATDAL+ ME+AM+RD + TNDRQLACARINS++ K + + ++
Sbjct: 271 QVATDALLAMERAMERDVGLVTNDRQLACARINSDEGKDYLGAMAAAANYAWVNRSSMTF 330
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQF +TPDDLDM V+YDVSHNIAKTEEH VDGK +TLLVHRKG+TRAFPP+HP
Sbjct: 331 LARQAFAKQFGSTPDDLDMQVVYDVSHNIAKTEEHFVDGKLRTLLVHRKGATRAFPPNHP 390
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
L+PVDYQ TGQPVL+GGTMGTCSY+LTGTE+GM TFGSTCHGAGRA SR K+RR L Y+
Sbjct: 391 LVPVDYQFTGQPVLVGGTMGTCSYILTGTERGMARTFGSTCHGAGRASSRNKTRRTLAYE 450
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL L+ +GISIR+ASPKLVMEEAPE+YK+V VV+TC GIS K KLRP+AVIKG
Sbjct: 451 DVLADLDKKGISIRIASPKLVMEEAPEAYKDVNSVVETCDCAGISNKALKLRPIAVIKG 509
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + E+ E LAQS+FDHIPVGVGS+G+IP ++ L+ AL MGMDWS+REGY W
Sbjct: 130 LRTNLTEGDVSENKESLAQSLFDHIPVGVGSRGVIPTSSAHLDAALNMGMDWSIREGYSW 189
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDK+HCEE GRML ADP+KVS RAKKRGLPQ+
Sbjct: 190 AEDKDHCEEAGRMLQADPTKVSRRAKKRGLPQM 222
>gi|71029308|ref|XP_764297.1| hypothetical protein [Theileria parva strain Muguga]
gi|122051395|sp|Q4N1R8.1|RTCB_THEPA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|68351251|gb|EAN32014.1| hypothetical protein, conserved [Theileria parva]
Length = 507
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/477 (49%), Positives = 295/477 (61%), Gaps = 69/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
MNVEG F ND+L KL+ +EL+ G FLP +KQ+ANVAALPGIV
Sbjct: 34 MNVEGHLFANDNLSKLLFDELKQFTDDP--GSFLPALKQLANVAALPGIVKSSIALPDAH 91
Query: 51 ---GRSVG------LPDVHSVPS-----------TQWLSDNTMRS----------SNIWK 80
G S+G + + +S+ S + L N + ++
Sbjct: 92 SGYGFSIGNVAAFDMDNCNSIVSPGGVGFDINCGVRLLRTNLLYKDIEPIKEQLVQKLFD 151
Query: 81 RSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQV------CVMI 122
P+ +G G + +D I + WA K ED G++ V
Sbjct: 152 LIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTVVSY 211
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHY E+Q+V+EIYD+++A MGI+ +GQVC+M HSGSRG GHQ
Sbjct: 212 RAKKRGLS-QIGTLGAGNHYGEVQVVEEIYDEYSAKVMGIDRIGQVCIMTHSGSRGLGHQ 270
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
VA+DALV ME ++ + I+ ND+QLACARINS++ K + K + + H+
Sbjct: 271 VASDALVDMENSLNKSKIKVNDKQLACARINSDEGKKYLKGMAAASNYAWVNRSVMTHLT 330
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF + + DDLDMHV+YDVSHNIAK E+H+VDGK K LL+HRKGSTRAFPP+HPLI
Sbjct: 331 RKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHIVDGKLKRLLLHRKGSTRAFPPYHPLI 390
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
D+Q GQPVL+GGTMGTCSYVLTGT+ M T GSTCHG+GR LSR KSRR LDY EV
Sbjct: 391 SADFQHIGQPVLVGGTMGTCSYVLTGTQLAMDLTLGSTCHGSGRTLSRNKSRRILDYNEV 450
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
LN L+ +GISIRVASPKLV EEAPESYK+V++VV TCH GISKK KLRPVAVIKG
Sbjct: 451 LNNLKEKGISIRVASPKLVTEEAPESYKDVSEVVQTCHDSGISKKCVKLRPVAVIKG 507
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR ++ + + E+L Q +FD IPVGVG +G IP + DL+ LE GMDWS+ GY W
Sbjct: 129 LRTNLLYKDIEPIKEQLVQKLFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCE++GRM+ ADP+ VS RAKKRGL Q+
Sbjct: 189 AEDKEHCEDFGRMIQADPTVVSYRAKKRGLSQI 221
>gi|339265073|ref|XP_003366339.1| RtcB protein [Trichinella spiralis]
gi|316965152|gb|EFV49955.1| RtcB protein [Trichinella spiralis]
Length = 437
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/324 (65%), Positives = 241/324 (74%), Gaps = 18/324 (5%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHY E+Q+V+EIYDK AA
Sbjct: 115 WAEDKEHCEEYGRMLEADPAKVSTRAKKRGL-PQLGTLGAGNHYGEVQVVEEIYDKHAAR 173
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVAT---DALVQMEKAMKRDNIETNDRQLACARINSN 213
+MGI+ GQVCVMIH GSRG GHQVAT +ALV+M+KAM R+NI+ NDRQLACA + S
Sbjct: 174 RMGIDRKGQVCVMIHCGSRGLGHQVATGEKNALVEMDKAMLRNNIKLNDRQLACAPLKSK 233
Query: 214 ------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 267
K A A F AFAK F TPDDLDM V+YDVSHNIAK EEH
Sbjct: 234 EGQNYLKGMAAAANFAWVNRSCMTFCARQAFAKIFQCTPDDLDMQVVYDVSHNIAKIEEH 293
Query: 268 MVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQE 327
MV+GK KTL VHRKGSTRAFPPHHPLIPVDYQ TGQPVLIGGTMGTCSY+LTGT KGM E
Sbjct: 294 MVEGKLKTLCVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYILTGTVKGMSE 353
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDV 387
TFG+TCHGAGRA+SRAKSRR LDY VL+ L ++GISIRVASPKL+MEEAPESYKNVTDV
Sbjct: 354 TFGTTCHGAGRAMSRAKSRRTLDYTNVLDALAAKGISIRVASPKLIMEEAPESYKNVTDV 413
Query: 388 VDTCHAVGISKKTFKLRPVAVIKG 411
V+TCH GISK+ KLRP+AVIKG
Sbjct: 414 VNTCHEAGISKRCVKLRPIAVIKG 437
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 63/79 (79%), Gaps = 8/79 (10%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q +FD IPVGVGS RD EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 78 EQLTQCLFDFIPVGVGS--------RDFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 129
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 130 EADPAKVSTRAKKRGLPQL 148
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 9/73 (12%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L Q +FD IPVGVGS RD EE LEMGMDW+LREGY WAEDKEH E +
Sbjct: 76 VKEQLTQCLFDFIPVGVGS--------RDFEECLEMGMDWTLREGYSWAEDKEHCEEYGR 127
Query: 474 SMFDHIPVGVGSK 486
M + P V ++
Sbjct: 128 -MLEADPAKVSTR 139
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 35 PGVKQIANVAALPGIVGRSVGLPDVHS 61
P VKQI NVA+LPG+V RS+GLPD+H+
Sbjct: 1 PAVKQIGNVASLPGVVWRSIGLPDIHA 27
>gi|297260920|ref|XP_002798386.1| PREDICTED: UPF0027 protein C22orf28 homolog isoform 2 [Macaca
mulatta]
Length = 430
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 231/405 (57%), Positives = 270/405 (66%), Gaps = 46/405 (11%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAAL----------PGIV 50
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAA PG V
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAAFDMNDSEAVVSPGGV 89
Query: 51 GRSVGL-----------PDVHSVPS--TQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQI 97
G + DV V Q + D+ + + + + A + +++
Sbjct: 90 GFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHI--PVGVGSKGVIPMNAKDLEEALEM 147
Query: 98 -----VDEIYDKWAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQ 144
+ E Y WA K E+ G++ V + RG Q+ T AGNHYAEIQ
Sbjct: 148 GVDWSLREGY-AWAEDKEHCEEYGRMLQADPNKVSARAKKRGL-PQLGTLGAGNHYAEIQ 205
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQ
Sbjct: 206 VVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQ 265
Query: 205 LACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
LACARI S K A A + + AFAK FNTTPDDLD+HVIYDVS
Sbjct: 266 LACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVS 325
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVL
Sbjct: 326 HNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVL 385
Query: 319 TGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
TGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+VL+KL G+
Sbjct: 386 TGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGM 430
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 116/178 (65%), Gaps = 26/178 (14%)
Query: 396 ISKKTFKLR----PVAVIKGI-YLNERLAQSMFDHIP---VGVGSKGIIP---------- 437
ISK ++++ P ++G+ Y+N+ L + MF+ + G G G +P
Sbjct: 15 ISKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAA 74
Query: 438 MNARDLEEALE---MGMDWS-----LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGII 489
+ D E + +G D + LR ++ + E+LAQ+MFDHIPVGVGSKG+I
Sbjct: 75 FDMNDSEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVI 134
Query: 490 PMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
PMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+KVS RAKKRGLPQ+
Sbjct: 135 PMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQL 192
>gi|429329769|gb|AFZ81528.1| uncharacterized protein family UPF0027 domain-containing protein
[Babesia equi]
Length = 503
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/477 (47%), Positives = 294/477 (61%), Gaps = 72/477 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEG F N++L L+ +EL+ + G FLP +KQ+ANVAALPGIV S+ LPD H
Sbjct: 33 MQVEGHVFANENLSNLLFDELKQYSKEP--GSFLPALKQLANVAALPGIVKNSIALPDAH 90
Query: 61 S------------------------------------VPSTQWLSDNTMRSSNIWKRS-- 82
S + + LSD ++ +R
Sbjct: 91 SGYGFSIGNVAAFDMDDEQSVVSPGGVGFDINCGVRLIRTNLLLSDIEHLKEDLVQRLFD 150
Query: 83 --PLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------VMI 122
P+ +G+ G + + +D+I WA K ED G++ V
Sbjct: 151 YIPVGVGSEGKIPCKYKDLDDILQYGMDWTVSNGYSWAEDKEHCEDFGRMIQADSSKVSQ 210
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAEIQ+V+++YD+++A MGI+ QVC+MIHSGSRG GHQ
Sbjct: 211 RAKKRGLA-QIGTLGAGNHYAEIQVVEDVYDEFSARTMGIDKKNQVCIMIHSGSRGLGHQ 269
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
VA+DALV ME ++ +I+ ND QLACARINS + + K + + H+
Sbjct: 270 VASDALVDMESSL---DIKVNDSQLACARINSPEGTKYLKAMAAASNYAWVNRSVMTHLT 326
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF+ + DDLDMH++YDVSHNIAK EEH ++GK K LL+HRKGSTRAFPP HP+I
Sbjct: 327 RKAFSDVLKESADDLDMHLVYDVSHNIAKIEEHCINGKHKRLLMHRKGSTRAFPPFHPMI 386
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
D+QL GQPVL+GGTMGTCSYVLTGT++ M T GSTCHGAGR+LSR KSRR L+++EV
Sbjct: 387 SADFQLIGQPVLVGGTMGTCSYVLTGTQRAMNLTLGSTCHGAGRSLSRNKSRRILNHKEV 446
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ L+ +GISIRVASPKL+ EEAPESYK+V++VV TCH GISK KLRP+AVIKG
Sbjct: 447 LSNLQERGISIRVASPKLITEEAPESYKDVSEVVQTCHESGISKMCVKLRPIAVIKG 503
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 460 IWAEDKEHF-ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDK 518
+ D EH E L Q +FD+IPVGVGS+G IP +DL++ L+ GMDW++ GY WAEDK
Sbjct: 132 LLLSDIEHLKEDLVQRLFDYIPVGVGSEGKIPCKYKDLDDILQYGMDWTVSNGYSWAEDK 191
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EHCE++GRM+ AD SKVS RAKKRGL Q+
Sbjct: 192 EHCEDFGRMIQADSSKVSQRAKKRGLAQI 220
>gi|405963891|gb|EKC29423.1| UPF0027 protein C22orf28-like protein [Crassostrea gigas]
Length = 740
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 238/443 (53%), Positives = 278/443 (62%), Gaps = 69/443 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVK---------- 38
MNVEG+F+ N+ LEKLM +EL+ SCR GGFL PG+
Sbjct: 31 MNVEGIFYTNETLEKLMFDELKQSCRTQGYGGFLPGMKQIGNVAALPGIVGKSIGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + P + L+
Sbjct: 91 SGYGFAIGNMAAFDMSNKDAVVSPGGVGFDINCGVRLLRTNLMEKDVAPLKEQLAQCMFD 150
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A N +++ + E Y WA K E+ G++ V
Sbjct: 151 HIPVGVGSKGIIPMTAQNLEEALEMGMDWSLREGY-AWAEDKEHCEEYGRMLQADPGKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEIY+K+AA KMGIE GQVCVMIH GSRG GH
Sbjct: 210 SRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNKFAAKKMGIECKGQVCVMIHCGSRGLGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHV 233
QVATDALV MEKAMKRDNI+ NDRQLACA+I S K A A + +
Sbjct: 269 QVATDALVAMEKAMKRDNIKVNDRQLACAKIYSQEGQDYLKGMAAAANYAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F++TPDDLDM +IYDVSHNIAK EEH VDGKQKTLLVHRKGSTRAFPPHHPL
Sbjct: 329 CRQAFAKMFDSTPDDLDMFMIYDVSHNIAKVEEHFVDGKQKTLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ET+G+TCHGAGRALSRAKSRRNLDY E
Sbjct: 389 IPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGMDETYGTTCHGAGRALSRAKSRRNLDYTE 448
Query: 354 VLNKLESQGISIRVASPKLVMEE 376
VL+ LE +GISIRVASPKLVMEE
Sbjct: 449 VLSALEEKGISIRVASPKLVMEE 471
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/273 (71%), Positives = 222/273 (81%), Gaps = 6/273 (2%)
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+++EIY+K+AA +MGIE QVCVMI+ GSRG GHQ ATDALV MEKA+KRDNI NDRQ
Sbjct: 468 VMEEIYNKFAAKEMGIEFEEQVCVMINCGSRGLGHQEATDALVAMEKALKRDNINVNDRQ 527
Query: 205 LACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
LACA+I + + + K T + + AFAK F+ TP+DLDM +IYDVS
Sbjct: 528 LACAKIYPPEGQDYLKGMATAANYAWVNRSSMTFLCRQAFAKMFDRTPEDLDMFMIYDVS 587
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HNIAK EEH DGKQKTLLVHRKGSTRAFPPHHP IPVDYQLTGQPVLIGGTMGTCSYVL
Sbjct: 588 HNIAKVEEHFEDGKQKTLLVHRKGSTRAFPPHHPHIPVDYQLTGQPVLIGGTMGTCSYVL 647
Query: 319 TGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAP 378
TGT++GM ET+G+TCHGAGRALSRAKSRRNLDY EVL+ LE +GI IRVASPKLV+EEAP
Sbjct: 648 TGTQQGMDETYGTTCHGAGRALSRAKSRRNLDYTEVLSALEEKGIRIRVASPKLVIEEAP 707
Query: 379 ESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
ESYKNVTDVVDTCH GIS+K KLRP+AVIKG
Sbjct: 708 ESYKNVTDVVDTCHMAGISRKAIKLRPIAVIKG 740
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 73/79 (92%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ MFDHIPVGVGSKGIIPM A++LEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 142 EQLAQCMFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP KVS RAKKRGLPQ+
Sbjct: 202 QADPGKVSSRAKKRGLPQL 220
>gi|194387596|dbj|BAG60162.1| unnamed protein product [Homo sapiens]
Length = 430
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 270/405 (66%), Gaps = 46/405 (11%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAAL----------PGIV 50
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAA PG V
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAAFDMNDPEAVVSPGGV 89
Query: 51 GRSVGL-----------PDVHSVPS--TQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQI 97
G + DV V Q + D+ + + + + A + +++
Sbjct: 90 GFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHI--PVGVGSKGVIPMNAKDLEEALEM 147
Query: 98 -----VDEIYDKWAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQ 144
+ E Y WA K E+ G++ V + RG Q+ T AGNHYAEI+
Sbjct: 148 GVDWSLREGY-AWAEDKEHCEEYGRMLQADPNKVSARAKKRGL-PQLGTLGAGNHYAEIR 205
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQ
Sbjct: 206 VVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQ 265
Query: 205 LACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
LACARI S K A A + + AFAK FNTTPDDLD+HVIYDVS
Sbjct: 266 LACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVS 325
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVL
Sbjct: 326 HNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVL 385
Query: 319 TGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
TGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+VL+KL G+
Sbjct: 386 TGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGM 430
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 114 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 173
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 174 QADPNKVSARAKKRGLPQL 192
>gi|328866838|gb|EGG15221.1| UPF0027 family protein [Dictyostelium fasciculatum]
Length = 504
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/478 (48%), Positives = 292/478 (61%), Gaps = 71/478 (14%)
Query: 3 VEGVFFVNDHLEKLMLEELRNSCRPGM--VGGFL------------PGVK---------- 38
V+G+ +VND ++ L+ EEL + G GGFL PG+
Sbjct: 29 VDGMIYVNDSIKSLVFEELEQYSKQGAGGSGGFLPAVKQIANVASLPGIVGHSLGMPDIH 88
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPSTQWLSDNT 72
I NVAA PG VG + D+ + S
Sbjct: 89 SGYGFSIGNVAAFDVDDPRSVVSPGGVGFDINCGVRLLRTNLMEKDIDPIKEQLCQSLFD 148
Query: 73 MRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + +G+ A +++ + E Y W K E+ G++ V
Sbjct: 149 HIPVGVGSKGVIPMGSKALDAALELGLDWSLREGY-AWVEDKEHCEEYGRMLNADPSKVS 207
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHY E+Q+VDEIYDK AA KMG++ +GQVCVMIHSGSRG GH
Sbjct: 208 ERAKKRGL-PQLGTLGAGNHYLEVQVVDEIYDKGAAKKMGVDRLGQVCVMIHSGSRGLGH 266
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATD+L MEKAM RD I ND+QLACA I+S + K + + ++ +
Sbjct: 267 QVATDSLTSMEKAMARDKIHLNDKQLACAHISSQEGKDYLAGMAAAANFAWVNRQSMTFL 326
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
FAK FN +PDDLDMHVIYDVSHNIAK EEHMVDG+ K LLVHRKG+TRAF PHHPL
Sbjct: 327 ARQTFAKAFNASPDDLDMHVIYDVSHNIAKFEEHMVDGRPKKLLVHRKGATRAFGPHHPL 386
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ TGQPVLIGGTMGT SYVLTGTE GM+ETFGSTCHGAGR+ SR KSR NL YQ+
Sbjct: 387 IPVDYQFTGQPVLIGGTMGTHSYVLTGTETGMRETFGSTCHGAGRSCSRNKSRNNLSYQD 446
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+++GISIR+ASPKL+MEEAPESYK+V V++TCH GIS+K+F+LRP+ VIKG
Sbjct: 447 VLDSLKNKGISIRIASPKLIMEEAPESYKDVDQVIETCHTAGISQKSFRLRPIGVIKG 504
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDHIPVGVGSKG+IPM ++ L+ ALE+G+DWSLREGY W EDKEHCEEYGRML
Sbjct: 140 EQLCQSLFDHIPVGVGSKGVIPMGSKALDAALELGLDWSLREGYAWVEDKEHCEEYGRML 199
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS RAKKRGLPQ+
Sbjct: 200 NADPSKVSERAKKRGLPQL 218
>gi|167045800|gb|ABZ10469.1| hypothetical protein [Callithrix jacchus]
Length = 260
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/260 (76%), Positives = 216/260 (83%), Gaps = 6/260 (2%)
Query: 158 MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSN---- 213
MGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S
Sbjct: 1 MGIDRKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQD 60
Query: 214 --KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
K A A + + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDG
Sbjct: 61 YLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDG 120
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+
Sbjct: 121 KERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGT 180
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TC
Sbjct: 181 TCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTC 240
Query: 392 HAVGISKKTFKLRPVAVIKG 411
H GISKK KLRP+AVIKG
Sbjct: 241 HDAGISKKAIKLRPIAVIKG 260
>gi|401396351|ref|XP_003879800.1| upf0027 protein PH1602, related [Neospora caninum Liverpool]
gi|325114208|emb|CBZ49765.1| upf0027 protein PH1602, related [Neospora caninum Liverpool]
Length = 519
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 238/483 (49%), Positives = 298/483 (61%), Gaps = 74/483 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELR-----NSCRPGMVGGFLPGVKQ---------------- 39
M VEG ++ND L L+ +ELR N R GGFLP +KQ
Sbjct: 39 MEVEGHVYINDALRSLLFDELRQFAAQNGGRGSPTGGFLPALKQVANVAALPGIVGKSIG 98
Query: 40 -----------IANVAAL----------PGIVGRSV--GLPDVHSVPSTQWLSDNT-MRS 75
I NVAA PG VG + G+ + + + ++D + +
Sbjct: 99 LPDIHAGYGFAIGNVAAFDMGDPQAVVSPGGVGFDINCGVRLLRTNLQEEDVADKKELLA 158
Query: 76 SNIWKRSPLTLGAGN----HYAEIQIVDEI---------YDKWAASKMGIEDVGQVC--- 119
++ P+ +G+ E++ E+ Y WA K E+ G++
Sbjct: 159 QALFDHIPVGVGSQGIIPCKGPELEAALELGIDWSLREGY-AWAEDKEHCEEFGRMLHAN 217
Query: 120 ---VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 174
V + RG Q+ T AGNHYAEIQ+VDEIYD++AA +MGIE QVCVMIHSGS
Sbjct: 218 PTKVSARAKKRGL-PQMGTLGAGNHYAEIQVVDEIYDEYAARRMGIEREKQVCVMIHSGS 276
Query: 175 RGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH-- 232
RG GHQVATDALV ME AM + I+TNDRQLACARI+S + + + + ++
Sbjct: 277 RGLGHQVATDALVAMEAAMTKHKIKTNDRQLACARIDSPEGQDYLGAMAAAANYAWVNRS 336
Query: 233 ----VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP 288
+ +AFAK TPDDLDMH++YDVSHNIAK EEH V+G K LLVHRKGSTRAFP
Sbjct: 337 SIAFLAREAFAKVMKQTPDDLDMHMVYDVSHNIAKIEEHFVNGSPKRLLVHRKGSTRAFP 396
Query: 289 PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRN 348
PHHPL+ D+Q+TGQPVLIGGTMGTCSYVLTGTE+GM ET+GSTCHGAGRA SR +R N
Sbjct: 397 PHHPLLASDFQMTGQPVLIGGTMGTCSYVLTGTEQGMAETWGSTCHGAGRAKSRNNARNN 456
Query: 349 LDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAV 408
L Y +V+ LE+QGI+IRVASPKL+MEEAPESYK+V++VV TCH GISKK KLRP+AV
Sbjct: 457 LQYPDVIRALEAQGIAIRVASPKLIMEEAPESYKDVSEVVQTCHDAGISKKCVKLRPLAV 516
Query: 409 IKG 411
IKG
Sbjct: 517 IKG 519
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LAQ++FDHIPVGVGS+GIIP +LE ALE+G+DWSLREGY WAEDKEHCEE+GRML
Sbjct: 155 ELLAQALFDHIPVGVGSQGIIPCKGPELEAALELGIDWSLREGYAWAEDKEHCEEFGRML 214
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A+P+KVS RAKKRGLPQ+
Sbjct: 215 HANPTKVSARAKKRGLPQM 233
>gi|170072215|ref|XP_001870125.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|327488452|sp|B0XKF3.1|RTCB2_CULQU RecName: Full=tRNA-splicing ligase RtcB homolog 2
gi|167868461|gb|EDS31844.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 502
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/420 (54%), Positives = 275/420 (65%), Gaps = 71/420 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LEKLM +ELRNSCRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSRLEKLMFDELRNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMSDPTSIVSPGGVGFDINC-GVRLLRTNLFEKDVKPVQEQLAQSLF 149
Query: 80 KRSPLTLGA------GNHYAEIQI-------VDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ H E + + E Y WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLTADPSKV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 209 SMRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + + ++
Sbjct: 268 HQVATDALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSAAANFAWVNRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLVHRKGSTRAFPPHHP
Sbjct: 328 LTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLVHRKGSTRAFPPHHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQLTGQPVL+GG+MGTCS+VLTGTEKGM ETFGSTCHGAGR+LSRAKSRRNLDY+
Sbjct: 388 LIPVDYQLTGQPVLVGGSMGTCSFVLTGTEKGMAETFGSTCHGAGRSLSRAKSRRNLDYR 447
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 81/93 (87%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+W
Sbjct: 128 LRTNLFEKDVKPVQEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML ADPSKVSMRAKKRGLPQ+
Sbjct: 188 AEDKEHCEEYGRMLTADPSKVSMRAKKRGLPQL 220
>gi|237840523|ref|XP_002369559.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|95007265|emb|CAJ20485.1| hypothetical protein, conserved [Toxoplasma gondii RH]
gi|211967223|gb|EEB02419.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|221482771|gb|EEE21102.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221503434|gb|EEE29132.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 519
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 238/486 (48%), Positives = 296/486 (60%), Gaps = 80/486 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRN-----SCRPGMVGGFLPGVKQ---------------- 39
M VEG +VND L L+ +ELR R GGFLP +KQ
Sbjct: 39 MQVEGHIYVNDALRSLLFDELRQYTAQGGGRGAPTGGFLPALKQVANVAALPGIVGKSIG 98
Query: 40 -----------IANVAAL----------PGIVGRSV--GLPDVHSVPSTQWLSDNTMR-S 75
I NVAA PG VG + G+ + + + ++D + +
Sbjct: 99 LPDIHAGYGFAIGNVAAFDMEDPQAVVSPGGVGFDINCGVRLLRTNLQEEDVADKKEQLA 158
Query: 76 SNIWKRSPLTLGAGN----HYAEIQIVDEI---------YDKWAASKMGIEDVGQVCVMI 122
++ P+ +G+ E++ E+ Y WA K E+ G+ M+
Sbjct: 159 QALFDHIPVGVGSQGIIPCKGPELEAALELGIDWSLREGY-AWAEDKEHCEEFGR---ML 214
Query: 123 HSGS---------RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIH 171
H+ + RG Q+ T AGNHYAEIQ+V+EIYD +AA +MG+E QVCVMIH
Sbjct: 215 HANATKVSARAKKRGL-PQMGTLGAGNHYAEIQVVEEIYDAYAARRMGLEREKQVCVMIH 273
Query: 172 SGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTT 225
SGSRG GHQVATDALV ME AM RD ++TNDRQLACAR+ S + + + A +
Sbjct: 274 SGSRGLGHQVATDALVAMEAAMSRDKVKTNDRQLACARVGSPEGQDYLGAMCAAANYAWV 333
Query: 226 PDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTR 285
+ +AFAK +PDDLDMHV+YDVSHNIAK EEH V G + LLVHRKGSTR
Sbjct: 334 NRSSIAFLAREAFAKVMKQSPDDLDMHVVYDVSHNIAKIEEHFVRGAPRRLLVHRKGSTR 393
Query: 286 AFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKS 345
AFPPHHPL+ D+Q+TGQPVLIGGTMGTCSYVLTGTEKGMQET+GSTCHGAGRA SR +
Sbjct: 394 AFPPHHPLLASDFQMTGQPVLIGGTMGTCSYVLTGTEKGMQETWGSTCHGAGRAKSRNNA 453
Query: 346 RRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRP 405
R NL YQ+V+ LE +GIS+RVASPKL+MEEAPESYK+V+ VV TCH GIS+K KLRP
Sbjct: 454 RNNLQYQDVIRALEDRGISMRVASPKLIMEEAPESYKDVSQVVQTCHDAGISRKCVKLRP 513
Query: 406 VAVIKG 411
+AVIKG
Sbjct: 514 IAVIKG 519
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ++FDHIPVGVGS+GIIP +LE ALE+G+DWSLREGY WAEDKEHCEE+GRML
Sbjct: 155 EQLAQALFDHIPVGVGSQGIIPCKGPELEAALELGIDWSLREGYAWAEDKEHCEEFGRML 214
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A+ +KVS RAKKRGLPQ+
Sbjct: 215 HANATKVSARAKKRGLPQM 233
>gi|124803520|ref|XP_001347744.1| conserved protein [Plasmodium falciparum 3D7]
gi|74863421|sp|Q8IIU6.1|RTCB_PLAF7 RecName: Full=tRNA-splicing ligase RtcB homolog
gi|23495994|gb|AAN35657.1| conserved protein [Plasmodium falciparum 3D7]
Length = 506
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 236/479 (49%), Positives = 284/479 (59%), Gaps = 72/479 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNVEG +VN+ L+ L+ EE+ + FLP V QIA
Sbjct: 32 MNVEGHIYVNEKLKTLLDEEIA-TYELNKNSTFLPAVMQIANVSTLPGIVKASIALPDVH 90
Query: 42 --------NVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNI----W 79
NVAA PG VG + V + + + D + + +
Sbjct: 91 AGYGFSIGNVAAFDMDNEKAIVSPGGVGFDINC-GVRLIRTNLFYEDIKPKQEELTQLLF 149
Query: 80 KRSPLTLGAGNHYAEIQ-------------IVDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ Q V E Y W K+ ED G+ V
Sbjct: 150 NHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYS-WIEDKLNCEDNGRSLYADSNFV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
I + RG Q+ T AGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 209 SIRAKKRGIT-QMGTLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQ+ATDAL+ MEK+M + I D+QLAC I+S + + + K + + ++
Sbjct: 268 HQIATDALIDMEKSMNKYKINVIDKQLACTPIHSKEGQNYLKAMGSACNFAWINRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AF+K FN +PDDLDMHVIYDVSHNIAK EEH +DGK K LLVHRKGSTRAFPP HP
Sbjct: 328 LARQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHYIDGKIKKLLVHRKGSTRAFPPFHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
L+P+DYQ GQP+LIGGTMGT SYVLTG EK MQ TFGSTCHGAGRALSR KSR L Y
Sbjct: 388 LVPLDYQYCGQPILIGGTMGTYSYVLTGNEKAMQATFGSTCHGAGRALSRNKSRNTLSYL 447
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VLNKL+ Q ISIRVASPKL+MEEAPESYKNV DVV TCH GIS K F+L+PVAVIKG
Sbjct: 448 DVLNKLKEQNISIRVASPKLIMEEAPESYKNVCDVVQTCHDAGISNKCFRLKPVAVIKG 506
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W
Sbjct: 128 IRTNLFYEDIKPKQEELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L AD + VS+RAKKRG+ Q+
Sbjct: 188 IEDKLNCEDNGRSLYADSNFVSIRAKKRGITQM 220
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK + E +S+
Sbjct: 142 EELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSL 201
Query: 476 F---DHIPVGVGSKGIIPM 491
+ + + + +GI M
Sbjct: 202 YADSNFVSIRAKKRGITQM 220
>gi|84997167|ref|XP_953305.1| hypothetical protein [Theileria annulata strain Ankara]
gi|74950546|sp|Q4U923.1|RTCB_THEAN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|65304301|emb|CAI76680.1| hypothetical protein, conserved [Theileria annulata]
Length = 515
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 232/485 (47%), Positives = 292/485 (60%), Gaps = 77/485 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVA----------ALPGI- 49
MNVEG F ND+L KL+ +EL+ G FLP +KQ+ANVA ALP
Sbjct: 34 MNVEGHLFANDNLSKLLFDELKQFTDDP--GSFLPALKQLANVAALPGIVKSSIALPDAH 91
Query: 50 --VGRSVG------LPDVHSVPS-----------TQWLSDNTMRS----------SNIWK 80
G S+G + + +S+ S + L N + ++
Sbjct: 92 SGYGFSIGNVAAFDMDNCNSIVSPGGVGFDINCGVRLLRTNLLYKDIEPIKEQLVQKLFD 151
Query: 81 RSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQV------CVMI 122
P+ +G G + +D I + WA K ED G++ V
Sbjct: 152 LIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTVVSY 211
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQI--------VDEIYDKWAASKMGIEDVGQVCVMIHS 172
+ RG Q+ T AGNHY E+Q+ V+EIYD+++A MGI+ +GQVC+M HS
Sbjct: 212 RAKKRGLS-QIGTLGAGNHYGEVQVSIYSNIYVVEEIYDEYSAKVMGIDRIGQVCIMTHS 270
Query: 173 GSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD----- 227
GSRG GHQVA+DALV ME ++ + I+ ND+QLACARINS++ K + K +
Sbjct: 271 GSRGLGHQVASDALVDMENSLNKSKIKVNDKQLACARINSDEGKKYLKGMAAASNYAWVN 330
Query: 228 -DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRA 286
+ H+ AF + + DDLDMHV+YDVSHNIAK E+HMVDGK K LL+HRKGSTRA
Sbjct: 331 RSVMTHLTRKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHMVDGKLKRLLLHRKGSTRA 390
Query: 287 FPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSR 346
FPP+HPLI D+Q GQPVL+GGTMGTCSYVLTGT+ M T GSTCHG+GR LSR KSR
Sbjct: 391 FPPYHPLISADFQHIGQPVLVGGTMGTCSYVLTGTQLAMDLTLGSTCHGSGRTLSRNKSR 450
Query: 347 RNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPV 406
R LDY EVLN L+ +GISIRVASPKLV EEAPESYK+V++VV TCH GISKK KLRPV
Sbjct: 451 RVLDYNEVLNNLKEKGISIRVASPKLVTEEAPESYKDVSEVVQTCHDSGISKKCVKLRPV 510
Query: 407 AVIKG 411
AVIKG
Sbjct: 511 AVIKG 515
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR ++ + + E+L Q +FD IPVGVG +G IP + DL+ LE GMDWS+ GY W
Sbjct: 129 LRTNLLYKDIEPIKEQLVQKLFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCE++GRM+ ADP+ VS RAKKRGL Q+
Sbjct: 189 AEDKEHCEDFGRMIQADPTVVSYRAKKRGLSQI 221
>gi|156098308|ref|XP_001615186.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148804060|gb|EDL45459.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 511
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 230/477 (48%), Positives = 295/477 (61%), Gaps = 68/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEEL------RNSC-RPGMVG----GFLPGVKQ---------- 39
MNVEG +VND L+ L+ +E+ RNS P +V LPG+++
Sbjct: 37 MNVEGHMYVNDKLKHLIDDEIETYQVNRNSTFLPAVVQIANVSTLPGIEKASIALPDVHA 96
Query: 40 -----IANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR--S 82
I NVAA PG VG + V + + + D + + + +
Sbjct: 97 GYGFSIGNVAAFDMSNEKAIISPGGVGFDINC-GVRLIRTNLFYDDVKDKQEELTQLLFN 155
Query: 83 PLTLGAGNHYAEIQIVDEIYDK--------------WAASKMGIEDVGQVC------VMI 122
+ +G G+ + D++ + W K+ ED G+ V +
Sbjct: 156 NIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSLYADSNHVSV 215
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAEIQIVDEIYD+ +A MGIE QVCVMIHSGSRG GHQ
Sbjct: 216 RAKKRGIT-QMGTLGAGNHYAEIQIVDEIYDRRSAKLMGIEKKNQVCVMIHSGSRGLGHQ 274
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------VI 234
+ATDAL++MEK+M + + D+QLAC I+S + K + K + + ++ +
Sbjct: 275 IATDALIEMEKSMAKYKLNVIDKQLACTPIHSTEGKNYLKAMGSACNFAWINRSSMTFLA 334
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
FAK FN +PDDLDMHVIYDVSHNIAK E+H+VDGK+K LLVHRKGSTRAFPP HP +
Sbjct: 335 RQTFAKIFNQSPDDLDMHVIYDVSHNIAKIEDHLVDGKRKKLLVHRKGSTRAFPPFHPAV 394
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P+DYQ GQP+LIGGTMGT SYVLTGT+K M+ TFGSTCHGAGRALSR KSR L+Y +V
Sbjct: 395 PLDYQYCGQPILIGGTMGTYSYVLTGTDKAMETTFGSTCHGAGRALSRNKSRNTLNYVDV 454
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L KL+ + ISIRVASPKL+MEEAPESYKNV++VV+TCH GIS K F+L+PVAVIKG
Sbjct: 455 LQKLKEENISIRVASPKLIMEEAPESYKNVSEVVNTCHDAGISAKCFRLKPVAVIKG 511
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ E L Q +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W
Sbjct: 133 IRTNLFYDDVKDKQEELTQLLFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAW 192
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L AD + VS+RAKKRG+ Q+
Sbjct: 193 VEDKLNCEDNGRSLYADSNHVSVRAKKRGITQM 225
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E L Q +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK + E +S+
Sbjct: 147 EELTQLLFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSL 206
Query: 476 F---DHIPVGVGSKGIIPM 491
+ +H+ V +GI M
Sbjct: 207 YADSNHVSVRAKKRGITQM 225
>gi|68067927|ref|XP_675888.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|74989492|sp|Q4YUZ9.1|RTCB_PLABA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|56495322|emb|CAH98157.1| conserved hypothetical protein [Plasmodium berghei]
Length = 505
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 287/477 (60%), Gaps = 69/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELR----NSCR---------------PGMVGG--FLPGVK- 38
MNVEG +VN+ L+ L+ EE++ N C PG+V LP V
Sbjct: 32 MNVEGNIYVNEKLKLLIDEEIKMYQLNKCSTFLPAVIQIANVSTLPGIVKASIALPXVHA 91
Query: 39 ----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNI----WK 80
I NVAA PG VG + V + + + +D + + +
Sbjct: 92 GYGFSIGNVAAFDMNNEKAVISPGGVGFDINC-GVRLIRTNLFYNDIKDKQEELAQLLFN 150
Query: 81 RSPLTLGAGNHYAEIQ-------------IVDEIYDKWAASKMGIEDVGQVC------VM 121
P+ +G+ Q V E Y W K+ ED G+ V
Sbjct: 151 HIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYS-WIEDKLNCEDNGRSLYANSDYVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQIVDEIY+K +A MGIE QVC+MIHSGSRG GH
Sbjct: 210 VRAKKRGIT-QMGTLGAGNHYAEIQIVDEIYNKKSAKLMGIEKKNQVCIMIHSGSRGLGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD-----DLDMHVI 234
Q+ATDAL++MEK M + I D+QLAC I+S + + + K + M +
Sbjct: 269 QIATDALIEMEKIMSKYKINVIDKQLACTPIHSPEGQNYLKAMGAACNFAWINRSSMTFL 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLVHRKGSTRAFPP HPL+
Sbjct: 329 AQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLVHRKGSTRAFPPFHPLV 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P+DYQ GQP+LIGGTMGT SYVLTGTEK M+ TFGSTCHGAGRALSR KSR L Y +V
Sbjct: 389 PLDYQYCGQPILIGGTMGTYSYVLTGTEKAMENTFGSTCHGAGRALSRNKSRNALSYSDV 448
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ L+ + ISIRVASPKL+MEEAPESYKNV++VV TCH GIS K F+LRPVAVIKG
Sbjct: 449 LSNLKEKNISIRVASPKLIMEEAPESYKNVSEVVQTCHDSGISNKCFRLRPVAVIKG 505
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W
Sbjct: 128 IRTNLFYNDIKDKQEELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L A+ VS+RAKKRG+ Q+
Sbjct: 188 IEDKLNCEDNGRSLYANSDYVSVRAKKRGITQM 220
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK + E +S+
Sbjct: 142 EELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSL 201
Query: 476 F---DHIPVGVGSKGIIPM 491
+ D++ V +GI M
Sbjct: 202 YANSDYVSVRAKKRGITQM 220
>gi|221055838|ref|XP_002259057.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
gi|327488443|sp|B3L4K9.1|RTCB_PLAKH RecName: Full=tRNA-splicing ligase RtcB homolog
gi|193809128|emb|CAQ39830.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
Length = 511
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 229/477 (48%), Positives = 293/477 (61%), Gaps = 68/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEEL------RNSC-------------RPGMVGG--FLPGVK- 38
MNVEG +VND L+ L+ +E+ RNS PG+V LP V
Sbjct: 37 MNVEGHMYVNDKLKHLIDDEIEMYQLNRNSTFLPAVVQIANVSTLPGIVKASIALPDVHA 96
Query: 39 ----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR--S 82
I NVAA PG VG + V + + + D + + + +
Sbjct: 97 GYGFSIGNVAAFDMSNEKAIISPGGVGFDINC-GVRLIRTNLFYEDIKDKQDELAQLLFN 155
Query: 83 PLTLGAGNHYAEIQIVDEIYDK--------------WAASKMGIEDVGQVC------VMI 122
+ +G G+ + D++ + W K+ ED G+ V +
Sbjct: 156 NIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSFYADSNYVSV 215
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG GHQ
Sbjct: 216 RAKKRGIT-QMGTLGAGNHYAEIQIVDEIYDKRSAKLMGIEKKNQVCIMIHSGSRGLGHQ 274
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------VI 234
+ATDAL++MEK+M + I+ D+QLAC I+S + + + K + + ++ +
Sbjct: 275 IATDALIEMEKSMTKYKIDVIDKQLACTPIHSKEGQNYLKAMGSACNFAWINRSSMTFLA 334
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
FAK FN +PDDLDMHVIYD+SHNIAK E+H+VDGK K LLVHRKGSTRAFPP HP +
Sbjct: 335 RQTFAKIFNQSPDDLDMHVIYDISHNIAKMEDHLVDGKMKKLLVHRKGSTRAFPPFHPAV 394
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P+DYQ GQP+LIGGTMGT SYVLTGT+K M+ TFGSTCHGAGRALSR KSR L+Y +V
Sbjct: 395 PLDYQYCGQPILIGGTMGTYSYVLTGTDKAMETTFGSTCHGAGRALSRNKSRNTLNYMDV 454
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L K++ + ISIRVASPKL+MEEAPESYKNV++VV+TCH GIS K F+L+PVAVIKG
Sbjct: 455 LQKMKEENISIRVASPKLIMEEAPESYKNVSEVVNTCHEAGISNKCFRLKPVAVIKG 511
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 65/93 (69%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ + LAQ +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W
Sbjct: 133 IRTNLFYEDIKDKQDELAQLLFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAW 192
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR AD + VS+RAKKRG+ Q+
Sbjct: 193 VEDKLNCEDNGRSFYADSNYVSVRAKKRGITQM 225
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
+ LAQ +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK + E +S
Sbjct: 147 DELAQLLFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSF 206
Query: 476 F---DHIPVGVGSKGIIPM 491
+ +++ V +GI M
Sbjct: 207 YADSNYVSVRAKKRGITQM 225
>gi|82539131|ref|XP_723978.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|74880976|sp|Q7RI54.1|RTCB_PLAYO RecName: Full=tRNA-splicing ligase RtcB homolog
gi|23478461|gb|EAA15543.1| Uncharacterized protein family UPF0027 [Plasmodium yoelii yoelii]
Length = 507
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 233/478 (48%), Positives = 286/478 (59%), Gaps = 70/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRN-------------------SCRPGMVGG--FLPGVK- 38
MNVEG +VN+ L+ L+ EE++ S PG+V LP V
Sbjct: 33 MNVEGNMYVNEKLKLLIDEEIKMYQLNKSSTFLPAVIQIANVSTLPGIVKASIALPDVHA 92
Query: 39 ----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNI----WK 80
I NVAA PG VG + V + + + +D + + +
Sbjct: 93 GYGFSIGNVAAFDMNNEKAVISPGGVGFDINC-GVRLIRTNLFYNDIKDKQEELAQLLFN 151
Query: 81 RSPLTLGAGNHYAEIQ-------------IVDEIYDKWAASKMGIEDVGQVC------VM 121
P+ +G+ Q V E Y W K+ ED G+ V
Sbjct: 152 HIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYS-WIEDKLNCEDNGRSLYANSDYVS 210
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG GH
Sbjct: 211 VRAKKRGIT-QMGTLGAGNHYAEIQIVDEIYDKKSAKLMGIEKKNQVCIMIHSGSRGLGH 269
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHV 233
Q+ATDAL++MEK M + I D+QLAC I+S + + + K F +
Sbjct: 270 QIATDALIEMEKVMSKYKINVIDKQLACTPIHSPEGQNYLKAMGAACNFAWINRSSMTFL 329
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLVHRKGSTRAFPP HPL
Sbjct: 330 ARQAFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLVHRKGSTRAFPPFHPL 389
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P+DYQ GQP+LIGGTMGT SYVLTGTEK M+ TFGSTCHGAGRALSR KSR +L Y +
Sbjct: 390 VPLDYQYCGQPILIGGTMGTYSYVLTGTEKAMENTFGSTCHGAGRALSRNKSRNSLSYSD 449
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+ + ISIRVASPKL+MEEAPESYKNV++VV TCH GIS K F+LRPVAVIKG
Sbjct: 450 VLSNLKEKNISIRVASPKLIMEEAPESYKNVSEVVQTCHDSGISNKAFRLRPVAVIKG 507
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W
Sbjct: 129 IRTNLFYNDIKDKQEELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L A+ VS+RAKKRG+ Q+
Sbjct: 189 IEDKLNCEDNGRSLYANSDYVSVRAKKRGITQM 221
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK + E +S+
Sbjct: 143 EELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSL 202
Query: 476 F---DHIPVGVGSKGIIPM 491
+ D++ V +GI M
Sbjct: 203 YANSDYVSVRAKKRGITQM 221
>gi|224013432|ref|XP_002296380.1| hypothetical protein THAPSDRAFT_41953 [Thalassiosira pseudonana
CCMP1335]
gi|327488444|sp|B8LBM8.1|RTCB_THAPS RecName: Full=tRNA-splicing ligase RtcB homolog
gi|220968732|gb|EED87076.1| hypothetical protein THAPSDRAFT_41953 [Thalassiosira pseudonana
CCMP1335]
Length = 480
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/481 (46%), Positives = 294/481 (61%), Gaps = 71/481 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSC---RPGMVGGFLPGVKQIANVA----------ALP 47
M V FVN+ L+ L+++EL ++C R F+P ++Q ANVA A+P
Sbjct: 1 MKVPAEIFVNNDLQTLLVQELHDTCCGSREEADSAFIPALRQAANVAALPGIVKASLAMP 60
Query: 48 GI---VGRSVG------LPDVHSVPS-------------------TQWLSDNTMR---SS 76
+ G +G + D +V S T+ + ++R +
Sbjct: 61 DVHSGYGFCIGNVAAFDMDDPQAVISPGGVGFDINCGVRLIRTNLTEKDVEGSVREELAE 120
Query: 77 NIWKRSPLTLG-AGNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQV------ 118
+++ P+ +G +G I +D++ W K E+ G +
Sbjct: 121 ALFRNIPVGVGVSGGIPCSIDDLDQLLRNGVDWAIEKGYAWEEDKDHCEENGCMETADPN 180
Query: 119 CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 176
CV + RG Q+ T AGNHY EIQ+VDE+Y+ AA MGI VGQVC+MIH+GSRG
Sbjct: 181 CVSKRAKKRGL-KQLGTLGAGNHYTEIQVVDEVYNTEAAKIMGIGTVGQVCIMIHTGSRG 239
Query: 177 FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLD 230
GHQVATDAL ME+AM RD I+ NDRQL+CARI+S + + + + +
Sbjct: 240 LGHQVATDALQVMEEAMCRDAIDLNDRQLSCARISSKEGREYLAAMSAAANFAWVNRSCI 299
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
++ AF++ F DD+DMH++YDV HNIAK E+H+VDG+QKTLLVHRKGSTRA+PP
Sbjct: 300 TYLARKAFSEVFQRESDDMDMHLVYDVCHNIAKVEQHIVDGEQKTLLVHRKGSTRAYPPC 359
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
HP IP DYQ GQPVLIGGTMGTCSYVL GT+KGM ETFGSTCHGAGRALSR +SR LD
Sbjct: 360 HPDIPKDYQTIGQPVLIGGTMGTCSYVLVGTDKGMAETFGSTCHGAGRALSRNQSRIKLD 419
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +VLNKL+ GI+IRVASPKLV EEAPESYKNV DV++TC GIS+K KLRP+AVIK
Sbjct: 420 HNQVLNKLKEDGIAIRVASPKLVTEEAPESYKNVCDVIETCQVAGISEKVVKLRPIAVIK 479
Query: 411 G 411
G
Sbjct: 480 G 480
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 58/79 (73%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA+++F +IPVGVG G IP + DL++ L G+DW++ +GY W EDK+HCEE G M
Sbjct: 116 EELAEALFRNIPVGVGVSGGIPCSIDDLDQLLRNGVDWAIEKGYAWEEDKDHCEENGCME 175
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+ VS RAKKRGL Q+
Sbjct: 176 TADPNCVSKRAKKRGLKQL 194
>gi|389583607|dbj|GAB66341.1| hypothetical protein PCYB_091270, partial [Plasmodium cynomolgi
strain B]
Length = 511
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/321 (60%), Positives = 238/321 (74%), Gaps = 15/321 (4%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
W K+ ED G+ V + + RG Q+ T AGNHYAEIQIVDEIYDK +A
Sbjct: 192 WVEDKLNCEDNGRSLYADSNYVSVRAKKRGIT-QMGTLGAGNHYAEIQIVDEIYDKRSAK 250
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
MG+E QVC+MIHSGSRG GHQ+ATDAL++MEK+M + ++ D+QLAC I+S + +
Sbjct: 251 LMGVEKTSQVCIMIHSGSRGLGHQIATDALIEMEKSMTKYKLDVIDKQLACTPIHSKEGE 310
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + + ++ + FAK FN +PDDLDMHVIYDVSHNIAK E+H+VD
Sbjct: 311 NYLKAMGSACNFAWINRSSMTFLARQTFAKIFNQSPDDLDMHVIYDVSHNIAKIEDHLVD 370
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK+K LLVHRKGSTRAFPP HP +P+DYQ GQP+LIGGTMGT SYVLTGT+K M TFG
Sbjct: 371 GKRKKLLVHRKGSTRAFPPFHPAVPLDYQYCGQPILIGGTMGTYSYVLTGTDKAMDTTFG 430
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
STCHGAGRALSR KSR L+Y +VL K++ + ISIRVASPKL+MEEAPESYKNV++VV+T
Sbjct: 431 STCHGAGRALSRNKSRNTLNYVDVLQKMKEENISIRVASPKLIMEEAPESYKNVSEVVNT 490
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GIS K F+L+PVAVIKG
Sbjct: 491 CHDAGISTKCFRLKPVAVIKG 511
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ E L Q +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W
Sbjct: 133 IRTNLFYEDIKDKQEELTQLLFNNIPVGVGSQGCILCNHDKLDEALCLGMDWCVKEGYAW 192
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L AD + VS+RAKKRG+ Q+
Sbjct: 193 VEDKLNCEDNGRSLYADSNYVSVRAKKRGITQM 225
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E L Q +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK + E +S+
Sbjct: 147 EELTQLLFNNIPVGVGSQGCILCNHDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSL 206
Query: 476 F---DHIPVGVGSKGIIPM 491
+ +++ V +GI M
Sbjct: 207 YADSNYVSVRAKKRGITQM 225
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG +VN+ L+ L+ +E+ + + FLP V Q+ANV+ LPGIV S+ LPDVH
Sbjct: 37 MNVEGHIYVNEKLKHLIDDEIE-TYQLNRNTTFLPAVIQVANVSTLPGIVKASIALPDVH 95
Query: 61 S 61
+
Sbjct: 96 A 96
>gi|428184373|gb|EKX53228.1| 3'-phosphate RNA ligase RtcB [Guillardia theta CCMP2712]
Length = 497
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 239/484 (49%), Positives = 290/484 (59%), Gaps = 90/484 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCR-----PGMVGGF------------LPGV--KQIA 41
M V GVF+VN +++L+ +EL+ + GM GGF LPG+ K IA
Sbjct: 31 MRVPGVFYVNQQIKELLFDELKQFSKTSGAAAGM-GGFLPAMKQLANVAALPGIVGKSIA 89
Query: 42 -------------NVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMR 74
NVAA PG VG + V + + + D
Sbjct: 90 LPDVHAGYGFAIGNVAAFDMSDPEAVVSPGGVGFDINC-GVRLIRTNLFEKDVEPVKEKL 148
Query: 75 SSNIWKRSPLTLGAG----------NHYAEIQI---VDEIYDKWAASKMGIEDVGQVC-- 119
+ ++ P+ +G+ E+ I + E Y W K E+ G++
Sbjct: 149 AQAVFDHIPVGVGSQGIIPTNSNDLEEALEMGIDWSLREGY-SWPEDKEHCEEYGRMLQA 207
Query: 120 ----VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 173
V + RG Q+ T AGNHYAEIQ+VDEI+D AAS+MGIE+ GQV VMIHSG
Sbjct: 208 DPRKVSSRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFDARAASQMGIEEKGQVVVMIHSG 266
Query: 174 SRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH- 232
SRG GHQVATDAL M+KAM RDNI TNDRQL+CARI+S + + + + ++
Sbjct: 267 SRGLGHQVATDALTAMDKAMDRDNIRTNDRQLSCARIDSQEGQDYLAAMAAAANYAWVNR 326
Query: 233 -----VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAF 287
++ AFAK F +TPDDLDMH+IYDVSHNIAK EEHMVDG K LLVHRKGSTRAF
Sbjct: 327 SSMTFLVRQAFAKVFQSTPDDLDMHLIYDVSHNIAKVEEHMVDGNIKKLLVHRKGSTRAF 386
Query: 288 PPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRR 347
PPHHPLIPVDYQ TGQPVLIG GM+ETFGSTCHGAGRALSR KSR
Sbjct: 387 PPHHPLIPVDYQFTGQPVLIG-------------PAGMEETFGSTCHGAGRALSRNKSRN 433
Query: 348 NLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVA 407
NLDY++VL L+ +GI+IRVASPKLVMEEAPESYK+VT VVDTC A GIS K KLRP+A
Sbjct: 434 NLDYKDVLQVLQDKGIAIRVASPKLVMEEAPESYKDVTQVVDTCQAAGISNKVVKLRPIA 493
Query: 408 VIKG 411
VIKG
Sbjct: 494 VIKG 497
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ++FDHIPVGVGS+GIIP N+ DLEEALEMG+DWSLREGY W EDKEHCEEYGRML
Sbjct: 146 EKLAQAVFDHIPVGVGSQGIIPTNSNDLEEALEMGIDWSLREGYSWPEDKEHCEEYGRML 205
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP KVS RAKKRGLPQ+
Sbjct: 206 QADPRKVSSRAKKRGLPQL 224
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ++FDHIPVGVGS+GIIP N+ DLEEALEMG+DWSLREGY W EDKEH E +
Sbjct: 144 VKEKLAQAVFDHIPVGVGSQGIIPTNSNDLEEALEMGIDWSLREGYSWPEDKEHCEEYGR 203
Query: 474 SMFDHIPVGVGSKG 487
M P V S+
Sbjct: 204 -MLQADPRKVSSRA 216
>gi|300123121|emb|CBK24128.2| unnamed protein product [Blastocystis hominis]
Length = 518
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 235/496 (47%), Positives = 292/496 (58%), Gaps = 88/496 (17%)
Query: 3 VEGVFFVNDHLEKLMLEELRN-SCRPGMVGGF------------LPGVKQ---------- 39
V G +VN++L +L+ +ELR + R G GGF LPGV
Sbjct: 24 VPGYVYVNENLRELLFQELRQYTDRKGNSGGFIPAVKQLANVAALPGVVDHVCAAPDTHS 83
Query: 40 -----IANVAAL----------PGIVGRSV--GLPDVHSVPSTQ-WLSDNTMRSSNIWKR 81
I N+AA PG VG + G+ + + S Q L + ++
Sbjct: 84 GYGFAIGNIAAFDMNDPKAVVSPGGVGYDINCGVRLIRTNLSEQDVLPVKEELAQALYDH 143
Query: 82 SPLTLGAGN--HYAEIQIVDEIY----------DKWAASKMGIEDVGQVC------VMIH 123
P+ +G+ +VD + W+ K E+ G++ V
Sbjct: 144 IPVGVGSKGIIPITNQSLVDALSLGMDWCLREGYSWSEDKEHCEEYGRMLNADAAKVSAR 203
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+ RG Q+ T AGNHYAEIQ+VDEI+D AA KMGIE GQV +MIHSGSRG GHQV
Sbjct: 204 AQHRG-QPQLGTLGAGNHYAEIQVVDEIFDAVAAKKMGIEFCGQVVIMIHSGSRGLGHQV 262
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIY 235
A+D+LV ME+ M R IE NDRQLACA I S + + A A F + +
Sbjct: 263 ASDSLVDMERVMNRYGIEVNDRQLACAPIQSPEGQDYLRGMAAAANFAWVNRSVLTFLTR 322
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
AF+K F +PDDLDMHVIYDVSHNIAK E+HMV+GK TLLVHRKG+TRAFPPHHPLIP
Sbjct: 323 QAFSKVFKMSPDDLDMHVIYDVSHNIAKVEQHMVNGKPMTLLVHRKGATRAFPPHHPLIP 382
Query: 296 VDY----------QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKS 345
VDY Q TGQPVL+GG+MGTCSYVL GT+KG +ET+GSTCHGAGRALSR+K+
Sbjct: 383 VDYQVGVDAILSAQFTGQPVLVGGSMGTCSYVLVGTDKGFKETWGSTCHGAGRALSRSKA 442
Query: 346 ----------RRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVG 395
RR L Y+EV+ +L + I+IR+ASPKLVMEEAPESYK+V DV +TCH G
Sbjct: 443 RSDRRRCLMCRRELTYEEVIQRLREKNITIRMASPKLVMEEAPESYKDVEDVCNTCHEAG 502
Query: 396 ISKKTFKLRPVAVIKG 411
ISKK KLRP+AVIKG
Sbjct: 503 ISKKVLKLRPIAVIKG 518
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 67/79 (84%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LAQ+++DHIPVGVGSKGIIP+ + L +AL +GMDW LREGY W+EDKEHCEEYGRML
Sbjct: 134 EELAQALYDHIPVGVGSKGIIPITNQSLVDALSLGMDWCLREGYSWSEDKEHCEEYGRML 193
Query: 529 NADPSKVSMRAKKRGLPQV 547
NAD +KVS RA+ RG PQ+
Sbjct: 194 NADAAKVSARAQHRGQPQL 212
>gi|291234305|ref|XP_002737089.1| PREDICTED: hypothetical protein, partial [Saccoglossus kowalevskii]
Length = 454
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 225/426 (52%), Positives = 265/426 (62%), Gaps = 71/426 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCR-PGMVGGFL------------PGVKQ-------- 39
M VEG F+VND LE+LM +ELRN+CR PGM GGFL PG+
Sbjct: 32 MQVEGCFYVNDVLERLMFDELRNACRNPGM-GGFLPGMKQIANVAALPGIVHKSVGLPDV 90
Query: 40 -------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLS 69
I N+AA PG VG + DV V Q +
Sbjct: 91 HSGYGFAIGNMAAFDMSNPDSVVSPGGVGFDINCGVRLLRTNLCEKDVQPVKEQLAQSMF 150
Query: 70 DNTMRSSNIWKRSPLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------V 120
D+ P+T E+ + + E Y WA K E+ G++ V
Sbjct: 151 DHIPVGVGSKGVIPMTARDLEEALEMGMDWSLREGY-AWAEDKEHCEEFGRMLQADPNKV 209
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ RG Q+ T AGNHYAEIQ+VDEIYD A+ KMGI+ VGQVCVMIHSGSRG G
Sbjct: 210 SPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDSHASKKMGIDFVGQVCVMIHSGSRGLG 268
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQVATDALVQMEKAMKRD IE NDRQLACA+I S + + + K + ++
Sbjct: 269 HQVATDALVQMEKAMKRDKIEVNDRQLACAKITSQEGQDYLKGMAGAANYAFVNRTSMCF 328
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ A AK FNTTPDDLDMH+IYDVSHNIAK E+H++DGK+KTLLVHRKGSTRAFPPHHP
Sbjct: 329 LTRQAVAKVFNTTPDDLDMHMIYDVSHNIAKIEQHIIDGKEKTLLVHRKGSTRAFPPHHP 388
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQ+TGQPVLIGGTMGTCSYVLTGT++GM TFG+TCHGAGRA SRAKSRRNLDY
Sbjct: 389 LIPVDYQMTGQPVLIGGTMGTCSYVLTGTDEGMSRTFGTTCHGAGRAWSRAKSRRNLDYH 448
Query: 353 EVLNKL 358
+VL+KL
Sbjct: 449 DVLSKL 454
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQSMFDHIPVGVGSKG+IPM ARDLEEALEMGMDWSLREGY WAEDKEHCEE+GRML
Sbjct: 143 EQLAQSMFDHIPVGVGSKGVIPMTARDLEEALEMGMDWSLREGYAWAEDKEHCEEFGRML 202
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 203 QADPNKVSPRAKKRGLPQL 221
>gi|74208075|dbj|BAE29145.1| unnamed protein product [Mus musculus]
Length = 445
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 222/417 (53%), Positives = 255/417 (61%), Gaps = 67/417 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGFL PG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYD--KWAASKMGIEDVGQVC------VMI 122
+ P+ E+ + + + WA K E+ G++ V
Sbjct: 150 HIPVGVGSKGVIPMNAKDLEEALEMGVDRSLREGYAWAEDKEHCEEYGRMLQADPNKVSP 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQ
Sbjct: 210 RAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQ 268
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVI 234
VATDALV MEKAMKRD I NDRQLACARI S K A A + +
Sbjct: 269 VATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLT 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPLI
Sbjct: 329 RQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLI 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 389 AVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+D SLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDRSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>gi|226955334|gb|ACO95330.1| hypothetical protein [Dasypus novemcinctus]
Length = 442
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 229/474 (48%), Positives = 272/474 (57%), Gaps = 124/474 (26%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQV
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQV----------- 254
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDA 237
C I+S ++ Q T
Sbjct: 255 -----------------------------CVMIHSG-SRGLGHQVATV------------ 272
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPLI VD
Sbjct: 273 ----FNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVD 328
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
YQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+VL+K
Sbjct: 329 YQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDK 388
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 389 LADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 442
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>gi|256084902|ref|XP_002578664.1| hypothetical protein [Schistosoma mansoni]
gi|360042881|emb|CCD78291.1| hypothetical protein Smp_074870 [Schistosoma mansoni]
Length = 272
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/259 (71%), Positives = 204/259 (78%), Gaps = 12/259 (4%)
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
G++ +G V + G H VATDALV MEKAMKRD IE NDRQLACA INS + + +
Sbjct: 20 GMKQIGNVAAL-----PGIVH-VATDALVAMEKAMKRDKIEVNDRQLACAHINSEEGQDY 73
Query: 219 AKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 272
K + ++ + AFAK F++TPDDLDM +IYDVSHNIAK EEH VDGK
Sbjct: 74 LKAMAAAANYAWVNRSSMTFLARQAFAKIFHSTPDDLDMQIIYDVSHNIAKVEEHWVDGK 133
Query: 273 QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGST 332
KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK M ETFGST
Sbjct: 134 IKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKAMTETFGST 193
Query: 333 CHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCH 392
CHGAGRALSRAKSRRNLDY +VL +L+ +GISIRVASPKLVMEEAPESYKNVTDVVDTC
Sbjct: 194 CHGAGRALSRAKSRRNLDYTDVLAQLQEKGISIRVASPKLVMEEAPESYKNVTDVVDTCQ 253
Query: 393 AVGISKKTFKLRPVAVIKG 411
A GIS K KLRP+ VIKG
Sbjct: 254 AAGISNKVLKLRPIGVIKG 272
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 17 MLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV 50
M +ELRN R G GGFLPG+KQI NVAALPGIV
Sbjct: 1 MFDELRNFTRSGDYGGFLPGMKQIGNVAALPGIV 34
>gi|399218524|emb|CCF75411.1| unnamed protein product [Babesia microti strain RI]
Length = 510
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 222/495 (44%), Positives = 292/495 (58%), Gaps = 93/495 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELR------------------NSCRPGMVGG--FLP----G 36
MNV+G FF N+ L+ L+L+EL+ + PG+V G LP G
Sbjct: 25 MNVDGFFFANESLKVLLLDELKLYNARKTGFLPSIMQLANVAALPGIVKGSIALPDAHSG 84
Query: 37 VKQ--------IANVAAL----------PGIVGRSV--GLPDVHSVPSTQWLSDNT-MRS 75
+K I NVAA PG VG + G+ + + + + L D M +
Sbjct: 85 IKSSYLGYGFSIGNVAAFDMSRPESVVSPGGVGFDINCGVRLLRTNLNLKDLEDKKDMLA 144
Query: 76 SNIWKRSPLTLGAGNHYAEIQIVD-EIYD--------------KWAASKMGIEDVGQVC- 119
+ ++ + P+ +G+ I+ D +++D W+ + E+ G++
Sbjct: 145 TALFNKIPVGVGS---KGTIKCSDGDLFDILTRGMEWAEESGFAWSEDRERCEERGKMSQ 201
Query: 120 -----VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHS 172
V + RG Q+ T AGNHY E+Q+V+EIYD AA MG+E GQVC+MIHS
Sbjct: 202 ADATLVSDRAKKRGI-PQLGTLGAGNHYVEVQVVEEIYDSRAARAMGLEVEGQVCMMIHS 260
Query: 173 GSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD----- 227
GSRG GHQVA+DAL MEK NI TND QLAC+ INS + + K +
Sbjct: 261 GSRGLGHQVASDALNNMEK-----NIPTNDPQLACSHINSESGQRYLKCMAAAANYAWVN 315
Query: 228 -DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRA 286
+ H+ A ++ F+ DDLDMH+IYDVSHN+AK EEHMVDGK K LLVHRKG+TRA
Sbjct: 316 RSVMTHLSRVALSEVFDMDADDLDMHIIYDVSHNVAKIEEHMVDGKPKNLLVHRKGATRA 375
Query: 287 FPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSR 346
+PP H IP++Y GQPVLIGGTMGTCSYVLTGTEK M+ TFG+TCHGAGRA SR+ +R
Sbjct: 376 YPPRHKQIPLEYIDIGQPVLIGGTMGTCSYVLTGTEKAMELTFGTTCHGAGRASSRSSAR 435
Query: 347 RNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVV----------DTCHAVGI 396
+ L +V++ L+S+GI+IRVASP LVMEEAPE+YK+VT VV DTCH GI
Sbjct: 436 KTLSTNKVIDDLKSKGIAIRVASPSLVMEEAPEAYKDVTSVVDVSICIQLFSDTCHEAGI 495
Query: 397 SKKTFKLRPVAVIKG 411
SKK KL+P+AVIKG
Sbjct: 496 SKKCIKLKPIAVIKG 510
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
EDK+ + LA ++F+ IPVGVGSKG I + DL + L GM+W+ G+ W+ED+E CE
Sbjct: 137 EDKK--DMLATALFNKIPVGVGSKGTIKCSDGDLFDILTRGMEWAEESGFAWSEDRERCE 194
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G+M AD + VS RAKKRG+PQ+
Sbjct: 195 ERGKMSQADATLVSDRAKKRGIPQL 219
>gi|294944749|ref|XP_002784411.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897445|gb|EER16207.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 513
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/284 (60%), Positives = 212/284 (74%), Gaps = 8/284 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA-MK 194
AGNHYAE+Q+VDEIYDK+AA ++G++ GQVC+M+HSGSRG GHQVATDAL M KA M
Sbjct: 230 AGNHYAEVQVVDEIYDKYAAKQLGLDRPGQVCLMMHSGSRGLGHQVATDALQLMCKAAMS 289
Query: 195 RDN-IETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD 247
R N I ND QL+CA I+S + + + A F + AF+K F D
Sbjct: 290 RKNPIHLNDPQLSCAPIHSEEGQLYLRSMAAAANFAWVNRSTITFMARQAFSKVFKQDAD 349
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
DLDMHV+YD+SHN AK EEH+VDG K LL+HRKG+TRAFPP+HPL+ DYQ G+PVLI
Sbjct: 350 DLDMHVVYDISHNTAKLEEHLVDGVVKQLLIHRKGATRAFPPNHPLVASDYQSIGEPVLI 409
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
GG+MGTCSYVL GT G +ETF STCHGAGR LSR+ SRR LDY V ++L +G+S+RV
Sbjct: 410 GGSMGTCSYVLVGTHTGEKETFSSTCHGAGRVLSRSGSRRKLDYDHVTSELADRGVSMRV 469
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
ASPKL++EEAPESYK+VT VV+TCH GIS K K+RP+AV+KG
Sbjct: 470 ASPKLIVEEAPESYKDVTAVVNTCHQAGISSKVVKMRPIAVVKG 513
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 64/79 (81%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q+++D IPVGVGS+G++P+N L EAL+ GMDWS+REGY W EDK HCEE GR+L
Sbjct: 147 EQLVQALYDCIPVGVGSEGVVPVNQDTLREALQYGMDWSVREGYSWVEDKYHCEEQGRLL 206
Query: 529 NADPSKVSMRAKKRGLPQV 547
NA+ ++VS RA RG+PQ+
Sbjct: 207 NANATEVSRRAMIRGVPQL 225
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MNVEGVFFVNDHLEKLMLEEL-RNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDV 59
MNV F+ N+ + ++EEL R S RP GFLP +KQ+ NVA+LPGIVG ++GLPD+
Sbjct: 35 MNVPVKFYANEKIMPAVMEELQRYSLRPAGEAGFLPALKQLGNVASLPGIVGNAIGLPDI 94
Query: 60 HS 61
HS
Sbjct: 95 HS 96
>gi|328909085|gb|AEB61210.1| UPF0027 [Equus caballus]
Length = 229
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 173/229 (75%), Positives = 189/229 (82%), Gaps = 6/229 (2%)
Query: 189 MEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQF 242
ME+AMKRD I NDRQLACARI S K A A + + AFAK F
Sbjct: 1 MEEAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVF 60
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
NTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPLI VDYQLTG
Sbjct: 61 NTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTG 120
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
QPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+VL+KL G
Sbjct: 121 QPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMG 180
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 181 IAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 229
>gi|47208544|emb|CAF89494.1| unnamed protein product [Tetraodon nigroviridis]
Length = 531
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 152/175 (86%), Positives = 164/175 (93%)
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
AF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDG+Q+TLLVHRKGSTRAFPPHHPLIPV
Sbjct: 357 AFSKVFATTPDDLDMHVIYDVSHNIAKVEEHVVDGRQRTLLVHRKGSTRAFPPHHPLIPV 416
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
DYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+VL+
Sbjct: 417 DYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLD 476
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
KL GI+IRVASPKLVMEEAPESYKNVTDVVDTCH GIS+K KLRP+AVIKG
Sbjct: 477 KLADLGIAIRVASPKLVMEEAPESYKNVTDVVDTCHQAGISRKAIKLRPIAVIKG 531
>gi|6807709|emb|CAB70670.1| hypothetical protein [Homo sapiens]
Length = 197
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 151/175 (86%), Positives = 164/175 (93%)
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHHPLI V
Sbjct: 23 AFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAV 82
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
DYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+Q+VL+
Sbjct: 83 DYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLD 142
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 143 KLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 197
>gi|156088997|ref|XP_001611905.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799159|gb|EDO08337.1| uncharacterized protein family UPF0027 family protein [Babesia
bovis]
Length = 438
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 188/402 (46%), Positives = 229/402 (56%), Gaps = 69/402 (17%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG F N+ L KL+ +EL G FLP +KQ+ANVAALPGIV S+ LPD H
Sbjct: 12 MNVEGYVFANEKLSKLLFQELEQYTADS--GTFLPALKQLANVAALPGIVKGSIALPDAH 69
Query: 61 -----SVPSTQWLSDNT-------------MRSSNIWKRSPLTLGAGNHYAEIQIVDEIY 102
S+ + N + R+ LTL E Q+V I+
Sbjct: 70 SGYGFSIGNVAAFDMNNPEAVVSPGGVGFDINCGVRLLRTNLTLNDVTPVKE-QLVQSIF 128
Query: 103 D-----------------------------------KWAASKMGIEDVGQV----CVMIH 123
D WA K E+ G++ M+
Sbjct: 129 DHIPVGVGSQGIIPCTNAALNDILEYGMDWTVAQGYSWAEDKEHCEEFGRMIQADSTMVS 188
Query: 124 SGSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
S ++ G Q+ T AGNHYAE+Q+V+E+YDK AA MGI +V Q+CVMIHSGSRG GHQ
Sbjct: 189 SRAKKRGLPQMGTLGAGNHYAEVQVVEEVYDKLAAKAMGIHEVNQICVMIHSGSRGLGHQ 248
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVI 234
VATDAL+ ME + +I+ D+QL+CA+INS K A A + ++
Sbjct: 249 VATDALLHMEASPSASSIKVLDKQLSCAKINSPEGINYLKAMAAASNYAWVNRSAITFLM 308
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF+K F TPDDLDMH+IYDVSHNIAK EEHMVDG+ +TLLVHRKGSTRAF P HPL+
Sbjct: 309 RQAFSKTFGETPDDLDMHLIYDVSHNIAKVEEHMVDGQCQTLLVHRKGSTRAFGPLHPLV 368
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGA 336
P DYQL GQPVL+GGTMGTCSYVLTGTE M TFGSTCHGA
Sbjct: 369 PADYQLIGQPVLVGGTMGTCSYVLTGTELAMDLTFGSTCHGA 410
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 64/79 (81%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDHIPVGVGS+GIIP L + LE GMDW++ +GY WAEDKEHCEE+GRM+
Sbjct: 121 EQLVQSIFDHIPVGVGSQGIIPCTNAALNDILEYGMDWTVAQGYSWAEDKEHCEEFGRMI 180
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD + VS RAKKRGLPQ+
Sbjct: 181 QADSTMVSSRAKKRGLPQM 199
>gi|428168306|gb|EKX37253.1| 3'-phosphate RNA ligase RtcB [Guillardia theta CCMP2712]
Length = 669
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 156/289 (53%), Positives = 202/289 (69%), Gaps = 12/289 (4%)
Query: 129 FGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
G Q +GNHYAE+Q+V+E+YD+ AAS MG++ +G VC+M+HSGSRG GHQV TDA+ +
Sbjct: 387 LGVQSEGSGNHYAEVQVVEEVYDEEAASAMGLK-LGTVCIMLHSGSRGLGHQVCTDAVAE 445
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD------LDMHVIYDAFAKQF 242
EK I DRQLAC RI S + + + + L + +FA F
Sbjct: 446 AEKG-----ISVVDRQLACCRIKSKEGQKYLAAMRAAANFAFVNRCLMAKAVRQSFATIF 500
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
+L M +YDVSHNIAK EEHMVDG +K +LVHRKG+TRAF P P I Y+ G
Sbjct: 501 ERDEKELGMSTVYDVSHNIAKVEEHMVDGVKKKVLVHRKGATRAFGPGSPEICDKYRSIG 560
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
QPVL+GG+MGTCSYVLTGT K M+ TFGSTCHGAGRA+SR+++ R+LD + VL ++E +G
Sbjct: 561 QPVLVGGSMGTCSYVLTGTAKAMESTFGSTCHGAGRAMSRSQAMRSLDSRAVLKEVEDRG 620
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ RVA+ KLV EEAP+SYK+V++V++TCHA GIS+K KLRPV IKG
Sbjct: 621 CTARVATKKLVAEEAPQSYKDVSEVIETCHAAGISRKCVKLRPVICIKG 669
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M F+ N L K +L+E+ + G GGFL ++Q++NVA LPG+V S+G+PD+H
Sbjct: 185 MRSSASFYANKPLLKQVLKEMLENQANGSKGGFLSAIQQLSNVATLPGVVSSSIGMPDIH 244
Query: 61 S 61
S
Sbjct: 245 S 245
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 475 MFDHIPVGVGSKGII-----------------PMNARDLEEALEMGMDWSLREGYIWAED 517
+F +IPVGVG ++ + A++L++ L GM W+ W ED
Sbjct: 295 LFKNIPVGVGEGSVLGQADGKVSATRRAWRELSLYAQELDDILRRGMAWAEERNLCWPED 354
Query: 518 KEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+E EE G ADP VS RAK RG Q
Sbjct: 355 REVVEERGSFEGADPDAVSDRAKARGRNQC 384
>gi|403223729|dbj|BAM41859.1| uncharacterized protein TOT_040000239 [Theileria orientalis strain
Shintoku]
Length = 449
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/410 (43%), Positives = 241/410 (58%), Gaps = 77/410 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRN-SCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPD- 58
MNVEG F N++L KL+ +ELR + PG FLP +KQ+ANVAALPGIV S+ LPD
Sbjct: 34 MNVEGHLFANENLSKLLFDELRQFTDEPG---SFLPALKQLANVAALPGIVKSSIALPDA 90
Query: 59 -------VHSVPSTQWLSDNTMRSS-------NIWKRSPLTLGAGNHYAEI-----QIVD 99
+ +V + + N++ S N R L G Y +I Q+V
Sbjct: 91 HSGYGFSIGNVAAFDMDNCNSVVSPGGVGFDINCGVR---LLRTGLLYKDIEPIKEQLVQ 147
Query: 100 EIYD-----------------------------------KWAASKMGIEDVGQVC----- 119
+++D WA K E+ G++
Sbjct: 148 KLFDLIPVGVGCQGQIPCDSNDLDDILEYGMDWSVSSGYSWAEDKEHCEEFGRMVQADPT 207
Query: 120 -VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 176
V + RG Q+ T AGNHYAE+Q+V+EIYD+++A MGI+ +GQVCVM+H+GSRG
Sbjct: 208 VVSFRAKKRGLS-QIGTLGAGNHYAEVQVVEEIYDEYSAKVMGIDRIGQVCVMMHTGSRG 266
Query: 177 FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLD 230
GHQVA+DALV ME ++ + I+ ND+QLACARI+S + + + K + +
Sbjct: 267 LGHQVASDALVDMENSLNKSKIKVNDKQLACARIHSEEGRKYIKAMAAAANYAWVNRSVM 326
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
H+ +F + + DDLDMHV+YDVSHNIAK E+HM+DGK K LL+HRKGSTRAFPP+
Sbjct: 327 THLARKSFEEVLRESADDLDMHVVYDVSHNIAKIEDHMIDGKLKRLLLHRKGSTRAFPPY 386
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRAL 340
HPLI D+Q GQPVL+GGTMGTCSYVLTGT+ M T GSTCHG+G+++
Sbjct: 387 HPLISADFQHIGQPVLVGGTMGTCSYVLTGTQLAMDLTLGSTCHGSGKSI 436
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 70/93 (75%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G ++ + + E+L Q +FD IPVGVG +G IP ++ DL++ LE GMDWS+ GY W
Sbjct: 129 LRTGLLYKDIEPIKEQLVQKLFDLIPVGVGCQGQIPCDSNDLDDILEYGMDWSVSSGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEE+GRM+ ADP+ VS RAKKRGL Q+
Sbjct: 189 AEDKEHCEEFGRMVQADPTVVSFRAKKRGLSQI 221
>gi|440298181|gb|ELP90822.1| hypothetical protein EIN_027210 [Entamoeba invadens IP1]
Length = 535
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 180/477 (37%), Positives = 254/477 (53%), Gaps = 75/477 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M + + ND L +L+ EL N + F V+Q ANVA LPGIVG S+ +PD H
Sbjct: 68 MKQDAKIYCNDDLLELLAGELCND----ALNNFPSCVRQTANVATLPGIVG-SMAMPDAH 122
Query: 61 S---------------------VPSTQWLSDNT---MRSSNIWKR--------------S 82
S P N + +N+ KR
Sbjct: 123 SGYGFSIGGVAAMRLDEPEAVICPGGVGFDINCGVRLIRTNLTKRDIEPHKVRLADALFK 182
Query: 83 PLTLGAGNHYAEIQIVDEIYDK---------------WAASKMGIEDVGQVC----VMIH 123
+ G G A I +E +DK W E+ G++ ++
Sbjct: 183 KVPSGVGTK-ASIDFKEEDFDKLLTGGLEYMVEQGYAWEEDLKHCEEGGKIAGADPSLVS 241
Query: 124 SGSRGFGHQ-VAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
++ GHQ V T +GNHY E+Q VDEI+D AA MGI +VGQVCVM+H GSRG GHQ
Sbjct: 242 KVAKSRGHQQVGTLGSGNHYLEVQTVDEIFDAEAAKAMGITEVGQVCVMVHCGSRGLGHQ 301
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
V D + +MK+ + D+QL NS + + N + + + I
Sbjct: 302 VCQDYVAI---SMKKGHSNPVDKQLTGVPFNSEDGQKYFSAMNCCANFAFANRGMITYQI 358
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+AF + M ++YDV HNIAK EEH ++GK+ ++HRKG+TRAFPP+HP++
Sbjct: 359 REAFENIMGIKAKKMGMGLVYDVCHNIAKVEEHEIEGKKVKCVIHRKGATRAFPPNHPVL 418
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P DY++ GQP +IGG+MGTCSYVL GT+KGM+ +FGSTCHGAGR +SR + + + EV
Sbjct: 419 PEDYKMIGQPAIIGGSMGTCSYVLVGTQKGMENSFGSTCHGAGRRMSRVGAMKTVTSNEV 478
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +++ GI +R+ PKL EEA E+YK+VT+VV+TC A GISK +L+P+ V+KG
Sbjct: 479 IKRMKEMGIELRITDPKLAAEEADEAYKDVTEVVETCQAAGISKIVMRLKPMIVVKG 535
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H RLA ++F +P GVG+K I D ++ L G+++ + +GY W ED +HCEE G+
Sbjct: 172 HKVRLADALFKKVPSGVGTKASIDFKEEDFDKLLTGGLEYMVEQGYAWEEDLKHCEEGGK 231
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ ADPS VS AK RG QV
Sbjct: 232 IAGADPSLVSKVAKSRGHQQV 252
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
RLA ++F +P GVG+K I D ++ L G+++ + +GY W ED +H E
Sbjct: 175 RLADALFKKVPSGVGTKASIDFKEEDFDKLLTGGLEYMVEQGYAWEEDLKHCE 227
>gi|241625287|ref|XP_002409445.1| hypothetical protein IscW_ISCW024552 [Ixodes scapularis]
gi|215503163|gb|EEC12657.1| hypothetical protein IscW_ISCW024552 [Ixodes scapularis]
Length = 161
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/161 (86%), Positives = 151/161 (93%)
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
MHVIYDVSHNIAK E+H+VDGK +TLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT
Sbjct: 1 MHVIYDVSHNIAKVEQHVVDGKMRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 60
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNL+YQ+VL+K+ GISIRVASP
Sbjct: 61 MGTCSYVLTGTEQGMNETFGTTCHGAGRALSRAKSRRNLNYQDVLDKMNEMGISIRVASP 120
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
KLVMEEAPESYKNVTDVVDTCH GIS+K KLRP+AVIKG
Sbjct: 121 KLVMEEAPESYKNVTDVVDTCHEAGISRKCIKLRPIAVIKG 161
>gi|427786649|gb|JAA58776.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 161
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/161 (86%), Positives = 151/161 (93%)
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
MHVIYDVSHNIAK E+H+VDGK +TLLVHRKGSTRAFPPHHPLIPVDYQL+GQPVLIGGT
Sbjct: 1 MHVIYDVSHNIAKVEQHVVDGKMRTLLVHRKGSTRAFPPHHPLIPVDYQLSGQPVLIGGT 60
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLDYQ+VL+KL GISIRVASP
Sbjct: 61 MGTCSYVLTGTEQGMGETFGTTCHGAGRALSRAKSRRNLDYQDVLDKLNEMGISIRVASP 120
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
KLVMEEAPESYKNVTDVV+TCH GIS+K KLRP+AVIKG
Sbjct: 121 KLVMEEAPESYKNVTDVVNTCHEAGISRKCIKLRPIAVIKG 161
>gi|167380803|ref|XP_001735457.1| hypothetical protein [Entamoeba dispar SAW760]
gi|327488450|sp|B0EAV2.1|RTCB1_ENTDS RecName: Full=tRNA-splicing ligase RtcB homolog 1
gi|165902544|gb|EDR28341.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 535
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 182/479 (37%), Positives = 251/479 (52%), Gaps = 79/479 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
MN + F ND L L+ E+ + + V+Q AN A LPG+V
Sbjct: 68 MNGDAKIFCNDDLFNLLTFEMIKD----ISNNYPSCVRQTANAATLPGVVASLAMPDAHS 123
Query: 51 --GRSVG------LPDVHSV-----------PSTQWLSDNTMR----------SSNIWKR 81
G S+G L + +V + + N R + ++K+
Sbjct: 124 GYGFSIGGVVAMRLDNSEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKSRLADELFKQ 183
Query: 82 SPLTLGAGNHYAEIQIVDEIYDK---------------WAASKMGIEDVGQVC------V 120
P +G A+I E +D W E+ G++ V
Sbjct: 184 IPSGVGT---KAQIAFSPEDFDSIMTEGLEFLVKNGYAWEEDLSHCEEHGKIANADPSLV 240
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ SRG+ QV T +GNHY E+Q+VDEI D AA MGI +VGQVC+M+H GSRG G
Sbjct: 241 SKSAKSRGY-KQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGINEVGQVCIMVHCGSRGLG 299
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQV D + + MK D+QL NS + + N + + +
Sbjct: 300 HQVCQDYI---DLCMKSGICNPIDKQLTGVPFNSPIGQQYYSAMNCCANFAFANRGMITY 356
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
I AF P +DMH++YDV HNIAK EEH VD K+ +VHRKG+TRAFPP HP
Sbjct: 357 RIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHEVDNKKVQCIVHRKGATRAFPPQHP 416
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
I DY+ GQP +IGG+MGTCSYVL GT++GM+++FGSTCHGAGR +SR K+ NL +
Sbjct: 417 DISEDYKEIGQPAIIGGSMGTCSYVLVGTQEGMKKSFGSTCHGAGRKMSRVKAMDNLTSK 476
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V+N+++ GI +R+ PKL EEA E+YK+VT+VV+TC A GISK +L+P+ VIKG
Sbjct: 477 DVINRIKEMGIELRITDPKLAAEEADEAYKDVTEVVETCQAAGISKIVLRLKPLIVIKG 535
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
++H RLA +F IP GVG+K I + D + + G+++ ++ GY W ED HCEE+
Sbjct: 170 EQHKSRLADELFKQIPSGVGTKAQIAFSPEDFDSIMTEGLEFLVKNGYAWEEDLSHCEEH 229
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G++ NADPS VS AK RG QV
Sbjct: 230 GKIANADPSLVSKSAKSRGYKQV 252
>gi|56752795|gb|AAW24609.1| SJCHGC04957 protein [Schistosoma japonicum]
Length = 161
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 140/161 (86%), Positives = 146/161 (90%)
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
M +IYDVSHNIAK EEH VDGK KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT
Sbjct: 1 MQIIYDVSHNIAKVEEHWVDGKIKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 60
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGTCSYVLTGTEK M ETFGSTCHGAGRALSRAKSRRNLDY +VL +L+ +GISIRVASP
Sbjct: 61 MGTCSYVLTGTEKAMTETFGSTCHGAGRALSRAKSRRNLDYTDVLEQLQEKGISIRVASP 120
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
KLVMEEAPESYKNVTDVVDTC A GIS K KLRP+ VIKG
Sbjct: 121 KLVMEEAPESYKNVTDVVDTCQAAGISNKVLKLRPIGVIKG 161
>gi|67465219|ref|XP_648794.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|327488454|sp|C4M6T2.1|RTCB2_ENTHI RecName: Full=tRNA-splicing ligase RtcB homolog 2
gi|56465063|gb|EAL43408.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
gi|449706504|gb|EMD46339.1| protein C22orf28 family protein [Entamoeba histolytica KU27]
Length = 535
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 181/479 (37%), Positives = 249/479 (51%), Gaps = 79/479 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGR-------- 52
MN + F ND L L+ E+ + + V+Q AN A LPG+VG
Sbjct: 68 MNGDAKIFCNDDLLNLLTFEMIKD----ISNNYPSCVRQTANAATLPGVVGSLAMPDAHS 123
Query: 53 ----SVG------LPDVHSV-----------PSTQWLSDNTMR----------SSNIWKR 81
S+G L D +V + + N R + ++K+
Sbjct: 124 GYGFSIGGVVAMRLDDPEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKARLADELFKQ 183
Query: 82 SPLTLGAGNHYAEIQIVDEIYDK---------------WAASKMGIEDVGQVC------V 120
P +G A+I E +D W E+ G++ V
Sbjct: 184 IPSGVGT---QAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSLV 240
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ SRG+ QV T +GNHY E+Q+VDEI D AA MGI ++GQVC+M+H GSRG G
Sbjct: 241 SNSAKSRGY-KQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGITEIGQVCIMVHCGSRGLG 299
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQV D + MK D+QL NS + + N + + +
Sbjct: 300 HQVCQDYI---NLCMKSGICNPVDKQLTGVPFNSPIGQQYYSAMNCCANFAFANRGMITY 356
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
I AF P +DMH++YDV HNIAK EEH VD K+ +VHRKG+TRAFPP HP
Sbjct: 357 RIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHDVDNKKVQCIVHRKGATRAFPPQHP 416
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
I DY+ GQP +IGG+MGTCSYVL GT++GM+++FGSTCHGAGR +SR K+ NL +
Sbjct: 417 DISEDYKEIGQPAIIGGSMGTCSYVLVGTQEGMKKSFGSTCHGAGRKMSRTKAMDNLTSK 476
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V+N+++ GI +R+ PKL EEA E+YK+VT+VV+TC A ISK +L+P+ VIKG
Sbjct: 477 DVINRMKEMGIELRITDPKLAAEEADEAYKDVTEVVETCQAANISKIVLRLKPLIVIKG 535
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 425 HIPVGVGSKGIIPMNARDLEEAL---EMGMDWS-----LREGYIWAEDKEHFERLAQSMF 476
H G G++ M D E + +G D + +R + ++H RLA +F
Sbjct: 122 HSGYGFSIGGVVAMRLDDPEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKARLADELF 181
Query: 477 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 536
IP GVG++ I + D + ++ G+++ + GY W ED HCEE+G++ NADPS VS
Sbjct: 182 KQIPSGVGTQAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSLVS 241
Query: 537 MRAKKRGLPQV 547
AK RG QV
Sbjct: 242 NSAKSRGYKQV 252
>gi|407038485|gb|EKE39154.1| RtcB domain containing protein [Entamoeba nuttalli P19]
Length = 535
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 180/479 (37%), Positives = 249/479 (51%), Gaps = 79/479 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGR-------- 52
MN + F ND L L+ E+ + + V+Q AN A LPG+VG
Sbjct: 68 MNGDAKIFCNDDLLNLLTFEMIKD----ISNNYPSCVRQTANAATLPGVVGSLAMPDAHS 123
Query: 53 ----SVG------LPDVHSV-----------PSTQWLSDNTMR----------SSNIWKR 81
S+G L D +V + + N R + ++K+
Sbjct: 124 GYGFSIGGVVAMRLDDPEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKARLADELFKQ 183
Query: 82 SPLTLGAGNHYAEIQIVDEIYDK---------------WAASKMGIEDVGQVC------V 120
P +G A+I E +D W E+ G++ V
Sbjct: 184 IPSGVGT---QAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSLV 240
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ SRG+ QV T +GNHY E+Q+VDEI D AA MGI ++GQVC+M+H GSRG G
Sbjct: 241 SSSAKSRGY-KQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGITEIGQVCIMVHCGSRGLG 299
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQV D + MK D+QL NS + + N + + +
Sbjct: 300 HQVCQDYI---NLCMKSGICNPVDKQLTGVPFNSPIGQQYYSAMNCCANFAFANRGMITY 356
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
I AF P +DMH++YDV HNIAK EEH VD K+ ++HRKG+TRAFPP HP
Sbjct: 357 RIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHDVDNKKVQCIIHRKGATRAFPPQHP 416
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
I DY+ GQP +IGG+MGTCSYVL GT++GM+++FGSTCHGAGR +SR K+ NL +
Sbjct: 417 DISEDYKEIGQPAIIGGSMGTCSYVLVGTQEGMKKSFGSTCHGAGRKMSRTKAMDNLTSK 476
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V+N+++ GI +R+ PKL EEA E+YK+VT+VV+TC A ISK +L+P+ VIKG
Sbjct: 477 DVINRMKEMGIELRITDPKLAAEEADEAYKDVTEVVETCQAANISKIVLRLKPLIVIKG 535
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 425 HIPVGVGSKGIIPMNARDLEEAL---EMGMDWS-----LREGYIWAEDKEHFERLAQSMF 476
H G G++ M D E + +G D + +R + ++H RLA +F
Sbjct: 122 HSGYGFSIGGVVAMRLDDPEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKARLADELF 181
Query: 477 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 536
IP GVG++ I + D + ++ G+++ + GY W ED HCEE+G++ NADPS VS
Sbjct: 182 KQIPSGVGTQAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSLVS 241
Query: 537 MRAKKRGLPQV 547
AK RG QV
Sbjct: 242 SSAKSRGYKQV 252
>gi|119719187|ref|YP_919682.1| hypothetical protein Tpen_0269 [Thermofilum pendens Hrk 5]
gi|119524307|gb|ABL77679.1| protein of unknown function UPF0027 [Thermofilum pendens Hrk 5]
Length = 482
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 264/476 (55%), Gaps = 81/476 (17%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNV G+ ++ L M E+L ++Q+ANVA LPGI S+ LPD H
Sbjct: 23 MNVPGLVIADEVLISKMKEDLT--------------LEQVANVAMLPGIYKYSIVLPDGH 68
Query: 61 S---------------------------------VPSTQWLSDNTMR------SSNIWKR 81
V ST L++ +R + ++++
Sbjct: 69 QGYGFPIGGVAAFDAEKGVLSPGGVGYDINCGVRVLSTN-LTEQEVRPKLRELAETLFRK 127
Query: 82 SPLTLGAGN----HYAEIQIVDEIYDKWAASK--------MGIEDVGQV------CVMIH 123
P LG+ + +AE+ V E +WA + IE+ G++ V
Sbjct: 128 IPSGLGSTSGLRLSHAELDRVLEEGVEWAIERGYGWREDMEHIEEKGRMEGADADAVSNE 187
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+ RG +Q+ T +GNH+ E+Q VD+IYD A GIE GQV VMIH+GSRG GHQV
Sbjct: 188 AKQRG-SNQLGTLGSGNHFLEVQRVDKIYDPEVAKVFGIEREGQVTVMIHTGSRGLGHQV 246
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIY 235
A+D L ME+ +++ N+ DR+L S + + + T + H +
Sbjct: 247 ASDYLKIMERVVRKYNMPLPDRELVSVPATSPEAERYFAAMKAAANFAWTNRQVITHWVR 306
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
++F F T PD L ++VIYDV+HNIAK EEH+VDGK+ + VHRKG+TRAFPP HP IP
Sbjct: 307 ESFRAVFKTDPDKLGLNVIYDVAHNIAKLEEHVVDGKRVKVYVHRKGATRAFPPGHPEIP 366
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
DY+ GQPVLI G+MGT SY+L GT+K M TFGS+ HGAGR SRA++RR++ QE+
Sbjct: 367 ADYKSIGQPVLIPGSMGTASYILVGTQKAMDLTFGSSPHGAGRMQSRAEARRSVRGQEIK 426
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++LES+GI +R AS +V EEAP++YK+V VV AVGI++K ++ P+AV+KG
Sbjct: 427 SELESRGIVVRAASLAVVAEEAPDAYKDVDRVVMVADAVGIARKIVRMTPIAVVKG 482
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + LA+++F IP G+GS + ++ +L+ LE G++W++ GY W ED EH E
Sbjct: 112 EVRPKLRELAETLFRKIPSGLGSTSGLRLSHAELDRVLEEGVEWAIERGYGWREDMEHIE 171
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM AD VS AK+RG Q+
Sbjct: 172 EKGRMEGADADAVSNEAKQRGSNQL 196
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA+++F IP G+GS + ++ +L+ LE G++W++ GY W ED EH E
Sbjct: 120 LAETLFRKIPSGLGSTSGLRLSHAELDRVLEEGVEWAIERGYGWREDMEHIE 171
>gi|83317934|ref|XP_731376.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23491399|gb|EAA22941.1| Uncharacterized protein family UPF0027 [Plasmodium yoelii yoelii]
Length = 196
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/175 (76%), Positives = 151/175 (86%)
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
AF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLVHRKGSTRAFPP HPL+P+
Sbjct: 22 AFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLVHRKGSTRAFPPFHPLVPL 81
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
DYQ GQP+LIGGTMGT SYVLTGTEK M+ TFGSTCHGAGRALSR KSR +L Y +VL+
Sbjct: 82 DYQYCGQPILIGGTMGTYSYVLTGTEKAMENTFGSTCHGAGRALSRNKSRNSLSYSDVLS 141
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ + ISIRVASPKL+MEEAPESYKNV++VV TCH GIS K F+LRPVAVIKG
Sbjct: 142 NLKEKNISIRVASPKLIMEEAPESYKNVSEVVQTCHDSGISNKAFRLRPVAVIKG 196
>gi|156937187|ref|YP_001434983.1| hypothetical protein Igni_0393 [Ignicoccus hospitalis KIN4/I]
gi|156566171|gb|ABU81576.1| protein of unknown function UPF0027 [Ignicoccus hospitalis KIN4/I]
Length = 484
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 194/282 (68%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+IYD+ AA MGI GQV VM+H+GSRG GHQVA+D L++ME+AMK+
Sbjct: 204 SGNHFLEVQVVDKIYDERAAKAMGITHEGQVMVMVHTGSRGLGHQVASDYLIKMERAMKK 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+LA NS + + + A + T L H ++F + F T P++L
Sbjct: 264 YGIVVPDRELASVPFNSPEAQDYFKAMSAAANYAWTNRQLITHWTRESFKEVFKTDPENL 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DMH++YDV+HNIAK EEH VDGK+K L+VHRKG+TRAFPP HP IP DYQ GQPVLI G
Sbjct: 324 DMHIVYDVAHNIAKIEEHDVDGKRKKLVVHRKGATRAFPPGHPEIPQDYQSIGQPVLIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G G + + STCHGAGR LSRA + R +EV+ +L QG+ ++ A
Sbjct: 384 SMGTASYVLVGVPTGARVWY-STCHGAGRWLSRAAAVRQYRPREVIEQLSRQGVVLKAAQ 442
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V VV H VGISK +LRP+ V+KG
Sbjct: 443 ARVVAEEAPGAYKDVDRVVRVVHEVGISKLVARLRPIGVVKG 484
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++F ++P G+GS G + ++ +L++ LE G+ W++ GY W++D EH EE+
Sbjct: 117 RPKLKDLVYTLFRNVPSGLGSTGKVRLSVSELDKVLEEGVYWAVERGYGWSDDPEHIEEH 176
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM AD SKVSMRAK+RG PQ+
Sbjct: 177 GRMKYADASKVSMRAKQRGAPQL 199
>gi|284161915|ref|YP_003400538.1| hypothetical protein Arcpr_0802 [Archaeoglobus profundus DSM 5631]
gi|284011912|gb|ADB57865.1| protein of unknown function UPF0027 [Archaeoglobus profundus DSM
5631]
Length = 961
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/282 (51%), Positives = 190/282 (67%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++IYD+ A MG+E+ G V VM+H GSRG GHQV +D LV +++A+++
Sbjct: 681 SGNHFLEVQYVEKIYDEECAKAMGLEE-GMVTVMVHCGSRGLGHQVCSDFLVVLDRAVRK 739
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA INS + + A + + + H + + F K F + DDL
Sbjct: 740 YGIKLPDRQLACAPINSKEGQDYFGGMAASANYAWCNRQIITHWVRETFQKVFRMSEDDL 799
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H VDGK+ L VHRKG+TRAF P HP IP DYQ GQPVLI G
Sbjct: 800 GMELVYDVAHNIAKFETHKVDGKKMKLCVHRKGATRAFGPGHPDIPKDYQKIGQPVLIPG 859
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTEK M+ETFGSTCHG+GR +SRA ++R L +V N+L QGI +R
Sbjct: 860 SMGTPSYVLVGTEKAMEETFGSTCHGSGRVMSRAAAKRRLRGDQVKNRLLKQGIYVRATH 919
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ EEAPE+YK DVV+ H GISK +LRP+ V KG
Sbjct: 920 GALLAEEAPEAYKMSDDVVEVVHRAGISKIVARLRPLGVAKG 961
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R E + + L +F +P GVGS+G + ++ R+L E L G W++ GY +
Sbjct: 584 IRSNLTVDEVRPKIKELIDELFVAVPSGVGSEGRLRVSDRELNEILVEGARWAVENGYGY 643
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D EHCEE G M A P VS A++RG PQ+
Sbjct: 644 EKDLEHCEENGAMEGAKPEVVSRTARERGKPQL 676
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +F +P GVGS+G + ++ R+L E L G W++ GY + +D EH E
Sbjct: 600 LIDELFVAVPSGVGSEGRLRVSDRELNEILVEGARWAVENGYGYEKDLEHCE 651
>gi|427778599|gb|JAA54751.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 174
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/153 (86%), Positives = 143/153 (93%)
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
MHVIYDVSHNIAK E+H+VDGK +TLLVHRKGSTRAFPPHHPLIPVDYQL+GQPVLIGGT
Sbjct: 1 MHVIYDVSHNIAKVEQHVVDGKMRTLLVHRKGSTRAFPPHHPLIPVDYQLSGQPVLIGGT 60
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLDYQ+VL+KL GISIRVASP
Sbjct: 61 MGTCSYVLTGTEQGMGETFGTTCHGAGRALSRAKSRRNLDYQDVLDKLNEMGISIRVASP 120
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
KLVMEEAPESYKNVTDVV+TCH GIS+K KL
Sbjct: 121 KLVMEEAPESYKNVTDVVNTCHEAGISRKCIKL 153
>gi|104531589|gb|ABF72888.1| CG9987-like [Belgica antarctica]
Length = 369
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 180/391 (46%), Positives = 218/391 (55%), Gaps = 109/391 (27%)
Query: 5 GVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK-------------- 38
GVF+VN +LE LM EEL+NSCR +GGF LPG+
Sbjct: 1 GVFYVNKNLEPLMFEELKNSCRSDGIGGFLPGMKQIANVAALPGIVGKSVGLPDIHSGYG 60
Query: 39 -QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIWKRSP 83
I N+AA PG VG + V + + + D + +++ P
Sbjct: 61 FAIGNMAAFDMNDPLAIVSPGGVGFDINC-GVRLLRTNLFEEDVRPVQEQLAQSLFDHIP 119
Query: 84 LTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VMIHSG 125
+ +G+ G + ++E + WA K E+ G++ V + +
Sbjct: 120 VGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSMRAK 179
Query: 126 SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
RG Q+ T AGNHYAEIQ+VDEIYDKWAASKMGIE+ GQVCVMIHSGSRGFGHQVAT
Sbjct: 180 KRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAASKMGIEECGQVCVMIHSGSRGFGHQVAT 238
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKN--------------------------KA 217
DALV+M+KAMKRDNIE NDRQLACARI+S + +A
Sbjct: 239 DALVEMDKAMKRDNIEVNDRQLACARIHSEEGQNYLKAMAAAANFAWVNRSSMTFLTRQA 298
Query: 218 FAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 277
FAKQFNTTPDDLDM HVIYDVSHNIAK E H+VDGK+ LL
Sbjct: 299 FAKQFNTTPDDLDM--------------------HVIYDVSHNIAKVESHVVDGKEMKLL 338
Query: 278 VHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
VHRKG+TRAFPPHHPLIPVDYQLTGQPVL+G
Sbjct: 339 VHRKGATRAFPPHHPLIPVDYQLTGQPVLVG 369
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 108 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 167
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVSMRAKKRGLPQ+
Sbjct: 168 NADPSKVSMRAKKRGLPQL 186
>gi|67470472|ref|XP_651200.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|327488451|sp|C4M244.1|RTCB1_ENTHI RecName: Full=tRNA-splicing ligase RtcB homolog 1
gi|56467905|gb|EAL45814.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
gi|449709430|gb|EMD48699.1| protein C22orf28 family protein [Entamoeba histolytica KU27]
Length = 524
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 199/301 (66%), Gaps = 14/301 (4%)
Query: 121 MIHSGSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
++ +RG G +Q+ T +GNHY EIQ VDEI DK AA +MGI +GQ+C+MIH GSRG
Sbjct: 228 LVSQKARGRGRNQLGTLGSGNHYLEIQRVDEIMDKEAAKQMGISHIGQICIMIHCGSRGL 287
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD-------LD 230
GHQV D V M + + N D QL S+ + + K N + +
Sbjct: 288 GHQVCQD-FVDM--CVSQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAANYAFANRGMIS 344
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
HV F + F +P DLDMH++YDV HNIAK E H+VDGK+ +VHRKG+TRAF P
Sbjct: 345 YHV-RCTFEQVFQKSPKDLDMHLVYDVCHNIAKEESHLVDGKEIKCIVHRKGATRAFAPL 403
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
+P+IP Y+ GQP +IGG+MGTCSY+L GT++GM+++FGSTCHGAGR +SR + +N+
Sbjct: 404 NPVIPDAYKPIGQPAIIGGSMGTCSYMLVGTQEGMKKSFGSTCHGAGRKISRVNAMKNIS 463
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ +++ +GI +R+ PKL EEA ++YK+V +VV+TC + GIS+ FKL+P+ V+K
Sbjct: 464 SDSVVEEMKKKGIELRITDPKLAAEEADDAYKDVKEVVETCQSAGISRIVFKLKPLIVVK 523
Query: 411 G 411
G
Sbjct: 524 G 524
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H LA ++ +IP GVG+ + +++ E + G++W +++G W ED +CEE GR
Sbjct: 161 HLAELADALQKNIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCEENGR 220
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
++N+DP VS +A+ RG Q+
Sbjct: 221 IINSDPHLVSQKARGRGRNQL 241
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M + F N+ L +L++ EL N +PG F V+Q ANVA LPG++ +S+ +PD H
Sbjct: 56 MKNDAEMFCNEDLFELLMNELLNE-QPG--ASFSSCVRQTANVATLPGVI-KSLAMPDAH 111
Query: 61 S 61
S
Sbjct: 112 S 112
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++ +IP GVG+ + +++ E + G++W +++G W ED + E
Sbjct: 165 LADALQKNIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCE 216
>gi|407042416|gb|EKE41311.1| RtcB domain containing protein [Entamoeba nuttalli P19]
Length = 524
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 198/301 (65%), Gaps = 14/301 (4%)
Query: 121 MIHSGSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
++ +RG G +Q+ T +GNHY EIQ VDEI DK AA +MGI +GQ+C+MIH GSRG
Sbjct: 228 LVSQKARGRGRNQLGTLGSGNHYLEIQRVDEIMDKEAAKQMGISHIGQICIMIHCGSRGL 287
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD-------LD 230
GHQV D V M + + N D QL S+ + + K N + +
Sbjct: 288 GHQVCQD-FVDM--CVSQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAANYAFANRGMIS 344
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
HV F + F P DLDMH++YDV HNIAK E H++DGK+ ++HRKG+TRAF P
Sbjct: 345 YHV-RCTFEQVFQKAPKDLDMHLVYDVCHNIAKEESHLIDGKEIKCIIHRKGATRAFAPL 403
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
+P+IP Y+ GQP +IGG+MGTCSY+L GT++GM++TFGSTCHGAGR +SR + +N+
Sbjct: 404 NPVIPDAYKPIGQPAIIGGSMGTCSYMLVGTQEGMKKTFGSTCHGAGRKISRVNAMKNIS 463
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ +++ +GI +R+ PKL EEA ++YK+V +VV+TC + GIS+ FKL+P+ V+K
Sbjct: 464 SDSVVEEMKKKGIELRITDPKLAAEEADDAYKDVKEVVETCQSAGISRIVFKLKPLIVVK 523
Query: 411 G 411
G
Sbjct: 524 G 524
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H LA ++ +IP GVG+ + +++ E + G++W +++G W ED +CEE GR
Sbjct: 161 HLAELADALQKNIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCEENGR 220
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
++N+DP VS +A+ RG Q+
Sbjct: 221 IINSDPRLVSQKARGRGRNQL 241
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M + F ND L +L++ EL N +PG F V+Q ANVA LPG++ +S+ +PD H
Sbjct: 56 MKNDAEMFCNDDLFELLMNELLNE-QPG--ASFSSCVRQTANVATLPGVI-KSLAMPDAH 111
Query: 61 S 61
S
Sbjct: 112 S 112
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++ +IP GVG+ + +++ E + G++W +++G W ED + E
Sbjct: 165 LADALQKNIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCE 216
>gi|73748627|ref|YP_307866.1| hypothetical protein cbdb_A801 [Dehalococcoides sp. CBDB1]
gi|289432652|ref|YP_003462525.1| hypothetical protein DehalGT_0703 [Dehalococcoides sp. GT]
gi|452203612|ref|YP_007483745.1| putative RtcB family protein [Dehalococcoides mccartyi DCMB5]
gi|452205047|ref|YP_007485176.1| putative RtcB family protein [Dehalococcoides mccartyi BTF08]
gi|73660343|emb|CAI82950.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|288946372|gb|ADC74069.1| protein of unknown function UPF0027 [Dehalococcoides sp. GT]
gi|452110671|gb|AGG06403.1| putative RtcB family protein [Dehalococcoides mccartyi DCMB5]
gi|452112103|gb|AGG07834.1| putative RtcB family protein [Dehalococcoides mccartyi BTF08]
Length = 486
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/441 (39%), Positives = 238/441 (53%), Gaps = 69/441 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPD--------VHSVPSTQWLSDNTMRSSNI---------- 78
++QIANVA LPGI+GRS+ +PD + V +T+ +SD + +
Sbjct: 49 IEQIANVAFLPGIMGRSMAMPDIHWGYGFPIGGVAATR-ISDGVISPGGVGFDINCGTRL 107
Query: 79 ---------------------WKRSPLTLGA-GNHYAEIQIVDEIYDK---WAASKMGIE 113
+ + P +G+ GN +D + + WA K G+
Sbjct: 108 LRTNLSVEEVQPKIDELLNELFSKIPSGVGSSGNIKLSGTDIDNVMTRGGSWALEK-GMG 166
Query: 114 DVGQVCVMIHSGS---------------RGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
+ + + SGS RG Q+ T +GNH+ E+Q+VDEI+D A+
Sbjct: 167 EAEDIKLTEESGSLSGANPDKVSNKAKTRG-ASQLGTLGSGNHFLEVQVVDEIFDPEVAA 225
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
G++ +GQV +IH+GSRG GHQV TD + + +A+K+ I DRQLACA + S+ +
Sbjct: 226 VFGVQALGQVLFLIHTGSRGLGHQVCTDYVQLLNEAVKKYGINLPDRQLACAPLKSDDGQ 285
Query: 217 AFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ + H DAF K F DL M IYDV+HNIAK EEHMVD
Sbjct: 286 NYLAAMACAANYAWANRQCITHWARDAFMKVFEKGRLDLGMDQIYDVAHNIAKIEEHMVD 345
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK + + VHRKG+TR+FP P IP Y+ GQPV+I G MG SYV GTE M+ETFG
Sbjct: 346 GKVQNVCVHRKGATRSFPAGRPEIPAVYRKVGQPVIIPGDMGRYSYVAVGTETAMRETFG 405
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
STCHGAGR LSR +++ ++L+ L SQGISIRV + EEA E+YK+V DVV+
Sbjct: 406 STCHGAGRILSRGAAKKTTSGTQLLDTLRSQGISIRVGDIGSLAEEASEAYKDVADVVEV 465
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
H GI++ FK RP+ VIKG
Sbjct: 466 THKAGIARNIFKTRPLGVIKG 486
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +F IP GVGS G I ++ D++ + G W+L +G
Sbjct: 108 LRTNLSVEEVQPKIDELLNELFSKIPSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGE 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED + EE G + A+P KVS +AK RG Q+
Sbjct: 168 AEDIKLTEESGSLSGANPDKVSNKAKTRGASQL 200
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAED 464
+ L +F IP GVGS G I ++ D++ + G W+L +G AED
Sbjct: 122 DELLNELFSKIPSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGEAED 170
>gi|11498468|ref|NP_069696.1| hypothetical protein AF0862 [Archaeoglobus fulgidus DSM 4304]
gi|74513477|sp|O29399.1|RTCB_ARCFU RecName: Full=tRNA-splicing ligase RtcB
gi|2649735|gb|AAB90372.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 482
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+++D+ A+K GIE+ G V VMIH GSRG GHQV TD L +++A+K+
Sbjct: 202 SGNHFLEVQYVDKVFDEKVAAKFGIEE-GMVTVMIHCGSRGLGHQVCTDFLEVLDRAVKK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA INS + + + + + + H + + F K + DDL
Sbjct: 261 YGIKLPDRQLACAPINSKEGQDYFAGMAASANYAWCNRQIIAHWVRETFQKVMGMSEDDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK EEH VDGK+ L VHRKG+TRAF P +P DY+ GQPVLI G
Sbjct: 321 GMELVYDVAHNIAKFEEHRVDGKKMKLCVHRKGATRAFGPGLKEVPEDYRDVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GTEK M+ETFGSTCHG+GR +SRA ++R L V LE +GI +R
Sbjct: 381 SMGTPSYILVGTEKAMEETFGSTCHGSGRVMSRAAAKRKLRGNVVKQNLERKGIYVRATH 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ EEAPE+YK DVVD H GISK +LRP+ V KG
Sbjct: 441 GALLAEEAPEAYKLSDDVVDVVHRAGISKLVARLRPLGVAKG 482
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K ++L +F +P GVGS+G + ++ R+L+E G W++ GY + D +HCEE
Sbjct: 115 KPLIKKLIDELFVAVPSGVGSEGRLRVSDRELDEIFVEGARWAVENGYGYERDLKHCEEE 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G + A P VS +A+ RG PQ+
Sbjct: 175 GALEGARPEVVSKKARDRGRPQL 197
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++L +F +P GVGS+G + ++ R+L+E G W++ GY + D +H E
Sbjct: 117 LIKKLIDELFVAVPSGVGSEGRLRVSDRELDEIFVEGARWAVENGYGYERDLKHCE 172
>gi|124027405|ref|YP_001012725.1| hypothetical protein Hbut_0518 [Hyperthermus butylicus DSM 5456]
gi|123978099|gb|ABM80380.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
Length = 484
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+IYD A MGI GQV VM+H+GSRG GHQVA+D L+ ME+AM++
Sbjct: 204 SGNHFLEVQVVDKIYDPKLAEAMGITHEGQVMVMVHTGSRGLGHQVASDYLMIMERAMRK 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+LA NS + + + K T L + ++F K F+ PD L
Sbjct: 264 YGIRPPDRELASVPFNSREGQDYFKAMAAAANFAWTNRQLITYWARESFKKVFHRDPDQL 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM ++YDV+HNIAK EEH VDGK+K L+VHRKG+TRAFPP HP IP DYQ GQPVLI G
Sbjct: 324 DMVIVYDVAHNIAKLEEHDVDGKRKQLIVHRKGATRAFPPGHPQIPKDYQAIGQPVLIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G G + + + HGAGR LSRA ++R Y +V+ +LE++GI IR +
Sbjct: 384 SMGTASYVLVGVPTGARAWY-TAPHGAGRWLSRAAAKRMKSYTQVVRELEAKGILIRASD 442
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V V H VGI+K +LRP+AV KG
Sbjct: 443 RATVVEEMPQAYKDVDRVALVAHRVGIAKMVVRLRPLAVTKG 484
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K L +F +IP G+GS G I ++ ++L + L+ G++W+++ GY WAED +H EE
Sbjct: 117 KPKLRELIDELFRNIPSGLGSSGKIRLSIQELNKVLDEGVEWAVQRGYGWAEDPDHIEER 176
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G AD SKVS RAK+RG Q+
Sbjct: 177 GSWTAADSSKVSDRAKRRGAEQL 199
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +F +IP G+GS G I ++ ++L + L+ G++W+++ GY WAED +H E
Sbjct: 123 LIDELFRNIPSGLGSSGKIRLSIQELNKVLDEGVEWAVQRGYGWAEDPDHIE 174
>gi|159905664|ref|YP_001549326.1| hypothetical protein MmarC6_1281 [Methanococcus maripaludis C6]
gi|159887157|gb|ABX02094.1| protein of unknown function UPF0027 [Methanococcus maripaludis C6]
Length = 480
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 174/441 (39%), Positives = 240/441 (54%), Gaps = 72/441 (16%)
Query: 38 KQIANVAALPGIVGRSVGLPD-----------------VHSVPS-----------TQWLS 69
+QIANVA LPGI S+ +PD V V S + +
Sbjct: 45 EQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGGVGFDINCGVRLVK 104
Query: 70 DNTMRS----------SNIWKRSPLTLGAGNHYAEIQIVDEIYDK--------------- 104
N R+ S I+K P LG+ +I+I + D
Sbjct: 105 TNLTRNDVTPKLKELLSEIFKNVPSGLGSK---GKIRITKDEIDNVLEEGVSWAVEEGYG 161
Query: 105 WAASKMGIEDVGQV------CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
W IE+ G++ V ++ RG Q+ + +GNH+ E+Q VDEI+D+ AA
Sbjct: 162 WKKDITHIEEHGKMKEADPTLVSDNAKKRGL-PQLGSLGSGNHFLEVQYVDEIFDEEAAK 220
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
G+ QV +MIH+GSRG GHQ+ D L ME A K+ NI+ DRQLACA INS + +
Sbjct: 221 TFGVSP-DQVVLMIHTGSRGLGHQICADYLRYMENAAKKYNIKLPDRQLACAPINSEEGQ 279
Query: 217 AFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + + L H I ++F F T+ +DL+M +IYDV+HNIAK E+H+VD
Sbjct: 280 KYFKAMSCGANYAWANRQLITHWIRESFETVFKTSAEDLEMDIIYDVAHNIAKKEQHLVD 339
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
G K ++VHRKG+TRAF P H IP DY GQPV+I G MGT SY++ GTEK M+ETFG
Sbjct: 340 GVLKNVIVHRKGATRAFGPGHAEIPSDYANIGQPVIIPGDMGTASYLMHGTEKAMEETFG 399
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
ST HGAGRALSR K+ + EV L+ +GI + S ++ EE PE+YK++ +V +
Sbjct: 400 STAHGAGRALSRVKALKLYSGNEVQEALQKRGILVMADSKGVIAEECPEAYKDIENVAEI 459
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GIS K K++P+ V+KG
Sbjct: 460 CHDSGISLKVAKMKPMGVVKG 480
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L +F ++P G+GSKG I + +++ LE G+ W++ EGY W +D H EE+G+M
Sbjct: 116 LKELLSEIFKNVPSGLGSKGKIRITKDEIDNVLEEGVSWAVEEGYGWKKDITHIEEHGKM 175
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADP+ VS AKKRGLPQ+
Sbjct: 176 KEADPTLVSDNAKKRGLPQL 195
>gi|256810568|ref|YP_003127937.1| hypothetical protein Mefer_0616 [Methanocaldococcus fervens AG86]
gi|256793768|gb|ACV24437.1| protein of unknown function UPF0027 [Methanocaldococcus fervens
AG86]
Length = 480
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/282 (48%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++++D+ AA G+E+ QV VM+H+GSRG GHQ+ TD L MEKA K
Sbjct: 200 SGNHFLEVQYVEKVFDEEAAEVFGVEE-NQVVVMVHTGSRGLGHQICTDYLRIMEKAAKN 258
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA S + +++ K + + H + ++F + F +DL
Sbjct: 259 YGIKLPDRQLACAPFESEEGQSYFKAMCCGANYAWANRQMITHWVRESFEEVFGINAEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH+VDG++ ++VHRKG+TRAF P HP IP +Y+ GQPV+I G
Sbjct: 319 EMSIVYDVAHNIAKKEEHIVDGRKVNVIVHRKGATRAFSPKHPQIPKEYKEIGQPVIIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTE M+ETFGST HGAGR LSRAK+ + +EV KL GI S
Sbjct: 379 DMGTASYLMRGTETAMKETFGSTAHGAGRKLSRAKALKLWKGKEVQRKLAEMGIVAMSDS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAPE+YKNV V DTCH GIS K ++RP+ VIKG
Sbjct: 439 KAVMAEEAPEAYKNVDLVADTCHKAGISLKVARMRPLGVIKG 480
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 406 VAVIKGIYLNERLAQSMFD-HIPVGVGSKGIIPMNARD-LEEALEMGMDWS-----LREG 458
VA + GIY + + +M D H G G+ + RD + +G D + +R
Sbjct: 50 VACLPGIY---KYSIAMPDVHYGYGFPIGGVAAFDQRDGVISPGGVGFDINCGVRLIRTN 106
Query: 459 YIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDK 518
E + + L +++F ++P G+GSKGI+ + +++ LE G+ W++REGY W ED
Sbjct: 107 LTKEEVQPKIKELVKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVREGYGWEEDL 166
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E EE+G + +AD S VS +AK+RG Q+
Sbjct: 167 EFIEEHGCLKDADASYVSDKAKERGRVQL 195
>gi|134045232|ref|YP_001096718.1| hypothetical protein MmarC5_0186 [Methanococcus maripaludis C5]
gi|132662857|gb|ABO34503.1| protein of unknown function UPF0027 [Methanococcus maripaludis C5]
Length = 480
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 173/438 (39%), Positives = 240/438 (54%), Gaps = 66/438 (15%)
Query: 38 KQIANVAALPGIVGRSVGLPD-----------------VHSVPS-----------TQWLS 69
+QIANVA LPGI S+ +PD V V S + +
Sbjct: 45 EQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGGVGFDINCGVRLVK 104
Query: 70 DNTMRS----------SNIWKRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAA 107
N R+ S I+K P LG+ G +D + ++ W
Sbjct: 105 TNLTRNDVTPKLKELLSEIFKNVPSGLGSKGKIRVTKDEIDNVLEEGVSWAVEEGYGWEN 164
Query: 108 SKMGIEDVGQV------CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMG 159
IE+ G++ V ++ RG Q+ + +GNH+ E+Q VDEI+D+ AA G
Sbjct: 165 DIKHIEEHGKMKEADPTLVSDNAKKRGL-PQLGSLGSGNHFLEVQYVDEIFDEEAAKTFG 223
Query: 160 IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFA 219
+ QV +MIH+GSRG GHQ+ D L ME A K+ NI+ DRQLACA INS + + +
Sbjct: 224 VSP-DQVVLMIHTGSRGLGHQICADYLRYMENAAKKYNIKLPDRQLACAPINSEEGQKYF 282
Query: 220 KQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 273
K + + L H I ++F F T+ +DL+M +IYDV+HNIAK E+H+VDG
Sbjct: 283 KAMSCGANYAWANRQLITHWIRESFETVFKTSAEDLEMDIIYDVAHNIAKKEQHLVDGVL 342
Query: 274 KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTC 333
K ++VHRKG+TRAF P H IP DY GQPV+I G MGT SY++ GTEK M+ETFGST
Sbjct: 343 KNVIVHRKGATRAFGPGHAEIPADYANIGQPVIIPGDMGTASYLMHGTEKAMEETFGSTA 402
Query: 334 HGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHA 393
HGAGRALSR K+ + EV L+ +GI + S ++ EE PE+YK++ +V + CH
Sbjct: 403 HGAGRALSRVKALKLYRGNEVQEALQKRGILVMADSKGVIAEECPEAYKDIENVAEICHD 462
Query: 394 VGISKKTFKLRPVAVIKG 411
GIS K K++P+ V+KG
Sbjct: 463 SGISLKVAKMKPMGVVKG 480
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L +F ++P G+GSKG I + +++ LE G+ W++ EGY W D +H EE+G+M
Sbjct: 116 LKELLSEIFKNVPSGLGSKGKIRVTKDEIDNVLEEGVSWAVEEGYGWENDIKHIEEHGKM 175
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADP+ VS AKKRGLPQ+
Sbjct: 176 KEADPTLVSDNAKKRGLPQL 195
>gi|333910563|ref|YP_004484296.1| hypothetical protein [Methanotorris igneus Kol 5]
gi|333751152|gb|AEF96231.1| protein of unknown function UPF0027 [Methanotorris igneus Kol 5]
Length = 480
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 190/282 (67%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ VD+++D+ A GIE+ QV VM+H+GSRG GHQ+ D + MEKA K+
Sbjct: 200 SGNHFLEIQYVDKVFDEETAEVFGIEE-NQVVVMVHTGSRGLGHQICADYIRVMEKAAKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA I S + + K + + H + ++F K F T+ +DL
Sbjct: 259 YGIKLPDRQLACAPIESEEGIEYYKAMCCGANYAWANRQMITHWVRESFEKVFKTSAEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M++IYDV+HNIAK EEH++DGK K ++VHRKG+TRAF P LIP +Y+ GQPV+I G
Sbjct: 319 EMNIIYDVAHNIAKIEEHVIDGKTKKVVVHRKGATRAFGPGSELIPKEYRKVGQPVIIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTEK M+ETFGST HGAGR LSRAK+ + +E+ KLE +GI + S
Sbjct: 379 DMGTASYLMHGTEKAMEETFGSTAHGAGRTLSRAKALKLWKGKEIKAKLEKEGIIVMADS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EE PE+YK++ V D CH GIS K +++P+ V+KG
Sbjct: 439 KAVIAEECPEAYKSIDLVADVCHKSGISLKVSRMKPMGVVKG 480
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R E K L +F ++P G+GSKG I + ++++ LE G W++ EGY W
Sbjct: 103 IRTNLTKEEVKPKIRELVSEIFKNVPSGLGSKGKIRITKNEIDDVLEEGAKWAINEGYGW 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED + EE+G M +AD S VS AKKRGLPQ+
Sbjct: 163 DEDIKFLEEHGCMRDADASLVSDSAKKRGLPQL 195
>gi|45358955|ref|NP_988512.1| hypothetical protein MMP1392 [Methanococcus maripaludis S2]
gi|74553807|sp|Q6LXF9.1|RTCB_METMP RecName: Full=tRNA-splicing ligase RtcB
gi|45047821|emb|CAF30948.1| Protein of unknown function UPF0027 [Methanococcus maripaludis S2]
Length = 480
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/282 (49%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG GHQ+ D L ME A K+
Sbjct: 200 SGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLGHQICADYLRYMENAAKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NI+ DRQLACA INS + + + K + + L H I ++F F T+ +DL
Sbjct: 259 YNIKLPDRQLACAPINSEEGQKYFKAMSCGANYAWANRQLITHWIRESFESVFKTSAEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M +IYDV+HNIAK E+H+VDG K ++VHRKG+TRAF P H IP DY GQPV+I G
Sbjct: 319 EMDIIYDVAHNIAKKEQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTEK M++TFGST HGAGRALSR K+ + EV L+ +GI + S
Sbjct: 379 DMGTASYLMHGTEKAMEQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILVMADS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EE PE+YK++ +V D CH GIS K K++P+ V+KG
Sbjct: 439 KGVIAEECPEAYKDIENVADICHDSGISLKVAKMKPMGVVKG 480
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L +F ++P G+GSKG I + +++ LE G+ W++ E Y W D +H EE+G+M
Sbjct: 116 LKELLSEIFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWAVEEEYGWERDIKHIEEHGKM 175
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADP+ VS AKKRGLPQ+
Sbjct: 176 KEADPTLVSDNAKKRGLPQL 195
>gi|297527439|ref|YP_003669463.1| hypothetical protein Shell_1476 [Staphylothermus hellenicus DSM
12710]
gi|297256355|gb|ADI32564.1| protein of unknown function UPF0027 [Staphylothermus hellenicus DSM
12710]
Length = 483
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/308 (47%), Positives = 200/308 (64%), Gaps = 12/308 (3%)
Query: 112 IEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 169
I D G+V R +Q+ T AGNH+ E+Q+VD+IYD AA MGI GQV VM
Sbjct: 180 IADAGKVS---RRAKRRGHNQLGTLGAGNHFLEVQVVDKIYDPEAAKAMGITHEGQVTVM 236
Query: 170 IHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNT----- 224
IH+GSRG GHQVA+D L+ ME+AM++ I DR+LA + + + + K
Sbjct: 237 IHTGSRGLGHQVASDYLLIMERAMRKYGIRPPDRELASLPFKTPEAQEYFKAMAAAANFA 296
Query: 225 -TPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGS 283
T + MH ++F + F+ P+DL M +IYDV+HNIAK EEH+VDGK+ ++VHRKG+
Sbjct: 297 WTNRQIIMHWTRESFKQVFHRDPEDLGMKLIYDVAHNIAKIEEHIVDGKKYKVVVHRKGA 356
Query: 284 TRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA 343
TRAFPP HP IP DYQ GQPVLI G+MGT SY+L GT+KG++ T+ S HGAGR +SR
Sbjct: 357 TRAFPPGHPEIPKDYQSIGQPVLIPGSMGTASYILVGTKKGVR-TWHSAPHGAGRWMSRG 415
Query: 344 KSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ R + V+ +L +GI +R A+ +++ EEAP +YK+V VV H VGI K +L
Sbjct: 416 AAIRTYRPERVVEELSRKGIMLRAATRRVISEEAPGAYKDVDRVVLVAHKVGIGKLVVRL 475
Query: 404 RPVAVIKG 411
RP+ V+KG
Sbjct: 476 RPMGVVKG 483
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++F ++P GVG+ G + ++ L+E L G++W++ G+ W ED EH EE
Sbjct: 116 RPRLKELVNTLFRNVPSGVGATGKLRLSFAQLDEVLNRGVEWAVENGFGWPEDMEHIEER 175
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G AD KVS RAK+RG Q+
Sbjct: 176 GSWKIADAGKVSRRAKRRGHNQL 198
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F ++P GVG+ G + ++ L+E L G++W++ G+ W ED EH E
Sbjct: 122 LVNTLFRNVPSGVGATGKLRLSFAQLDEVLNRGVEWAVENGFGWPEDMEHIE 173
>gi|340624702|ref|YP_004743155.1| hypothetical protein GYY_07790 [Methanococcus maripaludis X1]
gi|339904970|gb|AEK20412.1| hypothetical protein GYY_07790 [Methanococcus maripaludis X1]
Length = 480
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/282 (49%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG GHQ+ D L ME A K+
Sbjct: 200 SGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLGHQICADYLRYMENAAKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NI+ DRQLACA INS + + + K + + L H I ++F F T+ +DL
Sbjct: 259 YNIKLPDRQLACAPINSEEGQKYFKAMSCGANYAWANRQLITHWIRESFETVFKTSAEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M +IYDV+HNIAK E+H+VDG K ++VHRKG+TRAF P H IP DY GQPV+I G
Sbjct: 319 EMDIIYDVAHNIAKKEQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTEK M++TFGST HGAGRALSR K+ + EV L+ +GI + S
Sbjct: 379 DMGTASYLMHGTEKAMEQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILVMADS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EE PE+YK++ +V D CH GIS K K++P+ V+KG
Sbjct: 439 KGVIAEECPEAYKDIENVADICHDSGISLKVAKMKPMGVVKG 480
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L +F ++P G+GSKG I + +++ LE G+ W++ E Y W D +H EE+G+M
Sbjct: 116 LKELLSEIFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWAVEEEYGWERDIKHIEEHGKM 175
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADP+ VS AKKRGLPQ+
Sbjct: 176 KEADPTLVSDNAKKRGLPQL 195
>gi|327400874|ref|YP_004341713.1| hypothetical protein Arcve_0987 [Archaeoglobus veneficus SNP6]
gi|327316382|gb|AEA46998.1| protein of unknown function UPF0027 [Archaeoglobus veneficus SNP6]
Length = 480
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 141/282 (50%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+IYD+ AA MG+E+ G V VMIH GSRG GHQV TD L +++A+K+
Sbjct: 200 SGNHFLEVQYVDKIYDEEAAKVMGLEE-GMVTVMIHCGSRGLGHQVCTDFLEVLDRAVKK 258
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA I S + + A + + + H + + F K F + DDL
Sbjct: 259 YGIRLPDRQLACAPIKSREGQDYFGGMAASANYAWCNRQIITHWVRETFEKIFGMSEDDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH+VDGK+K + VHRKG+TRAF P IP Y+ GQPVLI G
Sbjct: 319 EMRLVYDVAHNIAKFEEHLVDGKKKKVCVHRKGATRAFGPGCKEIPEHYRDIGQPVLIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTEK M+E+FGSTCHG+GR +SRA ++R L V + LE +GI +R
Sbjct: 379 SMGTPSYVLIGTEKAMEESFGSTCHGSGRVMSRAAAKRKLRGSAVRSNLEKRGIYVRATQ 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ EEAPE+YK DVV+ H G+S+ +L P+ V KG
Sbjct: 439 GALLAEEAPEAYKRSDDVVEVVHKAGLSRLVARLLPLGVAKG 480
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ ++L ++F +P GVGS+G + ++ ++L+E +G W++ GY W ED ++CEE+
Sbjct: 113 RPKIKQLIDALFVAVPSGVGSEGRLRVSDKELDEIFVVGAKWAIENGYGWKEDLDNCEEH 172
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G + P VS +A+ RG PQ+
Sbjct: 173 GALAGGRPEVVSRKARSRGKPQL 195
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
++L ++F +P GVGS+G + ++ ++L+E +G W++ GY W ED ++ E
Sbjct: 117 KQLIDALFVAVPSGVGSEGRLRVSDKELDEIFVVGAKWAIENGYGWKEDLDNCE 170
>gi|147669386|ref|YP_001214204.1| hypothetical protein DehaBAV1_0742 [Dehalococcoides sp. BAV1]
gi|146270334|gb|ABQ17326.1| protein of unknown function UPF0027 [Dehalococcoides sp. BAV1]
Length = 486
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/282 (49%), Positives = 181/282 (64%), Gaps = 6/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDEI+D A+ G++ +GQV +IH+GSRG GHQV TD + + +A+K+
Sbjct: 205 SGNHFLEVQVVDEIFDPEVAAVFGVQALGQVLFLIHTGSRGLGHQVCTDYVQLLNEAVKK 264
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA + S+ + + + H DAF K F DL
Sbjct: 265 YGINLPDRQLACAPLKSDDGQNYLAAMACAANYAWANRQCITHWARDAFMKVFEKGRRDL 324
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M IYDV+HNIAK EEHMVDGK + + VHRKG+TR+FP HP IP Y+ GQPV+I G
Sbjct: 325 GMDQIYDVAHNIAKIEEHMVDGKVQNVCVHRKGATRSFPAGHPEIPAVYRKVGQPVIIPG 384
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYV GTE M+ETFGSTCHGAGR LSR +++ ++L+ L SQGISIRV
Sbjct: 385 DMGRYSYVAVGTETAMRETFGSTCHGAGRILSRGAAKKTTSGTQLLDTLRSQGISIRVGD 444
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEA E+YK+V DVV+ H GI++ FK RP+ VIKG
Sbjct: 445 IGSLAEEASEAYKDVADVVEVTHKAGIARNIFKTRPLGVIKG 486
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +F I GVGS G I ++ D++ + G W+L +G
Sbjct: 108 LRTNLSVEEVQPKIDELLNELFSKISSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGE 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED + EE G + A+P KVS +AK RG Q+
Sbjct: 168 AEDIKLTEESGSLSGANPDKVSNKAKTRGASQL 200
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
++QIANVA LPGIVGRS+ +PD+H
Sbjct: 49 IEQIANVAFLPGIVGRSMAMPDIH 72
>gi|150402561|ref|YP_001329855.1| hypothetical protein MmarC7_0637 [Methanococcus maripaludis C7]
gi|150033591|gb|ABR65704.1| protein of unknown function UPF0027 [Methanococcus maripaludis C7]
Length = 480
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 140/282 (49%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ VDEI+D+ AA G+ QV +MIH+GSRG GHQ+ D L ME A K+
Sbjct: 200 SGNHFLEIQYVDEIFDEVAAKTFGVSP-EQVVLMIHTGSRGLGHQICADYLRYMENAAKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DRQLACA INS + + + K + T L H I ++F F T+ +DL
Sbjct: 259 YNIKLPDRQLACAPINSEEGQKYFKAMSCGANYAWTNRQLITHWIRESFESVFKTSAEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M +IYDV+HNIAK E+H+VDG K ++VHRKG+TRAF P H IP DY GQPV+I G
Sbjct: 319 EMDIIYDVAHNIAKKEQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYANIGQPVIIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GT+K M+ETFGST HGAGRALSR K+ + EV L+ +GI + S
Sbjct: 379 DMGTASYLMHGTQKAMEETFGSTAHGAGRALSRVKALKLYTGAEVQEALQKRGILVMADS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EE PE+YK++ +V + CH GIS K K++P+ V+KG
Sbjct: 439 KGVIAEECPEAYKDIENVAEICHDSGISLKVAKMKPMGVVKG 480
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L +F ++P G+GSKG I + +++ LE G+ W++ EGY W D H EE+G+M
Sbjct: 116 LKELLAEIFKNVPSGLGSKGKIRITKDEIDNVLEEGVSWAVEEGYGWDRDINHIEEHGKM 175
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADP+ VS AKKRGLPQ+
Sbjct: 176 KEADPTLVSDNAKKRGLPQL 195
>gi|296242535|ref|YP_003650022.1| hypothetical protein Tagg_0797 [Thermosphaera aggregans DSM 11486]
gi|296095119|gb|ADG91070.1| protein of unknown function UPF0027 [Thermosphaera aggregans DSM
11486]
Length = 482
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 192/282 (68%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VDEIYD AA +GI VGQV +MIH+GSRG GHQVA+D LV ME+AM++
Sbjct: 202 AGNHFLEIQVVDEIYDPEAAKVLGITRVGQVTLMIHTGSRGLGHQVASDYLVTMERAMRK 261
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LA NS + + + K T + H + ++F + F P+DL
Sbjct: 262 YGIQVPDRELAAVPFNSPEGQDYFKAMAAAANFAWTNRQIITHWVRESFKQVFKKPPEDL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EEH+V+G++ ++VHRKG+TRAFPP HP IP DY+ GQPVLI G
Sbjct: 322 GLEIIYDVAHNIAKKEEHVVNGEKYRVVVHRKGATRAFPPGHPDIPGDYRSIGQPVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT G + T+ S HGAGR LSR ++ R+ + + +L +G+ ++ A+
Sbjct: 382 SMGTASYILVGTVNGAR-TWYSAPHGAGRWLSRGEAIRSYSPERITEELARKGVVLKAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++ EEAP +YK+V VV T H VGI+K ++RP+ V+KG
Sbjct: 441 KRVISEEAPGAYKDVDKVVLTAHKVGIAKMVVRMRPIGVVKG 482
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L +++F ++P GVGS G + ++ DLEE L G+ W++ G+ W D EH EE
Sbjct: 115 RPRLKELVEALFRNVPSGVGSTGHLRLSFSDLEEVLNHGVKWAVEHGFGWERDMEHIEEK 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G M +AD SKVS AK+RG Q+
Sbjct: 175 GSMKDADASKVSRVAKQRGHEQL 197
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L +++F ++P GVGS G + ++ DLEE L G+ W++ G+ W D EH E
Sbjct: 119 KELVEALFRNVPSGVGSTGHLRLSFSDLEEVLNHGVKWAVEHGFGWERDMEHIE 172
>gi|167387459|ref|XP_001738172.1| hypothetical protein [Entamoeba dispar SAW760]
gi|327488453|sp|B0EIW5.1|RTCB2_ENTDS RecName: Full=tRNA-splicing ligase RtcB homolog 2
gi|165898749|gb|EDR25533.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 524
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 197/301 (65%), Gaps = 14/301 (4%)
Query: 121 MIHSGSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
++ +RG G +Q+ T +GNHY EIQ VDEI D AA +MGI +GQ+C+MIH GSRG
Sbjct: 228 LVSQKARGRGRNQLGTLGSGNHYLEIQRVDEIMDMEAAKQMGISHIGQICIMIHCGSRGL 287
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD-------LD 230
GHQV D + + + + N D QL S+ + + K N + +
Sbjct: 288 GHQVCQDFV---DLCVNQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAANYAFANRGMIS 344
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
HV F + F +P DLDMH++YDV HNIAK E H++DG + +VHRKG+TRAF P
Sbjct: 345 YHV-RCTFEQVFKKSPKDLDMHLVYDVCHNIAKEEIHLIDGNEIKCIVHRKGATRAFAPL 403
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
+P+IP Y+ GQP +IGG+MGTCSY+L GT++GM++TFGSTCHGAGR +SR K+ +++
Sbjct: 404 NPVIPDAYKPIGQPAIIGGSMGTCSYMLVGTQEGMKKTFGSTCHGAGRKISRVKAMKDIS 463
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ +++ +GI +R+ PKL EEA +YK+V +VV+TC + GISK FKL+P+ V+K
Sbjct: 464 SNSVVEEMKKKGIELRITDPKLAAEEADGAYKDVKEVVETCQSAGISKIVFKLKPLIVVK 523
Query: 411 G 411
G
Sbjct: 524 G 524
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H LA ++ +IP GVG+ + +++ E + G++W +++ W ED +CEE GR
Sbjct: 161 HLVELADALQKNIPSGVGTTSNQTLTEKEMNEIMNEGLEWLVKKDLAWKEDLVYCEENGR 220
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
++N+DP VS +A+ RG Q+
Sbjct: 221 IINSDPHLVSQKARGRGRNQL 241
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M + F ND L +L++ EL N +PG F V+Q ANVA LPG++ +S+ +PD H
Sbjct: 56 MKNDAEMFCNDDLFELLMNELLNE-QPG--ASFSSCVRQTANVATLPGVI-KSLAMPDAH 111
Query: 61 S 61
S
Sbjct: 112 S 112
>gi|440294508|gb|ELP87525.1| hypothetical protein EIN_098520 [Entamoeba invadens IP1]
Length = 524
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 197/308 (63%), Gaps = 12/308 (3%)
Query: 112 IEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 169
I D + + + SRG +Q+ T +GNHY E+Q VD IYDK AA +GI ++GQ+CVM
Sbjct: 221 IPDANPLLISQKAMSRG-QNQLGTLGSGNHYLEVQKVDHIYDKEAAQALGITEIGQICVM 279
Query: 170 IHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFN 223
+H GSRG GHQV D + + + ++ D+QL NS K + A F
Sbjct: 280 VHCGSRGLGHQVCQDFV---DTFLSKNTANPVDKQLTGVPFNSEDGKKYFSAMNAAANFA 336
Query: 224 TTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGS 283
+ I F++ F +P++LD+ ++YDV HNIAK E+H+V+G++ +VHRKG+
Sbjct: 337 FANRGFITYHIRQTFSEVFKKSPEELDLGIVYDVCHNIAKLEKHVVNGEEVECVVHRKGA 396
Query: 284 TRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA 343
TRAFPPH P +P Y+ GQP +IGG+MGT SYVL GT+ GM+++FGSTCHGAGR LSR
Sbjct: 397 TRAFPPHRPELPEKYKEIGQPAIIGGSMGTSSYVLVGTQSGMEKSFGSTCHGAGRKLSRV 456
Query: 344 KSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ +++ V+ ++E +GI +R+ PKL EE E+YK+VT VV+TC GISK +L
Sbjct: 457 GAMKSVSSDNVVQEMEKKGIVLRITDPKLAAEECDEAYKDVTQVVETCQEAGISKIVLRL 516
Query: 404 RPVAVIKG 411
+P+ V+KG
Sbjct: 517 KPIVVVKG 524
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H LA S+ +IP GVG+ + ++ ++L E + GM+W Y +D +CEE G+
Sbjct: 161 HKIELADSLQKNIPSGVGTTSSLRLSVKELREVMNDGMEWLATHNYARPDDFLYCEENGK 220
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ +A+P +S +A RG Q+
Sbjct: 221 IPDANPLLISQKAMSRGQNQL 241
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 7 FFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHS 61
F N L L+++EL N + G F VKQ ANVA LPG+V +S+ +PD HS
Sbjct: 63 MFCNTELFHLLMDELLNE-QEGT--PFSSCVKQTANVATLPGVV-KSLAMPDAHS 113
>gi|57234437|ref|YP_181550.1| hypothetical protein DET0823 [Dehalococcoides ethenogenes 195]
gi|57224885|gb|AAW39942.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
Length = 486
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/440 (38%), Positives = 237/440 (53%), Gaps = 67/440 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPD--------VHSVPSTQWLSDNTMRSSNI---------W 79
++QIANVA LPGIVG+S+ +PD + V +T+ +SD + +
Sbjct: 49 IEQIANVAFLPGIVGKSMAMPDIHWGYGFPIGGVAATR-ISDGVISPGGVGFDINCGTRL 107
Query: 80 KRSPLTL-----------------------GAGNHYAEIQIVDEIYDK---WAASK-MG- 111
R+ L++ G+GN +D + + WA K MG
Sbjct: 108 LRTNLSVREVQPKIDELLAELFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGE 167
Query: 112 ------IEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASK 157
E+ G + V + +RG Q+ T +GNH+ E+Q+V EI+D AS
Sbjct: 168 SEDISLTEECGSLSGANPDRVSPKAKTRG-SSQLGTLGSGNHFLEVQVVAEIFDPEVASV 226
Query: 158 MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK- 216
G+++ GQV +IH+GSRG GHQV TD + + + +++ I DRQLACA + S +
Sbjct: 227 FGVQETGQVLFLIHTGSRGLGHQVCTDYVQLLNETVRKYGINLPDRQLACAPLKSEDGQN 286
Query: 217 -----AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
A A + DAF K F DL M+ IYDV+HNIAK EEHMVDG
Sbjct: 287 YLAAMACASNYAWANRQCITQWARDAFMKVFEKGRQDLGMNQIYDVAHNIAKIEEHMVDG 346
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K + + VHRKG+TR+FP P IP Y+ GQPV+I G MG SYV GTE M+ETFGS
Sbjct: 347 KMQNVCVHRKGATRSFPAGRPEIPAIYRKVGQPVIIPGDMGRYSYVAVGTETAMKETFGS 406
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
TCHGAGR LSR+ +++ +++ L +QGIS+ + EEAPE+YK+V DVV+
Sbjct: 407 TCHGAGRMLSRSLAKKAASVPQLMENLRAQGISVMAGDIDSLAEEAPEAYKDVADVVEVT 466
Query: 392 HAVGISKKTFKLRPVAVIKG 411
H GI++ FK RP+ VIKG
Sbjct: 467 HKAGIARNIFKTRPLGVIKG 486
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +F IP GVG G I ++ D++ + G +W+L +G
Sbjct: 108 LRTNLSVREVQPKIDELLAELFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGE 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+ED EE G + A+P +VS +AK RG Q+
Sbjct: 168 SEDISLTEECGSLSGANPDRVSPKAKTRGSSQL 200
>gi|126465883|ref|YP_001040992.1| hypothetical protein Smar_0985 [Staphylothermus marinus F1]
gi|126014706|gb|ABN70084.1| protein of unknown function UPF0027 [Staphylothermus marinus F1]
Length = 483
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/282 (48%), Positives = 189/282 (67%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+IYD A MGI GQV +MIH+GSRG GHQVA+D L+ ME+AM++
Sbjct: 203 AGNHFLEIQVVDKIYDPEVAKAMGITHEGQVTIMIHTGSRGLGHQVASDYLLLMERAMRK 262
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+LA + + + + K T + MH ++F + F+ P+DL
Sbjct: 263 YGIRPPDRELASLPFKTPEAQDYFKAMAAAANFAWTNRQIIMHWTRESFKQVFHKDPEDL 322
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK EEH+VDGK+ ++VHRKG+TRAFPP HP IP DYQ GQPVLI G
Sbjct: 323 GMKLVYDVAHNIAKIEEHIVDGKKYKVVVHRKGATRAFPPGHPEIPKDYQSIGQPVLIPG 382
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT+KG++ T+ S HGAGR +SR + R + V+ +L +GI +R A+
Sbjct: 383 SMGTASYILVGTKKGVR-TWHSAPHGAGRWMSRGAAIRTYRPERVVEELSRKGIILRAAT 441
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++ EEAP +YK+V VV H VGI K +LRP+ V+KG
Sbjct: 442 RRVISEEAPGAYKDVDRVVLVAHKVGIGKLVVRLRPIGVVKG 483
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++F ++P GVG+ G + ++ L+E L G++W++ G+ W ED +H EE
Sbjct: 116 RPRLKELVNTLFRNVPSGVGATGKLRLSFDQLDEVLNRGVEWAIENGFGWPEDMDHIEEQ 175
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G AD SKVS RAK+RG Q+
Sbjct: 176 GSWKVADASKVSRRAKQRGHNQL 198
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F ++P GVG+ G + ++ L+E L G++W++ G+ W ED +H E
Sbjct: 120 KELVNTLFRNVPSGVGATGKLRLSFDQLDEVLNRGVEWAIENGFGWPEDMDHIE 173
>gi|218781771|ref|YP_002433089.1| hypothetical protein Dalk_3935 [Desulfatibacillum alkenivorans
AK-01]
gi|218763155|gb|ACL05621.1| protein of unknown function UPF0027 [Desulfatibacillum alkenivorans
AK-01]
Length = 477
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 169/439 (38%), Positives = 238/439 (54%), Gaps = 66/439 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH--------SVPSTQW--------------------- 67
+KQ+ANVA LPGIV S+ +PD+H V + W
Sbjct: 41 LKQVANVATLPGIVKASMAMPDIHWGYGFSIGGVAAFDWQDGVISPGGVGYDINCGVRLA 100
Query: 68 ---LSDNTMR------SSNIWKRSPLTLGAGN----HYAEIQIVDEIYDKWAASK-MG-- 111
L ++++ + +++ P +G+ + E + V E +WAAS+ +G
Sbjct: 101 ATSLDMDSLQPYLDKIADALYQGIPCGVGSTGFVKLNQKEAKRVLEQGSRWAASRGLGAD 160
Query: 112 --IEDVGQVCVMIHSGS---------RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKM 158
+E + M + S RG Q+ T +GNH+ EI +V+E+Y+ A
Sbjct: 161 SDLEHTEEYGCMDAADSEAVSERALQRGL-KQLGTLGSGNHFLEIGVVEEVYEPETAGVY 219
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK-- 216
G+ + GQV V +HSGSRG G+QV D L +M K K IE DRQL C+ INS K
Sbjct: 220 GLAE-GQVTVFLHSGSRGLGYQVCDDYLARMTKKSKDLGIELPDRQLVCSWINSKMGKEY 278
Query: 217 ----AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 272
A A + + MH + K + P DL M +IYDV HNIAK E H+VDG
Sbjct: 279 YSAMACAANYAWANRQILMHQAEEVLLKTLSMGPRDLGMRLIYDVCHNIAKKETHVVDGV 338
Query: 273 QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGST 332
+ L VHRKG+TRAF P HP + Y+ GQPVL+ G MGTCSYVL GTEK M+ETFGST
Sbjct: 339 SRALCVHRKGATRAFAPGHPDVCSAYRKVGQPVLVPGDMGTCSYVLAGTEKAMEETFGST 398
Query: 333 CHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCH 392
CHGAGR +SR ++++ + + + +L +GI ++ + EE PE+YKNV++VV+ H
Sbjct: 399 CHGAGRVMSRTQAKKAVKGRSIHRELLDKGIRVKWTGRTTLAEEVPEAYKNVSEVVEVVH 458
Query: 393 AVGISKKTFKLRPVAVIKG 411
GIS+K +LRPV V+KG
Sbjct: 459 GAGISQKVARLRPVVVVKG 477
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
+ +++A +++ IP GVGS G + +N ++ + LE G W+ G D EH EEYG
Sbjct: 112 YLDKIADALYQGIPCGVGSTGFVKLNQKEAKRVLEQGSRWAASRGLGADSDLEHTEEYGC 171
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
M AD VS RA +RGL Q+
Sbjct: 172 MDAADSEAVSERALQRGLKQL 192
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 413 YLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
YL+ ++A +++ IP GVGS G + +N ++ + LE G W+ G D EH E
Sbjct: 112 YLD-KIADALYQGIPCGVGSTGFVKLNQKEAKRVLEQGSRWAASRGLGADSDLEHTE 167
>gi|70942886|ref|XP_741555.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56520010|emb|CAH79229.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 427
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 218/399 (54%), Gaps = 70/399 (17%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
MNVEG +VN+ L KL+++E N + FLP V Q
Sbjct: 32 MNVEGNMYVNERL-KLLIDEEINMYQLNQRSTFLPAVIQIANVSTLPGIVKASIALPDVH 90
Query: 40 ------IANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNI----W 79
I NVAA PG VG + V + + + +D + + +
Sbjct: 91 AGYGFSIGNVAAFDMNNEKAVISPGGVGFDINC-GVRLIRTNLFYNDIKDKQEELAQLLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------VM 121
P+ +G+ G +D+ + W K+ ED G+ V
Sbjct: 150 NHIPVGVGSQGFILCNQNNLDDALNLGMDWSVKEGYSWIEDKLNCEDNGRSLYANSDYVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG GH
Sbjct: 210 VRAKKRGIT-QMGTLGAGNHYAEIQIVDEIYDKRSAKLMGIEKKNQVCIMIHSGSRGLGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHV 233
Q+ATDAL++MEK M + I D+QLAC I+S + + + K F +
Sbjct: 269 QIATDALIEMEKIMSKYKINVIDKQLACTPIHSPEGQNYLKAMGAACNFAWINRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLVHRKGSTRAFPP HPL
Sbjct: 329 ARQAFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLVHRKGSTRAFPPFHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGST 332
+P+DYQ GQP+LIGGTMGT SYVLTGTEK M+ TFGST
Sbjct: 389 VPLDYQYCGQPILIGGTMGTYSYVLTGTEKAMESTFGST 427
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W
Sbjct: 128 IRTNLFYNDIKDKQEELAQLLFNHIPVGVGSQGFILCNQNNLDDALNLGMDWSVKEGYSW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L A+ VS+RAKKRG+ Q+
Sbjct: 188 IEDKLNCEDNGRSLYANSDYVSVRAKKRGITQM 220
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK + E +S+
Sbjct: 142 EELAQLLFNHIPVGVGSQGFILCNQNNLDDALNLGMDWSVKEGYSWIEDKLNCEDNGRSL 201
Query: 476 F---DHIPVGVGSKGIIPM 491
+ D++ V +GI M
Sbjct: 202 YANSDYVSVRAKKRGITQM 220
>gi|336122113|ref|YP_004576888.1| hypothetical protein Metok_1141 [Methanothermococcus okinawensis
IH1]
gi|334856634|gb|AEH07110.1| protein of unknown function UPF0027 [Methanothermococcus
okinawensis IH1]
Length = 480
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 251/478 (52%), Gaps = 87/478 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNV G ++ND L E + N ++Q+ANVA LPGI S+ +PD H
Sbjct: 23 MNVPGRVYLNDEL----FENMENDV-----------LEQVANVACLPGIQKYSLAMPDCH 67
Query: 61 ---------------------------------SVPSTQWLSDNTMRS-----SNIWKRS 82
+ T ++ + ++K
Sbjct: 68 YGYGFCIGGVAAFDEKTGVISPGGVGFDINCGIRLVKTNLTKEDVQPKIKELVNKLFKNV 127
Query: 83 PLTLGAGNHYAEIQI----VDEIYDK-----------WAASKMGIEDVGQV------CVM 121
P LG+ +I+I +DE+ ++ W K IE+ G V V
Sbjct: 128 PSGLGSK---GKIRITKNEIDEVLEEGVNWAIDNNYGWKVDKKYIEENGCVKEADASLVS 184
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
++ RG Q+ + +GNH+ EIQ VD+I+D+ AA G+E QV VMIH+GSRG GH
Sbjct: 185 DNAKKRGL-PQLGSLGSGNHFLEIQYVDKIFDEEAAKVYGVEK-NQVLVMIHTGSRGLGH 242
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHV 233
Q+ +D L MEKA K+ NI DRQLACA I S + + K N T L H
Sbjct: 243 QICSDYLRYMEKASKKYNIHLPDRQLACAPITSEEGIRYFKAMNCGANYAWTNRQLITHW 302
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
+ ++F + F T +DL+M+++YDV+HNIAK E+H ++GK K ++VHRKG+TR+F P
Sbjct: 303 VRESFEEVFKTPAEDLEMNILYDVAHNIAKKEKHKINGKLKNVIVHRKGATRSFGPGCDG 362
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IP DY GQPV+I G MGT SY++ GT+ M+ETFGST HGAGR LSRA + + D
Sbjct: 363 IPEDYNKIGQPVIIPGDMGTASYLMHGTDIAMEETFGSTAHGAGRTLSRAGALKLYDSNS 422
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V +LE +GI + S ++ EE PE+YKN+ V D H GIS K +++P+ V+KG
Sbjct: 423 VKAELERKGIYVMADSKGVIAEECPEAYKNIELVADVAHNSGISLKVSRMKPMGVVKG 480
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L +F ++P G+GSKG I + +++E LE G++W++ Y W DK++ EE G +
Sbjct: 116 IKELVNKLFKNVPSGLGSKGKIRITKNEIDEVLEEGVNWAIDNNYGWKVDKKYIEENGCV 175
Query: 528 LNADPSKVSMRAKKRGLPQV 547
AD S VS AKKRGLPQ+
Sbjct: 176 KEADASLVSDNAKKRGLPQL 195
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L +F ++P G+GSKG I + +++E LE G++W++ Y W DK++ E
Sbjct: 117 KELVNKLFKNVPSGLGSKGKIRITKNEIDEVLEEGVNWAIDNNYGWKVDKKYIE 170
>gi|289192965|ref|YP_003458906.1| protein of unknown function UPF0027 [Methanocaldococcus sp.
FS406-22]
gi|288939415|gb|ADC70170.1| protein of unknown function UPF0027 [Methanocaldococcus sp.
FS406-22]
Length = 969
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 135/282 (47%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++++D+ AA GIE+ QV VM+H+GSRG GHQ+ TD L MEKA K
Sbjct: 689 SGNHFLEVQYVEKVFDEEAAEVFGIEE-NQVVVMVHTGSRGLGHQICTDYLRTMEKAAKN 747
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA S + +++ K + + H + ++F + F +DL
Sbjct: 748 YGIKLPDRQLACAPFESEEGQSYFKAMCCGANYAWANRQMITHWVRESFEEVFKIHAEDL 807
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH++DG++ ++VHRKG+TRAFPP H IP +Y GQPV+I G
Sbjct: 808 EMGIVYDVAHNIAKKEEHIIDGRKVKVIVHRKGATRAFPPKHEAIPKEYWSVGQPVIIPG 867
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTE M+ETFGST HGAGR LSRAK+ + +E+ +L GI S
Sbjct: 868 DMGTASYLMKGTEIAMRETFGSTAHGAGRKLSRAKALKLWKGKEIQKRLAEMGIIAMSDS 927
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAPE+YK+V V DTCH GIS K ++RP+ VIKG
Sbjct: 928 KAVMAEEAPEAYKSVDLVADTCHKAGISLKVARMRPLGVIKG 969
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 54/77 (70%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E EE+G + +A
Sbjct: 608 LVKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIEEHGCLKDA 667
Query: 531 DPSKVSMRAKKRGLPQV 547
D S VS +AK+RG Q+
Sbjct: 668 DASYVSDKAKERGRVQL 684
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E E
Sbjct: 608 LVKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIE 659
>gi|270308129|ref|YP_003330187.1| hypothetical protein DhcVS_727 [Dehalococcoides sp. VS]
gi|270154021|gb|ACZ61859.1| hypothetical protein DhcVS_727 [Dehalococcoides sp. VS]
Length = 486
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 244/476 (51%), Gaps = 81/476 (17%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G+ + ++H+ + EE ++QIANVA LPGI G+S+ +PD+H
Sbjct: 27 MKVPGLVYASEHMLNQIWEE--------------HAIEQIANVAFLPGITGKSMAMPDIH 72
Query: 61 --------SVPSTQWLSDNTMRSSNI-------------------------------WKR 81
V +T+ +SD + + + +
Sbjct: 73 WGYGFPIGGVAATR-ISDGVISPGGVGFDINCGTRLLRTNLCVEEVQPKINELLNGLFDK 131
Query: 82 SPLTLG-AGNHYAEIQIVDEIYDK---WAASK-MG-------IEDVGQVC------VMIH 123
P +G GN + +D + + WA K MG E+ G + V I
Sbjct: 132 IPSGVGTGGNIKLSLTDIDNVMTRGGSWALEKGMGEAEDVKLTEESGSLSGANPDEVSIK 191
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+ +RG Q+ T +GNH+ E+Q+VDEI+D A G++ GQV +IH+GSRG GHQV
Sbjct: 192 AKTRG-SSQLGTLGSGNHFLEVQVVDEIFDTEVADVFGVQQTGQVLFLIHTGSRGLGHQV 250
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD + + + K+ I DRQLACA + S + + + +
Sbjct: 251 CTDYVQLLNEMSKKYGINLPDRQLACAPLKSEDGQDYLAAMACAANYAWANRQCITQWVR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F K F P DL M IYDV+HNIAK EEH VDGK + + VHRKG+TR+FP P IP
Sbjct: 311 EVFMKIFEKGPRDLGMSQIYDVAHNIAKIEEHTVDGKIQNVCVHRKGATRSFPAGRPEIP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPV+I MG SYV GTE M ETFGSTCHGAGR LS+ +++ +++
Sbjct: 371 AVYRKVGQPVIIPDDMGRYSYVAVGTETAMHETFGSTCHGAGRILSQGAAKKTASGAQLI 430
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ L+ QGISIRV + EEA E+YK+V DVV+ H GI++ FK RP+ VIKG
Sbjct: 431 DTLKIQGISIRVGDIGSLAEEASEAYKDVADVVEVTHKAGIARNIFKTRPLGVIKG 486
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + L +FD IP GVG+ G I ++ D++ + G W+L +G
Sbjct: 108 LRTNLCVEEVQPKINELLNGLFDKIPSGVGTGGNIKLSLTDIDNVMTRGGSWALEKGMGE 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED + EE G + A+P +VS++AK RG Q+
Sbjct: 168 AEDVKLTEESGSLSGANPDEVSIKAKTRGSSQL 200
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAED 464
+NE L +FD IP GVG+ G I ++ D++ + G W+L +G AED
Sbjct: 121 INE-LLNGLFDKIPSGVGTGGNIKLSLTDIDNVMTRGGSWALEKGMGEAED 170
>gi|261403672|ref|YP_003247896.1| hypothetical protein Metvu_1561 [Methanocaldococcus vulcanius M7]
gi|261370665|gb|ACX73414.1| protein of unknown function UPF0027 [Methanocaldococcus vulcanius
M7]
Length = 974
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 135/282 (47%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++++D+ AA GIE+ QV V++H+GSRG GHQ+ TD L MEKA K
Sbjct: 694 SGNHFLEVQYVEKVFDEEAAEIYGIEE-NQVVVLVHTGSRGLGHQICTDYLRIMEKAAKN 752
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA S + +++ K + + H + ++F + F +DL
Sbjct: 753 YGIKLPDRQLACAPFESEEGQSYFKAMCCGANYAWANRQMITHWVRESFEEVFKIHAEDL 812
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH +DG++ ++VHRKG+TRAFPP HP IP +Y+ GQPV+I G
Sbjct: 813 EMSIVYDVAHNIAKKEEHTIDGRKVKVIVHRKGATRAFPPKHPQIPKEYKDVGQPVIIPG 872
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTE M+ETFGST HGAGR LSRAK+ + +E+ +L GI S
Sbjct: 873 DMGTASYLMRGTEIAMKETFGSTAHGAGRKLSRAKALKLWKGKEIQKRLAEMGIIAMSDS 932
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAPE+YK+V V DTCH GIS K ++RP+ VIKG
Sbjct: 933 KAVMAEEAPEAYKSVDLVADTCHRAGISLKVARMRPLGVIKG 974
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E EE G M +A
Sbjct: 613 LIKTLFKNVPSGLGSKGILKFSKGVMDDVLEEGVRWAVKEGYGWKEDLEFIEENGCMEDA 672
Query: 531 DPSKVSMRAKKRGLPQV 547
D S VS +AK+RG Q+
Sbjct: 673 DASYVSDKAKERGRVQL 689
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E E
Sbjct: 613 LIKTLFKNVPSGLGSKGILKFSKGVMDDVLEEGVRWAVKEGYGWKEDLEFIE 664
>gi|15668863|ref|NP_247666.1| hypothetical protein MJ_0682 [Methanocaldococcus jannaschii DSM
2661]
gi|2501617|sp|Q58095.1|RTCB_METJA RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Mja hyp2 intein
gi|1591397|gb|AAB98677.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 968
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++++D+ AA GIE+ QV V++H+GSRG GHQ+ TD L MEKA K
Sbjct: 688 SGNHFLEVQYVEKVFDEEAAEIYGIEE-NQVVVLVHTGSRGLGHQICTDYLRIMEKAAKN 746
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA S + +++ K + + H + ++F + F +DL
Sbjct: 747 YGIKLPDRQLACAPFESEEGQSYFKAMCCGANYAWANRQMITHWVRESFEEVFKIHAEDL 806
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M+++YDV+HNIAK EEH++DG++ ++VHRKG+TRAFPP H IP +Y GQPV+I G
Sbjct: 807 EMNIVYDVAHNIAKKEEHIIDGRKVKVIVHRKGATRAFPPKHEAIPKEYWSVGQPVIIPG 866
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTE M+ETFGST HGAGR LSRAK+ + +E+ +L GI S
Sbjct: 867 DMGTASYLMRGTEIAMKETFGSTAHGAGRKLSRAKALKLWKGKEIQRRLAEMGIVAMSDS 926
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAPE+YK+V V DTCH GIS K ++RP+ VIKG
Sbjct: 927 KAVMAEEAPEAYKSVDLVADTCHKAGISLKVARMRPLGVIKG 968
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 57/85 (67%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E E
Sbjct: 599 EVQSKIKELIKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIE 658
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E+G + +AD S VS +AK+RG Q+
Sbjct: 659 EHGCLKDADASYVSDKAKERGRVQL 683
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E E
Sbjct: 607 LIKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIE 658
>gi|352682232|ref|YP_004892756.1| RtcB family protein [Thermoproteus tenax Kra 1]
gi|350275031|emb|CCC81678.1| RtcB family protein, predicted to be implicated in RNA processing
[Thermoproteus tenax Kra 1]
Length = 483
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/284 (47%), Positives = 190/284 (66%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+I+D+ AA MGIE GQ+ VMIH+GSRGFGHQVATD L+ ME+ M+
Sbjct: 201 SGNHFLEIQVVDKIFDERAAKTMGIEQEGQILVMIHTGSRGFGHQVATDYLMIMERKMRE 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + + + K T + MH + +AF + F + + +
Sbjct: 261 WGLRLPDRELAAAPLKDKVAEDYLKAMAAAANFAWTNRQIIMHWVREAFRRVFGSV-EKV 319
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK E+H+VD G K + VHRKG+TRAFPP HP IP Y+ GQPVLI
Sbjct: 320 GLEIVYDVAHNIAKLEDHVVDDKGTVKRVWVHRKGATRAFPPGHPEIPAKYREIGQPVLI 379
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG+ S++L GT + M+ TFG+ HGAGR LSR + R+ Q+V +LE +GI +R
Sbjct: 380 PGSMGSASWILVGTHEAMRITFGTAPHGAGRMLSREAAIRSFPPQKVRTELEKRGIIVRS 439
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAPE+YKNV VV+T H VG +KK + RP+ V+KG
Sbjct: 440 AETEVISEEAPEAYKNVDLVVETAHQVGFAKKVVRQRPIGVVKG 483
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + + L +F +P GVG G + ++ + ++A+ G++W++ +G+ W
Sbjct: 104 LRTNLTEKDVRPKLKELVDEIFRLVPPGVGETGHLKLSTSEFDKAITEGVEWAISKGFGW 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDKE E+ G AD SKVS RAK RG Q+
Sbjct: 164 PEDKEFIEQKGSWDLADASKVSDRAKNRGKDQL 196
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
+ L +F +P GVG G + ++ + ++A+ G++W++ +G+ W EDKE E+
Sbjct: 118 KELVDEIFRLVPPGVGETGHLKLSTSEFDKAITEGVEWAISKGFGWPEDKEFIEQ 172
>gi|73668781|ref|YP_304796.1| hypothetical protein Mbar_A1252 [Methanosarcina barkeri str.
Fusaro]
gi|72395943|gb|AAZ70216.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 500
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+IYD+ AS G+++ GQV VMIH GSRG GHQ+ TD L ++ +A+K
Sbjct: 220 SGNHFLEVQYVDKIYDQEIASTFGLQE-GQVTVMIHCGSRGAGHQICTDHLKELSQAVKN 278
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
IE D+QLACA S + + + K + + H ++F F DDL
Sbjct: 279 YKIEIPDKQLACAPAQSREAQNYFKAMLCAANYAWANRQIITHWTRESFENVFGRDADDL 338
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK E+H+VDGK+K + VHRKG+TRAFPP HP +P Y+ GQPVLI G
Sbjct: 339 GMDLLYDVAHNVAKLEKHLVDGKKKEVYVHRKGATRAFPPGHPEVPAVYRDVGQPVLIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G E+ M +FGS CHGAGR +SRA +++ Q + LE++GI++R
Sbjct: 399 SMGTPSYILCGLEEAMNVSFGSACHGAGRVMSRAHAKKEFRGQSIKENLEARGITVRATH 458
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P ++ EEAP+ YK+ ++VV+ H +GI++K ++ P+ V KG
Sbjct: 459 PSVIAEEAPDVYKSSSEVVNVVHELGIARKVARVLPLGVTKG 500
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 16/152 (10%)
Query: 406 VAVIKGIYLNERLAQSMFD-HIPVGVGSKGIIPMNARDLEEAL----EMGMDWS-----L 455
VA + GI ++ + +M D H+ G G+ A D+EE + +G D + +
Sbjct: 70 VATLPGI---QKYSMAMPDAHLGYGFAIGGVA---AFDVEEGIISPGGVGFDINCGVRLI 123
Query: 456 REGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWA 515
R E + +RL +F +IP GVGSK I + ++L+ A G +W++ GY
Sbjct: 124 RTNLQKEEVVPNIKRLTDELFSNIPAGVGSKSRIRASDQELDSAFLEGANWAVEAGYGVE 183
Query: 516 EDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D +HCE G M ADP++VS +A+KRG PQ+
Sbjct: 184 ADVKHCEANGYMEGADPAQVSAKARKRGKPQL 215
>gi|298675939|ref|YP_003727689.1| hypothetical protein Metev_2065 [Methanohalobium evestigatum
Z-7303]
gi|298288927|gb|ADI74893.1| protein of unknown function UPF0027 [Methanohalobium evestigatum
Z-7303]
Length = 487
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 194/282 (68%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+IYD AS G+E+ GQV V IH GSRG GHQ+ +D L ++ +A+K+
Sbjct: 210 SGNHFLEVQYVDKIYDDVIASDFGLEE-GQVTVSIHCGSRGAGHQICSDHLRELTQAVKK 268
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ D+QLACA NS + + + K + + H + F F D+
Sbjct: 269 YGIQLPDKQLACAPANSREAQNYFKAMACAANYAWANRQVINHWTREVFENIFGK---DI 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM+++YDV+HN+AK EEH ++G++K + VHRKG+TRAFPP HP + DYQ +GQPVLI G
Sbjct: 326 DMNLVYDVAHNVAKLEEHTINGEKKQVYVHRKGATRAFPPEHPELSDDYQQSGQPVLIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S+VL GT+ M +FGS CHG+GR +SR +++ L +E+ +L S+GI+++VA+
Sbjct: 386 SMGTHSFVLHGTKDSMDISFGSACHGSGRLMSRKHAKKELSGEEIQKELASKGITVKVAN 445
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P+++ EEAPE+YK+ ++VVD H VGI++K +L PV VIKG
Sbjct: 446 PRMISEEAPEAYKSSSEVVDVVHDVGIARKVARLSPVGVIKG 487
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + H RL ++F+ IP G+GSK + ++ +L++ G W++ GY
Sbjct: 113 LRTNLKIEDIRPHMNRLVNNLFNKIPSGLGSKSGLKVSDAELDDVFRHGAQWAVDNGYGV 172
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D EHCE G + ADPS+VS A+KRG PQ+
Sbjct: 173 KADVEHCEGNGLIKGADPSQVSKEARKRGRPQL 205
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
RL ++F+ IP G+GSK + ++ +L++ G W++ GY D EH E
Sbjct: 128 RLVNNLFNKIPSGLGSKSGLKVSDAELDDVFRHGAQWAVDNGYGVKADVEHCE 180
>gi|254167923|ref|ZP_04874772.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
gi|289596641|ref|YP_003483337.1| protein of unknown function UPF0027 [Aciduliprofundum boonei T469]
gi|197623214|gb|EDY35780.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
gi|289534428|gb|ADD08775.1| protein of unknown function UPF0027 [Aciduliprofundum boonei T469]
Length = 484
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 248/480 (51%), Gaps = 88/480 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V GV + + H M+E+++ P +Q+ANVA LPGIV S+ +PD+H
Sbjct: 24 MRVPGVIYASQH----MIEQIKRDNAP----------EQVANVATLPGIVKASMAMPDIH 69
Query: 61 --------------------------------------------SVPSTQWLSDNTMRS- 75
P + L DN +
Sbjct: 70 WGYGFPIGGVAAFDAEEGIISPGGVGYDINCGVRLLTTNLDEKDVRPKLKELVDNIFMNV 129
Query: 76 -SNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASK--------MGIEDVGQVCVMIHSG- 125
S + ++ L L ++ E+ V + KWA +E+ G + H+
Sbjct: 130 PSGVGEKGKLRL----NFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSIKFADHTKV 185
Query: 126 -----SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
RG Q+ T AGNH+ E+Q V++I+ A K GI GQ+ VMIH+GSRG G
Sbjct: 186 SDKAKKRG-APQLGTLGAGNHFLEVQRVEKIFLPEIAKKFGITHEGQITVMIHTGSRGLG 244
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMH 232
HQVA+D + ME+A ++ I+ D QLACA + S + + + A F T L H
Sbjct: 245 HQVASDYIRVMEQAARKYGIKLVDPQLACAPVKSKEAEDYFAAMSAAANFGFTNRQLITH 304
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ ++F K F P+DL MH++Y V+HNIAK EEH+VDGK+ + VHRKG+TRAF
Sbjct: 305 WVRESFGKVFGEDPEDLGMHLVYGVAHNIAKLEEHIVDGKRMKVYVHRKGATRAFAAGRE 364
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
+ Y+ GQPVLI G MGT SYVL GT+K M+ETFGSTCHGAGR +SR + R +
Sbjct: 365 ELSQLYRDVGQPVLIPGDMGTSSYVLVGTQKAMEETFGSTCHGAGRVMSRHAALRKFRGE 424
Query: 353 EVLNKL-ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
E+ +L E + I +R AS ++ EEAP++YK+V +VV GIS+ K+ P+ V+KG
Sbjct: 425 EIKRELWEKKHIYVRSASNRVAAEEAPDAYKDVNEVVRAVEGAGISRIVAKMVPLGVVKG 484
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F ++P GVG KG + +N +L + L+ G W++ GY W ED E EE G +
Sbjct: 118 LKELVDNIFMNVPSGVGEKGKLRLNFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSI 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
AD +KVS +AKKRG PQ+
Sbjct: 178 KFADHTKVSDKAKKRGAPQL 197
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
+ L ++F ++P GVG KG + +N +L + L+ G W++ GY W ED E E
Sbjct: 119 KELVDNIFMNVPSGVGEKGKLRLNFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSIK 178
Query: 476 F-DHIPV 481
F DH V
Sbjct: 179 FADHTKV 185
>gi|297619486|ref|YP_003707591.1| hypothetical protein Mvol_0961 [Methanococcus voltae A3]
gi|297378463|gb|ADI36618.1| protein of unknown function UPF0027 [Methanococcus voltae A3]
Length = 480
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 189/282 (67%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ VDEI+++ A G+E Q+ +M+H+GSRG GHQ+ D L +ME A K+
Sbjct: 200 SGNHFLEIQYVDEIFNEETAKVYGVEK-DQLMIMVHTGSRGLGHQICADYLRRMENATKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NI+ DRQLACA INS + +A+ K + + L H + +AF K F + +++
Sbjct: 259 YNIKIPDRQLACAPINSEEGEAYFKAMSCGANYAWANRQLITHWVREAFEKVFKNSYENM 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H+VDGK+K+++VHRKG+TRAF P+H IP Y+ GQPV+I G
Sbjct: 319 GMEIVYDVAHNIAKKETHIVDGKEKSVIVHRKGATRAFGPNHSEIPEIYRPVGQPVIIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY+L+GTE M++TFGST HGAGR LSR K+ + EV +LE +GI + S
Sbjct: 379 DMGTASYLLSGTELAMEKTFGSTAHGAGRTLSRVKALQMYKSSEVQERLEKEGILVMADS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EE PE+YK++ V + C GI+ K +L+P+ V+KG
Sbjct: 439 KGVIAEECPEAYKDIEAVANVCDNSGIALKVSRLKPLGVVKG 480
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
EDK + L +F ++P G+GSKG I ++ ++ LE G++W+++EGY +D E E
Sbjct: 111 EDKTKLKELLNEIFTNVPSGLGSKGKIRLDNNQIDTVLEEGVEWAIKEGYGTKKDLERIE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM AD S VS AKKRG PQ+
Sbjct: 171 ENGRMKEADASFVSESAKKRGKPQL 195
>gi|389860621|ref|YP_006362861.1| hypothetical protein TCELL_0298 [Thermogladius cellulolyticus 1633]
gi|388525525|gb|AFK50723.1| hypothetical protein TCELL_0298 [Thermogladius cellulolyticus 1633]
Length = 482
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD IY+ A +G + VGQV VMIH+GSRG GHQVA+D L+ ME+AM+R
Sbjct: 202 AGNHFLEIQVVDHIYNPDIAKVLGFDHVGQVAVMIHTGSRGLGHQVASDYLIIMERAMRR 261
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+LA SN+ + + K T L H ++F + F P++L
Sbjct: 262 YGISVPDRELAAVPFKSNEGQDYFKAMAAAANFAWTNRQLITHWTRESFKEVFKKDPEEL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+H++YDV+HNIAK EEH+++ K+ ++VHRKG+TRAFPP HP +P Y+ GQPVLI G
Sbjct: 322 GLHIVYDVAHNIAKIEEHVINNKRYKVVVHRKGATRAFPPGHPDLPAKYRNIGQPVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G +G + T+ S HGAGR LSR ++ R+ V+N+L +GI++R A+
Sbjct: 382 SMGTASYILVGVPEGYR-TWYSAPHGAGRWLSRGEAIRSYSPDRVINELAKKGIAVRAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAPE+YK+V VV VGI+ +LRP+ V+KG
Sbjct: 441 KRVVSEEAPEAYKDVDRVVLVAQKVGIASPVVRLRPIGVVKG 482
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F ++P GVGS G I ++ R+L+E L G++W++ +G+ W ED E+ EE+G
Sbjct: 118 LKELVDALFRNVPSGVGSTGKIRLSTRELDEVLNRGVEWAVEKGFGWKEDMEYIEEHGSW 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
AD SKVS AK+RG Q+
Sbjct: 178 RMADSSKVSNVAKQRGHEQL 197
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F ++P GVGS G I ++ R+L+E L G++W++ +G+ W ED E+ E
Sbjct: 121 LVDALFRNVPSGVGSTGKIRLSTRELDEVLNRGVEWAVEKGFGWKEDMEYIE 172
>gi|320101388|ref|YP_004176980.1| hypothetical protein [Desulfurococcus mucosus DSM 2162]
gi|319753740|gb|ADV65498.1| protein of unknown function UPF0027 [Desulfurococcus mucosus DSM
2162]
Length = 482
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 139/312 (44%), Positives = 204/312 (65%), Gaps = 14/312 (4%)
Query: 109 KMGIEDVGQVCVMIHSGSRGFGH-QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQ 165
+M D G+V + ++ GH Q+ T AGNH+ EIQ+VDEIYD AA MGI +GQ
Sbjct: 176 RMKTADAGKVSKV----AKQRGHEQLGTLGAGNHFLEIQVVDEIYDPEAAKTMGITRIGQ 231
Query: 166 VCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTT 225
V +MIH+GSRG GHQVA+D L+ ME+AM++ I+ DR+LA S + + + K +
Sbjct: 232 VTLMIHTGSRGLGHQVASDYLMVMERAMRKYGIQVPDRELAALPFQSPEAQDYFKAMSAA 291
Query: 226 PD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 279
+ + H ++F + F P++L + +IYD++HNIAK EEH V+G++ ++VH
Sbjct: 292 ANFAWANRQIITHWTRESFKQVFKRDPEELGIEIIYDIAHNIAKIEEHTVNGEKHRVVVH 351
Query: 280 RKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRA 339
RKG+TRAFPP HP IP DYQ GQPVLI G+MGT SY+L GT G + F S HGAGR
Sbjct: 352 RKGATRAFPPGHPDIPGDYQSIGQPVLIPGSMGTASYILLGTANGARTWF-SAPHGAGRW 410
Query: 340 LSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKK 399
LSR + R+ ++V+++L +G+ ++ A+ +++ EEAP +YK+V VV H VGI++
Sbjct: 411 LSRGDAIRSYSPEKVVDELGRKGVVLKAATRRVISEEAPGAYKDVDRVVMVAHKVGIARP 470
Query: 400 TFKLRPVAVIKG 411
++RP+ V+KG
Sbjct: 471 VVRMRPIGVVKG 482
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + L ++F ++P GVGS G + + +L+E L G++W++ G+ W D EH EE
Sbjct: 115 KPRLKELVDALFRNVPSGVGSTGHLRLGFNELDEVLNRGVEWAVEAGFGWKRDIEHIEER 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM AD KVS AK+RG Q+
Sbjct: 175 GRMKTADAGKVSKVAKQRGHEQL 197
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F ++P GVGS G + + +L+E L G++W++ G+ W D EH E
Sbjct: 119 KELVDALFRNVPSGVGSTGHLRLGFNELDEVLNRGVEWAVEAGFGWKRDIEHIE 172
>gi|345302381|ref|YP_004824283.1| hypothetical protein Rhom172_0502 [Rhodothermus marinus
SG0.5JP17-172]
gi|345111614|gb|AEN72446.1| protein of unknown function UPF0027 [Rhodothermus marinus
SG0.5JP17-172]
Length = 988
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ V +I+D AA MG+ GQV V+IH+GSRGFG+Q+ D L M++A+ R
Sbjct: 708 SGNHFLEVGYVAQIFDDEAARVMGLFP-GQVTVIIHTGSRGFGYQICDDYLAVMDRALAR 766
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+I DRQLACA + S + + + F + H AFA+ +D+
Sbjct: 767 YHIRLPDRQLACAPLRSPEGQQYLAAMRCGINFAFANRQIIAHNTRKAFAEALGMREEDI 826
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +Y+V+HNIAK EEH +DG+++ + VHRKG+TRAFPP H IP Y+ GQPVLI G
Sbjct: 827 GLRTVYEVAHNIAKIEEHTIDGERRRVCVHRKGATRAFPPGHSQIPAAYRSIGQPVLIPG 886
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYVL GTE+ MQETFGSTCHGAGR LSR K+++ + V +L ++GI +R AS
Sbjct: 887 DMGRYSYVLVGTEQAMQETFGSTCHGAGRQLSRTKAKKVASGRHVAEELRARGIIVRGAS 946
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EE PE+YK+V +VV+ CH GIS+K +LRP+ IKG
Sbjct: 947 IRTINEEIPEAYKDVAEVVEVCHRAGISRKVAQLRPIGCIKG 988
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E + H ERL + +F +P GVG+ G + ++ ++L G W++R G+ D E
Sbjct: 617 YEEVEPHLERLVEMLFRRVPTGVGASGALRVSKQELRRVAVEGAHWAVRHGFGSEVDLEF 676
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT-GSSKYCHGVGSI 565
EE GR+ ADP+ VS RA +RG +D+ GT GS + VG +
Sbjct: 677 IEENGRIEGADPAAVSERAYERG----ADQLGTLGSGNHFLEVGYV 718
>gi|254167887|ref|ZP_04874736.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
gi|197623178|gb|EDY35744.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
Length = 484
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 247/480 (51%), Gaps = 88/480 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V GV + + H M+E+++ P +Q+ANVA LPGIV S+ +PD+H
Sbjct: 24 MRVPGVIYASQH----MIEQIKRDNAP----------EQVANVATLPGIVKASMAMPDIH 69
Query: 61 --------------------------------------------SVPSTQWLSDNTMRS- 75
P + L DN +
Sbjct: 70 WGYGFPIGGVAAFDAEEGIISPGGVGYDINCGVRLLTTNLDEKDVRPKLKELVDNIFMNV 129
Query: 76 -SNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASK--------MGIEDVGQVCVMIHSG- 125
S + ++ L L ++ E+ V + KWA +E+ G + H+
Sbjct: 130 PSGVGEKGKLRL----NFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSIKFADHTKV 185
Query: 126 -----SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
RG Q+ T AGNH+ E+Q V++I+ A K GI GQ+ VMIH+GSRG G
Sbjct: 186 SDKAKKRG-APQLGTLGAGNHFLEVQRVEKIFLPEIAKKFGITHEGQITVMIHTGSRGLG 244
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMH 232
HQVA+D + ME+A ++ I+ D QLACA + S + + + A F T L H
Sbjct: 245 HQVASDYIRIMEQAARKYGIKLVDPQLACAPVKSKEAEDYFAAMSAAANFGFTNRQLITH 304
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ ++F K F P+DL MH++Y V+HNIAK EEH+VDGK+ + VHRKG+TRAF
Sbjct: 305 WVRESFGKVFGEDPEDLGMHLVYGVAHNIAKLEEHIVDGKRMKVYVHRKGATRAFAAGRE 364
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
+ Y+ GQPVLI G MGT SYVL GT K M+ETFGSTCHGAGR +SR + R +
Sbjct: 365 ELSQLYRDVGQPVLIPGDMGTSSYVLVGTRKAMEETFGSTCHGAGRVMSRHAALRKFRGE 424
Query: 353 EVLNKL-ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EV +L E + I +R AS ++ EEAP++YK+V +VV GIS+ K+ P+ V+KG
Sbjct: 425 EVKRELWEKKHIYVRSASNRVAAEEAPDAYKDVNEVVRAVEGAGISRIVAKMVPLGVVKG 484
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F ++P GVG KG + +N +L + L+ G W++ GY W ED E EE G +
Sbjct: 118 LKELVDNIFMNVPSGVGEKGKLRLNFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSI 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
AD +KVS +AKKRG PQ+
Sbjct: 178 KFADHTKVSDKAKKRGAPQL 197
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
+ L ++F ++P GVG KG + +N +L + L+ G W++ GY W ED E E
Sbjct: 119 KELVDNIFMNVPSGVGEKGKLRLNFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSIK 178
Query: 476 F-DHIPV 481
F DH V
Sbjct: 179 FADHTKV 185
>gi|268316075|ref|YP_003289794.1| hypothetical protein Rmar_0504 [Rhodothermus marinus DSM 4252]
gi|262333609|gb|ACY47406.1| protein of unknown function UPF0027 [Rhodothermus marinus DSM 4252]
Length = 988
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ V +I+D AA MG+ GQV V+IH+GSRGFG+Q+ D L M++A+ R
Sbjct: 708 SGNHFLEVGYVAQIFDDEAARVMGLFP-GQVTVIIHTGSRGFGYQICDDYLAVMDRALAR 766
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+I DRQLACA + S + + + F + H AFA+ +D+
Sbjct: 767 YHIRLPDRQLACAPLRSPEGQQYLAAMRCGINFAFANRQIIAHNTRKAFAEALGMREEDI 826
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +Y+V+HNIAK EEH +DG+++ + VHRKG+TRAFPP H IP Y+ GQPVLI G
Sbjct: 827 GLRTVYEVAHNIAKIEEHTIDGERRRVCVHRKGATRAFPPGHSQIPAAYRSIGQPVLIPG 886
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYVL GTE+ MQETFGSTCHGAGR LSR K+++ + V +L ++GI +R AS
Sbjct: 887 DMGRYSYVLVGTEQAMQETFGSTCHGAGRQLSRTKAKKVASGRHVAEELRARGIIVRGAS 946
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EE PE+YK+V +VV+ CH GIS+K +LRP+ IKG
Sbjct: 947 IRTINEEIPEAYKDVAEVVEVCHRAGISRKVAQLRPIGCIKG 988
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E + H ERL + +F +P GVG+ G + ++ ++L G W++R G+ D E
Sbjct: 617 YEEVEPHLERLVEMLFRRVPTGVGASGALRVSKQELRRVAVEGAHWAVRHGFGSEVDLEF 676
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT-GSSKYCHGVGSI 565
EE GR+ ADP+ VS RA +RG +D+ GT GS + VG +
Sbjct: 677 IEENGRIEGADPAAVSERAYERG----ADQLGTLGSGNHFLEVGYV 718
>gi|308271516|emb|CBX28124.1| UPF0027 protein TK0358 [uncultured Desulfobacterium sp.]
Length = 477
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 248/475 (52%), Gaps = 80/475 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G+ + D M+E ++ VKQ+ANVA LPGI+ S+ +PD+H
Sbjct: 19 MRVPGIIYAGDS----MIESIKQE----------EAVKQVANVATLPGIIKASLAMPDIH 64
Query: 61 --------SVPSTQW------------------------LSDNTMRS------SNIWKRS 82
V + W L++ +++ +++++
Sbjct: 65 WGYGFPIGGVAAFDWENGVISPGGVGYDINCGVRLAGTSLTEKDVKNKLEDIVNSLYQNI 124
Query: 83 PLTLGA-GN---HYAEIQIVDEIYDKWA-----ASKMGIEDVGQVCVMIHSG-------- 125
P +G+ GN Y+E + V + KWA A + IE M ++
Sbjct: 125 PSGVGSTGNIKLAYSEEKKVLKEGSKWALRHGMAYESDIEHTEDYGCMSNADPDTLSDKA 184
Query: 126 -SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG Q+ T +GNH+ EI +VD+IYD A G+ + GQV VM+HSGSRG G+QV
Sbjct: 185 LERGL-KQLGTLGSGNHFLEIGLVDKIYDSDVARVFGLFE-GQVTVMLHSGSRGLGYQVC 242
Query: 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYD 236
D L M K +K+ E DRQLACA I S++ A A + + MH +
Sbjct: 243 DDFLAHMAKNIKKIGFEIPDRQLACAMIQSSEGMRYFNAMACAANYAWANRQILMHKARE 302
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
P DL M+++YDV HNIAK E H+VDGK++ L VHRKG+TRAFP H +
Sbjct: 303 VLMHVLQIGPRDLGMNLVYDVCHNIAKKETHVVDGKKRVLCVHRKGATRAFPAGHESVCE 362
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
Y+ GQPVL+ G MG SYVL GTE M++TFGSTCHGAGR LSR + + + +
Sbjct: 363 KYRAVGQPVLVPGDMGRASYVLVGTENAMKDTFGSTCHGAGRVLSRTAALKKSKGRSIAR 422
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+LE +GI +R + EE PE+YKN+++VV+ H GI++K KL+P+AV+KG
Sbjct: 423 ELEDKGIFVRWTGRSTLGEEMPEAYKNISEVVNVVHGAGIARKVAKLKPMAVLKG 477
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K E + S++ +IP GVGS G I + + ++ L+ G W+LR G + D EH E+Y
Sbjct: 110 KNKLEDIVNSLYQNIPSGVGSTGNIKLAYSEEKKVLKEGSKWALRHGMAYESDIEHTEDY 169
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G M NADP +S +A +RGL Q+
Sbjct: 170 GCMSNADPDTLSDKALERGLKQL 192
>gi|374633762|ref|ZP_09706127.1| hypothetical protein MetMK1DRAFT_00029040 [Metallosphaera
yellowstonensis MK1]
gi|373523550|gb|EHP68470.1| hypothetical protein MetMK1DRAFT_00029040 [Metallosphaera
yellowstonensis MK1]
Length = 480
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+VD+IYD+ A +GI GQV VM+H+GSRG GHQ+A+D L ME+AMK+
Sbjct: 200 AGNHFLEVQVVDKIYDERVAKSLGITREGQVTVMVHTGSRGLGHQIASDYLQIMERAMKK 259
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LA NS + + + + F + L H ++F K F P+ L
Sbjct: 260 YGIQVPDRELAAIPFNSREGQDYFRAMVAGANFAWSNRQLITHWARESFGKVFKVDPEKL 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+H+IYDV+HNIAK EE+ +DGK+K +LVHRKG+TRAFPP P IPV+++ TGQ VLI G
Sbjct: 320 DLHIIYDVAHNIAKIEEYSIDGKKKRVLVHRKGATRAFPPGSPEIPVEHRETGQVVLIPG 379
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ L+ +GI +R A+
Sbjct: 380 SMGTASYVMVGVPEG-RRTWFTAPHGAGRWMSREAAVRNYPANSVIGSLDEKGIIVRAAT 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 439 RRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVTKG 480
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K L + ++ ++P GVGS+G + ++ ++L+ L G+ W +GY W
Sbjct: 103 LRTNLDYNDVKPKLIELVEELYRNVPSGVGSEGKVKLSQQELDNLLSEGVKWVTDKGYGW 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED + E+ G ADPSKVS AK+RG Q+
Sbjct: 163 AEDMNNIEQRGSWDLADPSKVSSVAKQRGASQL 195
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
L + ++ ++P GVGS+G + ++ ++L+ L G+ W +GY WAED + E+
Sbjct: 119 LVEELYRNVPSGVGSEGKVKLSQQELDNLLSEGVKWVTDKGYGWAEDMNNIEQ 171
>gi|150399454|ref|YP_001323221.1| hypothetical protein Mevan_0703 [Methanococcus vannielii SB]
gi|150012157|gb|ABR54609.1| protein of unknown function UPF0027 [Methanococcus vannielii SB]
Length = 480
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/282 (47%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEI+D+ AA G+E QV +MIH+GSRG GHQ+ D L ME A K+
Sbjct: 200 SGNHFLEVQYVDEIFDENAAKAYGVEK-DQVVLMIHTGSRGLGHQICADYLRYMESASKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NI+ DRQLACA I+S + + + + L + I ++F + F + +DL
Sbjct: 259 YNIKLPDRQLACAPISSEEGMRYFNAMSAGANYAWVNRQLVTNWIRESFEQVFKMSAEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M +IYDV+HNIAK E+H++DGK K ++VHRKG+TRAF P H IP +Y GQPV+I G
Sbjct: 319 EMDIIYDVAHNIAKKEQHIIDGKMKNVIVHRKGATRAFGPGHDEIPSEYVKIGQPVIIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTEK M ETFGST HGAGRALSR ++ + EV KL+ +GI + S
Sbjct: 379 DMGTASYLMHGTEKAMNETFGSTAHGAGRALSRVQALKLYKGNEVQEKLQKKGILVLADS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EE PE+YK++ V + C+ GIS K K+RP+ V+KG
Sbjct: 439 KGVIAEECPEAYKDIETVANVCNDSGISLKVAKMRPMGVVKG 480
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
+ + L Q +F ++P G+GSKG I + +++ LE G+DW+ EGY W D H EE+G+
Sbjct: 115 NLKGLLQEIFKNVPSGLGSKGKIKITKNEIDNVLEEGVDWASSEGYAWKNDYRHIEEHGK 174
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
M NAD S VS AKKRGLPQ+
Sbjct: 175 MKNADASLVSDNAKKRGLPQL 195
>gi|15921558|ref|NP_377227.1| hypothetical protein ST1292 [Sulfolobus tokodaii str. 7]
gi|15622344|dbj|BAB66336.1| hypothetical protein STK_12920 [Sulfolobus tokodaii str. 7]
Length = 483
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/282 (48%), Positives = 185/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+IYD A +GI GQV VM+H+GSRG GHQVA+D L ME+AMK+
Sbjct: 203 AGNHFLEIQVVDKIYDPEVAKALGITHEGQVTVMVHTGSRGLGHQVASDYLQIMERAMKK 262
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DR+LA N+ + + A A F T + H + ++F K F+ P+ L
Sbjct: 263 YNITVPDRELAAIPFNTREAQDYIHAMASAANFAWTNRQMISHWVRESFGKVFHVDPEKL 322
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+ +IYDV+HNIAK EE+ ++GK+K +LVHRKG+TRAFPP P IPVDY+ GQ VLI G
Sbjct: 323 DLSIIYDVAHNIAKIEEYDINGKRKKVLVHRKGATRAFPPGSPEIPVDYRNIGQVVLIPG 382
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ LE +GI IR A+
Sbjct: 383 SMGTASYVMVGIPEG-RRTWYTAPHGAGRWMSREAAVRNYPVNSVVQNLEQKGIVIRAAT 441
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 442 RRVVSEEAPGAYKDVDRVAKVAHEVKIAKLVVRLRPIGVTKG 483
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K+ L + ++ ++P GVGS+G + ++ + L+ L G+ W++ GY W
Sbjct: 106 LRTNLDYKDVKDKLRDLVEEIYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVDNGYGW 165
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D EH E++G ADPSKVS AK+RG Q+
Sbjct: 166 EKDMEHIEQHGSWDLADPSKVSPIAKQRGHTQL 198
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
L + ++ ++P GVGS+G + ++ + L+ L G+ W++ GY W +D EH E+
Sbjct: 122 LVEEIYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVDNGYGWEKDMEHIEQ 174
>gi|223478114|ref|YP_002582576.1| protein RtcB [Thermococcus sp. AM4]
gi|214033340|gb|EEB74167.1| Protein RtcB [Thermococcus sp. AM4]
Length = 960
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 185/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+IYD+ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 680 SGNHFLEVQVVDKIYDEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 738
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+L S + + + A F + H + ++F + F +D+
Sbjct: 739 YGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFRRKAEDM 798
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+MH++YDV+HNIAK EEH VDG++ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 799 EMHIVYDVAHNIAKVEEHEVDGRKVKVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPG 858
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGS+CHGAGR LSR + R + N+L +GI +R AS
Sbjct: 859 SMGTASYVLAGAEGSMRETFGSSCHGAGRLLSRKAATRQYRGDRLRNELMRRGIYVRAAS 918
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V +VV+ H GI+K ++RP+ V KG
Sbjct: 919 LRVVAEEAPGAYKSVDNVVNVVHQAGIAKLVARMRPMGVAKG 960
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ L++ L G W++ GY W ED EH E
Sbjct: 591 EVRPRIKELVDTLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLE 650
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP+ VS RAK+RG PQ+
Sbjct: 651 EGGRMEGADPNAVSQRAKQRGAPQL 675
>gi|325958314|ref|YP_004289780.1| hypothetical protein Metbo_0556 [Methanobacterium sp. AL-21]
gi|325329746|gb|ADZ08808.1| protein of unknown function UPF0027 [Methanobacterium sp. AL-21]
Length = 481
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/282 (47%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ ++EIYD+ AA GIE+ GQ+ +MIHSGSRG GHQ+ D L M+KA K
Sbjct: 201 SGNHFLEIQKMEEIYDEKAAKAFGIEE-GQITIMIHSGSRGCGHQICADYLRTMDKAYKA 259
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DRQLACA ++S + + + A + T + +H + ++F + + D+
Sbjct: 260 YNIDLPDRQLACAPVDSQEAQDYFKAMSCAANYAWTNRQMILHWVRESFEEVYKKDSQDM 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M V+YDV+HNIAK E+H + G + + VHRKG+TRAF P IP +Y+ GQPV+I G
Sbjct: 320 NMGVVYDVAHNIAKKEKHTIKGIETEVYVHRKGATRAFGPGREEIPEEYRKIGQPVMIPG 379
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SY+L GTE M+ETFGST HGAGR LSRA ++R + EV + L S+GI+++ S
Sbjct: 380 TMGTASYILKGTETAMEETFGSTAHGAGRKLSRAGAKREFNGDEVKSMLASKGITLKANS 439
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV+ CH GIS K+ P+ V KG
Sbjct: 440 MPVVAEEAPGAYKDVDQVVNVCHKAGISLLVGKMIPIGVAKG 481
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + L ++F ++P GVGSKG + + ++++ L G +W++ GY W D + EE
Sbjct: 114 KPRIKELIDTLFKNVPSGVGSKGKVRLKEGEIDDVLNNGAEWAVENGYGWESDLKFLEEN 173
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G+M +AD VS +AKKRG+PQ+
Sbjct: 174 GKMESADSEAVSAKAKKRGIPQL 196
>gi|347523842|ref|YP_004781412.1| hypothetical protein Pyrfu_1301 [Pyrolobus fumarii 1A]
gi|343460724|gb|AEM39160.1| protein of unknown function UPF0027 [Pyrolobus fumarii 1A]
Length = 492
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 247/476 (51%), Gaps = 81/476 (17%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V V F +++L K M ++L ++Q ANVA LPGI S +PD H
Sbjct: 33 MRVPAVIFADEYLLKKMQQDLT--------------LEQAANVACLPGIQVASYVMPDGH 78
Query: 61 S--------VPSTQWLSDNTMRSSNI-------------------------------WKR 81
V D + + ++
Sbjct: 79 QGYGFPIGGVAGMAIDEDGVISPGGVGYDINCGVRLLRTNLDYNEVKPKLKELIQELYRN 138
Query: 82 SPLTLG-AGNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VMIH 123
P LG +G + IQ ++++ D+ WA IE+ G V
Sbjct: 139 VPSGLGKSGKIHLSIQELNKVLDEGVMWAVQRGYGWADDPEHIEERGSWTLADSSKVSQR 198
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+ RG Q+ T +GNH+ E+Q+VDEIYD A +GIE VGQV VMIH+GSRG GHQV
Sbjct: 199 AKQRG-APQLGTLGSGNHFLEVQVVDEIYDPQIAKVLGIERVGQVMVMIHTGSRGLGHQV 257
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIY 235
A+D L+ ME+AM++ I DR+LA +S + + + + T L H +
Sbjct: 258 ASDYLMIMERAMRKYGIRPPDRELASVPFSSREAQDYLRAMAAAANYAWTNRQLITHWVR 317
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
++F + + PD LD+H+IYDV+HNIAK EEH VDGK+ L+VHRKG+TRAFPP HP IP
Sbjct: 318 ESFRRVLHVDPDKLDLHIIYDVAHNIAKIEEHEVDGKRMKLVVHRKGATRAFPPGHPEIP 377
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
D++ GQ VLI G+MGT S+V+ G +G + T+ S HG+GR +SR + R EV+
Sbjct: 378 KDHREIGQVVLIPGSMGTPSFVMVGIPEG-KRTWYSAPHGSGRWMSREAAVRTYRPAEVV 436
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+L QGI + A+ +++ EEAP +YK VV HAV I+K KLRP+ V+KG
Sbjct: 437 EQLARQGIVVMAANRRVIAEEAPGAYKPSERVVRVAHAVKIAKLVVKLRPIGVVKG 492
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + E K + L Q ++ ++P G+G G I ++ ++L + L+ G+ W+++ GY W
Sbjct: 115 LRTNLDYNEVKPKLKELIQELYRNVPSGLGKSGKIHLSIQELNKVLDEGVMWAVQRGYGW 174
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
A+D EH EE G AD SKVS RAK+RG PQ+
Sbjct: 175 ADDPEHIEERGSWTLADSSKVSQRAKQRGAPQL 207
>gi|218884521|ref|YP_002428903.1| hypothetical protein DKAM_1210 [Desulfurococcus kamchatkensis
1221n]
gi|218766137|gb|ACL11536.1| protein of unknown function UPF0027 [Desulfurococcus kamchatkensis
1221n]
Length = 482
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 191/282 (67%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+V+EIYD AA MGI +GQV +MIH+GSRG GHQVA+D L+ ME+AM++
Sbjct: 202 AGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGSRGLGHQVASDYLMIMERAMRK 261
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LA SN+ + + K + + + H ++F + F P+ L
Sbjct: 262 YGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQIITHWTRESFKQVFKKDPEAL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EEH+V+G++ ++VHRKG+TRAFPP HP IP DY+ GQPVLI G
Sbjct: 322 GIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFPPGHPDIPGDYKSIGQPVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GTE G + T+ S HGAGR LSR + R+ +V+++L +G+ ++ A+
Sbjct: 382 SMGTASYILLGTESGAR-TWYSAPHGAGRWLSRGDAIRSYSPDKVMDELGRKGVVLKAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++ EEAP +YK+V VV VGI++ K+RP+ V+KG
Sbjct: 441 RRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVVKG 482
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + L +++F ++P GVGS G + ++ +L++ L G++W++ G+ W D EH EE
Sbjct: 115 KPRLKDLVEALFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKRDLEHIEEN 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM +AD SKVS AK+RG Q+
Sbjct: 175 GRMKSADASKVSKVAKERGHEQL 197
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F ++P GVGS G + ++ +L++ L G++W++ G+ W D EH E
Sbjct: 121 LVEALFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKRDLEHIE 172
>gi|410671521|ref|YP_006923892.1| hypothetical protein Mpsy_2320 [Methanolobus psychrophilus R15]
gi|409170649|gb|AFV24524.1| hypothetical protein Mpsy_2320 [Methanolobus psychrophilus R15]
Length = 488
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+IYD+ AAS G+ + GQ+ MIH GSRG GHQ+ TD L + +A K+
Sbjct: 208 SGNHFLEVQYVDKIYDEEAASAFGLRE-GQIAFMIHCGSRGAGHQICTDHLQVLTQASKK 266
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NI D+QLACA S + + + K + + MH + F K F DL
Sbjct: 267 YNITLPDKQLACAPAQSPEAQDYFKAMLCAANYAWVNRHVIMHWTREVFEKTFAEEFGDL 326
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
MH++YDV+HNIAK EEH VDGK+ + VHRKG+TRAF P HP +P YQ GQPV+I G
Sbjct: 327 GMHLVYDVAHNIAKLEEHNVDGKKTEVYVHRKGATRAFAPGHPDLPEAYQAIGQPVIIPG 386
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL T++ M +FGS CHGAGR +SR ++ L ++V +L +GI +R +
Sbjct: 387 SMGTASYVLRSTKESMDISFGSACHGAGRVMSRKSAKSELHGEQVREELSMKGIQVRASQ 446
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P L+ EEAPE YK+ ++VVD H +GI+ K +L P+ VIKG
Sbjct: 447 PSLIAEEAPEVYKSSSEVVDVVHELGIATKVARLLPMGVIKG 488
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+L +F+ IP GVGSK I ++ +L+E G+ W++ GY D ++CE G++
Sbjct: 124 LSKLVDDLFEAIPTGVGSKSRIRVSDAELDEIFVNGVQWAVDNGYGVKADVDNCESAGKI 183
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADPSKVS++A+KRG PQ+
Sbjct: 184 SGADPSKVSIKARKRGRPQL 203
>gi|296109480|ref|YP_003616429.1| protein of unknown function UPF0027 [methanocaldococcus infernus
ME]
gi|295434294|gb|ADG13465.1| protein of unknown function UPF0027 [Methanocaldococcus infernus
ME]
Length = 945
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++I+D+ AA G+ QV +++H+GSRG GHQV TD L +EKA K+
Sbjct: 665 SGNHFLEVQYVEQIFDEEAAEAYGLFK-DQVVILVHTGSRGLGHQVCTDYLKILEKAYKK 723
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NI DRQLACA S + +A+ K + + + H + ++F + F +DL
Sbjct: 724 YNISIPDRQLACAPFESEEGQAYYKAMCCSANYAWANRQMITHWVRESFEEVFKIHAEDL 783
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH ++ K+ ++VHRKG+TRAFPP H ++P DY+ GQPVL+ G
Sbjct: 784 EMEIVYDVAHNIAKKEEHRIEKKKVKVVVHRKGATRAFPPGHEVLPKDYKDIGQPVLLPG 843
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SYV+ GTEK M+ETFGST HGAGR LSRAK+ + E+ +LE GI S
Sbjct: 844 DMGTASYVMKGTEKAMEETFGSTAHGAGRKLSRAKALKLWRGSEIKRRLEEMGIIALSDS 903
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAPE+YK++ V DTCH GIS K +++P+ V+KG
Sbjct: 904 KAVLAEEAPEAYKSIDLVADTCHKAGISLKVARMKPMGVVKG 945
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++F ++P G+GSKGII + +++ LE G W+++EG+ W ED ++ EE G M +A
Sbjct: 584 LVKTLFRNVPSGLGSKGIIKFSKDVMDDVLEEGAKWAVKEGFGWKEDIKYIEENGCMEDA 643
Query: 531 DPSKVSMRAKKRGLPQV 547
D S VS +AK RG Q+
Sbjct: 644 DSSYVSEKAKDRGRAQL 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F ++P G+GSKGII + +++ LE G W+++EG+ W ED ++ E
Sbjct: 584 LVKTLFRNVPSGLGSKGIIKFSKDVMDDVLEEGAKWAVKEGFGWKEDIKYIE 635
>gi|327310624|ref|YP_004337521.1| hypothetical protein TUZN_0719 [Thermoproteus uzoniensis 768-20]
gi|326947103|gb|AEA12209.1| hypothetical protein TUZN_0719 [Thermoproteus uzoniensis 768-20]
Length = 483
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 186/284 (65%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+I+D+ AA MGIE GQ+ VMIH+GSRGFGHQVATD L+ ME+ M+
Sbjct: 201 SGNHFLEIQVVDKIFDEKAAKTMGIEQEGQILVMIHTGSRGFGHQVATDYLMVMERKMRE 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + + + K T + MH + +AF + F + + +
Sbjct: 261 WGLRLPDRELAAAPLRDKVAEDYLKAMAAAANFAWTNRQIIMHWVREAFRRVFGSI-EKV 319
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK E H VD G + + VHRKG+TRAFPP HP IP Y+ GQPVLI
Sbjct: 320 GLEIVYDVAHNIAKLETHEVDDKGTLRKVWVHRKGATRAFPPGHPEIPAKYREIGQPVLI 379
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG+ S++L GT M+ TFG+ HGAGR LSR + R+ Q V +LE +GI +R
Sbjct: 380 PGSMGSASWILVGTHDAMKITFGTAPHGAGRMLSREAAIRSFPPQRVRAELEKRGIIVRS 439
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAPE+YKNV VV+T H VG +KK + RP+ V+KG
Sbjct: 440 AETEVISEEAPEAYKNVDLVVETAHQVGFAKKVVRQRPIGVVKG 483
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + + L +F +P GVG G + ++ + ++A+ G++W++ +G+ W
Sbjct: 104 LRTNLTEKDVRPKLKELVDEIFKLVPPGVGETGHLKLSVSEFDKAIAEGVEWAISKGFGW 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDKE E+ G ADPSKVS RAK RG Q+
Sbjct: 164 PEDKEFIEQKGSWDLADPSKVSERAKNRGKDQL 196
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
L +F +P GVG G + ++ + ++A+ G++W++ +G+ W EDKE E+
Sbjct: 120 LVDEIFKLVPPGVGETGHLKLSVSEFDKAIAEGVEWAISKGFGWPEDKEFIEQ 172
>gi|298241605|ref|ZP_06965412.1| protein of unknown function UPF0027 [Ktedonobacter racemifer DSM
44963]
gi|297554659|gb|EFH88523.1| protein of unknown function UPF0027 [Ktedonobacter racemifer DSM
44963]
Length = 485
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 183/282 (64%), Gaps = 6/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+AE+Q VD IYD+ AA +GI +GQ+ IH GSRGFGHQ+A D + E K
Sbjct: 204 SGNHFAEVQYVDHIYDQEAAEALGIGQLGQIVTTIHCGSRGFGHQIAEDYIKIAEAKQKA 263
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
DRQLAC I+S + + A A F L MH + DAF+ F
Sbjct: 264 YGYHLADRQLACMPIHSKEGQDYLGAMACAANFAWANRQLLMHGVRDAFSSVFGRKARAK 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM ++YDV HNIAK EE+ +DG++K + VHRKG+TRAFPP HP +P Y+ GQPVLI G
Sbjct: 324 DMPMVYDVCHNIAKMEEYEIDGEKKRVCVHRKGATRAFPPGHPAMPEKYRAVGQPVLIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG S+VL G + M+++FGS CHGAGR SR +++++ +++L++LE++G+++RV S
Sbjct: 384 DMGRYSFVLVGAQGSMEQSFGSCCHGAGRRQSRTAAKKSITGKDLLSQLEAKGVTVRVHS 443
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ EEAP +YK+ VV+T H G+++ +L+P+ VIKG
Sbjct: 444 KNLLAEEAPTAYKDAQMVVNTVHNAGLARLVVRLKPIIVIKG 485
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K +RLA ++F+ +P GVG G+ + R++ E ++ G W++ EGY ED E EE
Sbjct: 117 KGKADRLADALFNTLPSGVGGYGMRRLTEREMLEVMKRGSAWAVEEGYGVEEDLEVTEEN 176
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G + A P VS +A +RG+ Q+
Sbjct: 177 GCLKGARPEAVSRKALERGVGQL 199
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNV G+ + +D L + +L + + Q+ANVA LPGIVG S+G+PD+H
Sbjct: 26 MNVPGIVYADDELIQQILSD--------------NALTQVANVATLPGIVGYSLGMPDIH 71
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+RLA ++F+ +P GVG G+ + R++ E ++ G W++ EGY ED E E
Sbjct: 121 DRLADALFNTLPSGVGGYGMRRLTEREMLEVMKRGSAWAVEEGYGVEEDLEVTE 174
>gi|432328913|ref|YP_007247057.1| hypothetical protein AciM339_1019 [Aciduliprofundum sp. MAR08-339]
gi|432135622|gb|AGB04891.1| hypothetical protein AciM339_1019 [Aciduliprofundum sp. MAR08-339]
Length = 484
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 177/470 (37%), Positives = 245/470 (52%), Gaps = 68/470 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF--LPGVKQ---------------IANV 43
MNV G+ F + H M+E+++ P V LPG+ + I V
Sbjct: 24 MNVPGIIFASQH----MIEQIKKDNAPEQVANVATLPGIIKASMAMPDIHWGYGFPIGGV 79
Query: 44 AAL--------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMRS--SNIWKRSPL 84
AA PG VG + L + P + L D + S + ++ L
Sbjct: 80 AAFDAEEGIISPGGVGYDINCGVRLLRTDLEEKDVRPKLKELVDTIFVNVPSGVGEKGKL 139
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKM--------GIEDVGQVCVMIHSG------SRGFG 130
L + E+ V + KWA +E+ G + H+ RG
Sbjct: 140 RL----TFQELNKVLDYGAKWAVENGYGWSEDLDRLEEGGSIKYADHTKVSEKAKKRG-A 194
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
Q+ T AGNH+ E+Q+VD+IY A K GI GQ+ VMIH+GSRG GHQVA+D +
Sbjct: 195 PQLGTLGAGNHFLEVQMVDKIYIPDIAKKFGITHEGQIMVMIHTGSRGLGHQVASDYIRV 254
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQF 242
ME A ++ I+ D QLACA + S + + + A F T L MH + ++F K F
Sbjct: 255 MEGASRKYGIKLADSQLACAPVKSKEAEDYFAAMSAAANFGFTNRQLIMHWVRESFGKVF 314
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
P+DL MH++Y V+HNIAK EEH VDGK+ + VHRKG+TRAF P + Y+ G
Sbjct: 315 GEDPEDLGMHLVYGVAHNIAKLEEHTVDGKRVKVYVHRKGATRAFAAGRPELTDVYRDVG 374
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQ 361
QPVLI G MGT SYVL GT++ M+ETFGSTCHGAGR +SR + R ++V +L E +
Sbjct: 375 QPVLIPGDMGTASYVLVGTQRAMEETFGSTCHGAGRVMSRHAALRRFRGEQVKRELWEKK 434
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I +R AS ++ EEAP +YKNV DVV GIS+ ++ P+ V+KG
Sbjct: 435 RIYVRSASNRVAAEEAPGAYKNVDDVVKAVEGAGISRIVARMVPLGVVKG 484
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F ++P GVG KG + + ++L + L+ G W++ GY W+ED + EE G +
Sbjct: 118 LKELVDTIFVNVPSGVGEKGKLRLTFQELNKVLDYGAKWAVENGYGWSEDLDRLEEGGSI 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
AD +KVS +AKKRG PQ+
Sbjct: 178 KYADHTKVSEKAKKRGAPQL 197
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F ++P GVG KG + + ++L + L+ G W++ GY W+ED + E
Sbjct: 119 KELVDTIFVNVPSGVGEKGKLRLTFQELNKVLDYGAKWAVENGYGWSEDLDRLE 172
>gi|452210116|ref|YP_007490230.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Methanosarcina mazei Tuc01]
gi|452100018|gb|AGF96958.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Methanosarcina mazei Tuc01]
Length = 500
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 185/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEIYD AS G+E+ GQV VM+H GSRG GHQ+ TD L ++ +A+KR
Sbjct: 220 SGNHFLEVQYVDEIYDPEVASAFGLEE-GQVTVMVHCGSRGAGHQICTDHLKELSQAVKR 278
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
IE D+QLACA S + + + K + + H ++F K F DD+
Sbjct: 279 YGIEIPDKQLACAPAQSKEAQNYFKAMLCAANYAWANRQMITHWTRESFEKVFGRDADDM 338
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HN+AK EEH ++G++K + VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 339 EMSLLYDVAHNVAKLEEHSIEGRKKEVYVHRKGATRAFPAGHPEVPSAYRDVGQPVLIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G+ + M +FGS CHGAGR +SRA +++ Q + LE+ GI++R
Sbjct: 399 SMGTPSFILCGSTESMDVSFGSACHGAGRVMSRAHAKKEFHGQSIKEDLEAHGITVRATH 458
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P ++ EEAP YK+ ++VV+ H +GI++K ++ P+ V KG
Sbjct: 459 PSVIAEEAPGVYKSSSEVVNVVHELGIARKVARVIPLGVAKG 500
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H +RL +F ++P GVGSK + ++L+ A G W++ GY D EHCE G
Sbjct: 135 HIKRLTDELFSNVPSGVGSKSRFKASDKELDSAFLEGAKWAVDAGYGVEADVEHCEGNGF 194
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ AD S VS +A+ RG PQ+
Sbjct: 195 LEGADTSHVSSKARNRGKPQL 215
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+RL +F ++P GVGSK + ++L+ A G W++ GY D EH E
Sbjct: 137 KRLTDELFSNVPSGVGSKSRFKASDKELDSAFLEGAKWAVDAGYGVEADVEHCE 190
>gi|269929152|ref|YP_003321473.1| hypothetical protein Sthe_3251 [Sphaerobacter thermophilus DSM
20745]
gi|269788509|gb|ACZ40651.1| protein of unknown function UPF0027 [Sphaerobacter thermophilus DSM
20745]
Length = 487
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/294 (46%), Positives = 183/294 (62%), Gaps = 23/294 (7%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
QV T +GNHY E+Q+VDEIYD+ AA G+ VGQV +M+H+GSR GHQ+ TD L +
Sbjct: 203 QVGTLGSGNHYVEVQVVDEIYDEEAARAFGLA-VGQVTIMLHTGSRALGHQIGTDYLPFL 261
Query: 190 EKAMKRDNIETNDRQLACARINS------------NKNKAFAKQFNTTPDDLDMHVIYDA 237
E+A ++ NI DR+L CA + S N AFA + T H+I +A
Sbjct: 262 ERAARKYNIPIRDRELVCAPVESPEGRQYYAAVMAGANTAFANRQVLT------HLIREA 315
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
K P+ + +Y+++HN K EEH V+G++K LLVHRKG+TRAF P P IP
Sbjct: 316 LNKALGVAPESI--RTVYEIAHNTVKFEEHEVNGRRKRLLVHRKGATRAFGPGRPEIPER 373
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
Y+ GQPVL+GGTMGT SYVL GTEKGM++TFGS HGAGRA SR K+++ V+ +
Sbjct: 374 YRSVGQPVLVGGTMGTASYVLRGTEKGMRDTFGSALHGAGRAKSRTKAKKEYPADRVIRQ 433
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ +GI++R + EEAP +YK+V VVD G+ K +LRPV IKG
Sbjct: 434 LKERGITVRAHGRSSISEEAPGAYKDVEQVVDIMAGAGVIAKVARLRPVVTIKG 487
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E KE +R+A ++F +P G+GS G + + ++++ L G +++ GY D + E
Sbjct: 122 EGKE--DRVADALFHGVPAGLGSTGELKLTEKEIDRVLREGAHYAVNLGYGTPADLTYVE 179
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS AK+R L QV
Sbjct: 180 EQGRMSGADPDAVSRTAKQRQLRQV 204
>gi|390939017|ref|YP_006402755.1| hypothetical protein Desfe_1313 [Desulfurococcus fermentans DSM
16532]
gi|390192124|gb|AFL67180.1| protein of unknown function UPF0027 [Desulfurococcus fermentans DSM
16532]
Length = 482
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 190/282 (67%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+V+EIYD AA MGI +GQV +MIH+GSRG GHQVA+D L+ ME+AM++
Sbjct: 202 AGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGSRGLGHQVASDYLMIMERAMRK 261
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LA SN+ + + K + + + H ++F + F + L
Sbjct: 262 YGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQIITHWTRESFKQVFKKDAETL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EEH+V+G++ ++VHRKG+TRAFPP HP IP DY+ GQPVLI G
Sbjct: 322 GIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFPPGHPDIPGDYKSIGQPVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GTE G + T+ S HGAGR LSR + R+ +V+++L +G+ ++ A+
Sbjct: 382 SMGTASYILLGTESGAR-TWYSAPHGAGRWLSRGDAIRSYSPDKVVDELSRKGVVLKAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++ EEAP +YK+V VV VGI++ K+RP+ V+KG
Sbjct: 441 RRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVVKG 482
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + L + +F ++P GVGS G + ++ +L++ L G++W++ G+ W +D EH EE
Sbjct: 115 KPRLKDLVEVLFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKKDLEHIEEN 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM +AD SKVS AK+RG Q+
Sbjct: 175 GRMKSADASKVSKVAKERGHEQL 197
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L + +F ++P GVGS G + ++ +L++ L G++W++ G+ W +D EH E
Sbjct: 121 LVEVLFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKKDLEHIE 172
>gi|21227640|ref|NP_633562.1| replication factor C subunit [Methanosarcina mazei Go1]
gi|20906030|gb|AAM31234.1| Replication factor C subunit [Methanosarcina mazei Go1]
Length = 500
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 185/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEIYD AS G+E+ GQV VM+H GSRG GHQ+ TD L ++ +A+KR
Sbjct: 220 SGNHFLEVQYVDEIYDPEVASAFGLEE-GQVTVMVHCGSRGAGHQICTDHLKELSQAVKR 278
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
IE D+QLACA S + + + K + + H ++F K F DD+
Sbjct: 279 YGIEIPDKQLACAPAQSKEAQNYFKAMLCAANYAWANRQMITHWTRESFEKIFGRDADDM 338
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HN+AK EEH ++G++K + VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 339 EMSLLYDVAHNVAKLEEHSIEGRKKEVYVHRKGATRAFPAGHPEVPSAYRDVGQPVLIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G+ + M +FGS CHGAGR +SRA +++ Q + LE+ GI++R
Sbjct: 399 SMGTPSFILCGSTESMDVSFGSACHGAGRVMSRAHAKKEFHGQSIKEDLEAHGITVRATH 458
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P ++ EEAP YK+ ++VV+ H +GI++K ++ P+ V KG
Sbjct: 459 PSVIAEEAPGVYKSSSEVVNVVHELGIARKVARVIPLGVAKG 500
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H +RL +F ++P GVGSK + ++L+ A G W++ GY D EHCE G
Sbjct: 135 HIKRLTDELFSNVPSGVGSKSRFKASDKELDSAFLEGAKWAVDAGYGVEADVEHCEGNGF 194
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ AD S VS +A+ RG PQ+
Sbjct: 195 LEGADTSHVSSKARNRGKPQL 215
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+RL +F ++P GVGSK + ++L+ A G W++ GY D EH E
Sbjct: 137 KRLTDELFSNVPSGVGSKSRFKASDKELDSAFLEGAKWAVDAGYGVEADVEHCE 190
>gi|170291020|ref|YP_001737836.1| hypothetical protein Kcr_1407 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175100|gb|ACB08153.1| protein of unknown function UPF0027 [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 485
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 184/282 (65%), Gaps = 6/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD IYD+ AA MGIE GQV M+H+GSRGFGHQVA D L M +
Sbjct: 204 SGNHFLEVQVVDRIYDEGAARVMGIEHEGQVVAMVHTGSRGFGHQVADDFLNIMMSKISS 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N + D++L A NS+ + + K + + H + +AF + F + +DL
Sbjct: 264 LNFKLPDKELIFAYANSDIAEKYFKAMKGAANYAWANRQMITHWVREAFERVFGRSAEDL 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M++IYDV+HNIAK EEH VDG++ + VHRKG+TR+FPP HP IP DY+ GQPV+I G
Sbjct: 324 RMNLIYDVAHNIAKLEEHEVDGRRVKVYVHRKGATRSFPPGHPAIPQDYREVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+ GT SY++ GTE+ M E+FG+T HGAGR +SR +++R +++ L +GI ++ AS
Sbjct: 384 SQGTASYLMAGTERAMSESFGTTAHGAGRVMSREQAKRVYRGSQIVQMLAERGIIVKPAS 443
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP +YK+V +VV+ H GI++ +L P+ V+KG
Sbjct: 444 LAVAAEEAPGAYKDVDEVVNATHKAGIARLVARLVPIGVVKG 485
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 56/85 (65%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F+++P G+GS G + ++ L++ + MG W++ +GY W D EHCE
Sbjct: 115 EVRPKLKQLVDALFENVPSGLGSSGKVRLSPGQLDDVIVMGAKWAVEQGYGWERDLEHCE 174
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G M ADP +S +AK+RGLPQ+
Sbjct: 175 EGGMMEGADPGVISRKAKERGLPQL 199
>gi|410722087|ref|ZP_11361402.1| hypothetical protein B655_1871 [Methanobacterium sp. Maddingley
MBC34]
gi|410597893|gb|EKQ52500.1| hypothetical protein B655_1871 [Methanobacterium sp. Maddingley
MBC34]
Length = 482
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V+EI+D AA G+ED GQV V+IHSGSRG GHQV +D L M+KA KR
Sbjct: 202 SGNHFLEVQKVEEIFDTDAAGTFGLED-GQVTVLIHSGSRGCGHQVCSDYLRTMDKAAKR 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
++ DRQLACA + S + + + T + +H + ++F + F+ +DL
Sbjct: 261 YQMDLPDRQLACAPVESEEAQDYFAAMAAAANYAWTNRQMIVHWVRESFEQVFHKDAEDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H + G++ L VHRKG+TRAF P +P DYQ GQPV I G
Sbjct: 321 GMGIVYDVAHNIAKKETHDIKGRKTQLYVHRKGATRAFGPGREELPADYQKIGQPVFIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SYVL GT+ M ETFGST HGAGR +SRA ++RN +++L LE +GI +R S
Sbjct: 381 TMGTSSYVLHGTQTAMDETFGSTAHGAGRQMSRAGAKRNYRGEDILKILEGKGIYVRANS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV T H GIS+ ++ P+ V KG
Sbjct: 441 MPVVAEEAPGAYKDVDQVVQTAHTAGISRLVGRMVPMGVAKG 482
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 57/93 (61%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + E + + L MF ++P GVGSKG I + ++++ L+ G W++ GY W
Sbjct: 105 LRTNLTFEEVQPRIKELIDVMFRNVPSGVGSKGKIRLKEGEIDDVLDNGARWAVENGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED E EE G M +AD ++VS +AKKRG+PQ+
Sbjct: 165 DEDLEFLEENGCMADADSARVSDKAKKRGIPQL 197
>gi|212223863|ref|YP_002307099.1| RNA terminal phosphate cyclase [Thermococcus onnurineus NA1]
gi|212008820|gb|ACJ16202.1| RNA terminal phosphate cyclase [Thermococcus onnurineus NA1]
Length = 479
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q++D IYD+ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 199 SGNHFLEVQVIDRIYDEEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRVMEKANRK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+L S + + + A F + H + ++F + F +D+
Sbjct: 258 YGVPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDM 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH VDGK+ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 318 EMTIVYDVAHNIAKVEEHEVDGKKVRVVVHRKGATRAFPAGHPDVPKAYRDVGQPVLIPG 377
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGSTCHGAGR LSR + R + N+L +G+ IR AS
Sbjct: 378 SMGTASYVLAGAEGSMKETFGSTCHGAGRLLSRKAATRQYRGDRLKNELLQKGVYIRAAS 437
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V +VV+ H GI+K ++RP+ V KG
Sbjct: 438 LRVVAEEAPGAYKSVDNVVNVVHEAGIAKLVARMRPMGVAKG 479
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ L++ L G W++ GY W +D EH E
Sbjct: 110 EVRPKIKELVDTLFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYGWKDDLEHLE 169
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP+ VS +AK+RG PQ+
Sbjct: 170 EGGRMEGADPNAVSQKAKQRGAPQL 194
>gi|126458767|ref|YP_001055045.1| hypothetical protein Pcal_0141 [Pyrobaculum calidifontis JCM 11548]
gi|126248488|gb|ABO07579.1| protein of unknown function UPF0027 [Pyrobaculum calidifontis JCM
11548]
Length = 484
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/284 (47%), Positives = 185/284 (65%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M++
Sbjct: 202 SGNHFLEIQVVDKIYDEKVAKTFGIEREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQ 261
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK EEH+VD G + + VHRKG+TRAFPP P IP Y+ GQPVLI
Sbjct: 321 GLELVYDVAHNIAKLEEHVVDDRGTVRKVWVHRKGATRAFPPGRPEIPAKYRDVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT + M+ TFG+ HGAGR LSR + R +V +L +GI +R
Sbjct: 381 PGSMGTASWILVGTPEAMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEELAKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+T H VG +KK + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVETAHQVGFAKKVVRQRPIGVVKG 484
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L ++F +P GVG G + ++ + E L G++W++++GY W
Sbjct: 105 LRTNLTEEEVRPKLKELVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED E+ EE G ADPSKVS +AK RG Q+
Sbjct: 165 AEDMEYIEERGSWKLADPSKVSEKAKARGRDQL 197
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 121 LVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIE 172
>gi|435850657|ref|YP_007312243.1| hypothetical protein Metho_0446 [Methanomethylovorans hollandica
DSM 15978]
gi|433661287|gb|AGB48713.1| hypothetical protein Metho_0446 [Methanomethylovorans hollandica
DSM 15978]
Length = 486
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 179/282 (63%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ VDEIYD AA G+ + GQ+ MIH GSRG GHQ+ TD L + +A ++
Sbjct: 206 SGNHFLEIQYVDEIYDTKAADAFGLHE-GQITFMIHCGSRGAGHQICTDHLRTLTQAAEK 264
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ D+QLACA +S++ + + A + T + MH + F F D+L
Sbjct: 265 YKIDLPDKQLACAPTDSSEAQNYFGAMVCAANYAWTNRQVIMHWAREVFQDFFRQDMDEL 324
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK E H +DGK++ + VHRKG+TRAFPP H +P Y+ GQPVLI G
Sbjct: 325 GMDLVYDVAHNVAKLETHKIDGKKREVYVHRKGATRAFPPEHSDVPAAYKKVGQPVLIPG 384
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GT M +FGS CHGAGR +SRA ++ +++ L GIS+R
Sbjct: 385 SMGTASYVLHGTHDAMDISFGSACHGAGRVMSRAHAKHEFRGEQIQKDLSKMGISVRATQ 444
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P L+ EEAP YK+ +DVVD H +GI++K +L P+ V+KG
Sbjct: 445 PALIAEEAPGVYKSSSDVVDVVHNLGIARKVARLMPIGVVKG 486
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L + +F +P GVGSK + +N L++ G W++ GY D E CE G M A
Sbjct: 125 LLERLFHAVPSGVGSKSRLRVNDDQLDDVFIHGSRWAVENGYGVPNDVERCESQGMMEGA 184
Query: 531 DPSKVSMRAKKRGLPQV 547
+VS RA++RG PQ+
Sbjct: 185 LVKQVSTRARQRGRPQL 201
>gi|242399527|ref|YP_002994952.1| hypothetical protein TSIB_1552 [Thermococcus sibiricus MM 739]
gi|242265921|gb|ACS90603.1| hypothetical protein TSIB_1552 [Thermococcus sibiricus MM 739]
Length = 938
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDEI+++ A G+ + GQ+ VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 658 SGNHFLEVQVVDEIFNEQIAKVYGLFE-GQIVVMVHTGSRGLGHQVASDYLRIMEKANRK 716
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
N+ DR+L + + + + A F + H + ++F + F +DL
Sbjct: 717 YNVPWPDRELVSVPFQTEEGQRYFSAMKGAANFAWANRQMITHWVRESFEEVFKQKAEDL 776
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M+V+YDV+HNIAK EEH VDG++ ++VHRKG+TRAFP H +P Y+ GQPVLI G
Sbjct: 777 EMNVVYDVAHNIAKVEEHEVDGRKVKVVVHRKGATRAFPAGHEAVPRAYRNVGQPVLIPG 836
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGSTCHGAGR LSR + R + N+L +GI I+ AS
Sbjct: 837 SMGTASYVLAGAEGSMRETFGSTCHGAGRVLSRHAATRQFRGDRLRNELMQRGIYIKAAS 896
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YKNV +VV H GI+ ++RP+ V KG
Sbjct: 897 MRVVAEEAPGAYKNVDNVVQVVHDAGIANLVARMRPIGVAKG 938
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ LE+ L G W++ GY W ED EH E
Sbjct: 569 EVRPRIKELVDTLFKNVPSGLGSKGRVRLHWTQLEDVLSDGAKWAVDNGYGWKEDLEHLE 628
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM A+ VS AK+RG PQ+
Sbjct: 629 ENGRMEGANSDAVSQTAKQRGAPQL 653
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F ++P G+GSKG + ++ LE+ L G W++ GY W ED EH E
Sbjct: 577 LVDTLFKNVPSGLGSKGRVRLHWTQLEDVLSDGAKWAVDNGYGWKEDLEHLE 628
>gi|20089164|ref|NP_615239.1| hypothetical protein MA0266 [Methanosarcina acetivorans C2A]
gi|19914035|gb|AAM03719.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 500
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEIYD+ AS G+E+ GQV VM+H GSRG GHQ+ TD L ++ +A+K+
Sbjct: 220 SGNHFLEVQYVDEIYDREVASAFGLEE-GQVTVMVHCGSRGAGHQICTDHLKELSQAVKK 278
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
IE D+QLACA S + + + A + + H ++F K F D++
Sbjct: 279 YGIEIPDKQLACAPAQSREAQNYFKAMLCAANYAWANRQMITHWTRESFEKVFGRDADEM 338
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEH ++G++K + VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 339 GMSLLYDVAHNVAKLEEHNIEGRKKEVYVHRKGATRAFPAGHPEVPAAYRDVGQPVLIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G + M +FGS CHGAGR +SRA +++ Q V LE+ GI++R
Sbjct: 399 SMGTPSFILCGAKDAMDVSFGSACHGAGRVMSRAHAKKEFRGQSVKENLEAHGITVRATH 458
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P ++ EEAP YK+ ++VV+ H +GI++K ++ P+ V KG
Sbjct: 459 PSVIAEEAPGVYKSSSEVVNVVHELGIARKVARVIPLGVAKG 500
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
++L +F ++P GVGSK + R+L+ A G W++ GY D EHCE G +
Sbjct: 136 IKKLTDELFTNVPAGVGSKSRFRASDRELDSAFLEGAKWAVDAGYGVDADVEHCEGNGYL 195
Query: 528 LNADPSKVSMRAKKRGLPQV 547
AD S VS +A+ RG PQ+
Sbjct: 196 EGADTSYVSTKARNRGKPQL 215
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
++L +F ++P GVGSK + R+L+ A G W++ GY D EH E
Sbjct: 137 KKLTDELFTNVPAGVGSKSRFRASDRELDSAFLEGAKWAVDAGYGVDADVEHCE 190
>gi|373459296|ref|ZP_09551063.1| protein of unknown function UPF0027 [Caldithrix abyssi DSM 13497]
gi|371720960|gb|EHO42731.1| protein of unknown function UPF0027 [Caldithrix abyssi DSM 13497]
Length = 484
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 166/458 (36%), Positives = 246/458 (53%), Gaps = 70/458 (15%)
Query: 22 RNSCRPGMVGGFL---PGVKQIANVAALPGIVGRSVGLPDVH--------SVPSTQW--- 67
R P M+ G L ++Q+ NVA LPGI S+ +PD+H V +T W
Sbjct: 29 RVYASPEMMEGLLEEQAPLQQVINVAHLPGIEKYSLAMPDIHWGYGFPIGGVAATDWQEG 88
Query: 68 ----------------LSDNTMRSSNIWKR---------SPLTLGAGNHYA-------EI 95
L+ ++R + KR + G G+ +A ++
Sbjct: 89 VISPGGVGYDINCGMRLATTSLREDEVKKRLDKLIQELFKAIPTGVGSSHAIKKLSKNDL 148
Query: 96 QIVDEIYDKW--------AASKMGIEDVGQV------CVMIHSGSRGFGHQVAT--AGNH 139
+ V + +W A IE+ G++ V + RG Q+ T +GNH
Sbjct: 149 KKVAQEGVQWVIQQGYGKAEDLEVIEEKGRMPFADFSAVSQRAIERGL-DQLGTLGSGNH 207
Query: 140 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIE 199
+ E+ +VD IYD+ AA+ +G+ + GQ+ V+IHSGSRGFG+Q+ D L M KA ++ +++
Sbjct: 208 FLEVDVVDRIYDEQAAAALGLFE-GQIVVLIHSGSRGFGYQICDDYLKVMSKAAQKYHLD 266
Query: 200 TNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
DRQLA A I S + + + A F + + M + F FN + +L ++
Sbjct: 267 LPDRQLAAAPIQSPEGQDYFAAMSCAANFAWSNRQVIMDLARRVFKHVFNISDANLQFNL 326
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHNIAK E H V ++KT+ VHRKG+TRA P HPL+P Y+ GQPVLI G MG
Sbjct: 327 VYDVSHNIAKKETHKVGDREKTVCVHRKGATRALAPGHPLLPEKYRAVGQPVLIPGDMGR 386
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
S+V GT+K M+ETFGSTCHGAGR LSR ++++ + ++ +L ++GI ++ V
Sbjct: 387 YSFVCIGTQKAMEETFGSTCHGAGRLLSRRQAKKAGAGRNLIKELSARGIVVQARGKATV 446
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EE PE+YK+V VV+ H GIS K +LRP+ VIKG
Sbjct: 447 AEEMPEAYKDVQSVVNVMHQSGISLKVARLRPIGVIKG 484
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHI- 426
ASP++ ME E + V++ H GI K + + + G + A + +
Sbjct: 32 ASPEM-MEGLLEEQAPLQQVINVAHLPGIEKYSLAMPDIHWGYGFPIGGVAATDWQEGVI 90
Query: 427 -PVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGS 485
P GVG D+ + + SLRE E K+ ++L Q +F IP GVGS
Sbjct: 91 SPGGVGY---------DINCGMRLATT-SLRED----EVKKRLDKLIQELFKAIPTGVGS 136
Query: 486 K-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGL 544
I ++ DL++ + G+ W +++GY AED E EE GRM AD S VS RA +RGL
Sbjct: 137 SHAIKKLSKNDLKKVAQEGVQWVIQQGYGKAEDLEVIEEKGRMPFADFSAVSQRAIERGL 196
Query: 545 PQV 547
Q+
Sbjct: 197 DQL 199
>gi|289522446|ref|ZP_06439300.1| RtcB protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504282|gb|EFD25446.1| RtcB protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 475
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 182/282 (64%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ++DEIYD+ A + G+ + GQV VMIH GSRG GHQV D + M +AM +
Sbjct: 199 SGNHFLEIQVIDEIYDENVARQFGL-NPGQVTVMIHCGSRGLGHQVCDDYIKVMLRAMNK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DRQL CA + S + K + A + ++ H++ + F F +
Sbjct: 258 YGISVPDRQLCCAPLKSEEAKQYLGAMQAAANYALANREIIGHLVREVFGDFFPKS---- 313
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+ ++YDVSHN+A E+H V+GKQ + VHRKG+TRAFPP HP +P Y+ GQPV+I G
Sbjct: 314 DLKLLYDVSHNMAHIEKHDVEGKQADVCVHRKGATRAFPPGHPSLPEKYRQVGQPVIIPG 373
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT++GM+E F STCHGAGR LSR + ++ +L +LE +GI + +
Sbjct: 374 SMGTESYILVGTKRGMEECFASTCHGAGRVLSRKAAMKSEKADTILKRLEDRGIKVMAET 433
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EE PE+YK+V+ VVD GIS+K +LRP+AVIKG
Sbjct: 434 IGTVREEIPEAYKDVSRVVDVVEKAGISRKVARLRPLAVIKG 475
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 449 MGMDWS--LREGYIWAEDKE---HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMG 503
+G D S +R + E+KE + L ++F +P GVGSKG + ++ +L L G
Sbjct: 91 VGYDISCGVRVMLTFIEEKEVASCIDELTAALFSRVPSGVGSKGALKISETELLSVLAKG 150
Query: 504 MDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
W++++GY +ED E EE G + +A+P VS +A +RG PQ+
Sbjct: 151 ALWAVKKGYGRSEDLECIEERGTLPHANPDAVSKKAIERGKPQL 194
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F +P GVGSKG + ++ +L L G W++++GY +ED E E
Sbjct: 116 DELTAALFSRVPSGVGSKGALKISETELLSVLAKGALWAVKKGYGRSEDLECIE 169
>gi|374629749|ref|ZP_09702134.1| protein of unknown function UPF0027 [Methanoplanus limicola DSM
2279]
gi|373907862|gb|EHQ35966.1| protein of unknown function UPF0027 [Methanoplanus limicola DSM
2279]
Length = 482
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 190/282 (67%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ VDEI+D AA K G+ + Q+C+MIH GSRG GHQV TD L +E A K+
Sbjct: 204 SGNHFLEIQSVDEIFDDEAAEKFGLV-MDQICIMIHCGSRGLGHQVCTDHLKDLEAASKK 262
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ D QLACA + S + KA+ + + + H++ + K + D++
Sbjct: 263 YKIKLPDSQLACAPLKSPEGKAYLSAMAASANYAWANRQIITHLVREIICKSPDIEYDEI 322
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDV+HN+AK EEH+VDG+++TL VHRKG+TRAF P P +P + + TGQPVLI G
Sbjct: 323 KL--VYDVTHNVAKFEEHIVDGEKQTLCVHRKGATRAFGPGSPGLPPELESTGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTEK M+ TFGSTCHG+GR +SR++++++ + E+ +L +G+ +R S
Sbjct: 381 SMGTPSYVLKGTEKAMECTFGSTCHGSGRIMSRSQAKKSSEGAEIKEELAGKGVYVRATS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K++ EE+P++YK+ ++VV H G+S K KL P+ VIKG
Sbjct: 441 NKVIAEESPKAYKSSSEVVRIVHNAGLSLKVAKLTPMGVIKG 482
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
+ +FD +P GVG+K + ++ ++LE+ + G W++ GY +D CE+ G + A
Sbjct: 123 IINQLFDTVPTGVGNKSALRLSEKELEDVMLEGAGWAVNNGYGTKDDIIRCEDGGCLGGA 182
Query: 531 DPSKVSMRAKKRGLPQ 546
D VS +A++RG+PQ
Sbjct: 183 DTEYVSRKARQRGMPQ 198
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 15/60 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G F+++D L + + E V+Q+ANVA +PGIV S+ +PDVH
Sbjct: 28 MRVPGKFYLSDTLSESLEE---------------GAVRQLANVATMPGIVKYSLAMPDVH 72
>gi|150400572|ref|YP_001324338.1| hypothetical protein Maeo_0134 [Methanococcus aeolicus Nankai-3]
gi|150013275|gb|ABR55726.1| protein of unknown function UPF0027 [Methanococcus aeolicus
Nankai-3]
Length = 963
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ +D ++D+ A G+E QV ++IH+GSRG GHQ+ D L MEKA ++
Sbjct: 683 SGNHFLEIQYMDTVFDEEVAKIYGVEK-NQVVILIHTGSRGLGHQICADYLRYMEKAARK 741
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DRQLACA I S + + + K + T L H I ++F F T+ +DL
Sbjct: 742 YNITLPDRQLACAPITSEEGQNYFKAMSCGANYAWTNRQLITHWIRESFEDIFKTSAEDL 801
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M+++YDV+HNIAK E H ++GK K ++VHRKG+TRAF P + IP Y GQPV+I G
Sbjct: 802 EMNILYDVAHNIAKKENHTINGKMKKVVVHRKGATRAFGPDNEDIPAKYNTVGQPVIIPG 861
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GT M+ETFGST HGAGR +SRAK+ + +++++ L +GI + S
Sbjct: 862 DMGTSSYLMHGTNTAMEETFGSTAHGAGRIMSRAKALKMYKSEDIISDLGKKGILVMADS 921
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EE PESYKN+ V D H GIS K K++P+ V+KG
Sbjct: 922 KGVVAEECPESYKNIEFVADVVHNSGISLKVCKMKPMGVVKG 963
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ L +F ++P G+GSKG I +N +EE LE G++W++ Y W ED ++ EE G+M
Sbjct: 600 KELLSKIFKNVPSGLGSKGKIRINKNQIEEVLEEGVNWAINNNYGWEEDIKYIEENGQMK 659
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD S VS AKKRGLPQ+
Sbjct: 660 EADASLVSDSAKKRGLPQL 678
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ L +F ++P G+GSKG I +N +EE LE G++W++ Y W ED ++ E Q
Sbjct: 600 KELLSKIFKNVPSGLGSKGKIRINKNQIEEVLEEGVNWAINNNYGWEEDIKYIEENGQ 657
>gi|407463077|ref|YP_006774394.1| hypothetical protein NKOR_07955 [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046699|gb|AFS81452.1| hypothetical protein NKOR_07955 [Candidatus Nitrosopumilus
koreensis AR1]
Length = 482
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ V EI+D+ AA+KMGI++ G + V+IH GSRGFGHQV +D L E+AM +
Sbjct: 202 SGNHFLEIQKVTEIHDEEAAAKMGIKE-GTITVLIHCGSRGFGHQVCSDYLRVSEQAMGK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LAC +S + +++ K F + + H +F + FN T DL
Sbjct: 261 YGIDLPDRELACVPNSSEEGESYRKAMFAALNFAWSNRQMITHWTRKSFERVFNQTESDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM ++YDV+HNIAK E+H V+G+++ L+VHRKG+TRAFP + IP+ Y+ GQPVL+ G
Sbjct: 321 DMKLVYDVAHNIAKVEKHKVNGEERKLVVHRKGATRAFPANRDEIPLKYRHLGQPVLVPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M +FGST HGAGR +SR+K+RRN +V L +GI I+ +
Sbjct: 381 SMGTSSWILLGKPNSMNLSFGSTAHGAGRTMSRSKARRNYTENDVKKSLNDKGIFIKALT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V VVD H +GI+ K KL P+ VIKG
Sbjct: 441 RDGVVEETPQAYKDVDAVVDVSHNLGIATKVAKLVPIGVIKG 482
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 32/168 (19%)
Query: 412 IYLNERLAQSMFD-----------HIPVGVGSKGIIP------------MNARDLEEAL- 447
IY NE L + M IP VG ++P + A D EE +
Sbjct: 30 IYANEALLEKMLSDRTIMQARNVSSIPGIVGHSVVLPDGHEGYGFPVGGVAAMDAEEGMI 89
Query: 448 ---EMGMDWS-----LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEA 499
+G D + LR + + L +F IP GVGSKG + ++ +L+E
Sbjct: 90 SPGGVGYDINCGVRLLRSNLTEQTVRSKLKELVTDLFSSIPSGVGSKGAVKLSHSELDEV 149
Query: 500 LEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
L G++W++ GY + D + CEE G++ NADP+KVS +A+KRG PQ+
Sbjct: 150 LVKGVNWAIDHGYGSSNDSDVCEENGQIQNADPNKVSDKARKRGAPQL 197
>gi|405963892|gb|EKC29424.1| UPF0027 protein C22orf28-like protein [Crassostrea gigas]
Length = 643
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/301 (51%), Positives = 177/301 (58%), Gaps = 70/301 (23%)
Query: 105 WAASKMGIEDVGQVCVMIH------SGSRGFGHQVATAG--NHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ H + RG Q+ T G NHYAEIQ+VDEIY+K+AA
Sbjct: 395 WAEDKEHCEEYGRMLQADHGKVSSRAKKRGLP-QLGTLGASNHYAEIQVVDEIYNKFAAK 453
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KM S R ALV MEKAMKRDNI NDRQL CA+I + +
Sbjct: 454 KMA------------SSVRD------RYALVAMEKAMKRDNINVNDRQLVCAKIYFPEGQ 495
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK F++T DDLDM +IYDVSHNIAK EEH VD
Sbjct: 496 DYLKGMEAAANYAWVNRSSMTFLCRQAFAKMFDSTADDLDMFMIYDVSHNIAKVEEHFVD 555
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GKQKTLLVHRKGSTRAFPPHHPLIPVDYQ
Sbjct: 556 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQ------------------------------- 584
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
GR LSRAKSRRNLDY EVL+ LE +GISIRVASPKLVMEEAPESYKNVTDVVDT
Sbjct: 585 ------GRVLSRAKSRRNLDYTEVLSALEEKGISIRVASPKLVMEEAPESYKNVTDVVDT 638
Query: 391 C 391
C
Sbjct: 639 C 639
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 32/37 (86%)
Query: 511 GYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
GY WAEDKEHCEEYGRML AD KVS RAKKRGLPQ+
Sbjct: 392 GYAWAEDKEHCEEYGRMLQADHGKVSSRAKKRGLPQL 428
>gi|145590437|ref|YP_001152439.1| hypothetical protein Pars_0172 [Pyrobaculum arsenaticum DSM 13514]
gi|145282205|gb|ABP49787.1| protein of unknown function UPF0027 [Pyrobaculum arsenaticum DSM
13514]
Length = 498
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 183/284 (64%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M++
Sbjct: 216 SGNHFLEIQVVDKIYDEKVAKLFGIEREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQ 275
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 276 WGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 334
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK EEH+VD G K + VHRKG+TRAFPP P IP Y+ GQPVLI
Sbjct: 335 GLEIVYDVAHNIAKLEEHVVDEKGTVKKVWVHRKGATRAFPPGRPEIPAKYREVGQPVLI 394
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 395 PGSMGTASWILVGTHDSMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMSKRGIIVRS 454
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+ H VG ++K + RP+ V+KG
Sbjct: 455 AETEVISEEAPWAYKDVDRVVEAAHQVGFARKVVRQRPIGVVKG 498
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L ++F +P GVG G + ++ + E L G++W++++GY W
Sbjct: 119 LRTNLTEQEVRPKLKELVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGW 178
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED E+ EE G ADPSKVS +AK RG Q+
Sbjct: 179 AEDMEYIEERGSWKLADPSKVSEKAKARGRDQL 211
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 133 KELVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIE 186
>gi|379005269|ref|YP_005260941.1| hypothetical protein Pogu_2307 [Pyrobaculum oguniense TE7]
gi|375160722|gb|AFA40334.1| hypothetical protein Pogu_2307 [Pyrobaculum oguniense TE7]
Length = 484
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 183/284 (64%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M++
Sbjct: 202 SGNHFLEIQVVDKIYDEKVAKLFGIEREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQ 261
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK EEH+VD G K + VHRKG+TRAFPP P IP Y+ GQPVLI
Sbjct: 321 GLEIVYDVAHNIAKLEEHVVDEKGTVKKVWVHRKGATRAFPPGRPEIPAKYREVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 381 PGSMGTASWILVGTHDSMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMSKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+ H VG ++K + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVEAAHQVGFARKVVRQRPIGVVKG 484
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ EE
Sbjct: 115 RPKLKELVDTIFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEER 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G ADPSKVS +AK RG Q+
Sbjct: 175 GSWKLADPSKVSEKAKARGRDQL 197
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 121 LVDTIFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIE 172
>gi|93140730|sp|O27634.2|RTCB_METTH RecName: Full=tRNA-splicing ligase RtcB
Length = 482
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDEI+D+ AA G+ G+V VMIHSGSRG GHQ+ +D L M+KA +R
Sbjct: 202 SGNHFLEVQMVDEIFDEEAARVYGVSP-GKVAVMIHSGSRGCGHQICSDYLRLMDKAYRR 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA ++S++ + + + + +H + ++F F T +D+
Sbjct: 261 YKINIPDRQLACAPVDSDEALDYFQAMAAAANYAWANRQMIVHWVRESFEAVFGMTAEDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H + G++ + VHRKG+TRAF P IP +Y+ GQPV+I G
Sbjct: 321 EMEIVYDVAHNIAKKEVHTIKGRETEVFVHRKGATRAFGPGRDEIPQEYRKIGQPVIIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SY+L GTE M+ETFGST HGAGR +SRA +++ +EV KLES+GI +R S
Sbjct: 381 TMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTYRGEEVQRKLESEGIYVRATS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV T H GIS+ ++ P+ V KG
Sbjct: 441 MPVVAEEAPGAYKDVDVVVRTAHETGISRLVARMLPLGVAKG 482
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F ++P GVGSKG I + +++E LE G +W++ GY W +D EE G+M
Sbjct: 118 IKELINTLFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKM 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
+A KVS +AKKRG+PQ+
Sbjct: 178 EDASSEKVSEKAKKRGIPQL 197
>gi|15679592|ref|NP_276709.1| hypothetical protein MTH1597 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622721|gb|AAB86070.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 488
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDEI+D+ AA G+ G+V VMIHSGSRG GHQ+ +D L M+KA +R
Sbjct: 208 SGNHFLEVQMVDEIFDEEAARVYGVSP-GKVAVMIHSGSRGCGHQICSDYLRLMDKAYRR 266
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA ++S++ + + + + +H + ++F F T +D+
Sbjct: 267 YKINIPDRQLACAPVDSDEALDYFQAMAAAANYAWANRQMIVHWVRESFEAVFGMTAEDM 326
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H + G++ + VHRKG+TRAF P IP +Y+ GQPV+I G
Sbjct: 327 EMEIVYDVAHNIAKKEVHTIKGRETEVFVHRKGATRAFGPGRDEIPQEYRKIGQPVIIPG 386
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SY+L GTE M+ETFGST HGAGR +SRA +++ +EV KLES+GI +R S
Sbjct: 387 TMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTYRGEEVQRKLESEGIYVRATS 446
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV T H GIS+ ++ P+ V KG
Sbjct: 447 MPVVAEEAPGAYKDVDVVVRTAHETGISRLVARMLPLGVAKG 488
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F ++P GVGSKG I + +++E LE G +W++ GY W +D EE G+M
Sbjct: 124 IKELINTLFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKM 183
Query: 528 LNADPSKVSMRAKKRGLPQV 547
+A KVS +AKKRG+PQ+
Sbjct: 184 EDASSEKVSEKAKKRGIPQL 203
>gi|343484258|dbj|BAJ49912.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 962
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 195/317 (61%), Gaps = 10/317 (3%)
Query: 104 KWAASKMG-IEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGI 160
++ + K G I D V + +RG Q+ T +GNH+ EIQ VD+IYD AA MGI
Sbjct: 647 RYPSYKAGNIPDPDPSIVSREAKARG-ESQIGTLGSGNHFLEIQRVDKIYDPRAAKAMGI 705
Query: 161 EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAK 220
GQ+ V+IH GSRG+GHQ+ +D L ME+A+ + N+ DR+LAC NS + + K
Sbjct: 706 TQEGQITVLIHCGSRGYGHQICSDFLRIMERAVAKYNLRLPDRELACTPANSPEATQYLK 765
Query: 221 QFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 274
F + H + +F + F + DD+ M ++YDV HN+ K E+H VDG
Sbjct: 766 AFGCAVNFAFANRQAISHWVRQSFEQVFKRSADDMGMQIVYDVCHNVLKFEKHKVDGSDV 825
Query: 275 TLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH 334
+ VHRKG+TR+FP HPLIP Y+ GQPVLI G+MGT S+VL G EK M +FGST H
Sbjct: 826 DVFVHRKGATRSFPAGHPLIPQVYREIGQPVLIPGSMGTASWVLLGNEKAMTLSFGSTAH 885
Query: 335 GAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAV 394
GAGR +SR+ ++R +VL +LES+GI ++ S + V+EE +YK+V +VV+ H V
Sbjct: 886 GAGREMSRSGAKRRYRGDQVLRELESRGIYVKGDSMETVVEEVDAAYKSVDEVVEVSHQV 945
Query: 395 GISKKTFKLRPVAVIKG 411
GI K +L P+ V+KG
Sbjct: 946 GIGTKVARLVPIGVVKG 962
>gi|390962133|ref|YP_006425967.1| hypothetical protein CL1_1978 [Thermococcus sp. CL1]
gi|390520441|gb|AFL96173.1| hypothetical protein CL1_1978 [Thermococcus sp. CL1]
Length = 960
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 680 SGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 738
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+L + + + + A F + H + ++F + F +D+
Sbjct: 739 YGVPWPDRELVSVPFQTEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDM 798
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH VDGK+ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 799 EMSIVYDVAHNIAKVEEHEVDGKRVKVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPG 858
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGS+CHGAGR LSR + R + ++L +GI +R AS
Sbjct: 859 SMGTASYVLAGAEGSMRETFGSSCHGAGRLLSRKAATRQYRGDRLKSELARRGIYVRAAS 918
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V +VV+ H GI+K ++RP+ V KG
Sbjct: 919 LRVVAEEAPGAYKSVDNVVNVVHQAGIAKLVARMRPMGVAKG 960
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ L++ L G W++ GY W ED EH E
Sbjct: 591 EVRPRIKELVDTLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLE 650
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP+ VS +AK+RG PQ+
Sbjct: 651 EGGRMEGADPNAVSQKAKQRGAPQL 675
>gi|315425419|dbj|BAJ47083.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 962
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 183/288 (63%), Gaps = 8/288 (2%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ EIQ VD+IYD AA MGI GQ+ V+IH GSRG+GHQ+ +D L M
Sbjct: 675 QIGTLGSGNHFLEIQRVDKIYDPRAAKAMGITQEGQITVLIHCGSRGYGHQICSDFLRIM 734
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
E+A+ + N+ DR+LAC +S + + K F + H + +F + F
Sbjct: 735 ERAVAKYNLRLPDRELACTPASSPEATQYLKAFGCAVNFAFANRQAISHWVRQSFEQVFK 794
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
+ DD+ M ++YDV HNI K E+H VDG + VHRKG+TR+FP HPLIP Y+ GQ
Sbjct: 795 RSADDMGMQIVYDVCHNIVKLEKHKVDGSDVDVFVHRKGATRSFPAGHPLIPQVYREIGQ 854
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVLI G+MGT S+VL G EK M +FGST HGAGR +SR+ ++R +VL +LES+GI
Sbjct: 855 PVLIPGSMGTASWVLLGNEKAMTLSFGSTAHGAGREMSRSGAKRRYRGDQVLRELESRGI 914
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ S + V+EE +YK+V +VV+ H VGI K +L P+ V+KG
Sbjct: 915 YVKGDSMETVVEEVDAAYKSVDEVVEVSHQVGIGTKVARLVPIGVVKG 962
>gi|91774130|ref|YP_566822.1| hypothetical protein Mbur_2207 [Methanococcoides burtonii DSM 6242]
gi|91713145|gb|ABE53072.1| UPF0027-domain protein [Methanococcoides burtonii DSM 6242]
Length = 486
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 192/306 (62%), Gaps = 12/306 (3%)
Query: 114 DVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIH 171
DVG + + R Q T +GNH+ E+Q VD+IYD+ AA G+E+ GQV MIH
Sbjct: 185 DVGNISIKARKRGR---PQAGTLGSGNHFLEVQYVDKIYDQEAADAFGLEE-GQVSFMIH 240
Query: 172 SGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTT 225
GSRG GHQ+ TD + M +A K+ I+ D+QLACA S + + + A +
Sbjct: 241 CGSRGTGHQICTDNIKTMSQASKKYGIQLPDKQLACAPAQSEEAQNYFGSMICAANYAWN 300
Query: 226 PDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTR 285
+ H D A F + D+L + ++YDV+HN+AK EEH VDGK+K + VHRKG+TR
Sbjct: 301 NRQMITHWTRDVIADTFRSDIDELGLELVYDVAHNVAKLEEHEVDGKKKNVYVHRKGATR 360
Query: 286 AFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKS 345
AFP H +P+ Y+ GQPVLI G+MGT SYVL G ++ M +FGS CHGAGR +SR+ +
Sbjct: 361 AFPKGHKEVPLKYRDVGQPVLIPGSMGTASYVLHGGDRSMDISFGSACHGAGRVMSRSHA 420
Query: 346 RRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRP 405
++ +++ +LE +GI++R A P ++ EEAP YK+ +DVV+ H + I++K K+ P
Sbjct: 421 KKEFQGEDIKMQLEKRGITVRSAHPAVIAEEAPGVYKSSSDVVNVVHELDIARKVAKMMP 480
Query: 406 VAVIKG 411
+ VIKG
Sbjct: 481 MGVIKG 486
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + + L + MF+ +P GVGSK + + +L++ G W++ GY
Sbjct: 109 LRSNLTVDDVRPKMKELTEKMFEAVPSGVGSKSRLKVTDSELDDIFLHGSKWAVENGYGE 168
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ 546
D EHCE G + D +S++A+KRG PQ
Sbjct: 169 KTDLEHCEGGGCIEGGDVGNISIKARKRGRPQ 200
>gi|408382456|ref|ZP_11180000.1| hypothetical protein A994_08371 [Methanobacterium formicicum DSM
3637]
gi|407814811|gb|EKF85434.1| hypothetical protein A994_08371 [Methanobacterium formicicum DSM
3637]
Length = 480
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 181/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V+EI+D AA G+E GQV V+IHSGSRG GHQV +D L M+KA K
Sbjct: 200 SGNHFLEVQKVEEIFDAEAARTFGLE-TGQVTVLIHSGSRGCGHQVCSDYLRTMDKAAKH 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
++ DRQLACA + S + + + T + +H + ++F + F+ +D+
Sbjct: 259 YKLDLPDRQLACAPVESEEAQDYFAAMAAAANYAWTNRQMIVHWVRESFEQVFHKDAEDM 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H + G+ L VHRKG+TRAF P IP DY+ GQPVLI G
Sbjct: 319 GMGIVYDVAHNIAKKETHTIKGRNTQLYVHRKGATRAFGPGREEIPSDYRKIGQPVLIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SYVL GT+ M ETFGST HGAGR +SRA ++RN +++L LE +GI +R S
Sbjct: 379 TMGTSSYVLHGTQTAMDETFGSTAHGAGRQMSRAGAKRNYRGEDILKILEGKGIYVRANS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV T H GIS+ ++ P+ V KG
Sbjct: 439 MPVVAEEAPGAYKDVDQVVQTAHTAGISRLVGRMVPMGVAKG 480
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + E + + L MF ++P GVGSKG I + ++++ L+ G W++ GY W
Sbjct: 103 LRTNLTYEEVQPRIKELIDVMFRNVPSGVGSKGKIRLKKGEIDDVLDNGARWAVENGYGW 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED E+ EE G M++AD ++VS +AKKRG+PQ+
Sbjct: 163 EEDLEYLEENGCMVDADSARVSDKAKKRGIPQL 195
>gi|407465449|ref|YP_006776331.1| hypothetical protein NSED_07985 [Candidatus Nitrosopumilus sp. AR2]
gi|407048637|gb|AFS83389.1| hypothetical protein NSED_07985 [Candidatus Nitrosopumilus sp. AR2]
Length = 482
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EI+D+ AA +MGIE+ G + +IH GSRGFGHQV +D L E+AM++
Sbjct: 202 SGNHFLEVQKVSEIHDEEAAKRMGIEE-GTITTLIHCGSRGFGHQVCSDYLRVSEQAMEK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+LAC NS + +++ K F + + H ++F + FN + DL
Sbjct: 261 YGINLPDRELACVPNNSEEGESYRKAMFSALNFAWSNRQMLTHWTRNSFQRVFNQSESDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E+H VDGK + L+VHRKG+TRAFP + IP+ Y+ GQPVL+ G
Sbjct: 321 EMKLVYDVAHNIAKVEKHKVDGKDRNLVVHRKGATRAFPANRSEIPLKYRDLGQPVLVPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M +FGST HGAGR +SR+K+R+N V L +GI I+ +
Sbjct: 381 SMGTASWILLGQPNSMNLSFGSTAHGAGRTMSRSKARKNFTEDNVKKSLNEKGIFIKALT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V VV+ H +GI+ K KL P+ VIKG
Sbjct: 441 RDGVVEETPQAYKDVDSVVNVSHNLGIATKVAKLVPIGVIKG 482
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L +F IP GVGSKG + + +L+E L G++W++ GY ++D + CEE
Sbjct: 115 RSKLKELVTDLFSSIPSGVGSKGAVKLTHSELDEVLVKGVNWAIDHGYGSSDDADVCEEN 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G++ NADP+KVS +A+KRG PQ+
Sbjct: 175 GQIQNADPNKVSDKARKRGAPQL 197
>gi|336477603|ref|YP_004616744.1| hypothetical protein [Methanosalsum zhilinae DSM 4017]
gi|335930984|gb|AEH61525.1| protein of unknown function UPF0027 [Methanosalsum zhilinae DSM
4017]
Length = 490
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD IYD AAS G+E+ GQV +M+H GSRG GHQ+ TD L + +++K
Sbjct: 210 SGNHFLEVQYVDNIYDNDAASVFGLEE-GQVTIMVHCGSRGAGHQICTDHLRVLSQSVKN 268
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I D+QLACA S + + + K + + H + F + F + L
Sbjct: 269 YGISIPDKQLACAPATSTEAQDYFKAMACAANYAWANRQIITHWTREVFEQVFGRDAESL 328
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEH++DG++K + VHRKG+TRAFPP H +P Y+ GQPVL+ G
Sbjct: 329 GMDLVYDVAHNVAKLEEHIIDGRKKKVYVHRKGATRAFPPGHSEVPRKYRDIGQPVLLPG 388
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ S+VL GT++GM TFGS CHG+GRA+SR +++ ++V KLE GI + S
Sbjct: 389 SMGSASFVLHGTQEGMDLTFGSACHGSGRAMSRKQAKGTYSGEDVKKKLEKMGIYVEAMS 448
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P ++ EEAPE YK +DVVD H +GI++K ++ P+ V KG
Sbjct: 449 PAVIAEEAPEVYKKSSDVVDVVHELGIARKVARVLPMGVAKG 490
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L + +F+ +P G+GSK + + +L++A G W++ GY D EHCE G + A
Sbjct: 129 LIKKLFEAVPSGLGSKSRLRASDSELDDAFVHGSRWAVEAGYGVEADIEHCEGSGFIEGA 188
Query: 531 DPSKVSMRAKKRGLPQV 547
DPSKVS +A+KRG PQ+
Sbjct: 189 DPSKVSAKARKRGKPQL 205
>gi|171184641|ref|YP_001793560.1| hypothetical protein Tneu_0157 [Pyrobaculum neutrophilum V24Sta]
gi|170933853|gb|ACB39114.1| protein of unknown function UPF0027 [Pyrobaculum neutrophilum
V24Sta]
Length = 484
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 184/284 (64%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+I+D+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M+R
Sbjct: 202 SGNHFLEIQVVDKIFDEKIAKTFGIEREGQVVVMIHTGSRGFGHQVATDYLLVMERNMRR 261
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLKDRVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK EEH+VD G + + VHRKG+TRAFPP IP Y+ GQPVLI
Sbjct: 321 GLEIVYDVAHNIAKLEEHVVDDKGTVRKVWVHRKGATRAFPPGRQEIPAKYRQVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT + M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 381 PGSMGTASWILVGTPEAMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMAKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+T H VG +KK + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVETAHQVGFAKKVVRQRPIGVVKG 484
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L ++F +P GVG G + ++ + E L G++W++++GY W
Sbjct: 105 LRTNLTEEEVRPKLKELVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED E+ EE G ADPSKVS +AK RG Q+
Sbjct: 165 AEDMEYIEERGSWKLADPSKVSEKAKARGRDQL 197
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 121 LVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIE 172
>gi|386875104|ref|ZP_10117300.1| hypothetical protein BD31_I1255 [Candidatus Nitrosopumilus salaria
BD31]
gi|386807089|gb|EIJ66512.1| hypothetical protein BD31_I1255 [Candidatus Nitrosopumilus salaria
BD31]
Length = 482
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EI+D+ AA++MGI++ G + V+IH GSRGFGHQV +D L E+AM++
Sbjct: 202 SGNHFLEVQKVAEIHDEEAANRMGIKE-GTITVLIHCGSRGFGHQVCSDYLRVSEQAMEK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DR+LAC S + +++ K F + + H ++F + FN + DL
Sbjct: 261 YNIHLPDRELACVPNTSEEGESYRKAMFAALNFAWSNRQMITHWTRNSFERVFNQSESDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM ++YDV+HNIAK E+H VDGK++ L++HRKG+TRAFP + IP+ Y+ GQPVL+ G
Sbjct: 321 DMKLVYDVAHNIAKVEKHKVDGKERKLVIHRKGATRAFPANRDEIPLKYRDLGQPVLVPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M +FGST HGAGR +SR+K+RR+ +V L +GI I+ +
Sbjct: 381 SMGTASWILLGKPNSMNLSFGSTAHGAGRTMSRSKARRDFTEADVKKSLNDKGIFIKALT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V VV+ H +GI+ K KL P+ VIKG
Sbjct: 441 RDGVVEETPDAYKDVDAVVNVSHNLGIATKVAKLVPIGVIKG 482
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L +F IP GVGSKG + + +L+E L G++W++ GY + D + CEE
Sbjct: 115 RSKLKELVTDLFSSIPSGVGSKGAVKLTHSELDEVLVNGVNWAIEHGYGSSNDSDVCEEN 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G++ NADP+KVS +A+KRG PQ+
Sbjct: 175 GQIKNADPNKVSDKARKRGAPQL 197
>gi|159042419|ref|YP_001541671.1| hypothetical protein Cmaq_1864 [Caldivirga maquilingensis IC-167]
gi|157921254|gb|ABW02681.1| protein of unknown function UPF0027 [Caldivirga maquilingensis
IC-167]
Length = 484
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 167/441 (37%), Positives = 238/441 (53%), Gaps = 67/441 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH-----------SVPSTQW------------------ 67
++Q ANVA LPG+ S+ LPD H +V S Q
Sbjct: 45 LEQAANVACLPGVYKYSIALPDAHQGYGFPVGGVAAVDSNQGTISPGGIGYDINCGVRVL 104
Query: 68 ---LSDNTMRS------SNIWKRSPLTLG-AGNHYAEIQIVDEIYDK-----------WA 106
L++N +R + I++ +P +G G + + ++++ D+ W
Sbjct: 105 RTDLTENEVRPRLRELVNTIFELAPAGVGETGKLHLPVSELNKVLDEGVDWAIRNGYGWT 164
Query: 107 ASKMGIEDVGQ------VCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKM 158
K IE G V + RG ++ T +GNH+ EIQ+VD+I++ A
Sbjct: 165 DDKEYIEQNGSWDFADSSKVSQRAKERG-KDEIGTIGSGNHFIEIQVVDKIFNPDVAKVF 223
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
GIE GQV VMIHSGSRG GHQVATD + E M++ + DR+LA + + + + +
Sbjct: 224 GIEKEGQVLVMIHSGSRGLGHQVATDYIKVAESKMRQWGLYLPDRELAALPLTAREAQDY 283
Query: 219 AKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD-- 270
T L MH + ++F + F PD L M +IYDV+HNIAK EEH+VD
Sbjct: 284 LHAMAAAANYAWTNRHLLMHWVRESFKRVFGRDPDKLGMRIIYDVAHNIAKFEEHVVDDE 343
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
G + + VHRKG+TRAFP IP Y+ GQPVLI G+MGT SY+L G EK MQ TFG
Sbjct: 344 GHRAKVWVHRKGATRAFPAGREEIPKVYRGIGQPVLIPGSMGTGSYILVGFEKSMQLTFG 403
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+ HGAGR +SR+ + R+L +V LES+GI IR A +++ EEAPE+YKNV V +
Sbjct: 404 TAPHGAGRQMSRSAAVRSLPPSKVKAALESRGIIIRSAESEIISEEAPEAYKNVDVVAEV 463
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
A+G++KK ++RP+ V+KG
Sbjct: 464 SDALGLAKKVVRMRPIGVVKG 484
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + L ++F+ P GVG G + + +L + L+ G+DW++R GY W
Sbjct: 104 LRTDLTENEVRPRLRELVNTIFELAPAGVGETGKLHLPVSELNKVLDEGVDWAIRNGYGW 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRG 543
+DKE+ E+ G AD SKVS RAK+RG
Sbjct: 164 TDDKEYIEQNGSWDFADSSKVSQRAKERG 192
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
L ++F+ P GVG G + + +L + L+ G+DW++R GY W +DKE+ E+
Sbjct: 120 LVNTIFELAPAGVGETGKLHLPVSELNKVLDEGVDWAIRNGYGWTDDKEYIEQ 172
>gi|229582217|ref|YP_002840616.1| hypothetical protein YN1551_1606 [Sulfolobus islandicus Y.N.15.51]
gi|228012933|gb|ACP48694.1| protein of unknown function UPF0027 [Sulfolobus islandicus
Y.N.15.51]
Length = 482
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQVA+D L ME+AMK+
Sbjct: 202 AGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQVASDYLQIMERAMKK 261
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DR+LA S + + A F T L H I ++F + F P+ L
Sbjct: 262 YNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWIRESFGRVFGVDPEKL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D++++YDV+HNIAK EE++++GK+K +LVHRKG+TRAFPP P IP D++ GQ VLI G
Sbjct: 322 DLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ L +GI +R A+
Sbjct: 382 SMGTASYVMAGIPEG-RRTWFTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 441 RRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVTKG 482
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K +L + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W
Sbjct: 105 LRTNLDYEDVKPKLAQLVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED H E++G ADPSKVS AK+RG Q+
Sbjct: 165 KEDMNHMEQHGSWELADPSKVSPIAKQRGASQL 197
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
+L + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E+
Sbjct: 120 QLVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQ 173
>gi|392407730|ref|YP_006444338.1| hypothetical protein Anamo_1406 [Anaerobaculum mobile DSM 13181]
gi|390620866|gb|AFM22013.1| hypothetical protein Anamo_1406 [Anaerobaculum mobile DSM 13181]
Length = 475
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 182/282 (64%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ++DEIYD+ A + G+ ++GQV VMIH GSRG GHQV D + M +AM +
Sbjct: 199 SGNHFLEIQVIDEIYDENVARRFGL-NLGQVTVMIHCGSRGLGHQVCDDYIKVMLRAMTK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQL CA + S + + + A + ++ H++ D F + F
Sbjct: 258 YGIKVPDRQLCCAPLKSQEAREYLGAMQAAANYALANREIIGHMVRDVFLRFFPKA---- 313
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++ ++YDVSHN+A E+H +DG + VHRKG+TRAFPP HP +P Y+ GQPV+I G
Sbjct: 314 ELKLLYDVSHNMAHIEKHELDGVIMDVCVHRKGATRAFPPDHPSLPEKYRPVGQPVIIPG 373
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT++GM+E F STCHGAGR LSR + ++ D VL +LE +GI +
Sbjct: 374 SMGTESYILVGTKRGMEECFASTCHGAGRVLSRKAAMKSEDADTVLKRLEQKGIKVMADQ 433
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EE PE+YK+V+ VVD GIS+K +LRP+AVIKG
Sbjct: 434 MGTIREEIPEAYKDVSRVVDVVEKAGISRKVARLRPLAVIKG 475
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E K H + L ++F +P GVGSKG I + DL + L G W++++GY ED E E
Sbjct: 110 EVKPHIDELTAAIFTKVPCGVGSKGAIKIGESDLLDVLANGALWAVKKGYGTKEDLECIE 169
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GR+ +A+ S VS +A +RG PQ+
Sbjct: 170 ESGRLPHANASYVSKKALERGKPQL 194
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F +P GVGSKG I + DL + L G W++++GY ED E E
Sbjct: 116 DELTAAIFTKVPCGVGSKGAIKIGESDLLDVLANGALWAVKKGYGTKEDLECIE 169
>gi|392374635|ref|YP_003206468.1| hypothetical protein DAMO_1577 [Candidatus Methylomirabilis
oxyfera]
gi|258592328|emb|CBE68637.1| conserved protein of unknown function [Candidatus Methylomirabilis
oxyfera]
Length = 480
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 177/282 (62%), Gaps = 8/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EIYD AA +G+ + GQV VMIH+GSRG GHQV TD+LV+ME+A+ +
Sbjct: 201 SGNHFLEVQTVAEIYDPHAAEVLGLFE-GQVTVMIHTGSRGLGHQVCTDSLVEMERAVIK 259
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLAC S + KA+ A F H + K +P L
Sbjct: 260 YGIDLPDRQLACTPWTSREAKAYLGAMRAAANFAWNNRQCLAHWTKEVLLKVLGVSPGAL 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDV+HNI K EEH VDG++ L VHRKG+TRAFPP HP +P Y+ GQPVLI G
Sbjct: 320 GLSTVYDVAHNIVKVEEHEVDGRRMKLAVHRKGATRAFPPGHPELPAHYRAIGQPVLIPG 379
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG S+VL GT M++TFGSTCHGAGR +SR + R + + +LE+QGI + +
Sbjct: 380 DMGRASFVLVGT-GAMEQTFGSTCHGAGRVMSRHAAIRAAKGRAIHRELENQGIIVMASG 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EE PE+YK+ T VV H G+S+ +LRP+ VIKG
Sbjct: 439 GESLAEEMPEAYKDATQVVTVVHRAGLSRMVARLRPMGVIKG 480
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L ++F IP GVGS+G I ++ ++ E L G W++++GY
Sbjct: 104 LRTELTQEEVRPRLKELVLALFHEIPTGVGSRGRIRLSKKEAEAPLLKGAAWAVKQGYGE 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D E G + ADP VS +A +RG Q+
Sbjct: 164 PADLACIESGGCLPGADPDAVSHKALERGSSQL 196
>gi|429216877|ref|YP_007174867.1| hypothetical protein Calag_0669 [Caldisphaera lagunensis DSM 15908]
gi|429133406|gb|AFZ70418.1| hypothetical protein Calag_0669 [Caldisphaera lagunensis DSM 15908]
Length = 480
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 191/282 (67%), Gaps = 8/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+++D+ A GI + QV +MIH+GSRG GHQVA+D L ME+AM+R
Sbjct: 201 SGNHFLEVQYVDKVFDEKLAKAFGIFE-NQVTIMIHTGSRGLGHQVASDYLQIMERAMRR 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N DR+LA NS + + + + + + + MH ++FA+ F T P++L
Sbjct: 260 YNTIPPDRELASIPYNSPEAQDYVRAMASAANYAWANRQIIMHWTRESFAQVFKTDPENL 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK EE+ +DGK+K ++VHRKG+TRAFPP + IP Y+ GQPVLI G
Sbjct: 320 GMDLVYDVAHNIAKIEEYDIDGKRKKVVVHRKGATRAFPPGNKEIPSKYRDYGQPVLIPG 379
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G E G++ F + HGAGR +SR+ ++R Y+EV+++L +GI ++ ++
Sbjct: 380 SMGTASYILAGVETGVKSWF-TAPHGAGRWMSRSSAKRERSYKEVVDELNKKGIYLKASN 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE PE+YKNV +V +T AVGI+K ++RP+ V KG
Sbjct: 439 VATVIEEMPEAYKNVDNVAETAAAVGIAKLVARMRPIGVTKG 480
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++D++P G+GS G + + +L+ L G W++ +GY W +D + EE G A
Sbjct: 120 LINIIYDNVPSGLGSTGKLKLTNAELDNILNYGAKWAVEKGYGWEKDIDFIEENGAWKLA 179
Query: 531 DPSKVSMRAKKRG 543
D SKVS A+KRG
Sbjct: 180 DASKVSNAARKRG 192
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++D++P G+GS G + + +L+ L G W++ +GY W +D + E
Sbjct: 120 LINIIYDNVPSGLGSTGKLKLTNAELDNILNYGAKWAVEKGYGWEKDIDFIE 171
>gi|206890831|ref|YP_002249541.1| replication factor C subunit [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742769|gb|ACI21826.1| replication factor C subunit [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 482
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E+Y+ A+ MG+ GQV VMIH+GSRGFGHQ+ D + M +A K+
Sbjct: 202 SGNHFLEVQYVAEVYEPEIATVMGLSK-GQVTVMIHTGSRGFGHQICDDYVRVMLQAAKK 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
IE D++LAC S + + + A + MH + F + FN +P DL
Sbjct: 261 YGIELPDKELACVPFRSREGQQYFSAMKGAANYAWANRQCLMHWTREVFLRLFNLSPKDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M V++DV+HNIAK E H ++G++K L+VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 321 GMKVVFDVAHNIAKEEFHFINGERKRLIVHRKGATRAFPNGHPELPDCYKDIGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG S+VL G K M+ETFGSTCHGAGR LSR ++ + + + +L +GI +R A
Sbjct: 381 DMGRVSFVLVGLPKAMEETFGSTCHGAGRLLSRNQAIKQARGRSIKQELAERGIIVRSAG 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EE P++YK+V++VVD H GI++K KL+P+ VIKG
Sbjct: 441 KETLAEEMPDAYKDVSNVVDVVHNAGIARKIVKLKPMGVIKG 482
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
L+ E + L ++ HIP GVGS G I ++ +D E ++ G W++ +G+
Sbjct: 105 LKSNLTKEEVEPKIRELIDLLYAHIPSGVGSTGKIKLSPKDEREVIKKGAIWAVEQGFGD 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ 546
AED + E +G + ADP +S +A +RG Q
Sbjct: 165 AEDLQRIESHGCLEGADPDAISQKAYERGRAQ 196
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 23/25 (92%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHS 61
V+Q+ANVA LPGIVG+S+ +PD+H+
Sbjct: 46 VRQVANVATLPGIVGKSLAMPDIHT 70
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++ HIP GVGS G I ++ +D E ++ G W++ +G+ AED + E
Sbjct: 121 LIDLLYAHIPSGVGSTGKIKLSPKDEREVIKKGAIWAVEQGFGDAEDLQRIE 172
>gi|147921429|ref|YP_684757.1| hypothetical protein LRC484 [Methanocella arvoryzae MRE50]
gi|110620153|emb|CAJ35431.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 476
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 187/282 (66%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ V++IYD+ AA G+E+ G + VMIH GSRG GHQ+ TD + +E+A ++
Sbjct: 199 SGNHFLEIQHVEKIYDEAAAKAFGLEE-GGITVMIHCGSRGAGHQICTDYVRTLEQASRK 257
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA + S + + + + + H + +AF KQF+T DL
Sbjct: 258 YGIKLADRQLACAPLTSKEAQDYFAAMAAGANYAWANRQMISHWVREAFNKQFHT---DL 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEH VDG++K L VHRKG+TRAF P P +P Y+ GQPV+I G
Sbjct: 315 KMDLVYDVAHNVAKYEEHTVDGEKKKLCVHRKGATRAFAPGRPELPATYRDIGQPVIIPG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ SYVL G + M+ TFGSTCHGAGR +SR+ +++ + E+ +L +GI ++ S
Sbjct: 375 SMGSASYVLVGAQGAMEMTFGSTCHGAGRVMSRSAAKKEVHGNEIKRELAERGIIVKAPS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAPE YK++ +VV+ H +GIS+K +L P+AV KG
Sbjct: 435 AAAISEEAPEVYKDIDEVVEVVHRLGISRKVARLVPLAVAKG 476
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L S++ +P GVGS+ + L + G W++ GY D EHCEE G M A
Sbjct: 118 LIDSLYREVPSGVGSESKFRASEDVLTQVFNHGARWAVENGYGVKADLEHCEENGEMKGA 177
Query: 531 DPSKVSMRAKKRGLPQV 547
D +KVS +A+ RG PQ+
Sbjct: 178 DSAKVSRKARDRGKPQL 194
>gi|355572245|ref|ZP_09043427.1| protein of unknown function UPF0027 [Methanolinea tarda NOBI-1]
gi|354824961|gb|EHF09200.1| protein of unknown function UPF0027 [Methanolinea tarda NOBI-1]
Length = 477
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 180/282 (63%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+V EIYD+ AAS G+ GQVC+MIH GSRG GHQV TD L +E A KR
Sbjct: 199 SGNHFLEVQVVREIYDEAAASAFGLVP-GQVCIMIHCGSRGLGHQVCTDHLRVLEAATKR 257
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA ++S + +A+ + + + MH + ++
Sbjct: 258 YGISLPDRQLACAPLDSPEGRAYFGAMAASANYAWANRQVIMHRTRKVMEELYHV--PQK 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HN+AK EEH+VDGK+ L VHRKG+TRAF P P IP Y GQPV+I G
Sbjct: 316 EMRLVYDVAHNVAKIEEHLVDGKRLRLCVHRKGATRAFGPGSPGIPASYSRVGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S+VL GT+ M++TFGSTCHGAGR +SR +++R + +E+ L GI +R +
Sbjct: 376 SMGTPSFVLHGTQTAMEKTFGSTCHGAGRVMSRTQAKRRITGREIRESLGKAGIVVRAPN 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +EAP+ YK +VV H VG+S+ +L P+AVIKG
Sbjct: 436 DASLADEAPDVYKPSAEVVRVVHEVGLSRLVARLEPLAVIKG 477
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
+D + LA+ ++ IP GVG K + ++ +DL+ L G W++R+G+ AED E CE
Sbjct: 110 KDITNRRELAERLYREIPTGVGGKSNLRLSGKDLDSVLVEGASWAVRQGFGRAEDTEFCE 169
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQ 546
E G M ADP+ VS +A+ RG+PQ
Sbjct: 170 ERGCMEGADPAAVSEKARARGIPQ 193
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 15/60 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V GVF+++ L + E V+Q+ANVA +PGIV RS+ +PD+H
Sbjct: 23 MRVPGVFYLSPRLAGTLEEG---------------AVRQLANVATMPGIVKRSLAMPDIH 67
>gi|329766488|ref|ZP_08258032.1| hypothetical protein Nlim_1842 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137087|gb|EGG41379.1| hypothetical protein Nlim_1842 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 482
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EI+D+ AA++MGI++ G + ++IH GSRGFGHQV +D L E++M++
Sbjct: 202 SGNHFLEVQKVSEIHDEEAANRMGIKE-GTITILIHCGSRGFGHQVCSDYLRVSEQSMEK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DR+LAC S + +++ K F + + H +F + FN T DL
Sbjct: 261 YNIHLADRELACVPNTSEEGESYRKAMFAALNFAWSNRQMITHWTRKSFERVFNQTESDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM+++YDV+HNIAK E+H V+GK++ L+VHRKG+TRAFP + +P+ Y+ GQPVLI G
Sbjct: 321 DMNLVYDVAHNIAKVEKHKVEGKERKLVVHRKGATRAFPSNREEVPLKYRDLGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M +FGST HGAGR +SR+K+RR+ V L +GI I+ +
Sbjct: 381 SMGTSSWILLGQPNSMDLSFGSTAHGAGRTMSRSKARRDYTEDNVRKSLSDKGIFIKALT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V VV+ H +GI+ K KL P+ VIKG
Sbjct: 441 RDGVVEETPQAYKDVDAVVNVSHNLGIATKVAKLVPIGVIKG 482
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 32/168 (19%)
Query: 412 IYLNERLAQSMFDH-----------IPVGVGSKGIIP------------MNARDLEEAL- 447
IY +E L Q M IP VG ++P + A D EE +
Sbjct: 30 IYADEALLQKMLQDRTIMQAKNVATIPGIVGHSVVLPDGHEGYGFPVGGVAAMDAEEGMI 89
Query: 448 ---EMGMDWS-----LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEA 499
+G D + LR + + + L +F IP GVGSKG + ++ L+E
Sbjct: 90 SPGGVGYDINCGVRLLRTNLTENDVRLKLKELVTDLFSSIPSGVGSKGAVKLSHSQLDEV 149
Query: 500 LEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
L G++W++ GY ++D CEE G++ NADP+KVS +A+KRG PQ+
Sbjct: 150 LVRGVNWAIDNGYGSSDDANVCEENGQIKNADPNKVSDKARKRGAPQL 197
>gi|294495120|ref|YP_003541613.1| hypothetical protein Mmah_0438 [Methanohalophilus mahii DSM 5219]
gi|292666119|gb|ADE35968.1| protein of unknown function UPF0027 [Methanohalophilus mahii DSM
5219]
Length = 493
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 159/438 (36%), Positives = 237/438 (54%), Gaps = 64/438 (14%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH---SVP-------------------------STQWL 68
V Q+ANVA LPGI S+ +PD H P + +
Sbjct: 57 VDQVANVATLPGIQKFSMAMPDAHVGYGFPIGGVAAFDAEEGVISPGGVGFDINCGVRLI 116
Query: 69 SDNTMRSS----------NIWKRSPLTLGAGNHY----AEIQIVDEIYDKWAASK-MGIE 113
N +S +++K P +G+ + +E++ + +WA + G+E
Sbjct: 117 RSNLDKSDVDGKVNDLLDSLFKAVPSGVGSKSRIRASESELEAIFTNGSRWAVEQGYGVE 176
Query: 114 -DV----GQVCV------MIHSGSRGFGH-QVAT--AGNHYAEIQIVDEIYDKWAASKMG 159
D+ G+ C+ + + +R G Q+ T +GNH+ E+Q VDEIYD AA
Sbjct: 177 ADLTHCEGEGCIEGGDPAQVSAKARKRGRPQLGTLGSGNHFLELQYVDEIYDPVAAEAFN 236
Query: 160 IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF- 218
++ GQ+ M+H GSRG GHQV TD L + +A+++ I+ D+QLACA S + +A+
Sbjct: 237 LKQ-GQLTFMVHCGSRGAGHQVCTDHLRNLTRAVEKYKIDLPDKQLACAPAQSEEAQAYF 295
Query: 219 -----AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 273
A + T + MH + F +Q N D+L + ++YDV+HN+AK EEH V+G +
Sbjct: 296 GAMASAANYAWTNRQIIMHHCREVFEQQMNMDADELGLDLVYDVAHNVAKLEEHNVNGGK 355
Query: 274 KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTC 333
K + VHRKG+TRAFP H +P Y+ GQPVLI G+MGT SYVL G + M +FGS C
Sbjct: 356 KQVYVHRKGATRAFPAGHHEVPKAYRDVGQPVLIPGSMGTPSYVLCGKQSAMDVSFGSAC 415
Query: 334 HGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHA 393
HGAGR +SR+ ++ +++ L QGIS+R A P ++ EEAP YK+ ++VVD
Sbjct: 416 HGAGRVMSRSGAKHTFRGEQIQKDLSGQGISVRAAHPSVIAEEAPGVYKSSSEVVDVVDR 475
Query: 394 VGISKKTFKLRPVAVIKG 411
+GI+ K KL PV V+KG
Sbjct: 476 LGIAGKVAKLMPVGVVKG 493
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L S+F +P GVGSK I + +LE G W++ +GY D HCE G +
Sbjct: 132 LLDSLFKAVPSGVGSKSRIRASESELEAIFTNGSRWAVEQGYGVEADLTHCEGEGCIEGG 191
Query: 531 DPSKVSMRAKKRGLPQV 547
DP++VS +A+KRG PQ+
Sbjct: 192 DPAQVSAKARKRGRPQL 208
>gi|240103562|ref|YP_002959871.1| hypothetical protein TGAM_1505 [Thermococcus gammatolerans EJ3]
gi|239911116|gb|ACS34007.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
Length = 479
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 185/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 199 SGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+L S + + + A F + H + ++F + F +D+
Sbjct: 258 YGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDM 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+MH++YDV+HNIAK EEH VDGK+ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 318 EMHIVYDVAHNIAKVEEHEVDGKKVKVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPG 377
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G E M+ETFGS+CHGAGR LSR + R + ++L +GI +R AS
Sbjct: 378 SMGTASYILAGAEGSMKETFGSSCHGAGRLLSRKAATRRYRGDRLRSELLQRGIYVRAAS 437
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V +VV+ H GI+K ++RP+ V KG
Sbjct: 438 LRVVAEEAPGAYKSVDNVVNVVHQAGIAKLVARMRPMGVAKG 479
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ L++ L G W++ GY W ED EH E
Sbjct: 110 EVRPRIKELVDTLFKNVPSGLGSKGRVRLHWTQLDDVLANGAKWAVDNGYGWKEDLEHLE 169
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP+ VS RAK+RG PQ+
Sbjct: 170 EGGRMEGADPNAVSQRAKQRGAPQL 194
>gi|304313958|ref|YP_003849105.1| hypothetical protein MTBMA_c01830 [Methanothermobacter marburgensis
str. Marburg]
gi|302587417|gb|ADL57792.1| conserved hypothetical protein [Methanothermobacter marburgensis
str. Marburg]
Length = 482
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 185/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q++DEI+++ AA+ G+ G+V VMIHSGSRG GHQV +D L M+KA +R
Sbjct: 202 SGNHFLEVQMIDEIFNEEAAAAYGVSP-GKVAVMIHSGSRGCGHQVCSDYLRLMDKAYRR 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA ++S++ + + + + +H + ++F F + +D+
Sbjct: 261 YKINIPDRQLACAPVDSDEAMDYFQAMAAAANYAWANRQMIVHWVRESFESVFGMSAEDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H V G+ L VHRKG+TRAF P IP +Y+ GQPV+I G
Sbjct: 321 EMEIVYDVAHNIAKREVHTVKGRDTELFVHRKGATRAFGPGRKEIPGEYRKIGQPVIIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SY+L GTE M+ETFGST HGAGR +SRA +++ +EV KLES+GI +R S
Sbjct: 381 TMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTYRGEEVQRKLESEGIYVRATS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV T H GIS ++ P+ V KG
Sbjct: 441 MPVVAEEAPGAYKDVDLVVRTAHETGISMLVARMLPLGVAKG 482
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F ++P GVGSKG I + +++E LE G +W++ GY W +D + EE G+M +A
Sbjct: 121 LINTLFTNVPSGVGSKGKIRLRPGEIDEVLENGAEWAIENGYGWDQDLKFLEENGKMEDA 180
Query: 531 DPSKVSMRAKKRGLPQV 547
KVS +AKKRG+PQ+
Sbjct: 181 SADKVSDKAKKRGIPQL 197
>gi|158522581|ref|YP_001530451.1| hypothetical protein Dole_2571 [Desulfococcus oleovorans Hxd3]
gi|158511407|gb|ABW68374.1| protein of unknown function UPF0027 [Desulfococcus oleovorans Hxd3]
Length = 477
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ V E++D A++ G+ + G++ +M+HSGSRG GHQV D L M K ++
Sbjct: 197 SGNHFIEVGEVVEVFDPAVAARFGLAE-GRITLMLHSGSRGLGHQVCDDYLAVMAKEARK 255
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NIE DRQLACA +N++ + A A F + +H+ + F + F P DL
Sbjct: 256 SNIELVDRQLACAPVNASAGRRYFSALACAANFAWINRQVMLHLCREVFMRVFAKGPADL 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV HNIAK E H VDG+ + L VHRKG+TRAF P HP + Y+ GQPVL+ G
Sbjct: 316 GMRMVYDVCHNIAKKERHEVDGRVRDLCVHRKGATRAFAPGHPDLCAAYRDVGQPVLVPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
M T SYVL G + M ETFGS CHGAGR LSR +++ +E+ +++ +G+++R
Sbjct: 376 DMATGSYVLAGCDGAMAETFGSACHGAGRVLSRTAAKKAARGRELFSEMAGRGVALRCQG 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EE PE+YK+V VV+ H GI+KK K+RP+AV+KG
Sbjct: 436 RTTAAEEMPEAYKDVNSVVEVVHRAGIAKKVAKIRPLAVVKG 477
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA +++ +P GVGS G I + + ++A+ G W+++ G A+D + E+ G M A
Sbjct: 116 LADALYAGVPCGVGSTGGIRLTVAEEKKAISQGASWAVKRGLGDADDIDRTEDCGHMAEA 175
Query: 531 DPSKVSMRAKKRGLPQV 547
DP VS A +RG Q+
Sbjct: 176 DPEAVSDNALERGRRQL 192
>gi|393796771|ref|ZP_10380135.1| hypothetical protein CNitlB_10734 [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 482
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EI+D+ AA++MGI++ G + ++IH GSRGFGHQV +D L E++M++
Sbjct: 202 SGNHFLEVQKVSEIHDEEAANRMGIKE-GTITILIHCGSRGFGHQVCSDYLRVSEQSMEK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DR+LAC S + +++ K F + + H +F + FN T DL
Sbjct: 261 YNIHLADRELACVPNTSEEGESYRKAMFAALNFAWSNRQMITHWTRKSFERVFNQTESDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM+++YDV+HNIAK E+H V+GK++ L+VHRKG+TRAFP + +P+ Y+ GQPVLI G
Sbjct: 321 DMNLVYDVAHNIAKVEKHKVEGKERKLVVHRKGATRAFPSNREEVPLKYRDLGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M +FGST HGAGR +SR+K+RR+ V L +GI I+ +
Sbjct: 381 SMGTSSWILLGQPNSMDLSFGSTAHGAGRTMSRSKARRDYTEDNVRKSLSDKGIFIKALT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V VV+ H +GI+ K KL P+ VIKG
Sbjct: 441 RDGVVEETPQAYKDVDAVVNVSHNLGIATKVAKLVPIGVIKG 482
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + + L +F IP GVGSKG + ++ L+E L G++W++ GY
Sbjct: 105 LRTNLTENDVRLKLKELVTDLFSSIPSGVGSKGAVKLSHSQLDEVLVRGVNWAIDNGYGS 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
++D CEE G++ NADP+KVS +A+KRG PQ+
Sbjct: 165 SDDANVCEENGQIKNADPNKVSDKARKRGAPQL 197
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ L +F IP GVGSKG + ++ L+E L G++W++ GY ++D E Q
Sbjct: 119 KELVTDLFSSIPSGVGSKGAVKLSHSQLDEVLVRGVNWAIDNGYGSSDDANVCEENGQ 176
>gi|332797098|ref|YP_004458598.1| RNA splicing ligase [Acidianus hospitalis W1]
gi|332694833|gb|AEE94300.1| archaeal RNA splicing ligase [Acidianus hospitalis W1]
Length = 479
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 181/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+VD+IYD+ A +GI GQV VM+H+GSRG GHQ+A+D L ME+AMK+
Sbjct: 199 AGNHFLEVQVVDKIYDEKIAKALGITHEGQVMVMVHTGSRGLGHQIASDYLQIMERAMKK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DR+LA S + + + F T L H + ++F F P+ L
Sbjct: 259 YNITVPDRELAAIPFESREGQDYFHAMVSGANFAWTNRQLITHWVRESFGNVFKVDPEKL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+H+IYDV+HNIAK EE+ V+GK+K LLVHRKG+TRAFPP P IP D++ GQ VLI G
Sbjct: 319 DLHIIYDVAHNIAKIEEYDVEGKRKKLLVHRKGATRAFPPGSPEIPADHRNIGQVVLIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + R+ V+ LE +GI +R +
Sbjct: 379 SMGTASYVMAGIPEG-RRTWYTAPHGAGRWMSREAAVRSYPANTVVENLEERGIIVRATT 437
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V AV I+K +LRP+ V KG
Sbjct: 438 RRVVAEEAPGAYKDVDRVAKVADAVKIAKLVVRLRPIGVTKG 479
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K + L + + ++P GVGS+G + ++ + L+E L G+ W++ +GY W
Sbjct: 102 LRTNLDYEDVKPKLKDLVEELHRNVPSGVGSEGKVKLSTQQLDEVLAEGVKWAIDKGYGW 161
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED EH E++G ADPSKVS AKKRG Q+
Sbjct: 162 AEDMEHIEQHGSWDIADPSKVSDIAKKRGASQL 194
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
L + + ++P GVGS+G + ++ + L+E L G+ W++ +GY WAED EH E+
Sbjct: 118 LVEELHRNVPSGVGSEGKVKLSTQQLDEVLAEGVKWAIDKGYGWAEDMEHIEQ 170
>gi|18312338|ref|NP_559005.1| hypothetical protein PAE0998 [Pyrobaculum aerophilum str. IM2]
gi|74565041|sp|Q8ZY09.1|RTCB_PYRAE RecName: Full=tRNA-splicing ligase RtcB
gi|18159787|gb|AAL63187.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 484
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M++
Sbjct: 202 SGNHFLEIQVVDKIYDEKIAKLFGIEREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQ 261
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ V+YDV+HNIAK EEH+VD G + + VHRKG+TRAFPP IP Y+ GQPVLI
Sbjct: 321 GLEVVYDVAHNIAKLEEHVVDEKGTVRKVWVHRKGATRAFPPGRSEIPAKYREVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 381 PGSMGTASWILVGTHDAMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMAKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+ H VG +KK + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVEAAHQVGFAKKVVRQRPIGVVKG 484
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ EE
Sbjct: 115 RPKLKELVDTIFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIEER 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G ADPSKVS +AK RG Q+
Sbjct: 175 GSWKLADPSKVSEKAKARGRDQL 197
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 121 LVDTIFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIE 172
>gi|229579032|ref|YP_002837430.1| hypothetical protein YG5714_1242 [Sulfolobus islandicus Y.G.57.14]
gi|228009746|gb|ACP45508.1| protein of unknown function UPF0027 [Sulfolobus islandicus
Y.G.57.14]
Length = 482
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQVA+D L ME+AMK+
Sbjct: 202 AGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQVASDYLQIMERAMKK 261
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DR+LA S + + A F T L H ++F + F P+ L
Sbjct: 262 YNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEKL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D++++YDV+HNIAK EE++++GK+K +LVHRKG+TRAFPP P IP D++ GQ VLI G
Sbjct: 322 DLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ L +GI +R A+
Sbjct: 382 SMGTASYVMAGIPEG-RRTWFTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 441 RRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVTKG 482
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K +L + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W
Sbjct: 105 LRTNLDYKDVKPKLAQLVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED H E++G ADPSKVS AK+RG Q+
Sbjct: 165 KEDMNHMEQHGSWELADPSKVSPIAKQRGASQL 197
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
+L + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E+
Sbjct: 120 QLVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQ 173
>gi|227827530|ref|YP_002829310.1| hypothetical protein M1425_1257 [Sulfolobus islandicus M.14.25]
gi|227830217|ref|YP_002831997.1| hypothetical protein LS215_1344 [Sulfolobus islandicus L.S.2.15]
gi|229584733|ref|YP_002843235.1| hypothetical protein M1627_1307 [Sulfolobus islandicus M.16.27]
gi|238619687|ref|YP_002914513.1| hypothetical protein M164_1241 [Sulfolobus islandicus M.16.4]
gi|284997640|ref|YP_003419407.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|227456665|gb|ACP35352.1| protein of unknown function UPF0027 [Sulfolobus islandicus
L.S.2.15]
gi|227459326|gb|ACP38012.1| protein of unknown function UPF0027 [Sulfolobus islandicus M.14.25]
gi|228019783|gb|ACP55190.1| protein of unknown function UPF0027 [Sulfolobus islandicus M.16.27]
gi|238380757|gb|ACR41845.1| protein of unknown function UPF0027 [Sulfolobus islandicus M.16.4]
gi|284445535|gb|ADB87037.1| protein of unknown function UPF0027 [Sulfolobus islandicus L.D.8.5]
Length = 482
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQVA+D L ME+AMK+
Sbjct: 202 AGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQVASDYLQIMERAMKK 261
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DR+LA S + + A F T L H ++F + F P+ L
Sbjct: 262 YNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEKL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D++++YDV+HNIAK EE++++GK+K +LVHRKG+TRAFPP P IP D++ GQ VLI G
Sbjct: 322 DLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ L +GI +R A+
Sbjct: 382 SMGTASYVMAGIPEG-RRTWFTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 441 RRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVTKG 482
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K +L + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W
Sbjct: 105 LRTNLDYKDVKPKLAQLVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED H E++G ADPSKVS AK+RG Q+
Sbjct: 165 KEDMNHMEQHGSWELADPSKVSPIAKQRGASQL 197
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
+L + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E+
Sbjct: 120 QLVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQ 173
>gi|385773199|ref|YP_005645765.1| archaeal RNA splicing ligase [Sulfolobus islandicus HVE10/4]
gi|385775833|ref|YP_005648401.1| archaeal RNA splicing ligase [Sulfolobus islandicus REY15A]
gi|323474581|gb|ADX85187.1| archaeal RNA splicing ligase [Sulfolobus islandicus REY15A]
gi|323477313|gb|ADX82551.1| archaeal RNA splicing ligase [Sulfolobus islandicus HVE10/4]
Length = 482
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQVA+D L ME+AMK+
Sbjct: 202 AGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQVASDYLQIMERAMKK 261
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DR+LA S + + A F T L H ++F + F P+ L
Sbjct: 262 YNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEKL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D++++YDV+HNIAK EE++++GK+K +LVHRKG+TRAFPP P IP D++ GQ VLI G
Sbjct: 322 DLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ L +GI +R A+
Sbjct: 382 SMGTASYVMAGIPEG-RRTWFTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 441 RRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVTKG 482
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K ++ + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W
Sbjct: 105 LRTNLDYKDVKPKLAQIVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED H E++G ADPSKVS AK+RG Q+
Sbjct: 165 KEDMNHMEQHGSWELADPSKVSPIAKQRGASQL 197
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 35/54 (64%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
++ + + ++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E+
Sbjct: 120 QIVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQ 173
>gi|406663960|ref|ZP_11071963.1| RNA-splicing ligase RtcB [Cecembia lonarensis LW9]
gi|405551740|gb|EKB47398.1| RNA-splicing ligase RtcB [Cecembia lonarensis LW9]
Length = 481
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 243/442 (54%), Gaps = 74/442 (16%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH--------SVPSTQW-------------------LS 69
++Q+ NVA LPGI S+ +PDVH + +T W L
Sbjct: 47 LEQLTNVAMLPGITKASIVMPDVHEGYGFPIGGIAATSWPDGGISPGGIGYDINCGVRLL 106
Query: 70 DNTMRSSNIWKRS-----------PLTLG-AGNHYAEIQIVDEIYDK---WAASK----- 109
+ ++ ++ +R P +G GN + +DE+ + WA K
Sbjct: 107 ASHLKREDLLRRGEDLAKALYAQVPSGVGKGGNILLSEKELDEVLRRGVQWALEKGYAVP 166
Query: 110 ---MGIEDVGQV------CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKM 158
IE GQ+ V ++ RG Q+ T +GNH+ E+ +DEIYD+ A+
Sbjct: 167 EDIAKIESQGQLDNSDPQFVSEYAKRRGI-DQLGTIGSGNHFVEVSYIDEIYDEEIAATF 225
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
G++ +G++ V+IH+GSRG GHQVA+D + M +M + I DR+LAC NS + + +
Sbjct: 226 GLK-LGRLTVLIHTGSRGLGHQVASDYMKVMVASMGKYGISVPDRELACVPFNSQEGQEY 284
Query: 219 AKQF---------NTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 269
K N ++ ++ F K NT D ++YDV+HNIAK E+H+V
Sbjct: 285 FKAMAAAANYAWCNRQVITWEIRNAWEEFFKGKNTQLD-----LVYDVAHNIAKVEDHVV 339
Query: 270 DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETF 329
+G++K L+VHRKGSTR+F P HP + Y+ TGQPV+I G+MGT SYV+ GT M+E+F
Sbjct: 340 NGEKKKLIVHRKGSTRSFGPGHPEVTDCYKQTGQPVIIPGSMGTASYVMAGTAHAMEESF 399
Query: 330 GSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVD 389
GSTCHGAGR +SR ++R+++ E+ +L + I +R S V EEAP +YK++ +V++
Sbjct: 400 GSTCHGAGRRMSRRAAQRSVNIHELEKELAGRNIFVRAGSRSGVSEEAPIAYKDIDEVIE 459
Query: 390 TCHAVGISKKTFKLRPVAVIKG 411
H GI+KK +LRP+AVIKG
Sbjct: 460 VVHQAGIAKKVARLRPMAVIKG 481
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA++++ +P GVG G I ++ ++L+E L G+ W+L +GY ED E G++
Sbjct: 120 EDLAKALYAQVPSGVGKGGNILLSEKELDEVLRRGVQWALEKGYAVPEDIAKIESQGQLD 179
Query: 529 NADPSKVSMRAKKRGLPQV 547
N+DP VS AK+RG+ Q+
Sbjct: 180 NSDPQFVSEYAKRRGIDQL 198
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
E LA++++ +P GVG G I ++ ++L+E L G+ W+L +GY ED E Q
Sbjct: 120 EDLAKALYAQVPSGVGKGGNILLSEKELDEVLRRGVQWALEKGYAVPEDIAKIESQGQ 177
>gi|330834340|ref|YP_004409068.1| hypothetical protein Mcup_0477 [Metallosphaera cuprina Ar-4]
gi|329566479|gb|AEB94584.1| conserved hypothetical protein [Metallosphaera cuprina Ar-4]
Length = 460
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+VD+IYD+ A +G+ GQV VMIH+GSRG GHQ+A+D L ME+AMK+
Sbjct: 180 AGNHFLEVQVVDKIYDERIAKALGVTREGQVTVMIHTGSRGLGHQIASDYLQIMERAMKK 239
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+LA NS + + + + F + L + + ++F K F + P+ L
Sbjct: 240 YGINIPDRELAAIPFNSREGQDYFRAMVAGANFAWSNRQLITNWVRESFGKVFKSDPEKL 299
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+H+IYDV+HNIAK EE+ V+ K+K LLVHRKG+TRAFPP P IP ++ GQ VLI G
Sbjct: 300 DLHIIYDVAHNIAKIEEYEVERKRKKLLVHRKGATRAFPPGSPEIPSVHREVGQVVLIPG 359
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ LE +GI +R A+
Sbjct: 360 SMGTASYVMAGIPEG-RRTWFTAPHGAGRWMSREAAVRNYPANSVVGSLEEKGIIVRAAT 418
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 419 RRVVAEEAPGAYKDVDRVARVAHEVKIAKLVMRLRPIGVTKG 460
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + E K L + +++ +P GVGS+ + +++++L+ L+ G+ W++ +GY W
Sbjct: 83 LRTNLDYHEVKPKLVDLIEEIYNSVPSGVGSESKVKLSSQELDNLLQEGVRWTIDKGYGW 142
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D + E+ G ADP+KVS AK+RG Q+
Sbjct: 143 KDDMNNIEQNGSWELADPTKVSQVAKQRGASQL 175
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 36/53 (67%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
L + +++ +P GVGS+ + +++++L+ L+ G+ W++ +GY W +D + E+
Sbjct: 99 LIEEIYNSVPSGVGSESKVKLSSQELDNLLQEGVRWTIDKGYGWKDDMNNIEQ 151
>gi|119872722|ref|YP_930729.1| hypothetical protein Pisl_1219 [Pyrobaculum islandicum DSM 4184]
gi|119674130|gb|ABL88386.1| protein of unknown function UPF0027 [Pyrobaculum islandicum DSM
4184]
Length = 484
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 185/284 (65%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+I+D+ A GIE GQV VMIH+GSRG GHQVATD L+ ME+ M+R
Sbjct: 202 SGNHFLEIQVVDKIFDEKVAKVFGIEREGQVLVMIHTGSRGLGHQVATDYLLIMERNMRR 261
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A +N + + K T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLNDKVAEDYIKAMAAAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ +IYDV+HNIAK EEH+VD G + + VHRKG+TRAFPP +P IP Y+ GQPVLI
Sbjct: 321 GLELIYDVAHNIAKLEEHIVDDKGTVRRVWVHRKGATRAFPPGNPEIPAKYRQVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT + M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 381 PGSMGTASWILVGTPEAMKLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMTKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV++ H VG +KK + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVESTHQVGFAKKVVRQRPIGVVKG 484
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L ++F +P GVG G + ++ + E L G++W++++GY W
Sbjct: 105 LRTNLTEEEVRPKLKELVDTIFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED E+ EE G ADPSKVS +AK RG Q+
Sbjct: 165 AEDMEYIEERGSWKLADPSKVSEKAKARGKDQL 197
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 119 KELVDTIFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIE 172
>gi|315425154|dbj|BAJ46825.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 959
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 195/317 (61%), Gaps = 10/317 (3%)
Query: 104 KWAASKMG-IEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGI 160
++ + K G I D V + +RG Q+ T +GNH+ EIQ VD+IYD AA MGI
Sbjct: 644 RYPSYKAGNIPDPDPSIVSREAKARG-ESQIGTLGSGNHFLEIQRVDKIYDPRAAKAMGI 702
Query: 161 EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAK 220
GQ+ V+IH GSRG+GHQ+ +D L ME+A+ + N+ DR+LAC NS + + K
Sbjct: 703 TQEGQITVLIHCGSRGYGHQICSDFLRIMERAVAKYNLRLPDRELACTPANSPEATQYLK 762
Query: 221 QFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 274
F + H + +F + F + DD+ M ++YDV HN+ K E+H +DG+ K
Sbjct: 763 AFGCAVNFAFANRQAISHWVRQSFEQVFKRSADDMGMQIVYDVCHNVLKFEKHKIDGEMK 822
Query: 275 TLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH 334
++ HRKG+TR+FP HPLIP Y+ GQPVLI G+MGT S+VL G K M+ +FGST H
Sbjct: 823 DVVAHRKGATRSFPAGHPLIPEVYRDIGQPVLIPGSMGTASWVLLGNPKAMELSFGSTAH 882
Query: 335 GAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAV 394
GAGR +SR+ ++R EV+ LES+GI ++ S ++EE +YK+V +VV+ H +
Sbjct: 883 GAGREMSRSGAKRRYRGDEVVRDLESRGIYVKGDSMATIVEEVDAAYKSVDEVVEVSHQL 942
Query: 395 GISKKTFKLRPVAVIKG 411
GI K +L P+ V+KG
Sbjct: 943 GIGTKVARLVPIGVVKG 959
>gi|432330730|ref|YP_007248873.1| hypothetical protein Metfor_1326 [Methanoregula formicicum SMSP]
gi|432137439|gb|AGB02366.1| hypothetical protein Metfor_1326 [Methanoregula formicicum SMSP]
Length = 478
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 176/282 (62%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+V EI+D AA GI D GQVC MIH GSRG GHQV TD L +E A K+
Sbjct: 200 SGNHFLELQVVREIFDPVAAKAFGIRD-GQVCCMIHCGSRGLGHQVCTDHLKLLETATKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA I+S + + + ++ + L H + + AK F D+
Sbjct: 259 YQIKLPDRQLACAPISSPEGRDYFSAMASSANYAWANRQLITHAVREVLAKMFGIEYDE- 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEH VD K+ + VHRKG+TRAF P P +P D GQPV+I G
Sbjct: 318 -MPLVYDVAHNVAKIEEHRVDDKRMQVCVHRKGATRAFGPRSPDLPSDLSTIGQPVIIPG 376
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GT M +TFGSTCHGAGR +SR+++++ L +EV L +GI +R
Sbjct: 377 SMGTSSYVLCGTATAMDKTFGSTCHGAGRVMSRSQAKKRLSGKEVAANLAKEGIIVRAPH 436
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +EAP+ YK +VV H GIS+ +L PV VIKG
Sbjct: 437 ENAIADEAPDVYKPSDEVVRVVHDAGISRLVARLVPVGVIKG 478
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +F +P GVG+K + + L+E + G W++ GY D CEE G M+ A
Sbjct: 119 LIDQLFHVVPTGVGAKSSQKIPSHALDEMMIKGARWAVENGYGNERDLVRCEEAGGMMGA 178
Query: 531 DPSKVSMRAKKRGLPQ 546
VS +A++RG+PQ
Sbjct: 179 SIKTVSAKARQRGIPQ 194
>gi|161528961|ref|YP_001582787.1| hypothetical protein Nmar_1453 [Nitrosopumilus maritimus SCM1]
gi|160340262|gb|ABX13349.1| protein of unknown function UPF0027 [Nitrosopumilus maritimus SCM1]
Length = 482
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ V E++D+ AA KMGI++ G + V++H GSRGFGHQV +D L E+AM +
Sbjct: 202 SGNHFLEIQKVAEVHDEEAAEKMGIKE-GTITVLVHCGSRGFGHQVCSDYLRVSEQAMSK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+I DR+LAC S + +++ K F + + H +F + FN + DL
Sbjct: 261 YDITLPDRELACVPNTSEEGESYRKAMFAALNFAWSNRQMITHWTRKSFERVFNQSESDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM ++YDV+HNIAK E+H V+G+++ L+VHRKG+TRAFP + +P Y+ GQPVL+ G
Sbjct: 321 DMKLVYDVAHNIAKVEKHKVNGEERKLVVHRKGATRAFPANRDEVPTKYRHLGQPVLVPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M +FGST HGAGR +SR+K+RRN +V L +GI I+ +
Sbjct: 381 SMGTASWILLGQPNSMDLSFGSTAHGAGRTMSRSKARRNYTEDDVKKSLNDKGIFIKALT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V VVD H +GI+ K KL P+ VIKG
Sbjct: 441 RDGVVEETPQAYKDVNSVVDVSHNLGIATKVAKLVPIGVIKG 482
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L +F IP GVGSKG + ++ +L+E L G++W++ GY D + CEE
Sbjct: 115 RSKLKDLVTDLFSSIPSGVGSKGAVKLSHSELDEVLVNGVNWAIDHGYGSTNDSDVCEEN 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G++ NADP+KVS +A+KRG PQ+
Sbjct: 175 GQIKNADPNKVSDKARKRGAPQL 197
>gi|389852904|ref|YP_006355138.1| hypothetical protein Py04_1491 [Pyrococcus sp. ST04]
gi|388250210|gb|AFK23063.1| hypothetical protein Py04_1491 [Pyrococcus sp. ST04]
Length = 444
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/283 (48%), Positives = 184/283 (65%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+IYD+ A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 163 SGNHFLEVQVVDKIYDEEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 221
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 222 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEGD 281
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ T++VHRKG+TRAFPP H IP Y+ GQPVLI
Sbjct: 282 LGMDIVYDVAHNIGKVEEHEVDGKKVTVIVHRKGATRAFPPGHEAIPRIYRDVGQPVLIP 341
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SYVL GTE M+ETFGSTCHGAGR LSR + R + N+L +GI +R A
Sbjct: 342 GSMGTASYVLAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRNELLQRGIYVRAA 401
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 402 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 444
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E
Sbjct: 74 EVRPKIKQLVDTLFKNVPSGVGSQGRIRLHWTQIDDVLVDGAKWAVDNGYGWERDLERLE 133
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 134 EGGRMEGADPDAVSQRAKQRGAPQL 158
>gi|146304515|ref|YP_001191831.1| hypothetical protein Msed_1752 [Metallosphaera sedula DSM 5348]
gi|145702765|gb|ABP95907.1| protein of unknown function UPF0027 [Metallosphaera sedula DSM
5348]
Length = 460
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+VD+IYD+ A +GI GQV VM+H+GSRG GHQ+A+D L ME+AMK+
Sbjct: 180 AGNHFLEVQVVDKIYDERIARALGITREGQVTVMVHTGSRGLGHQIASDYLQIMERAMKK 239
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
IE DR+LA S + + + + F + L + + ++F K F P+ L
Sbjct: 240 YGIEVPDRELAAIPFESREGQDYFRAMVSGANFAWSNRQLITNWVRESFGKVFKVDPEKL 299
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+H++YDV+HNIAK EE+ + GK+K +LVHRKG+TRAFPP P IP +++ GQ VLI G
Sbjct: 300 DLHIVYDVAHNIAKIEEYDIGGKRKKVLVHRKGATRAFPPGSPEIPQEHREIGQVVLIPG 359
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ LE +GI +R A+
Sbjct: 360 SMGTASYVMAGIPEG-RRTWFTAPHGAGRWMSREAAVRNYPANSVVGSLEERGIIVRAAT 418
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++ EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 419 RRVIAEEAPGAYKDVDRVARVAHEVKIAKLVMRLRPIGVTKG 460
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR +++ K + + + +P GVGS+G I + ++L+ L+ G+ W++ +GY W
Sbjct: 83 LRTNLDYSDIKPKLVDIVEELHRSVPSGVGSEGRIKLTPQELDNLLQEGVKWAVDKGYGW 142
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+ED + E+ G ADPSKVS AK+RG Q+
Sbjct: 143 SEDMNNIEQRGSWELADPSKVSQVAKQRGAAQL 175
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
+ + + +P GVGS+G I + ++L+ L+ G+ W++ +GY W+ED + E+
Sbjct: 99 IVEELHRSVPSGVGSEGRIKLTPQELDNLLQEGVKWAVDKGYGWSEDMNNIEQ 151
>gi|118431578|ref|NP_148148.2| hypothetical protein APE_1758.1 [Aeropyrum pernix K1]
gi|152031731|sp|Q9YB37.2|RTCB_AERPE RecName: Full=tRNA-splicing ligase RtcB
gi|116062903|dbj|BAA80761.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 481
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 199/320 (62%), Gaps = 15/320 (4%)
Query: 105 WAASKMGIEDVGQVCV-----MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASK 157
W K IE+ G + + + R Q+ T +GNH+ E+Q+V+ ++D+ A
Sbjct: 164 WPEDKEHIEERGSWSLADSSKVSQTAKRRGAEQLGTLGSGNHFLEVQVVERVFDERIAKA 223
Query: 158 MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKA 217
G+ + GQV VMIH+GSRG GHQVA+D L+ ME+AM++ DR+LA NS + +
Sbjct: 224 YGLFE-GQVVVMIHTGSRGLGHQVASDYLMIMERAMRKYGTIPPDRELASIPYNSPEAQN 282
Query: 218 FAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+ + T + H ++F K F+ PD L + ++YDV+HNIAK EE+ VDG
Sbjct: 283 YVRAMAAAANFAWTNRQMITHWTRESFKKVFHQDPDKLGLEIVYDVAHNIAKIEEYEVDG 342
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K+K L++HRKG+TRAFPP HP IP DY GQPVLI G+MGT SY+L G +G++ + +
Sbjct: 343 KRKKLVIHRKGATRAFPPGHPEIPKDYMDVGQPVLIPGSMGTGSYILAGVPEGVKSWY-T 401
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
HGAGR +SR++++R + +VL +L ++GI IR ++ V+EE PE+YK+V V
Sbjct: 402 APHGAGRWMSRSRAKRTKTFNQVLEELAAKGIYIRASNRATVVEEMPEAYKDVDRVAQVA 461
Query: 392 HAVGISKKTFKLRPVAVIKG 411
HAVGI + ++RP+ V KG
Sbjct: 462 HAVGIGRLVARMRPIGVTKG 481
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +++ ++P G+GS G + ++ ++L++ L+ G++W++ GY W
Sbjct: 105 LRTNLTEEEVRPKLKDLVDTLYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDKEH EE G AD SKVS AK+RG Q+
Sbjct: 165 PEDKEHIEERGSWSLADSSKVSQTAKRRGAEQL 197
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 37/52 (71%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++ ++P G+GS G + ++ ++L++ L+ G++W++ GY W EDKEH E
Sbjct: 121 LVDTLYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGWPEDKEHIE 172
>gi|397781114|ref|YP_006545587.1| hypothetical protein BN140_1948 [Methanoculleus bourgensis MS2]
gi|396939616|emb|CCJ36871.1| hypothetical protein BN140_1948 [Methanoculleus bourgensis MS2]
Length = 478
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 137/288 (47%), Positives = 179/288 (62%), Gaps = 11/288 (3%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T AGNH+ EIQ+ EI D AAS GI + GQ+C M+H GSRG GHQVATD L +
Sbjct: 194 QIGTLGAGNHFLEIQVAREIIDPEAASVFGIAE-GQICFMVHCGSRGLGHQVATDHLRTL 252
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFN 243
E A+ + I DRQLACA I+S + +A+ A + T + MH AF + F
Sbjct: 253 ESALGKYQIRLPDRQLACAPIDSPEGRAYYGGMACAANYAWTNRQVIMHEARKAFTQVFG 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
D+ M +IYDV+HN+AK E H VDG + VHRKG+TRAF P P IP +Y GQ
Sbjct: 313 IEYDE--MRLIYDVAHNVAKFEHHDVDGAPMEVCVHRKGATRAFGPQAPGIPREYAAVGQ 370
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVLI G+MGT SY+L GT MQ+T+GSTCHGAGR LSR+K+++ + +E+ L +GI
Sbjct: 371 PVLIPGSMGTSSYLLHGTATAMQKTWGSTCHGAGRVLSRSKAKKAIRGKELREHLAQEGI 430
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R ++ EEAPE YK +VV H G+S +L P+ VIKG
Sbjct: 431 LVRAHRDSVLAEEAPEVYKPSHEVVRVVHEAGLSGIVARLEPLGVIKG 478
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++F +P GVG++ + ++ ++L E + G W++ G ED CEE G M A
Sbjct: 119 LIEALFSVVPTGVGARSAMRVSNKELTEIMVNGARWAVERGLGTPEDLIRCEEEGAMPGA 178
Query: 531 DPSKVSMRAKKRGLPQV 547
+P VS +A++RG+PQ+
Sbjct: 179 EPDAVSAKARQRGMPQI 195
>gi|20095118|ref|NP_614965.1| hypothetical protein MK1682 [Methanopyrus kandleri AV19]
gi|74558780|sp|Q8TUS2.1|RTCB_METKA RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Mka hyp2 intein
gi|19888413|gb|AAM02895.1| Uncharacterized conserved protein [Methanopyrus kandleri AV19]
Length = 988
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 189/292 (64%), Gaps = 16/292 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK- 194
+GNH+ E+Q+VDEIYDK AA KMGI + GQV +M+H+GSRGFGHQV +D L ME++M+
Sbjct: 697 SGNHFLEVQVVDEIYDKEAAEKMGIREEGQVTIMVHTGSRGFGHQVCSDHLRIMERSMRD 756
Query: 195 ---RDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
R + DRQLACA + +++ K A + + H ++F + F
Sbjct: 757 VERRFGVRIPDRQLACAAMGTDEAKRYFNAMNAAANYAFANRQMISHWTRESFVEVFGDE 816
Query: 246 ---PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI---PVDYQ 299
DD+ + VIYD++HN+AK E+H VDG+++ L+VHRKG+TRAF PV ++
Sbjct: 817 YGDADDMGIEVIYDIAHNMAKIEKHPVDGEERWLVVHRKGATRAFSEEALKKHGEPVPFE 876
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
QPVLI G MGT SY+L GTEK M+ET+GSTCHGAGR +SRA ++R ++V +LE
Sbjct: 877 GLPQPVLIPGDMGTGSYILIGTEKAMEETWGSTCHGAGRTMSRAAAKRKFWGEDVARELE 936
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QGI ++ AS +V EEAP +YK+V +VV GIS +LRP+ V+KG
Sbjct: 937 RQGILVKAASMPVVAEEAPPAYKDVDEVVRAVAEAGISDPVVRLRPIGVVKG 988
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 471 LAQSMFDHIPVGVGSK-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
L +++F ++P G+GS+ + ++ ++L + + G +W++ EG+ + ED +H E G M +
Sbjct: 604 LLETIFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIESRGNMTH 663
Query: 530 ADPS-----------KVSMRAKKRGLPQV 547
A + S RA +RG PQ+
Sbjct: 664 AYETIGWEEYGPRDDVASKRAIERGRPQL 692
>gi|340345470|ref|ZP_08668602.1| RNA terminal phosphate cyclase [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520611|gb|EGP94334.1| RNA terminal phosphate cyclase [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 482
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EI+D+ AA +MGI++ G + ++IH GSRGFGHQV +D L E++M++
Sbjct: 202 SGNHFLEVQKVAEIHDEEAAKRMGIKE-GTITILIHCGSRGFGHQVCSDYLRISEQSMEK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+I DR+LAC S + +++ K F + + H +F + FN + DL
Sbjct: 261 YDITLADRELACVPNTSEEGESYRKAMFAALNFAWSNRQMITHWTRKSFERVFNQSESDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M+++YDV+HNIAK E+H VDGK++ L+VHRKG+TRAFP + +P+ Y+ GQPVL+ G
Sbjct: 321 EMNLVYDVAHNIAKVEKHKVDGKERKLVVHRKGATRAFPANREEVPLKYRDLGQPVLVPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M +FGST HGAGR +SR+K+RR+ V L +GI I+ +
Sbjct: 381 SMGTASWILLGKPNSMDLSFGSTAHGAGRTMSRSKARRDFTEDNVRKSLSDKGIFIKALT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE P++YK+V VVD H +GI+ K KL P+ VIKG
Sbjct: 441 RDGVVEETPQAYKDVDAVVDVSHNLGIATKVAKLVPIGVIKG 482
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 412 IYLNERLAQSMFDH-----------IPVGVGSKGIIP------------MNARDLEEAL- 447
IY +E L Q M IP VG ++P + A D EE +
Sbjct: 30 IYADEALLQKMLSDRTIMQAKNVATIPGIVGHSVVLPDGHEGYGFPVGGVAAMDAEEGMI 89
Query: 448 ---EMGMDWS-----LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEA 499
+G D + LR + + L +F IP GVGSKG + ++ L+E
Sbjct: 90 SPGGVGYDINCGVRLLRSNLTEKDVRAKLNELVTDLFSSIPSGVGSKGAVKLSHSQLDEV 149
Query: 500 LEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
L G+DW++ G+ D + CEE G++ NADP+KVS +A+KRG PQ+
Sbjct: 150 LVRGVDWAIDNGFGSTHDADVCEENGQIKNADPNKVSDKARKRGAPQL 197
>gi|262089268|gb|ACY24490.1| uncharacterized conserved protein [uncultured crenarchaeote 29d5]
Length = 490
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 133/291 (45%), Positives = 187/291 (64%), Gaps = 10/291 (3%)
Query: 130 GHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV 187
G Q+ T +GNH+ E+Q VD+IYD+ AA MGIE+ G V V+IH GSRGFGHQV TD L
Sbjct: 201 GPQLGTLGSGNHFLELQRVDKIYDEKAAESMGIEE-GLVTVLIHCGSRGFGHQVCTDYLK 259
Query: 188 QMEKAMKRDNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQ 241
EK ++ ++ DR+LAC NS + +++ K F + + H + F K
Sbjct: 260 ISEKKIRESGMDIIDRELACVPNNSQEGESYRKAMYSALNFAWSNRQMITHWTRNTFEKV 319
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK-QKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
T D+DM ++YDVSHNIAK E H +DG+ + L++HRKG+TRAFP IP Y+
Sbjct: 320 MGMTEGDIDMKLVYDVSHNIAKVERHTIDGEGTRDLVIHRKGATRAFPAGDSHIPDKYRN 379
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPV I G+MGT S++L G K ++ +FGST HGAGR +SR+ +RR+ V LES
Sbjct: 380 IGQPVFIPGSMGTASWILLGNSKSLELSFGSTAHGAGRTMSRSAARRSYTTDSVRKNLES 439
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+G+ I+ S + ++EE PE+YK+V DVV+ H++GI+ K +L P+ VIKG
Sbjct: 440 KGVYIKALSKEGMVEETPEAYKDVDDVVEVSHSLGIATKVARLVPIGVIKG 490
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 350 DYQEVLNKLESQGISIRV---ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLR-- 404
D++ V+ K ES+G+ + V A KLV + A + + + + G+ K L
Sbjct: 18 DFKYVIKKDESKGMMVPVTIYADEKLVSKMALD--RTIDQAANVATLKGVMKHVIVLPDG 75
Query: 405 ------PVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREG 458
PV + G+ L E + P GVG D+ + + +R
Sbjct: 76 HEGYGFPVGGVAGMDLEEGVIS------PGGVG---------YDINCGVRL-----IRTN 115
Query: 459 YIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDK 518
+ + + L +F IP GVGS + +L+E L G+ W++++GY W D
Sbjct: 116 LTEQDVRPKLKDLVNELFHAIPSGVGSSSSRKVTGSELDELLVEGVKWTVQKGYGWDSDV 175
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+ CEE G M ADP VS A+KRG PQ+
Sbjct: 176 DVCEENGCMKGADPLHVSDLARKRGGPQL 204
>gi|315230363|ref|YP_004070799.1| Protein RtcB [Thermococcus barophilus MP]
gi|315183391|gb|ADT83576.1| Protein RtcB [Thermococcus barophilus MP]
Length = 479
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+++D A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 199 SGNHFLEVQVVDKVFDPEVAEVYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+L S + + + A F + H + ++F + F +DL
Sbjct: 258 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFRQKAEDL 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
MH++YDV+HNIAK EEH VDG++ ++VHRKG+TRAFPP H +P Y+ GQPVLI G
Sbjct: 318 GMHIVYDVAHNIAKLEEHEVDGRKVKVVVHRKGATRAFPPGHEAVPRIYRDVGQPVLIPG 377
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTE M+E FGSTCHGAGR LSR + R + N+L +GI IR AS
Sbjct: 378 SMGTASYVLAGTEGAMKEAFGSTCHGAGRVLSRKAATRQYRGDRLRNELMQRGIYIRAAS 437
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YKNV +VV+ GI+K ++RP+ V KG
Sbjct: 438 LRVVAEEAPGAYKNVDNVVNVVAKAGIAKLVARMRPIGVAKG 479
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ ++L ++F ++P G+GSKG + + L++ L G W++ GY W ED E EE
Sbjct: 112 RPKIKQLIDTLFKNVPSGLGSKGRVRLQWTQLDDVLAEGAKWAVDNGYGWREDLERLEEG 171
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G M A+PS VS AK+RG PQ+
Sbjct: 172 GGMEGANPSYVSDTAKRRGAPQL 194
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
++L ++F ++P G+GSKG + + L++ L G W++ GY W ED E E
Sbjct: 116 KQLIDTLFKNVPSGLGSKGRVRLQWTQLDDVLAEGAKWAVDNGYGWREDLERLE 169
>gi|238059208|ref|ZP_04603917.1| LOW QUALITY PROTEIN: hypothetical protein MCAG_00174
[Micromonospora sp. ATCC 39149]
gi|237881019|gb|EEP69847.1| LOW QUALITY PROTEIN: hypothetical protein MCAG_00174
[Micromonospora sp. ATCC 39149]
Length = 355
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/277 (45%), Positives = 176/277 (63%), Gaps = 4/277 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDE++D+ A+ G+ GQV VMIHSGSRG GHQ+ TD + ME++M R
Sbjct: 82 SGNHFLEVQAVDEVHDEAVAAAFGLR-AGQVVVMIHSGSRGLGHQICTDHVRAMERSMPR 140
Query: 196 DNIETNDRQLACARINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVI 254
IE DRQLACA + S++ +A+ + A A++ + ++
Sbjct: 141 HGIEVPDRQLACAPVESSQGRAYLGAMAAAANYARANRQLLTAAARRVFARTAGSGLDLV 200
Query: 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
YDVSHN+AK E H VDG + L VHRKG+TRA PP HP +P D + GQPVL+ G+MGT
Sbjct: 201 YDVSHNLAKIETHAVDGADRRLCVHRKGATRALPPGHPELPGDLRAVGQPVLVPGSMGTA 260
Query: 315 SYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVM 374
SYVLTG F STCHGAGR SR+++ + + QE+ KLE QGI++R AS + +
Sbjct: 261 SYVLTGIAGA--PAFASTCHGAGRVRSRSQATKTVRGQELRRKLEDQGIAVRGASWRGLA 318
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EE PE+YK+V+ VVD A G+ ++ +L P+ V+KG
Sbjct: 319 EETPEAYKDVSAVVDVAEAAGLCRRVARLVPLGVVKG 355
>gi|383320452|ref|YP_005381293.1| hypothetical protein Mtc_2035 [Methanocella conradii HZ254]
gi|379321822|gb|AFD00775.1| hypothetical protein Mtc_2035 [Methanocella conradii HZ254]
Length = 479
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 180/282 (63%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V+++YD A G+ + GQV VM+H GSRG GHQ+ TD L +EKA +
Sbjct: 202 SGNHFLEVQYVEKVYDDAVAKAFGLWE-GQVTVMVHCGSRGAGHQICTDHLKVLEKAYVK 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA INS + + + + + H + + F + F DDL
Sbjct: 261 YGIKLYDRQLACAPINSKEAQDYFAAMAGGANYAWANRQVIAHWVRETFNRFFK---DDL 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEHMV+G++K L VHRKG+TRAF P P +P Y+ GQPV+I G
Sbjct: 318 RMDLLYDVAHNVAKFEEHMVNGEKKMLCVHRKGATRAFAPGRPELPPAYRDVGQPVIIPG 377
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ SYVL GT +GM TFGSTCHGAGR +SR + + + E+ +L +GI ++
Sbjct: 378 SMGSASYVLVGTREGMDLTFGSTCHGAGRVMSRHAAIKGIRGSEIRRELAERGIIVKAPK 437
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAPE YK + DVV+ H +GIS+K +L P+AV KG
Sbjct: 438 DSAIAEEAPEVYKEIGDVVEVVHRLGISRKVARLVPIAVAKG 479
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 427 PVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSK 486
P GVG I R L+ LE+G + G I +++ +P G+GS+
Sbjct: 91 PGGVGFD--INCGVRLLKSELEVGQVRPVASGLI------------DALYSAVPSGLGSE 136
Query: 487 GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ 546
+ + L+E +G W++ GY D EHCEE G M ADPSK+S +A+ RG PQ
Sbjct: 137 SKLRVTDAQLDEVFTLGARWAVENGYGVKADLEHCEENGEMKGADPSKISKKARDRGRPQ 196
Query: 547 V 547
+
Sbjct: 197 L 197
>gi|14520776|ref|NP_126251.1| hypothetical protein PAB0383 [Pyrococcus abyssi GE5]
gi|74558462|sp|Q9V168.1|RTCB_PYRAB RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Pab hyp2 intein
gi|5457992|emb|CAB49482.1| rtcB homolog, intein containing [Pyrococcus abyssi GE5]
gi|380741316|tpe|CCE69950.1| TPA: hypothetical protein PAB0383 [Pyrococcus abyssi GE5]
Length = 916
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 636 SGNHFLEVQVVDKIFDPEVAKVYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 694
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+L S + + + A F + H + ++F + F P+DL
Sbjct: 695 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDL 754
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H IP Y+ GQPVLI G
Sbjct: 755 GMSIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPG 814
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R AS
Sbjct: 815 SMGTASYVLAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAAS 874
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 875 MRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 916
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ ++L ++F ++P GVGS+G + ++ +++ L G W++ GY W ED E EE
Sbjct: 549 RPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEEDLERLEEG 608
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM ADP VS RAK+RG PQ+
Sbjct: 609 GRMEGADPDAVSQRAKQRGAPQL 631
>gi|70607076|ref|YP_255946.1| hypothetical protein Saci_1317 [Sulfolobus acidocaldarius DSM 639]
gi|449067315|ref|YP_007434397.1| hypothetical protein SacN8_06420 [Sulfolobus acidocaldarius N8]
gi|449069585|ref|YP_007436666.1| hypothetical protein SacRon12I_06410 [Sulfolobus acidocaldarius
Ron12/I]
gi|68567724|gb|AAY80653.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
gi|449035823|gb|AGE71249.1| hypothetical protein SacN8_06420 [Sulfolobus acidocaldarius N8]
gi|449038093|gb|AGE73518.1| hypothetical protein SacRon12I_06410 [Sulfolobus acidocaldarius
Ron12/I]
Length = 482
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+IYD+ A +GI GQ+ VM+H+GSRG GHQVA+D L ME+AMK+
Sbjct: 202 AGNHFLEIQVVDKIYDEKVAKAIGITHEGQITVMVHTGSRGLGHQVASDYLQVMERAMKK 261
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DR+LA N+ + + + A F T + H ++F + + P+ L
Sbjct: 262 YNIKVPDRELAAIPFNTREAQDYIHAMSSAANFAWTNRQMITHWARESFGRVYRIDPEKL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D++++YDV+HNIAK EE+ +DGK+K +LVHRKG+TRAFPP IP D++ GQ VLI G
Sbjct: 322 DLNIVYDVAHNIAKIEEYDIDGKRKKVLVHRKGATRAFPPGSTEIPADHRNVGQIVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY++ G +G + T+ + HGAGR +SR + R+ V+ LE +GI +R A+
Sbjct: 382 SMGTASYIMAGIPEG-RRTWFTAPHGAGRWMSREAAVRSYPVNSVVQNLEEKGIIVRAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +L+P+ V KG
Sbjct: 441 KRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVARLKPIGVTKG 482
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K+ + L + ++ ++P GVGS+G + ++ + L+ L G+ W++ GY W
Sbjct: 105 LRTNLDYKDVKDKLKDLVEEIYRNVPSGVGSEGRVKLSYQQLDNVLSEGVKWAVDNGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D EH E+ G ADPSKVS AK+RG Q+
Sbjct: 165 NRDMEHIEQSGSWNLADPSKVSPIAKQRGHTQL 197
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
L + ++ ++P GVGS+G + ++ + L+ L G+ W++ GY W D EH E+
Sbjct: 121 LVEEIYRNVPSGVGSEGRVKLSYQQLDNVLSEGVKWAVDNGYGWNRDMEHIEQ 173
>gi|15897845|ref|NP_342450.1| hypothetical protein SSO0966 [Sulfolobus solfataricus P2]
gi|284175654|ref|ZP_06389623.1| hypothetical protein Ssol98_13500 [Sulfolobus solfataricus 98/2]
gi|384434399|ref|YP_005643757.1| hypothetical protein [Sulfolobus solfataricus 98/2]
gi|13814148|gb|AAK41240.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602553|gb|ACX92156.1| protein of unknown function UPF0027 [Sulfolobus solfataricus 98/2]
Length = 482
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 181/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQVA+D L ME+AMK+
Sbjct: 202 AGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQVASDYLQIMERAMKK 261
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ DR+LA S + + A F T L H ++F + F P+ L
Sbjct: 262 YNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEKL 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+ ++YDV+HNIAK EE+++ G++K +LVHRKG+TRAFPP P IP D++ GQ VLI G
Sbjct: 322 DLSIVYDVAHNIAKIEEYVIGGERKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ G +G + T+ + HGAGR +SR + RN V+ L +GI +R A+
Sbjct: 382 SMGTASYVMAGIPEG-RRTWFTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAAT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V V H V I+K +LRP+ V KG
Sbjct: 441 RRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVTKG 482
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K +L + + ++P GVGS+G + + + L++ L G+ W++ +G+ W
Sbjct: 105 LRTNLDYKDVKPKLAQLVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDKGFGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED H E+ G ADPSKVS AK+RG Q+
Sbjct: 165 KEDMNHMEQRGSWELADPSKVSPIAKQRGASQL 197
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
+L + + ++P GVGS+G + + + L++ L G+ W++ +G+ W ED H E+
Sbjct: 120 QLVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQ 173
>gi|374327865|ref|YP_005086065.1| hypothetical protein P186_2427 [Pyrobaculum sp. 1860]
gi|356643134|gb|AET33813.1| hypothetical protein P186_2427 [Pyrobaculum sp. 1860]
Length = 484
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/284 (46%), Positives = 182/284 (64%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M++
Sbjct: 202 SGNHFLEIQVVDKIYDEKVAKVFGIEREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQ 261
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK E+H++D G + + VHRKG+TRAFPP IP Y+ GQPVLI
Sbjct: 321 GLELVYDVAHNIAKLEDHVIDERGTVRRVWVHRKGATRAFPPGRSEIPARYRDVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 381 PGSMGTASWILVGTHDSMKFTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMSKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+ H VG +KK + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVEAAHQVGFAKKVVRQRPIGVVKG 484
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L ++F +P GVG G + ++ + E L G++W++++GY W
Sbjct: 105 LRTNLTEEEVRPKLKELVDTIFRLVPPGVGGTGHLRLSPTEFERVLAEGVEWAVQKGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AED + EE G ADPSKVS +AK RG Q+
Sbjct: 165 AEDMDFIEERGSWKLADPSKVSEKAKARGRDQL 197
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVG G + ++ + E L G++W++++GY WAED + E
Sbjct: 121 LVDTIFRLVPPGVGGTGHLRLSPTEFERVLAEGVEWAVQKGYGWAEDMDFIE 172
>gi|295798137|emb|CAX68979.1| Protein of unknown function UPF0027, homolog to rtcB from E. coli
[uncultured bacterium]
Length = 484
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 248/476 (52%), Gaps = 81/476 (17%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+G+ + N+ L L++S ++Q+ANVA LPGIV S+ +PD+H
Sbjct: 25 MRVDGIVYTNETL-------LKDSSNDN-------ALEQVANVAFLPGIVNNSLAMPDIH 70
Query: 61 --------SVPSTQ--------------------WLSDNTMRSSNIWKRSP-LTLGAGNH 91
V +T L + ++ R P L NH
Sbjct: 71 WGYGFPIGGVAATDPENSGVVSPGGVGYDINCGVRLVRTNLELEDVKSRLPDLVSALYNH 130
Query: 92 Y-------AEIQIVDEIYDK-------WAASK-MGIEDVGQVC-------------VMIH 123
E+++ ++ K WA S+ MG+E+ + C V
Sbjct: 131 VPSGVGSTGEVRVTNQEEKKLILKGAGWAVSQGMGVEEDLEFCEESGALAEADPDNVSER 190
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+ RG +Q T +GNH+ E+Q+VDEI D A G+ GQ+ VMIHSGSRGFG+Q+
Sbjct: 191 AYKRGR-NQAGTLGSGNHFLEVQVVDEILDADKAQIFGLSK-GQIAVMIHSGSRGFGYQI 248
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
D + QM + + I DRQLACA I S + + + A + + M+ +
Sbjct: 249 CDDYVKQMITCLAKYGIFVPDRQLACAPIKSPEAQNYLGAMRCAANYAWANRQVLMYQVR 308
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F++ F + L M ++YDV+HNIAK E+ V+G +KTL VHRKG+TR+ P H +P
Sbjct: 309 EVFSRFFGKSWSALGMTLVYDVAHNIAKFEQFEVNGVKKTLCVHRKGATRSLGPGHVSLP 368
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPV+I G MG SY+L GT+ ++TFGSTCHGAGR SR ++ R +D E+L
Sbjct: 369 QAYKAAGQPVIIPGDMGRASYLLAGTKTAEEKTFGSTCHGAGRVASRHEALRTIDVNELL 428
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++L+++GI +R + + EEAP YK+V+ VVD G++ +LRP+AV+KG
Sbjct: 429 SELKAKGIEVRATGNRTIAEEAPSVYKDVSQVVDCVSRAGLAVPVARLRPLAVVKG 484
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K L ++++H+P GVGS G + + ++ ++ + G W++ +G ED E CEE
Sbjct: 117 KSRLPDLVSALYNHVPSGVGSTGEVRVTNQEEKKLILKGAGWAVSQGMGVEEDLEFCEES 176
Query: 525 GRMLNADPSKVSMRAKKRGLPQ 546
G + ADP VS RA KRG Q
Sbjct: 177 GALAEADPDNVSERAYKRGRNQ 198
>gi|374849583|dbj|BAL52595.1| hypothetical conserved protein [uncultured prokaryote]
Length = 486
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/300 (43%), Positives = 185/300 (61%), Gaps = 11/300 (3%)
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V+ H+ + QV T +GNHY E+Q+VD+IY+ AA G+E VGQ+ +M+H+GSR
Sbjct: 190 VVSHTAKQRQMAQVGTLGSGNHYVEVQVVDQIYNARAAEAFGLE-VGQIVIMLHTGSRAL 248
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDM 231
GHQ+ TD L +EKA K+ IE DR+L CA I S + + + + + +
Sbjct: 249 GHQIGTDYLPFLEKATKKYGIEVPDRELVCAPIESPEGQQYFRAVMAGANCAFANRQVLA 308
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
H++ +AF K D + +Y+V+HN K E H V+G+++ LLVHRKGSTRAF P
Sbjct: 309 HLVREAFWKALRVP--DTAIETLYEVAHNTVKWEVHEVNGERRRLLVHRKGSTRAFGPGR 366
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
P IP Y+ GQPVL+GGTMGT SY+L GTE+GMQETFG+ HGAGRA SR +++R
Sbjct: 367 PEIPERYRAVGQPVLVGGTMGTASYILVGTERGMQETFGTALHGAGRAKSRRQAKRQYPA 426
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ +L QGI +R + EEAP +YK+V VV+ GI + +LRP+ +KG
Sbjct: 427 DRIVEQLRKQGIIVRAHGKASISEEAPGAYKDVEHVVEVMCNAGIVARVARLRPIVCLKG 486
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LA ++++ IP G+GS G + ++ ++++ L G +++R GY ED E+ EE+G +
Sbjct: 125 EKLADTLYEVIPAGLGSTGELKLSTKEIDRVLREGARYAVRLGYGREEDLEYIEEHGCLS 184
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ADPS VS AK+R + QV
Sbjct: 185 DADPSVVSHTAKQRQMAQV 203
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E+LA ++++ IP G+GS G + ++ ++++ L G +++R GY ED E+ E
Sbjct: 125 EKLADTLYEVIPAGLGSTGELKLSTKEIDRVLREGARYAVRLGYGREEDLEYIE 178
>gi|168700778|ref|ZP_02733055.1| hypothetical protein GobsU_14734 [Gemmata obscuriglobus UQM 2246]
Length = 487
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 181/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD ++D A G+E + Q+CVMIHSGSRG G+QV DAL ++
Sbjct: 207 SGNHFLEVQVVDSVFDAEVAKAFGLE-LNQICVMIHSGSRGLGYQVCDDALATFRNCPQK 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
E DRQLACA +S + + + Q + L MH + FA+ F + DDL
Sbjct: 266 YGFELPDRQLACAPADSPEGRKYIAQMRAAANYGFCNRQLLMHQAREVFAQVFGRSWDDL 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M +YDV+HNIAK EEH V+GK+K + VHRKG+TRAFP HP +P ++ GQPV+I G
Sbjct: 326 GMEQLYDVAHNIAKFEEHTVEGKKKKVWVHRKGATRAFPAGHPEVPEAFRAVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG S+VL G++ M++TFG+TCHGAGRA+SR + ++ +++ +LE +G+ +S
Sbjct: 386 DMGRASWVLVGSQGAMEKTFGTTCHGAGRAMSRTAALKDGVGRKIERELEHKGVIAMASS 445
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EE P++YKNV DVV+ H +S++ ++RP+ VIKG
Sbjct: 446 RNGLAEEQPKAYKNVDDVVEAVHEADLSRRVARMRPLGVIKG 487
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K H + L +++F IP G G G + + + G + + G A D +H E
Sbjct: 120 KHHIKELVKALFYTIPSGAGRTGKYKFDTTETRRLMGEGPKFVIARGLGVARDLDHTEAN 179
Query: 525 GRMLNADPSKVSMRAKKRGLPQ 546
G + DP +VS A KRG Q
Sbjct: 180 GLIDGGDPHQVSDHAVKRGAEQ 201
>gi|333988031|ref|YP_004520638.1| hypothetical protein MSWAN_1826 [Methanobacterium sp. SWAN-1]
gi|333826175|gb|AEG18837.1| protein of unknown function UPF0027 [Methanobacterium sp. SWAN-1]
Length = 482
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ +DEI+D+ A GIE Q+ VMIH+GSRG GHQ+ +D L M+KA K+
Sbjct: 202 SGNHFLEIQRMDEIFDEKVAKTFGIEK-DQITVMIHTGSRGCGHQICSDYLRTMDKAYKK 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DRQLACA ++S + + + A + T + +H + ++F + F +D+
Sbjct: 261 YNINLPDRQLACAPVDSQEAQDYFGAMAAAANYAWTNRQMIVHWVRESFEQVFKRDAEDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H + G+ + VHRKG+TRAF P IP +Y+ GQPV++ G
Sbjct: 321 NMGIVYDVAHNIAKKETHKIKGRDTEVYVHRKGATRAFGPGRKEIPAEYRGVGQPVMLPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SY+L GTE M+ETFGST HGAGR +SR+ ++R +EV L +GI IR S
Sbjct: 381 TMGTASYILHGTETAMEETFGSTAHGAGRKMSRSGAKREYRGEEVKEALARKGIIIRANS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV+ H GISK K+ P+ V KG
Sbjct: 441 MPVVAEEAPGAYKDVDKVVEIAHKAGISKLVGKMVPLGVAKG 482
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E K L ++F ++P GVGSKG I + ++++ LE G W++ GY W
Sbjct: 105 LRTNLTEEEVKPRISELLDTLFKNVPSGVGSKGKIRLKEGEIDDVLENGAQWAVENGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D ++ EE GRM +AD SKVS +AKKRG+PQ+
Sbjct: 165 ESDLKYLEENGRMESADSSKVSDKAKKRGIPQL 197
>gi|443622127|ref|ZP_21106667.1| hypothetical protein STVIR_0572 [Streptomyces viridochromogenes
Tue57]
gi|443344347|gb|ELS58449.1| hypothetical protein STVIR_0572 [Streptomyces viridochromogenes
Tue57]
Length = 470
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 187/302 (61%), Gaps = 11/302 (3%)
Query: 114 DVGQVCVMIHSGSRGFGHQVATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIH 171
DV QV + RG G QV + G NH+ E+Q VDE+YD+ AA+ G+ VGQVCVMIH
Sbjct: 176 DVDQVSA--RARERGLG-QVGSLGSANHFLEVQRVDEVYDETAAAAFGLA-VGQVCVMIH 231
Query: 172 SGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DL 229
GSRG GHQ+ TD + M++AM R I DRQLAC + S + + + +
Sbjct: 232 CGSRGLGHQICTDHVRLMDRAMARYGISVPDRQLACTPVESPEGERYLGAMAAAANYGRA 291
Query: 230 DMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP 289
+ ++ DA + F + ++YDVSHN+AK E H V G ++TL VHRKG+TRAFPP
Sbjct: 292 NRQLLSDAARRVFRQAAGT-RLSLVYDVSHNLAKIETHPVSGTRRTLCVHRKGATRAFPP 350
Query: 290 HHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL 349
HP +P D + GQPVLI GTMGT SYVL G G + F STCHGAGR LSR ++ R +
Sbjct: 351 GHPDLPGDLREVGQPVLIPGTMGTASYVLVGVRDG--DAFFSTCHGAGRVLSRHRAARAV 408
Query: 350 DYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409
+E+ +LES GI++R S + + EE PE+YK+V++VV G+ + +L P+ V+
Sbjct: 409 GGRELRARLESAGIAVRPRSLRGLAEETPEAYKDVSEVVAASEGAGLCRTVARLVPLGVV 468
Query: 410 KG 411
KG
Sbjct: 469 KG 470
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 479 IPVGVGSKGIIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 537
IP G G G+ + LE L G +++ EG+ D CE+ G + +AD +VS
Sbjct: 123 IPRGAGPGGVWHLTGPGQLERILRGGSRYAVEEGHGEERDLTRCEDGGAVADADVDQVSA 182
Query: 538 RAKKRGLPQV 547
RA++RGL QV
Sbjct: 183 RARERGLGQV 192
>gi|85857851|ref|YP_460053.1| RTCB protein [Syntrophus aciditrophicus SB]
gi|85720942|gb|ABC75885.1| RTCB protein [Syntrophus aciditrophicus SB]
Length = 482
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 172/282 (60%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI++V+EI+D A+ G+ VGQV V+IHSGSRG G+Q+ D L +M K M
Sbjct: 202 SGNHFLEIEVVEEIFDPDVAAVFGLS-VGQVAVLIHSGSRGLGYQICDDYLARMVKKMGE 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ DRQLAC+ + S K + + + MH + F K P +L
Sbjct: 261 LGFDLPDRQLACSWLESTAGKDYLAAMACAANYAWANRQMLMHWTRETFEKTLQKAPREL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV HNIAK E VDG+ L VHRKG+TR+FPP HP +P Y+ GQPVLI G
Sbjct: 321 GMKLLYDVCHNIAKLETFPVDGEMMKLCVHRKGATRSFPPGHPALPERYRKVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SYV+ GTEK QETFGSTCHGAGR +SRA++ R + V ++ +G+ + +
Sbjct: 381 DMGTGSYVMVGTEKAYQETFGSTCHGAGRVMSRAQATRASAGRSVAKEMADRGVIVMASG 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EE PE+YK + DVVD H GIS+K +LR V IKG
Sbjct: 441 KGTLKEEIPEAYKRLDDVVDVVHRAGISRKVARLRAVGCIKG 482
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
++H L ++F +IP GVGS G++ + ++ + L G W++ +GY ED E E+Y
Sbjct: 115 RDHVRELVVALFQNIPTGVGSTGVLKLAQKEERQVLTQGSRWAVSQGYGTDEDVETTEDY 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G M ADP KVS RA +RG Q+
Sbjct: 175 GVMTGADPDKVSPRAMERGRDQL 197
>gi|409095859|ref|ZP_11215883.1| protein RtcB [Thermococcus zilligii AN1]
Length = 924
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 181/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+++D+ A G+ + GQV VM+H+GSRG GHQVA+D L ME A ++
Sbjct: 644 SGNHFLEVQVVDKVFDEKIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEDANRK 702
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+L S + + + A F + H + ++F + F +D+
Sbjct: 703 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDM 762
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M V+YDV+HNIAK EEH VDGK+ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 763 EMGVVYDVAHNIAKVEEHTVDGKKVKVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPG 822
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGS+CHGAGR LSR + + + N+L +GI IR AS
Sbjct: 823 SMGTASYVLAGAEGSMRETFGSSCHGAGRLLSRHAATQQYRGDRLKNELMQKGIYIRAAS 882
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K+V EEAP +YK+V +VV H GI+ ++RP+ V KG
Sbjct: 883 LKVVAEEAPGAYKSVDNVVSVVHEAGIASLVARMRPIGVAKG 924
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GS+G + ++ +++ L G W++ GY W ED EH E
Sbjct: 555 EVRPKIKELVDALFKNVPSGLGSEGRVKLHWTQIDDVLANGAKWAVENGYGWEEDLEHLE 614
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP+ VS +AK+RG PQ+
Sbjct: 615 EGGRMEGADPNAVSQKAKQRGAPQL 639
>gi|385805796|ref|YP_005842194.1| hypothetical protein FFONT_0754 [Fervidicoccus fontis Kam940]
gi|383795659|gb|AFH42742.1| UPF0027 protein PF1615 [Fervidicoccus fontis Kam940]
Length = 949
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+V++I+D+ A +GI GQV VMIH+GSRG GHQVA+D L MEK M++
Sbjct: 669 SGNHFLEVQVVEKIFDRKIAEFLGITHEGQVTVMIHTGSRGLGHQVASDYLQIMEKVMRK 728
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
DR+LA NS + + + K T L H + ++F + F T D L
Sbjct: 729 YGTVPPDRELASIPFNSPEAQDYVKAMAAAANYAWTNRQLITHWVRESFKEVFKTDDDKL 788
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EEH V+GK+K L+VHRKG+TRAFPP HP IP D++ GQ VLI G
Sbjct: 789 GLEIIYDVAHNIAKIEEHEVNGKRKRLVVHRKGATRAFPPGHPDIPKDHKNIGQVVLIPG 848
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GT +G + T+ + HGAGR +SR+++ +N +++++L +GI ++ +S
Sbjct: 849 SMGTASYVLVGTNEG-KRTWFTAPHGAGRWMSRSRALKNYTADQLISELSKKGIYVKASS 907
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++EEAP +YK+V V VGI K KLRP+ V KG
Sbjct: 908 KGVLIEEAPSAYKDVDRVALVADKVGIGKLVLKLRPIGVTKG 949
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++ ++P G+GS+G I + L+E L G++W++ G+ +ED EH EE
Sbjct: 582 RSKIKELVDTIARNVPSGLGSEGKIKVTPTILDEVLNRGVEWAVEHGFGRSEDPEHIEER 641
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G AD SKVS RAK RG P++
Sbjct: 642 GSWSIADSSKVSSRAKSRGAPEL 664
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++ ++P G+GS+G I + L+E L G++W++ G+ +ED EH E
Sbjct: 586 KELVDTIARNVPSGLGSEGKIKVTPTILDEVLNRGVEWAVEHGFGRSEDPEHIE 639
>gi|341581350|ref|YP_004761842.1| hypothetical protein GQS_01315 [Thermococcus sp. 4557]
gi|340809008|gb|AEK72165.1| hypothetical protein GQS_01315 [Thermococcus sp. 4557]
Length = 960
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+++D+ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 680 SGNHFLEVQVVDKVFDEKIAEAYGLYE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 738
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+L + + + + A F + H + ++F + F +D+
Sbjct: 739 YGVPWPDRELVSVPFQTEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDM 798
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH VDGK+ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 799 EMSIVYDVAHNIAKVEEHEVDGKKVKVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPG 858
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGS+CHGAGR +SR + R + N+L +GI +R AS
Sbjct: 859 SMGTASYVLAGAEGSMKETFGSSCHGAGRLMSRHAATRQYRGDRLRNELLQRGIYVRAAS 918
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V +VV+ H GI+ ++RP+ V KG
Sbjct: 919 LRVVAEEAPGAYKSVDNVVNVVHQAGIANLVARMRPMGVAKG 960
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ L++ L G W++ GY W ED EH E
Sbjct: 591 EVRPRIKELVDTLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLE 650
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP+ VS +AK+RG PQ+
Sbjct: 651 EGGRMEGADPNAVSQKAKQRGAPQL 675
>gi|18977987|ref|NP_579344.1| hypothetical protein PF1615 [Pyrococcus furiosus DSM 3638]
gi|74551946|sp|Q8U0H4.1|RTCB_PYRFU RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Pfu hyp2 intein
gi|18893765|gb|AAL81739.1| hypothetical protein PF1615 [Pyrococcus furiosus DSM 3638]
Length = 970
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 183/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 689 SGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 747
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 748 YGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEGD 807
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H IP Y+ GQPVLI
Sbjct: 808 LGMEIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIP 867
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SYVL GTE M ETFGSTCHGAGR LSRA + R + ++L +GI +R A
Sbjct: 868 GSMGTASYVLAGTEGAMAETFGSTCHGAGRVLSRAAATRQYRGDRIRDELLRRGIYVRAA 927
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 928 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 970
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
++L ++F ++P GVGS+G + ++ +++ L G W++ +GY W D E EE GRM
Sbjct: 606 KQLVDTLFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEEGGRME 665
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP VS RAK+RG PQ+
Sbjct: 666 GADPDAVSQRAKQRGAPQL 684
>gi|261349679|ref|ZP_05975096.1| RtcB protein [Methanobrevibacter smithii DSM 2374]
gi|288861635|gb|EFC93933.1| RtcB protein [Methanobrevibacter smithii DSM 2374]
Length = 482
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VDEIY+ A G+E G V +MIHSGSRG GHQV +D L M+KA K
Sbjct: 202 SGNHFLEIQVVDEIYNDEVAGVYGLEK-GMVVIMIHSGSRGCGHQVCSDYLRVMDKAYKN 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA +S + + + K + + H I + F + D+
Sbjct: 261 HQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQMMTHWIRETFEDILGKSAKDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H G L+VHRKG+TRAF P IP Y+ GQPVLI G
Sbjct: 321 EMDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGPGSEEIPEKYREVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SYVL GT+ M+ETFGST HGAGR LSR++++++ +E+ N L + G+ IR +
Sbjct: 381 TMGTASYVLHGTQTAMEETFGSTAHGAGRVLSRSQAKKDYKPEEIKNTLAANGVKIRATT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAP +YK+V VV + GI+K K++P+AV KG
Sbjct: 441 ENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVTKG 482
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 462 AEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 521
A+ ++ + L +++F +IP GVGSKG I + ++++ L G +W++ GY W ED E
Sbjct: 112 ADIEDKLDELIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWKEDLEVL 171
Query: 522 EEYGRMLNADPSKVSMRAKKRGLPQV 547
EE GR+ AD +KVS +AK+RG+PQ+
Sbjct: 172 EENGRIKEADSAKVSDKAKRRGIPQL 197
>gi|148642726|ref|YP_001273239.1| hypothetical protein Msm_0666 [Methanobrevibacter smithii ATCC
35061]
gi|222445779|ref|ZP_03608294.1| hypothetical protein METSMIALI_01421 [Methanobrevibacter smithii
DSM 2375]
gi|148551743|gb|ABQ86871.1| conserved hypothetical protein Msm_0666 [Methanobrevibacter smithii
ATCC 35061]
gi|222435344|gb|EEE42509.1| hypothetical protein METSMIALI_01421 [Methanobrevibacter smithii
DSM 2375]
Length = 482
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VDEIY+ A G+E G V +MIHSGSRG GHQV +D L M+KA K
Sbjct: 202 SGNHFLEIQVVDEIYNDEVAGVYGLEK-GMVVIMIHSGSRGCGHQVCSDYLRVMDKAYKN 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA +S + + + K + + H I + F + D+
Sbjct: 261 HQIDLADRQLACAPFDSREAQDYLKAMYAAANYAWANRQMMTHWIRETFEDILGKSAKDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H G L+VHRKG+TRAF P IP Y+ GQPVLI G
Sbjct: 321 EMDIVYDVAHNIAKQETHKFKGNDIKLVVHRKGATRAFGPGSEEIPEKYREVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SYVL GT+ M+ETFGST HGAGR LSR++++++ +E+ N L + G+ IR +
Sbjct: 381 TMGTASYVLHGTQTAMEETFGSTAHGAGRVLSRSQAKKDYKPEEIKNTLAANGVKIRATT 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAP +YK+V VV + GI+K K++P+AV KG
Sbjct: 441 ENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVTKG 482
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 462 AEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 521
A+ ++ + L +++F +IP GVGSKG I + ++++ L G +W++ GY W ED E
Sbjct: 112 ADIEDKLDELIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWKEDLEVL 171
Query: 522 EEYGRMLNADPSKVSMRAKKRGLPQV 547
EE GR+ AD +KVS +AK+RG+PQ+
Sbjct: 172 EENGRIKEADSAKVSDKAKRRGIPQL 197
>gi|337283911|ref|YP_004623385.1| hypothetical protein PYCH_04230 [Pyrococcus yayanosii CH1]
gi|334899845|gb|AEH24113.1| hypothetical protein PYCH_04230 [Pyrococcus yayanosii CH1]
Length = 479
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+++D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 199 SGNHFLEVQVVDKVFDPEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAVRK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+L S + + + A F + H + ++F + F P+D+
Sbjct: 258 YGLPWPDRELVSVPFQSEEGQKYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDM 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNI K EEH+V+GK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI G
Sbjct: 318 GMEIVYDVAHNIGKVEEHVVNGKKVRVIVHRKGATRAFPPGHEAVPKVYRHVGQPVLIPG 377
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTE M+ETFGSTCHGAGR LSR + R + +L +GI +R AS
Sbjct: 378 SMGTASYVLAGTEGAMEETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLQRGIYVRAAS 437
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 438 MRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 479
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++F ++P G+GS+G + ++ L++ L G W++ GY W D E EE
Sbjct: 112 RPRIKELVDTLFKNVPSGLGSQGRVRLHWTQLDDVLADGAKWAVDNGYGWERDLERLEEG 171
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM ADP+ VS RAK+RG PQ+
Sbjct: 172 GRMEGADPNAVSQRAKQRGAPQL 194
>gi|397652736|ref|YP_006493317.1| hypothetical protein PFC_10530 [Pyrococcus furiosus COM1]
gi|393190327|gb|AFN05025.1| hypothetical protein PFC_10530 [Pyrococcus furiosus COM1]
Length = 962
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 183/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 681 SGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 739
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 740 YGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEGD 799
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H IP Y+ GQPVLI
Sbjct: 800 LGMEIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIP 859
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SYVL GTE M ETFGSTCHGAGR LSRA + R + ++L +GI +R A
Sbjct: 860 GSMGTASYVLAGTEGAMAETFGSTCHGAGRVLSRAAATRXYRGDRIRDELLRRGIYVRAA 919
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 920 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 962
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
++L ++F ++P GVGS+G + ++ +++ L G W++ +GY W D E EE GRM
Sbjct: 598 KQLVDTLFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEEGGRME 657
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP VS RAK+RG PQ+
Sbjct: 658 GADPDAVSQRAKQRGAPQL 676
>gi|57640293|ref|YP_182771.1| hypothetical protein TK0358 [Thermococcus kodakarensis KOD1]
gi|74502009|sp|Q5JCZ1.1|RTCB_PYRKO RecName: Full=tRNA-splicing ligase RtcB
gi|57158617|dbj|BAD84547.1| RNA terminal phosphate cyclase operon orfB homolog, UPF0027 family
[Thermococcus kodakarensis KOD1]
Length = 482
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 181/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD++Y++ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 202 SGNHFLEVQYVDKVYNEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+L S + + + A F + H + ++F + F +D+
Sbjct: 261 YGVPWPDRELVSVPFQSEEGQQYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH VDGK+ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 321 EMEIVYDVAHNIAKLEEHEVDGKKVKVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGS+CHGAGR LSR + R + N+L +GI +R AS
Sbjct: 381 SMGTASYVLAGAEGSMRETFGSSCHGAGRLLSRKAATRQYRGDRLRNELLQRGIYVRAAS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V +VV H GI+ ++RP+ V KG
Sbjct: 441 LRVVAEEAPGAYKSVDNVVQVVHEAGIANLVARMRPMGVAKG 482
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ L++ L G W++ GY W D EH E
Sbjct: 113 EVRPKIKELVDTLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWERDLEHLE 172
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS +AK+RG PQ+
Sbjct: 173 EGGRMEGADPDAVSQKAKQRGAPQL 197
>gi|288931663|ref|YP_003435723.1| hypothetical protein Ferp_1294 [Ferroglobus placidus DSM 10642]
gi|288893911|gb|ADC65448.1| protein of unknown function UPF0027 [Ferroglobus placidus DSM
10642]
Length = 480
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+I+D+ A G+E+ G V VM+H GSRG GHQV TD L +E+A+K+
Sbjct: 200 SGNHFLEVQYVDKIFDEEIAKAFGLEE-GMVTVMVHCGSRGLGHQVCTDFLQVLERAVKK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA INS + + + + + + H + + F K F + +DL
Sbjct: 259 YGIYLPDRQLACAPINSKEGQDYFAGMAASANYAWCNRQIITHWVRETFQKVFRMSEEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H V+GK+K ++VHRKG+TRAF P +P DY+ TGQPVLI G
Sbjct: 319 GMDLVYDVAHNIAKFETHKVNGKKKKVVVHRKGATRAFGPGSEELPEDYRKTGQPVLIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTEK M+ETFGSTCHG+GR LSRA ++R L EV LE +GI +R
Sbjct: 379 SMGTPSYVLVGTEKAMEETFGSTCHGSGRVLSRAAAKRKLRGSEVKQSLERKGIYVRATQ 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ EEAPE+YK+ DVV+ H GISK KL P+ V KG
Sbjct: 439 GALLAEEAPEAYKSSDDVVEVVHRAGISKIVAKLLPLGVAKG 480
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E ++ L ++F +P GVGS+G + ++ ++L+E G W++ GY + ED +HCE
Sbjct: 111 EVRKKIRELIDALFVAVPSGVGSEGRLRVSDKELDEIFVSGARWAVENGYGYEEDLKHCE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G M A P VS +A+ RG PQ+
Sbjct: 171 ENGAMPGAKPEVVSRKARDRGRPQL 195
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVGS+G + ++ ++L+E G W++ GY + ED +H E
Sbjct: 119 LIDALFVAVPSGVGSEGRLRVSDKELDEIFVSGARWAVENGYGYEEDLKHCE 170
>gi|307353841|ref|YP_003894892.1| hypothetical protein Mpet_1701 [Methanoplanus petrolearius DSM
11571]
gi|307157074|gb|ADN36454.1| protein of unknown function UPF0027 [Methanoplanus petrolearius DSM
11571]
Length = 477
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 176/282 (62%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q EI D AA GIE Q+C MIH GSRG GHQV TD L +E A K+
Sbjct: 199 SGNHFLEVQYAAEIMDDEAAKAFGIEK-DQICFMIHCGSRGLGHQVCTDHLGTIENATKK 257
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA + S + +A+ + + + H++ + + F D
Sbjct: 258 YGIKIPDRQLACAPVKSPEGEAYFGAMAASANYAWANRQMITHMVREVIERDFGV--DYN 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HN+AK E H+VDGK+ L VHRKG+TRAF P P IP D GQPV+I G
Sbjct: 316 EMKLVYDVTHNVAKIETHVVDGKKMELCVHRKGATRAFGPGSPEIPKDLSAIGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT+ M++TFGSTCHGAGR SR+ ++++ ++ L +GI +R S
Sbjct: 376 SMGTSSYLLKGTQTAMEKTFGSTCHGAGRLASRSSAKKSHSGADIRQDLLDRGIFVRATS 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K++ EEAPE YK ++VVD H G+S K +L P+ VIKG
Sbjct: 436 NKVIAEEAPEVYKPSSEVVDIVHRAGLSMKVARLEPIGVIKG 477
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+RL ++F +P GVG+ + +LE+ + G W+++EGY +D + CEE G M
Sbjct: 115 IKRLINTLFSTVPTGVGNVAPKKFSDSELEDIMREGASWAVKEGYGMPDDVKSCEESGMM 174
Query: 528 LNADPSKVSMRAKKRGLPQ 546
A VS +A++RG PQ
Sbjct: 175 KEASTEHVSTKARQRGRPQ 193
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
VKQ+ANVA LPGIV S+G+PD+H
Sbjct: 44 VKQLANVATLPGIVKYSLGMPDIH 67
>gi|375083391|ref|ZP_09730414.1| RNA terminal phosphate cyclase [Thermococcus litoralis DSM 5473]
gi|374741901|gb|EHR78316.1| RNA terminal phosphate cyclase [Thermococcus litoralis DSM 5473]
Length = 480
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+++ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 200 SGNHFLEVQVVDKIFNEEIAKVYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
N+ DR+L + + + + A F + H + ++F + F +DL
Sbjct: 259 YNVPWPDRELVSVPFQTGEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKQKAEDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK EEH VDG++ ++VHRKG+TRAFP H +P Y+ GQPVLI G
Sbjct: 319 GMSIVYDVAHNIAKVEEHEVDGRKVKVVVHRKGATRAFPAGHEAVPRAYRNVGQPVLIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGSTCHGAGR LSR + R ++ N+L +GI IR AS
Sbjct: 379 SMGTASYVLAGAEGSMKETFGSTCHGAGRVLSRHAATRQFRGDKLRNELMQRGIYIRAAS 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YKNV +VV+ H GI+ ++RP+ V KG
Sbjct: 439 MRVVAEEAPGAYKNVDNVVNVVHEAGIANLVARMRPIGVAKG 480
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P G+GSKG I ++ L++ L G W++ GY W ED EH E
Sbjct: 111 EVRPKIKQLVDTLFKNVPSGLGSKGRIRLHWTQLDDVLADGAKWAVENGYGWKEDLEHLE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP+ VS +AK+RG PQ+
Sbjct: 171 ENGRMEGADPNAVSQKAKQRGAPQL 195
>gi|301059995|ref|ZP_07200869.1| conserved hypothetical protein [delta proteobacterium NaphS2]
gi|300445874|gb|EFK09765.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length = 481
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 178/285 (62%), Gaps = 11/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGI-EDVGQVCVMIHSGSRGFGHQVATDALVQMEK--A 192
+GNH+ EIQ VD+IYD+ A + + ED Q+ + IH+GSRGFGHQ+ D L +M + A
Sbjct: 199 SGNHFLEIQRVDKIYDREKAIRFNLFED--QITIFIHTGSRGFGHQICDDFLKEMNRKIA 256
Query: 193 MKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTP 246
DRQLACA + S K + + + MH + K TTP
Sbjct: 257 AGGQPFSLPDRQLACASLKSGLAKRYLAAMACAANYAWANRQILMHWTREILLKILATTP 316
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
D L M ++YDV HNIAKTE H V+GK TL VHRKG+TRA PP HPL+P Y+ TGQPVL
Sbjct: 317 DALGMSLLYDVCHNIAKTESHTVNGKPVTLCVHRKGATRALPPGHPLLPDVYRSTGQPVL 376
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
I G MGT SYVL G E M+++FGS CHGAGRALSR+++ + + + ++E G+ ++
Sbjct: 377 IPGDMGTFSYVLAGAEAAMEQSFGSCCHGAGRALSRSQAIKKAKSRSIHREMEDSGVFVQ 436
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + EE PE+YK+++ VV+ H G+++K +L+P+ VIKG
Sbjct: 437 SRGKKTLKEEMPEAYKDISQVVEVVHQAGLARKVARLKPLGVIKG 481
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ H + ++F IP GVGS G++ ++ + G W++++GY A D E E+
Sbjct: 112 QPHIRDMVYALFKGIPAGVGSTGMLRLSKSKQRDVAVRGAAWAVKQGYGTARDLEKTEDR 171
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G + ADPS +S RA +RGL Q+
Sbjct: 172 GVLPGADPSVLSERAVRRGLNQL 194
>gi|282164698|ref|YP_003357083.1| hypothetical protein MCP_2028 [Methanocella paludicola SANAE]
gi|282157012|dbj|BAI62100.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 479
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 184/282 (65%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ V++IYD+ A G+++ GQV VMIH GSRG GHQ+ TD + ME+A ++
Sbjct: 202 SGNHFLEIQKVEKIYDEAVAKAFGLKE-GQVTVMIHCGSRGAGHQICTDYVKTMEQASRK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA ++S + K + + + H + +AF+K + D+
Sbjct: 261 YGIKLYDRQLACAPLSSPEAKDYFAAMAAGANYAWANRQIISHWVREAFSKYYKR---DV 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEH VDG +K L VHRKG+TRAF P +PV Y+ GQPV+I G
Sbjct: 318 RMDLVYDVAHNVAKFEEHEVDGVKKALCVHRKGATRAFAPGRSEVPVAYRDVGQPVIIPG 377
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ SYVL GT++GM+ TFGSTCHGAGR +SR+ + +++ EV +L +GI ++
Sbjct: 378 SMGSASYVLAGTQRGMELTFGSTCHGAGRVMSRSAALKDIRGNEVKRQLLERGIVVKAPK 437
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAPE YK + +V+ +GISKK +L P+AV KG
Sbjct: 438 DAAIAEEAPEVYKEIDEVIAVVDGLGISKKVARLVPIAVAKG 479
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + K H L ++++ +P G+GS+ +N L E G W++ GY
Sbjct: 105 LRSELMADDVKPHKVDLINALYEAVPSGLGSESKFRVNDAQLAEVFRTGARWAVENGYGV 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D EHCEE G M ADP+KVS +A+ RG PQ+
Sbjct: 165 KADLEHCEENGEMKGADPAKVSKKARDRGRPQL 197
>gi|408421158|ref|YP_006762572.1| hypothetical protein TOL2_C37110 [Desulfobacula toluolica Tol2]
gi|405108371|emb|CCK81868.1| conserved uncharacterized protein, UPF0027 [Desulfobacula toluolica
Tol2]
Length = 477
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ +V+ I+D AA G+ + GQV +M+H+GSRG G+QV D L M K +
Sbjct: 197 SGNHFLEVGVVETIFDLEAARAYGLFE-GQVTLMLHTGSRGLGYQVCDDHLAMMTKQANK 255
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DRQL CARI S + + A A + + MH +P+ L
Sbjct: 256 LGITLPDRQLVCARIQSEQGRHYLSAMACAANYAWANRQILMHKAGLVLMDILGISPNTL 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M+++YD+ HNIAK E H++DGK++ + VHRKG+TR+F P HP I +Y+ GQP+LI G
Sbjct: 316 GMNLVYDLCHNIAKKESHIIDGKKQIVCVHRKGATRSFGPGHPSICPEYRKVGQPILIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SYVL GT++ M+ETFGSTCHGAGR LSR +++ + + +LE GI ++
Sbjct: 376 DMGTASYVLAGTQRAMEETFGSTCHGAGRVLSRKAAKKASRGRSIQRELEDLGILVKWTG 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EE P++YK+++ VVD H G+SKK KLRP+AV+KG
Sbjct: 436 RSTLAEEMPDAYKDISQVVDIVHGAGLSKKVAKLRPMAVLKG 477
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ H L ++F IP G+GS G + + + + L+ G W++++G+ A + E E+
Sbjct: 110 RPHLRNLINALFREIPSGIGSTGSLKLTNSEEKNVLKKGSLWAVQQGFGHASNLERTEDG 169
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G M +ADP +S RA +RG Q+
Sbjct: 170 GCMPDADPETLSKRALERGKKQL 192
>gi|123474356|ref|XP_001320361.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903165|gb|EAY08138.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 498
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 249/476 (52%), Gaps = 70/476 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G FF + + +L ++E+ G LP + Q+A+V+ LPGI S+ +PD+H
Sbjct: 28 MKVPGRFFASPEIFQLAIKEVEEWNENQKSG--LPSILQVAHVSTLPGIAKYSLAMPDMH 85
Query: 61 SVPSTQWLSDNTMRSSNIWK-RSPLTLG-----------AGNHYAEIQ-----IVDEIYD 103
S S++ SP +G Y +I+ +VDEIY
Sbjct: 86 SGYGFSIGGVAAFDLSDLESIVSPGGVGYDINCGVRCLVTNLSYTDIEPKIDELVDEIYK 145
Query: 104 ---------------------------KWAASKM-GIEDVGQVC-----------VMIHS 124
KWA G+++ C +I
Sbjct: 146 NVPCGVCGKKQDFIKMSDLNHILVKGAKWAVENFYGVQEDLDNCEENGCMPGADLKLISQ 205
Query: 125 GSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+G G +Q+ T +GNHY EIQ + EIYD+ AA + ++ Q+ +MIH GSR G ++
Sbjct: 206 KVKGSGINQLGTLGSGNHYVEIQRIQEIYDESAAQILNLKK-DQIVIMIHCGSRNIGKRL 264
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
AT+ + QM + + + D QL + +S A+ A F + H +
Sbjct: 265 ATEYINQMIEENPDEVAKLPDSQLVSSAASSKTGAAYISAMACAANFAWCNRQIITHFVR 324
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
++F K +DL + ++YDV+HNIAK E+H+VDG +K +VHRKG+TR+F P+ P IP
Sbjct: 325 ESFKKVLGR--NDLKVDLLYDVAHNIAKIEKHIVDGVEKEFIVHRKGATRSFGPNRPEIP 382
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPVLIGG+MGT SY+L GT+ M++TFGSTCHGAGR LSR+K+ R++ + V
Sbjct: 383 SKYRPIGQPVLIGGSMGTASYILLGTDGAMEKTFGSTCHGAGRTLSRSKASRDITEEHVK 442
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+LE +G+ R A K ++EEAPE YK++ +V+D C GISKK + P+ VIKG
Sbjct: 443 EELEEKGVKYRAAGNKTLLEEAPEVYKDIDEVIDICETTGISKKVARTVPLGVIKG 498
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 425 HIPVGVGSKGIIPMNARDLEEALE---MGMDWS-----LREGYIWAEDKEHFERLAQSMF 476
H G G+ + DLE + +G D + L + + + + L ++
Sbjct: 85 HSGYGFSIGGVAAFDLSDLESIVSPGGVGYDINCGVRCLVTNLSYTDIEPKIDELVDEIY 144
Query: 477 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 536
++P GV K + DL L G W++ Y ED ++CEE G M AD +S
Sbjct: 145 KNVPCGVCGKKQDFIKMSDLNHILVKGAKWAVENFYGVQEDLDNCEENGCMPGADLKLIS 204
Query: 537 MRAKKRGLPQV 547
+ K G+ Q+
Sbjct: 205 QKVKGSGINQL 215
>gi|328952467|ref|YP_004369801.1| hypothetical protein Desac_0741 [Desulfobacca acetoxidans DSM
11109]
gi|328452791|gb|AEB08620.1| protein of unknown function UPF0027 [Desulfobacca acetoxidans DSM
11109]
Length = 482
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI V EI+D+ A +G+ + QV V+IH+GSRG GHQV D + ++ +A +
Sbjct: 202 SGNHFTEIGYVQEIFDETLARALGVF-LDQVTVIIHTGSRGLGHQVCDDHIKKLLQASTK 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DRQL CA I S + + + A F + H + + F + P L
Sbjct: 261 YGFDLPDRQLCCAPIQSPEGEEYLAAMAAAANFAFANRQIITHWVRETFQQVLGLGPKAL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HNIAK E H V+G+ + L VHRKG+TRAFP HHP +P YQ TGQPVLI G
Sbjct: 321 GLELVYDVAHNIAKIETHTVNGRPQKLCVHRKGATRAFPAHHPEVPALYQETGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SY+L GT++ M+ETFGSTCHGAGR LSR ++ + + ++ +L +QGI IR A
Sbjct: 381 DMGRYSYLLVGTQQAMEETFGSTCHGAGRILSRHQALKRARGRSIVKELAAQGIIIRGAG 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EE PE+YK+V VV+ H GIS+K KL P+ VIKG
Sbjct: 441 KGTVAEEIPEAYKDVEQVVEVVHGAGISRKVAKLHPLGVIKG 482
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 469 ERLAQSMFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F +IP G+GS+ + L++ L G W+++ G+ A+D H E G +
Sbjct: 118 QELVDTLFSNIPSGLGSRRRDFKLAPPTLKDVLRYGAAWAVKNGFGNADDLLHIEAGGCI 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADP +S +A +RG Q+
Sbjct: 178 KGADPELISGQALERGHDQL 197
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
++Q+ANVA LPGIVG S+ +PD+H
Sbjct: 45 LQQVANVATLPGIVGPSLAMPDIH 68
>gi|262089342|gb|ACY24562.1| uncharacterized conserved protein [uncultured crenarchaeote 76h13]
Length = 490
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 184/291 (63%), Gaps = 10/291 (3%)
Query: 130 GHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV 187
G Q+ T +GNH+ E+Q VD+I+D+ AA MG+E+ GQV V+IH GSRGFGHQV TD L
Sbjct: 201 GPQLGTLGSGNHFLELQRVDKIFDEKAAQVMGVEE-GQVTVLIHCGSRGFGHQVCTDYLK 259
Query: 188 QMEKAMKRDNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQ 241
EK ++ + DR+LAC NS + +++ K F + + H + F K
Sbjct: 260 VSEKKIRETGMNIIDRELACVPNNSPEGESYRKAMYSALNFAWSNRQMITHWTRNTFEKV 319
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK-QKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
T D+DM ++YDVSHNIAK E H VDG+ + L++HRKG+TRAFP IP Y+
Sbjct: 320 MGMTEGDIDMKLVYDVSHNIAKVERHAVDGEGSRDLVIHRKGATRAFPAGDSHIPDKYRN 379
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPV I G+MGT S++L G + + +FGST HGAGR +SR+ +RRN V LE
Sbjct: 380 IGQPVFIPGSMGTASWILLGNSRSLDLSFGSTAHGAGRTMSRSAARRNYTTDGVRKNLEL 439
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+G+ I+ S + ++EE PE+YK+V VV+ H++GI+ K +L P+ VIKG
Sbjct: 440 KGVYIKALSKEGMVEETPEAYKDVDSVVEVSHSLGIATKVARLVPIGVIKG 490
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 350 DYQEVLNKLESQGISIRV---ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLR-- 404
D++ V+ K ES+G+ + V A KLV + A + + + + G+ K L
Sbjct: 18 DFKYVIKKDESRGMLVPVTIYADEKLVSKMALD--RTIDQAANVATLKGVVKHVVVLPDG 75
Query: 405 ------PVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREG 458
PV + G+ L E + P GVG D+ + + +R
Sbjct: 76 HEGYGFPVGGVAGMDLEEGVIS------PGGVG---------YDINCGVRL-----IRTN 115
Query: 459 YIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDK 518
+ + + L +F IP GVGS + +L+E L G+ W++++GY W D
Sbjct: 116 LSEQDVRPKLKDLVNELFRAIPSGVGSSSSRKVTGSELDELLVEGVKWTVQKGYGWDSDI 175
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+ CEE G M ADP VS A+KRG PQ+
Sbjct: 176 DVCEENGSMKGADPVHVSDLARKRGGPQL 204
>gi|206896085|ref|YP_002246985.1| replication factor C subunit [Coprothermobacter proteolyticus DSM
5265]
gi|206738702|gb|ACI17780.1| replication factor C subunit [Coprothermobacter proteolyticus DSM
5265]
Length = 477
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 243/439 (55%), Gaps = 67/439 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDV-----------------HSVPS--------------- 64
++Q+ NVA LPGI+ S+ +PD+ H V +
Sbjct: 42 LEQVVNVATLPGILRYSLAMPDIHWGYGFPIGGVAAFDVDHGVITPGGIGFDINCGVRLL 101
Query: 65 TQWLSDNTMRSS------NIWKRSPLTLGAGNHYA----EIQIVDEIYDKWAASK----- 109
L++ +R ++K P +G+ E+ V E+ KWA +
Sbjct: 102 VTPLTEEQVRPKLGALLDVLYKEVPSGVGSEGFIKLSVRELDKVLEMGAKWAVEQGYGTF 161
Query: 110 ---MGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKM 158
+E GQ+ V + RG Q+ T +GNH+ E+Q VDEI+D+ A +M
Sbjct: 162 EDLERLESQGQLKGADASKVSKRAKERGL-EQLGTLGSGNHFLEVQKVDEIFDEAVAKQM 220
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
G+ +GQV +M+H+GSRG GHQVATD + M KA K+ I+ D+QLA A S + + +
Sbjct: 221 GL-SLGQVTIMLHTGSRGLGHQVATDYIDVMLKASKKYGIKLVDKQLAAAPFKSEEGQDY 279
Query: 219 ------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 272
A F + I AFAK F D + VIYDV+HNIAK E+HMVDG
Sbjct: 280 WAAMQCAANFAWANRQVITDYIRKAFAKVFGNEIKD-KITVIYDVAHNIAKLEKHMVDGM 338
Query: 273 QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGST 332
++ ++VHRKG+TR+FP HHP +P Y+ TGQPV+I G+MG+ S++L G M++++GST
Sbjct: 339 EREVVVHRKGATRSFPAHHPELPSIYENTGQPVIIPGSMGSSSFLLVGLPGSMEQSWGST 398
Query: 333 CHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCH 392
CHGAGR +SR ++ R +Y +++ L +GI +R A + ++EEAPE+YK+V +VV
Sbjct: 399 CHGAGRVMSRKEAIRKGNYGTLMDSLGEKGILVRSAERETLLEEAPEAYKDVDEVVHVVE 458
Query: 393 AVGISKKTFKLRPVAVIKG 411
+G+++K ++RP+ V+KG
Sbjct: 459 ELGLNRKVARMRPMGVVKG 477
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++ +P GVGS+G I ++ R+L++ LEMG W++ +GY ED E E G++ A
Sbjct: 117 LLDVLYKEVPSGVGSEGFIKLSVRELDKVLEMGAKWAVEQGYGTFEDLERLESQGQLKGA 176
Query: 531 DPSKVSMRAKKRGLPQV 547
D SKVS RAK+RGL Q+
Sbjct: 177 DASKVSKRAKERGLEQL 193
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
L ++ +P GVGS+G I ++ R+L++ LEMG W++ +GY ED E E Q
Sbjct: 117 LLDVLYKEVPSGVGSEGFIKLSVRELDKVLEMGAKWAVEQGYGTFEDLERLESQGQ 172
>gi|206900493|ref|YP_002251661.1| RtcB protein [Dictyoglomus thermophilum H-6-12]
gi|206739596|gb|ACI18654.1| RtcB protein [Dictyoglomus thermophilum H-6-12]
Length = 486
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 255/483 (52%), Gaps = 95/483 (19%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+G+ F +D L +E++ P +Q+ANVA+LPGI+ S+ +PD+H
Sbjct: 27 MRVDGIIFADDKL----MEDILKDQSP----------EQVANVASLPGIIKHSLAMPDIH 72
Query: 61 --------------------------------------------SVPSTQWLSDNTMRSS 76
VP + L D
Sbjct: 73 WGYGFPIGGVAAMKKKGGVISPGGVGYDINCGVRLIRTNLTKEDVVPRLKELVDA----- 127
Query: 77 NIWKRSPLTLGA-GNHYAEIQIVDEIYDKWA--ASKMG---------IEDVGQVC----- 119
++ + P +G+ G+ + + +DE+ +K A A K G IE+ G++
Sbjct: 128 -LFDKIPAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWKEDLEHIEERGRLIYANPD 186
Query: 120 -VMIHSGSRG-FGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG F +GNH+ E+Q+V I++ A K+G+ Q+ VM+H+GSRG
Sbjct: 187 KVSKKAKERGEFQLGTLGSGNHFLEVQVVSRIFEPEIADKLGLFP-DQIVVMVHTGSRGL 245
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDM 231
GHQVA D + M+ AMK+ IE D QLACA +S + + + A F +
Sbjct: 246 GHQVAEDYIRVMKGAMKKYGIEVPDIQLACAPFDSPEGQDYFSAMCAAANFAWANRQMIT 305
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
H + + F + F + + L M +IYDV+HNIAK EEH VDGK + ++VHRKG+TRAFP H
Sbjct: 306 HWVREVFEEIFRESAESLGMKLIYDVAHNIAKLEEHDVDGKLEEVVVHRKGATRAFPAGH 365
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA---KSRRN 348
P +P DY+ GQPV+I G MG S+VL GT+K M+ FGSTCHGAGR SR+ KS R
Sbjct: 366 PDLPEDYKDIGQPVIIPGDMGRSSFVLIGTQKAMELAFGSTCHGAGRTQSRSQLLKSGRR 425
Query: 349 LDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAV 408
E+ +L +GI +R AS ++EEA E+YKNV DVV+ H G+SK+ +++P+AV
Sbjct: 426 A--YEIEQELLEKGILVRAASKSSLVEEASEAYKNVVDVVNVVHNAGLSKRVAQMKPIAV 483
Query: 409 IKG 411
IKG
Sbjct: 484 IKG 486
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++FD IP GVGS+G + + ++L+E LE G W++++GY W ED EH EE GR+
Sbjct: 121 LKELVDALFDKIPAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWKEDLEHIEERGRL 180
Query: 528 LNADPSKVSMRAKKRGLPQV 547
+ A+P KVS +AK+RG Q+
Sbjct: 181 IYANPDKVSKKAKERGEFQL 200
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
+ L ++FD IP GVGS+G + + ++L+E LE G W++++GY W ED EH E + +
Sbjct: 122 KELVDALFDKIPAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWKEDLEHIEERGRLI 181
Query: 476 F 476
+
Sbjct: 182 Y 182
>gi|312136715|ref|YP_004004052.1| hypothetical protein Mfer_0490 [Methanothermus fervidus DSM 2088]
gi|311224434|gb|ADP77290.1| protein of unknown function UPF0027 [Methanothermus fervidus DSM
2088]
Length = 482
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 167/467 (35%), Positives = 247/467 (52%), Gaps = 65/467 (13%)
Query: 1 MNVEGVFFVN----DHLEKLMLEELRN-SCRPGM-------------VGGFLPGVKQI-A 41
M V G FV+ D LEK ++++ N +C PG+ G + GV A
Sbjct: 25 MQVPGRIFVDEKELDKLEKGAVDQVANVACLPGIQKFSIALPDIHFGYGFPIGGVGAFSA 84
Query: 42 NVAAL-PGIVGRSVG---------LPDVHSVPSTQWLSDNTMRS--SNIWKRSPLTLGAG 89
N + PG VG + L + P + L D R+ S + + + L +G
Sbjct: 85 NTGVISPGGVGFDINCGVRVIRTNLTEEDVRPKIKELIDTLFRNIPSGVGSKGKIRLKSG 144
Query: 90 NHYAEIQIVDEIYD-----------------KWAASKMGIEDVGQVCVMIHSGSRGFGHQ 132
+DE+ + K+ +ED V + + RG Q
Sbjct: 145 E-------IDEVLENGAVWAVENGYGWEEDLKYLEENGKMEDANAEKVSVRAKRRGI-PQ 196
Query: 133 VAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME 190
+ T +GNH+ E+Q V++++D+ A G++ GQV +M+H+GSRG GHQ+ +D L M
Sbjct: 197 LGTLGSGNHFLEVQKVEKVFDENAGEVFGLKP-GQVTIMVHTGSRGCGHQICSDYLKVMN 255
Query: 191 KAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNT 244
KA ++ NI DRQLACA +++ + + + + + + +H + ++F + F
Sbjct: 256 KAYRKYNINIPDRQLACAPVDTPEAEDYFQAMAAAANYAWANRQMIVHWVRESFEQVFGE 315
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
+DL M ++YDV+HNIAK E H V+GK + VHRKG+TRAF P +P +Y+ GQP
Sbjct: 316 EAEDLGMKILYDVAHNIAKREVHKVNGKNIEVYVHRKGATRAFGPGRKEVPKEYRDIGQP 375
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
VLI GTMGT SY+L GTE M+ETFGST HGAGR +SRA ++R V +L S+GI
Sbjct: 376 VLIPGTMGTASYILHGTEMAMEETFGSTAHGAGRKMSRAGAKRVYRGNRVQRELGSRGIY 435
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ S +V EEAP +YK+V VV+T H GISK KL P+ V KG
Sbjct: 436 VKAVSMAVVAEEAPGAYKDVDTVVETTHKAGISKLVAKLTPLGVAKG 482
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 56/80 (70%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F +IP GVGSKG I + + +++E LE G W++ GY W ED ++ EE G+M
Sbjct: 118 IKELIDTLFRNIPSGVGSKGKIRLKSGEIDEVLENGAVWAVENGYGWEEDLKYLEENGKM 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
+A+ KVS+RAK+RG+PQ+
Sbjct: 178 EDANAEKVSVRAKRRGIPQL 197
>gi|48425780|pdb|1UC2|A Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
gi|48425781|pdb|1UC2|B Chain B, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
gi|403071986|pdb|4DWQ|A Chain A, Rtcb-GmpMN2+ COMPLEX
gi|403071987|pdb|4DWQ|B Chain B, Rtcb-GmpMN2+ COMPLEX
Length = 481
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 200 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 259 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 318
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 319 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 378
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 379 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 438
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 439 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E
Sbjct: 111 EVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 171 EGGRMEGADPEAVSQRAKQRGAPQL 195
>gi|403071988|pdb|4DWR|B Chain B, Rna Ligase RtcbMN2+ COMPLEX
gi|403071989|pdb|4DWR|A Chain A, Rna Ligase RtcbMN2+ COMPLEX
gi|403071990|pdb|4DWR|C Chain C, Rna Ligase RtcbMN2+ COMPLEX
Length = 487
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 200 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 259 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 318
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 319 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 378
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 379 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 438
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 439 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E
Sbjct: 111 EVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 171 EGGRMEGADPEAVSQRAKQRGAPQL 195
>gi|14591379|ref|NP_143457.1| hypothetical protein PH1602 [Pyrococcus horikoshii OT3]
gi|74571519|sp|O59245.1|RTCB_PYRHO RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Pho hyp2 intein
gi|3258031|dbj|BAA30714.1| 871aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 871
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 590 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 648
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 649 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 708
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 709 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 768
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 769 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 828
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 829 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 871
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E
Sbjct: 501 EVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLE 560
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 561 EGGRMEGADPEAVSQRAKQRGAPQL 585
>gi|332157831|ref|YP_004423110.1| hypothetical protein PNA2_0188 [Pyrococcus sp. NA2]
gi|331033294|gb|AEC51106.1| hypothetical protein PNA2_0188 [Pyrococcus sp. NA2]
Length = 916
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 183/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD++YD+ A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 635 SGNHFLEVQVVDKVYDEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 693
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 694 YRIPWPDRELVSVPFESEEGQKYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEGD 753
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH V+GK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 754 LGMDIVYDVAHNIGKVEEHEVNGKKVKVIVHRKGATRAFPPGHEAVPKIYRDVGQPVLIP 813
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SYVL GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 814 GSMGTASYVLAGTEGAMRETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 873
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 874 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 916
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I + +++ L G W++ GY W D E E
Sbjct: 546 EVRPKIKQLVDTLFKNVPSGVGSEGRIKLRWTQIDDVLVDGAKWAVDNGYGWERDLERLE 605
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 606 EGGRMEGADPDAVSQRAKQRGAPQL 630
>gi|221636031|ref|YP_002523907.1| hypothetical protein trd_A0625 [Thermomicrobium roseum DSM 5159]
gi|221157713|gb|ACM06831.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159]
Length = 486
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 185/300 (61%), Gaps = 11/300 (3%)
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V+ H+ + QV T +GNHY E+Q+VD+IY+ AA G+E +GQ+ +M+H+GSR
Sbjct: 190 VVSHTAKQRQMAQVGTLGSGNHYVEVQVVDQIYNARAAEAFGLE-LGQIVIMLHTGSRAL 248
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDM 231
GHQ+ TD L +EKA ++ IE DR+L CA I S + + + + + +
Sbjct: 249 GHQIGTDYLPFLEKATRKYGIEVPDRELVCAPIESPEGQQYFRAVMAGANCAFANRQVLA 308
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
H++ AF K D + +Y+V+HN K E H V+G+++ LLVHRKGSTRAF P
Sbjct: 309 HLVRQAFWKALRVP--DTAIETLYEVAHNTVKWEVHEVNGERRRLLVHRKGSTRAFGPGR 366
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
P +P Y+ GQPVL+GGTMGT SY+L GTE+GM+ETFG+ HGAGRA SR +++R
Sbjct: 367 PELPERYRAVGQPVLVGGTMGTASYILVGTEQGMRETFGTALHGAGRAKSRRQAKRQYPA 426
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++ +L QGI +R + EEAP +YK+V VV+ GI + +LRP+ +KG
Sbjct: 427 ERIIEELRKQGIIVRAHGKASISEEAPGAYKDVEHVVEVMCNAGIVARVARLRPIVCLKG 486
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 53/79 (67%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LA +MF+ IP G+GS G + ++ ++++ L G +++R GY +D E+ EE+G +
Sbjct: 125 EKLADTMFEVIPAGLGSTGELKLSTKEIDRVLREGARYAVRLGYGREDDLEYIEEHGCLS 184
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ADPS VS AK+R + QV
Sbjct: 185 DADPSVVSHTAKQRQMAQV 203
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E+LA +MF+ IP G+GS G + ++ ++++ L G +++R GY +D E+ E
Sbjct: 125 EKLADTMFEVIPAGLGSTGELKLSTKEIDRVLREGARYAVRLGYGREDDLEYIE 178
>gi|371910545|dbj|BAL44360.1| hypothetical conserved protein [uncultured bacterium]
gi|374853656|dbj|BAL56558.1| hypothetical conserved protein [uncultured Chloroflexi bacterium]
Length = 483
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 183/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+ +V++++D AA+ MG+++ G + V IH GSRG GHQV TD + + A+KR
Sbjct: 202 AGNHFIEVDVVEQVFDPQAAAVMGLQE-GCLAVQIHCGSRGLGHQVCTDYVQAFQHAVKR 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNT-TPDD 248
I+ DR+L CA ++S + + + K + L + AF + F
Sbjct: 261 YGIQLPDRELVCAPMDSPEGQDYLKAMRAAANFAFANRQLLAYSARRAFEETFAPHFKKG 320
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+ +YD++HN+ K E H VDG++ + VHRKG+TRAF P P +P YQ GQPV+I
Sbjct: 321 WQLVQVYDIAHNMGKIETHEVDGRKVKVCVHRKGATRAFGPGAPGLPAAYQAIGQPVIIP 380
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT S+VL GTE+ MQ FGSTCHGAGR +SRAK+++++ +E+ +LE +GI +R
Sbjct: 381 GSMGTASWVLVGTEESMQRAFGSTCHGAGRVMSRAKAKKDIRGEELRRRLEGEGIKVRAG 440
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP++YKNV VV+T VGI++K +LRPVAVIKG
Sbjct: 441 SLSGLAEEAPQAYKNVDLVVETVSHVGIARKVARLRPVAVIKG 483
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H + LA + ++ P GVGS+G++ ++ +L++ L G W+L++GY D E EE+G
Sbjct: 117 HLDTLASLLNEYCPSGVGSEGVVKVSTAELDQVLREGARWALKKGYASEADLERTEEFGM 176
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ ADP+KVS RA++RG Q+
Sbjct: 177 VEGADPAKVSERARQRGREQI 197
>gi|154151333|ref|YP_001404951.1| hypothetical protein Mboo_1792 [Methanoregula boonei 6A8]
gi|153999885|gb|ABS56308.1| protein of unknown function UPF0027 [Methanoregula boonei 6A8]
Length = 477
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 178/282 (63%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EIYD+ AA+ G++ +GQVC MIH GSRG GHQV TD L +E A KR
Sbjct: 199 SGNHFLELQEVSEIYDEKAAAAFGVK-MGQVCCMIHCGSRGLGHQVCTDHLKVLETATKR 257
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NI DRQLACA S + +A+ + + +H F + F D
Sbjct: 258 YNIALPDRQLACAPAGSPEGQAYYGAMAAAANYAWANRQMILHAARKEFVRMFGM--DYE 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEH V+G++ LLVHRKG+TR+F P P +P D GQPV+I G
Sbjct: 316 SMPLVYDVAHNVAKIEEHTVEGRRARLLVHRKGATRSFGPGAPDLPGDLAAIGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GT M+ TFGSTCHG+GR +SR+++++ L +EV + L ++GI +R +
Sbjct: 376 SMGTSSYVLAGTATAMERTFGSTCHGSGRIMSRSQAKKKLTGKEVADALLARGIIVRAPN 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +EAP+ YK ++VV H G+S +L P+ VIKG
Sbjct: 436 EAAIADEAPDVYKPSSEVVQVVHDAGLSTLVARLTPLGVIKG 477
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 464 DKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEE 523
D + L +S++ +P GVG+K + L + G W++ GY D CEE
Sbjct: 111 DIKKPRELIESLYRAVPTGVGAKSTAKIPKEALLSMMVKGARWAVETGYGTTRDLTRCEE 170
Query: 524 YGRMLNADPSKVSMRAKKRGLPQ 546
G M +AD VS +A+ RG+PQ
Sbjct: 171 GGAMNDADIRAVSEKARARGIPQ 193
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 15/60 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G FF+++ L L+ PG ++Q+ANVA LPGIV S+G+PD+H
Sbjct: 23 MRVPGRFFLSEALAGLL--------EPG-------ALQQLANVATLPGIVRYSLGMPDLH 67
>gi|281412863|ref|YP_003346942.1| hypothetical protein Tnap_1446 [Thermotoga naphthophila RKU-10]
gi|281373966|gb|ADA67528.1| protein of unknown function UPF0027 [Thermotoga naphthophila
RKU-10]
Length = 474
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 179/282 (63%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFGHQVATD + M +K
Sbjct: 197 AGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFGHQVATDYIRLMRDNLKE 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N D+QL A +A+ N + ++ H++ AF K F D
Sbjct: 256 HNKNLPDKQLINAPFEHPLGQAYYSAMNCAANYAFANREILGHLVRKAFWKVFGR---DT 312
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EE+ VDGK++ L+VHRKG+TR+ P +P Y+ GQPV+I G
Sbjct: 313 RVDLIYDVAHNIAKVEEYEVDGKRRKLVVHRKGATRSLGPGSEKVPSIYREVGQPVIIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY+L GT+K ++TFGST HGAGR L R+ + + LDY+EVL++L + I + S
Sbjct: 373 DMGTASYLLVGTKKAEEKTFGSTAHGAGRVLGRSAALKKLDYREVLDELAEKNIVVMSKS 432
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAPE YK+V VV H +GIS+K ++ P+ V+KG
Sbjct: 433 KKTLVEEAPEVYKDVDRVVQIVHEIGISRKVARMIPLGVVKG 474
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ + K+ L +++++ +P GVGS G I + + L + L G +W+++ GY ED E
Sbjct: 106 YEDVKDRMRSLVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLER 165
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
E+ G++ ADPS VS A +RG SD GT
Sbjct: 166 IEDGGKIHPADPSYVSEEAFERG----SDELGT 194
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++++ +P GVGS G I + + L + L G +W+++ GY ED E E
Sbjct: 116 LVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLERIE 167
>gi|52549702|gb|AAU83551.1| replication factor C subunit [uncultured archaeon GZfos31B6]
Length = 374
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EIYD+ + GI G + +MIH GSRG GHQ+ T+ L +EKA ++
Sbjct: 97 SGNHFLEVQCVREIYDQDTSDAFGIHK-GDITIMIHCGSRGAGHQICTEHLRVLEKAARK 155
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
IE DRQLACA + S + + + + + H + + F + F + D+
Sbjct: 156 YGIELVDRQLACAPVQSKEGQEYFTAMCAGANYAWANRQMITHWVRETFYRFFGS---DI 212
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HN+AK EEH +DGK + + VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 213 EMDLVYDVAHNVAKLEEHTIDGKPRMVYVHRKGATRAFPAGHPDVPKAYRNVGQPVLIPG 272
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G E+ M+ TFGS CHGAGR SR ++R ++ +L +QGI+++
Sbjct: 273 SMGTPSYILCGMERAMELTFGSACHGAGRVGSRKAAKRKFRGDQIEKELLAQGITVKATH 332
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P ++ EEAP YK+ DVVD H +G++ K ++ P+ V KG
Sbjct: 333 PSVLAEEAPAVYKSSADVVDVVHQLGVACKVAQVVPIGVAKG 374
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+L ++F +P GVG+K + ++ +L LE G W++ +GY +ED EHCEE GR+
Sbjct: 13 IRKLVDALFRSVPSGVGAKSKLKVSDSELRSVLEDGAGWAVEQGYGVSEDLEHCEENGRI 72
Query: 528 LNADPSKVSMRAKKRGLPQV 547
KVS + KRG PQ+
Sbjct: 73 ELPGELKVSDKVMKRGRPQL 92
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+L ++F +P GVG+K + ++ +L LE G W++ +GY +ED EH E
Sbjct: 15 KLVDALFRSVPSGVGAKSKLKVSDSELRSVLEDGAGWAVEQGYGVSEDLEHCE 67
>gi|15644109|ref|NP_229158.1| hypothetical protein TM1357 [Thermotoga maritima MSB8]
gi|170289261|ref|YP_001739499.1| hypothetical protein TRQ2_1472 [Thermotoga sp. RQ2]
gi|418045414|ref|ZP_12683509.1| protein of unknown function UPF0027 [Thermotoga maritima MSB8]
gi|4981917|gb|AAD36428.1|AE001789_13 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|170176764|gb|ACB09816.1| protein of unknown function UPF0027 [Thermotoga sp. RQ2]
gi|351676299|gb|EHA59452.1| protein of unknown function UPF0027 [Thermotoga maritima MSB8]
Length = 474
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 179/282 (63%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFGHQVATD + M +K
Sbjct: 197 AGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFGHQVATDYIRLMRDNLKE 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N D+QL A +A+ N + ++ H++ AF K F D
Sbjct: 256 HNKNLPDKQLINAPFEHPLGQAYYSAMNCAANYAFANREILGHLVRKAFWKVFGR---DT 312
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EE+ VDGK++ L+VHRKG+TR+ P +P Y+ GQPV+I G
Sbjct: 313 RVDLIYDVAHNIAKVEEYEVDGKRRKLVVHRKGATRSLGPGSEKVPSIYREVGQPVIIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY+L GT+K ++TFGST HGAGR L R+ + + LDY+EVL++L + I + S
Sbjct: 373 DMGTASYLLVGTKKAEEKTFGSTAHGAGRVLGRSAALKKLDYREVLDELAEKNIVVMSKS 432
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAPE YK+V VV H +GIS+K ++ P+ V+KG
Sbjct: 433 KKTLVEEAPEVYKDVDRVVQIVHEIGISRKVARMIPLGVVKG 474
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ + K+ L +++++ +P GVGS G I + + L + L G +W+++ GY ED E
Sbjct: 106 YEDVKDRMRSLVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLER 165
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
E+ G++ ADPS VS A +RG SD GT
Sbjct: 166 IEDGGKIHPADPSYVSEEAFERG----SDELGT 194
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++++ +P GVGS G I + + L + L G +W+++ GY ED E E
Sbjct: 116 LVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLERIE 167
>gi|41614875|ref|NP_963373.1| hypothetical protein NEQ078 [Nanoarchaeum equitans Kin4-M]
gi|74579778|sp|Q74MJ0.1|RTCB_NANEQ RecName: Full=tRNA-splicing ligase RtcB
gi|40068599|gb|AAR38934.1| NEQ078 [Nanoarchaeum equitans Kin4-M]
Length = 477
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 178/282 (63%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GI + QV V+IH+GSRG GHQVA+D L EK K
Sbjct: 199 SGNHFLEIQVVDQIYDEEIAKAFGIYEKNQVTVLIHTGSRGLGHQVASDYLRLFEKKYKY 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
D DR+L A +S + + K + L + + +F K + +
Sbjct: 259 D---VPDRELIYAPYDSKDAQNYLKAMAAAANFAWANRQLITYWVRKSFEKVLRKNIESI 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YD++HNIAK EEH +DGK++ L+V+RKG+TRAFPP H + +Y+ GQPV+I G
Sbjct: 316 GLEIVYDLAHNIAKFEEHTIDGKKQKLIVYRKGATRAFPPGHKELWGEYKKYGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G K M+ +FGS+ HGAGR LSR K+++ Y EV+ KL GI ++ +
Sbjct: 376 SMGTASYLLVGQPKAMELSFGSSAHGAGRQLSRVKAKKLYSYSEVIRKLREMGIIVKSTT 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE PE+YK++ +VV H +GISK + RPVAVIKG
Sbjct: 436 KTGVLEEIPEAYKDIDEVVRVTHELGISKIVARFRPVAVIKG 477
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E K+ L +F ++P GVG G + ++ +L + L+ G++W++ G+ W
Sbjct: 102 LRTNLTIDEIKDRLNLLVNEIFRNVPAGVGEGGKLKLSIDELNKVLDYGVNWAIDNGFGW 161
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED+ E +G + AD VS AK+RG Q+
Sbjct: 162 EEDRNRIESHGYLDFADSDAVSNTAKQRGKDQL 194
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +F ++P GVG G + ++ +L + L+ G++W++ G+ W ED+ E
Sbjct: 118 LVNEIFRNVPAGVGEGGKLKLSIDELNKVLDYGVNWAIDNGFGWEEDRNRIE 169
>gi|84489450|ref|YP_447682.1| hypothetical protein Msp_0641 [Methanosphaera stadtmanae DSM 3091]
gi|84372769|gb|ABC57039.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
Length = 482
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 157/439 (35%), Positives = 229/439 (52%), Gaps = 66/439 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPD-----------------VHSVPS-----------TQWL 68
++Q+ANVA L GI RS+GLPD ++ V S + L
Sbjct: 46 IEQVANVACLEGIQKRSIGLPDIHFGYGFSIGGVAAFSEINGVVSPGGVGFDINCGVRLL 105
Query: 69 SDNTMRS----------SNIWKRSPLTLGAG--NHYAEIQIVDEIYD--KWAASK-MG-- 111
N + + ++ + P LG+ H E +I D + + KWA G
Sbjct: 106 KTNLTKQDIQPHLKDLVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVENGFGWE 165
Query: 112 -----------IEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKM 158
+E V + RG Q+ + +GNH+ EIQ + +IYD+ A
Sbjct: 166 EDLKFLEENGCMEGADASLVSTKAKRRGI-PQLGSLGSGNHFLEIQSIGDIYDEEIAKAY 224
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
G+E QV V+IH+GSRG G+Q+ D L +M+K KR + DRQLACA I+S++ + +
Sbjct: 225 GLEK-DQVVVLIHTGSRGCGYQICADNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNY 283
Query: 219 AK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 272
K + T + H + ++F + L ++V+YDV+HNI K E+H +
Sbjct: 284 LKAMAAGANYAWTNRQMIQHWVRESFENILKQDAESLGLNVLYDVAHNIIKKEQHKIGKI 343
Query: 273 QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGST 332
+ + VHRKG+TRAF P IP +Y+ GQPVLI GTMGT SY+L GTE M ETFGST
Sbjct: 344 NRNMYVHRKGATRAFGPGRKEIPQEYRSVGQPVLIPGTMGTSSYILAGTETAMDETFGST 403
Query: 333 CHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCH 392
HGAGR LSR+ ++R +E+ L +GI ++ S ++ EEAP +YK+V VV T
Sbjct: 404 AHGAGRVLSRSGAKREFTPEEISKDLADKGIILKANSQPVIAEEAPNAYKDVDSVVKTAD 463
Query: 393 AVGISKKTFKLRPVAVIKG 411
GISK +++P+ VIKG
Sbjct: 464 KTGISKLVAQMKPLGVIKG 482
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H + L +F+ +P G+GS GI + ++++ LE G W++ G+ W ED + EE G
Sbjct: 117 HLKDLVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVENGFGWEEDLKFLEENGC 176
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
M AD S VS +AK+RG+PQ+
Sbjct: 177 MEGADASLVSTKAKRRGIPQL 197
>gi|320160545|ref|YP_004173769.1| hypothetical protein ANT_11350 [Anaerolinea thermophila UNI-1]
gi|319994398|dbj|BAJ63169.1| hypothetical protein ANT_11350 [Anaerolinea thermophila UNI-1]
Length = 483
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 183/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+++VD+I+D AA+ MG+ + G + + IH GSRGFGHQ+ +D + + + A++R
Sbjct: 203 AGNHFLEVEVVDQIFDAEAANAMGLFE-GCLVLSIHCGSRGFGHQICSDYVQEFQGAVRR 261
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+L CA ++S + +A+ A + + H AF + + +
Sbjct: 262 YGIQLPDRELVCAPLDSPEGQAYLGAMRAAANYAFLNRQILAHHARQAFEEVLSGKVKNW 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YD++HNI K E H VDGKQ + VHRKG+TRAF P P IP Y+ GQPVL+ G
Sbjct: 322 HLRQVYDIAHNIGKIETHEVDGKQVKVCVHRKGATRAFGPGSPAIPAAYRPIGQPVLVPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S+VL GTE M+ +FGS+CHGAGR +SR +++R + + + +LE+ GI +R S
Sbjct: 382 SMGTASWVLVGTETSMRISFGSSCHGAGRVMSRNEAKRQVRGEHLRKELEADGIHLRAGS 441
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP++YK+V VV+T GI++K +LRPVAV+KG
Sbjct: 442 LSGLAEEAPQAYKDVDAVVETVSGAGIARKVARLRPVAVVKG 483
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
+ + L ++ H P GVG+ G I ++ ++L++A +G W+L++G +D E EE G
Sbjct: 118 YLDTLVAALDHHCPSGVGTHGAIRLSDKELDQACRLGSRWALKQGMASEQDLEFTEENGC 177
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ A P KVS RAK+RG Q+
Sbjct: 178 IEGAAPEKVSARAKERGREQL 198
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 413 YLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
YL+ L ++ H P GVG+ G I ++ ++L++A +G W+L++G +D E E
Sbjct: 118 YLDT-LVAALDHHCPSGVGTHGAIRLSDKELDQACRLGSRWALKQGMASEQDLEFTE 173
>gi|395645740|ref|ZP_10433600.1| protein of unknown function UPF0027 [Methanofollis liminatans DSM
4140]
gi|395442480|gb|EJG07237.1| protein of unknown function UPF0027 [Methanofollis liminatans DSM
4140]
Length = 477
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 171/282 (60%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ VD ++D AA G+ GQ+C M+H GSRG GHQ+ TD L +E A +R
Sbjct: 199 SGNHFLEIQAVDAVFDNEAAQTFGL-SAGQICFMVHCGSRGLGHQICTDHLRTLESATRR 257
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
IE DRQLACA ++S + +A+ + + H + + + D
Sbjct: 258 YGIEIPDRQLACAPVHSPEGEAYFGAMAAAANYAWVNRQVITHQVRTVLNRMYGI--DYE 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HN+AK E H D ++TL VHRKG+TRAF P P +P DY+ GQPV+I G
Sbjct: 316 EMPLVYDVAHNVAKMERHNTDKGRQTLCVHRKGATRAFGPGCPEVPQDYRAVGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ SYVL GT M++TFGSTCHGAGR +SR K+++ EV L QGI +R S
Sbjct: 376 SMGSASYVLHGTNTAMEKTFGSTCHGAGRVMSRTKAKKATPGSEVRKDLLKQGIIVRATS 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP++YK VVD G+S +LRP+ VIKG
Sbjct: 436 DASIAEEAPDAYKESYKVVDVVRRAGLSLPVVRLRPIGVIKG 477
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
+D ++ L +++F +P GVG++ + ++ DLEE + G++W++ GY D HCE
Sbjct: 110 DDIKNPRALIEALFTTVPTGVGAESEMRISPHDLEEIMVEGVNWAVAAGYGTENDAAHCE 169
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQ 546
E G+M NA+ + VS +A +RG+PQ
Sbjct: 170 EGGKMPNANAAPVSKKACQRGMPQ 193
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F +P GVG++ + ++ DLEE + G++W++ GY D H E
Sbjct: 118 LIEALFTTVPTGVGAESEMRISPHDLEEIMVEGVNWAVAAGYGTENDAAHCE 169
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 15/61 (24%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G FF+++ L + + VG V+Q+ANVA LPGIV S+ +PD+H
Sbjct: 23 MRVPGRFFLSEDLSETL-----------EVGA----VQQLANVAVLPGIVRYSLAMPDIH 67
Query: 61 S 61
S
Sbjct: 68 S 68
>gi|222100208|ref|YP_002534776.1| hypothetical protein CTN_1234 [Thermotoga neapolitana DSM 4359]
gi|221572598|gb|ACM23410.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
Length = 474
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 181/282 (64%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+V+EIYD+ A G+E VG + +MIHSGSRGFGHQVATD + M +K
Sbjct: 197 AGNHFIEVQMVEEIYDRDLAEFFGLE-VGTITIMIHSGSRGFGHQVATDYIRLMRDRLKE 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N + D+QL A +A+ N + ++ H++ AF K F D
Sbjct: 256 HNRDLPDKQLINAPFEHPLGQAYYSAMNCAANYAFANREILGHLVRKAFWKVFGK---DT 312
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EE+ +DGK+K L+VHRKG+TR+ P + +P Y+ GQPV+I G
Sbjct: 313 RVELIYDVAHNIAKVEEYEIDGKRKKLVVHRKGATRSLGPGNEKVPEIYREVGQPVIIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY+L GT K ++TFGST HGAGR L R+ + + Y+E+L++LE + I + S
Sbjct: 373 DMGTASYLLIGTRKAEEKTFGSTAHGAGRVLGRSAALKRWSYREILDELERKNIIVMSKS 432
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAPE+YK+V VV H +GIS+K ++ P+ V+KG
Sbjct: 433 KKTLVEEAPEAYKDVDRVVHIVHEIGISRKIARMVPLGVVKG 474
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
++ + +++++ +P GVG++G I + + L + L G +W+++ GY ED E E+
Sbjct: 110 RDRLRAIVEAIYETVPAGVGARGDIVLGKKGLRKVLVEGAEWAVKAGYGLEEDLERIEDG 169
Query: 525 GRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
G++ ADP+ VS A +RG SD GT
Sbjct: 170 GKIHPADPNYVSEEAFERG----SDELGT 194
>gi|403253699|ref|ZP_10920000.1| hypothetical protein EMP_08007 [Thermotoga sp. EMP]
gi|402811233|gb|EJX25721.1| hypothetical protein EMP_08007 [Thermotoga sp. EMP]
Length = 474
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 179/282 (63%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFGHQVATD + M +K
Sbjct: 197 AGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFGHQVATDYIRLMRDKLKE 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N D+QL A +A+ N + ++ H++ AF K F D
Sbjct: 256 HNKNLPDKQLINAPFEHPLGQAYYSAMNCAANYAFANREILGHLVRRAFWKVFGR---DT 312
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EE+ VDGK++ L+VHRKG+TR+ P +P Y+ GQPV+I G
Sbjct: 313 RVDLIYDVAHNIAKVEEYEVDGKRRKLVVHRKGATRSLGPGSEKVPSIYREVGQPVIIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY+L GT+K ++TFGST HGAGR L R+ + + LDY+EVL++L + I + S
Sbjct: 373 DMGTASYLLVGTKKAEEKTFGSTAHGAGRVLGRSAALKRLDYREVLDELAEKNIVVMSKS 432
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAPE YK+V VV H +GIS++ ++ P+ V+KG
Sbjct: 433 KKTLVEEAPEVYKDVDRVVQIVHEIGISRRVARMIPLGVVKG 474
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ + K+ L +++++ +P GVGS G I + + L + L G +W+++ GY ED E
Sbjct: 106 YEDVKDRIRPLVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAIKSGYGLEEDLER 165
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
E+ G++ ADPS VS A +RG SD GT
Sbjct: 166 IEDGGKIHPADPSYVSEEAFERG----SDELGT 194
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++++ +P GVGS G I + + L + L G +W+++ GY ED E E
Sbjct: 116 LVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAIKSGYGLEEDLERIE 167
>gi|294102530|ref|YP_003554388.1| hypothetical protein [Aminobacterium colombiense DSM 12261]
gi|293617510|gb|ADE57664.1| protein of unknown function UPF0027 [Aminobacterium colombiense DSM
12261]
Length = 464
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 249/474 (52%), Gaps = 95/474 (20%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G+ + + ++E ++ ++ ++Q+A+VA LPGIVG S +PD+H
Sbjct: 23 MAVPGLIYADHYIETMLEQD--------------SALEQVAHVACLPGIVGYSYAMPDIH 68
Query: 61 ---------------------------SVPSTQWLSDNTMRSSNIWK---------RSPL 84
+ L + ++ ++I S +
Sbjct: 69 WGYGFPIGGVAAFDVNEGIISPGGVGYDISCGVRLLSSYIKLADIKPVLDALTTALFSAV 128
Query: 85 TLGAGNHYA---EIQIVDEIYDK---WAASK-MGIEDV-----------GQVCVMIHSGS 126
G G+ A ++ +D++ K WA + MG++D G +C + S +
Sbjct: 129 PSGVGSSSAIRLSLKDLDDVLRKGARWAVKEGMGMQDDLDRTEEGGCLDGALCEFVSSRA 188
Query: 127 RGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
+ G +Q+ T +GNH+ EIQ+VDEI+DK AAS+M +E G + VMIH GSRG GHQV
Sbjct: 189 KERGKNQLGTLGSGNHFLEIQVVDEIFDKAAASQMNLES-GSITVMIHCGSRGLGHQVCD 247
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA 237
D L M +AM + I+ DRQL CA I S + + + A F + V+ D
Sbjct: 248 DYLKVMRRAMAKYKIDVPDRQLCCAPIQSEEGQQYIGSMKAAANFAMANRQIIGSVVRDV 307
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
FA+ F P + +YDVSHN+A E+H+ +G+++ + VHRKG+TRAF
Sbjct: 308 FAQFFPGKP----LFPVYDVSHNMAHIEKHIWEGRKREVCVHRKGATRAF---------- 353
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
GQPVLI G+MGT SYVL GT+K E+F STCHGAGR LSR ++ + Q ++ +
Sbjct: 354 ---EGQPVLIPGSMGTASYVLVGTKKAEMESFASTCHGAGRVLSRNEAVKRTRGQNLVRE 410
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +G++++ S + + EE PE+YK+++ VV+ H +S K KL+PVAVIKG
Sbjct: 411 MADRGVTVKADSFRTLGEEMPEAYKDISAVVEVVHQAQLSLKVAKLKPVAVIKG 464
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 455 LREGYI-WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
L YI A+ K + L ++F +P GVGS I ++ +DL++ L G W+++EG
Sbjct: 103 LLSSYIKLADIKPVLDALTTALFSAVPSGVGSSSAIRLSLKDLDDVLRKGARWAVKEGMG 162
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D + EE G + A VS RAK+RG Q+
Sbjct: 163 MQDDLDRTEEGGCLDGALCEFVSSRAKERGKNQL 196
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVGS I ++ +DL++ L G W+++EG +D + E
Sbjct: 120 LTTALFSAVPSGVGSSSAIRLSLKDLDDVLRKGARWAVKEGMGMQDDLDRTE 171
>gi|386811826|ref|ZP_10099051.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386404096|dbj|GAB61932.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 483
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 179/282 (63%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ V EIY++ A +G+E +V +++H+GSRG G+Q+ D + M A +
Sbjct: 203 SGNHFVEVGYVSEIYNEKIAHVLGLEK-DRVTIVVHTGSRGLGYQICDDFIRVMIDASRE 261
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+IE DRQL CA I S + + + A + + H + ++F + N +P D
Sbjct: 262 YHIELPDRQLCCAPIKSPQGQEYLSAMACAANYAFANRQMITHWVRESFERTLNISPKDA 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV HNIAK EEHMVDG++K + VHRKG+TR+FPP+HP IP Y +TGQPVLI G
Sbjct: 322 QLSLLYDVCHNIAKFEEHMVDGQKKRVCVHRKGATRSFPPYHPDIPDAYAITGQPVLIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYVL GTE +TFGSTCHGAGR +SR ++ + + + +L+ +GI +R S
Sbjct: 382 DMGRYSYVLVGTENAYTDTFGSTCHGAGRVMSRNQAIKTAKGRSIAQELKEKGILVRADS 441
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EE E+YK+V +VV+ GIS+K +L+P+ VIKG
Sbjct: 442 RATLDEELSEAYKDVAEVVNVVEHAGISRKVAQLKPLCVIKG 483
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYI 513
L+ G E E L ++F +IP GVGS + I ++ ++ + L+ G W++ +GY
Sbjct: 105 LKTGLYRVEIINKLESLVNALFINIPSGVGSHRKDIRLSLQEEKNVLKNGARWAVSQGYG 164
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED + EE G + A+P VS RA +RG Q+
Sbjct: 165 AKEDLAYIEENGCIAGANPEFVSNRALERGRAQL 198
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+GV + +++ MLEE+R ++Q+ NV+ LPGI+ S+G+PD+H
Sbjct: 24 MQVDGVVYADEN----MLEEIRKD----------ESLQQVINVSHLPGILLHSLGMPDIH 69
>gi|339256438|ref|XP_003370408.1| replication factor C subunit [Trichinella spiralis]
gi|316964983|gb|EFV49850.1| replication factor C subunit [Trichinella spiralis]
Length = 392
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 165/368 (44%), Positives = 194/368 (52%), Gaps = 74/368 (20%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
M V+G F+VN +LE LM EELR C G G F P VKQI
Sbjct: 30 MRVDGYFYVNKNLENLMFEELR-LCSKGGGGCFQPAVKQIGNVASLPGVVWRSIGLPDIH 88
Query: 42 --------NVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
NVAA PG VG + DV V TQ L D
Sbjct: 89 AGYGFAIGNVAAFDVDDPAAVISPGGVGFDINCGVRLIRTNLSESDVQPVKEQLTQCLFD 148
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ R + + + +++ + E Y WA K E+ G++
Sbjct: 149 --FIPVGVGSRGIIPINGRDFEECLEMGMDWTLREGYS-WAEDKEHCEEYGRMLEADPAK 205
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHY E+Q+V+EIYDK AA +MGI+ GQVCVMIH GSRG
Sbjct: 206 VSTRAKKRGL-PQLGTLGAGNHYGEVQVVEEIYDKHAARRMGIDRKGQVCVMIHCGSRGL 264
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV+M+KAM R+NI+ NDRQLACA + S K A A F
Sbjct: 265 GHQVATDALVEMDKAMLRNNIKLNDRQLACAPLKSKEGQNYLKGMAAAANFAWVNRSCMT 324
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
AFAK F TPDDLDM V+YDVSHNIAK EEHMV+GK KTL VHRKGSTRAFPPHH
Sbjct: 325 FCARQAFAKIFQCTPDDLDMQVVYDVSHNIAKIEEHMVEGKLKTLCVHRKGSTRAFPPHH 384
Query: 292 PLIPVDYQ 299
PLIPVDYQ
Sbjct: 385 PLIPVDYQ 392
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 70/79 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q +FD IPVGVGS+GIIP+N RD EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 140 EQLTQCLFDFIPVGVGSRGIIPINGRDFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 199
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 200 EADPAKVSTRAKKRGLPQL 218
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L Q +FD IPVGVGS+GIIP+N RD EE LEMGMDW+LREGY WAEDKEH E +
Sbjct: 138 VKEQLTQCLFDFIPVGVGSRGIIPINGRDFEECLEMGMDWTLREGYSWAEDKEHCEEYGR 197
Query: 474 SMFDHIPVGVGSK 486
M + P V ++
Sbjct: 198 -MLEADPAKVSTR 209
>gi|288559683|ref|YP_003423169.1| hypothetical protein mru_0426 [Methanobrevibacter ruminantium M1]
gi|288542393|gb|ADC46277.1| hypothetical protein mru_0426 [Methanobrevibacter ruminantium M1]
Length = 482
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q ++E+YD A G+E G V +MIHSGSRG GHQ+ +D L +M+KA +
Sbjct: 202 SGNHFLEVQKIEEVYDDNVAKAFGLEP-GNVTIMIHSGSRGCGHQICSDYLRKMDKAYRN 260
Query: 196 DNIETNDRQLACARINSNKN----KAFAKQFNTTPDDLDM--HVIYDAFAKQFNTTPDDL 249
I+ DRQLACA I+S + KA A N + M H + +F + F +D+
Sbjct: 261 YKIKLPDRQLACAPIDSPEATGYLKAMAAGANYAWANRQMMSHWVRQSFEEVFKRDAEDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M IYDV+HNIAK E H V +LVHRKG+TRAF P IP +Y+ GQPVLI G
Sbjct: 321 GMSTIYDVAHNIAKKEVHKVKNSHMEVLVHRKGATRAFCPGRREIPKEYRDVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SY+L GT+ M+ETFGST HGAGR LSR +++ +++ +L +GI ++ S
Sbjct: 381 TMGTASYILHGTDVAMEETFGSTAHGAGRVLSRTAAKKQYTAKDIEKELNDKGIHVKANS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAP +YKNV VV T H GI+K K+ P+AV KG
Sbjct: 441 APVLAEEAPGAYKNVDSVVKTSHDAGIAKLVAKVVPLAVTKG 482
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E K H + L + +F +IP GVGSKG I + ++ E L+ G W++ G+ W
Sbjct: 105 LRTNLTEDEIKPHLKELTEVLFKNIPSGVGSKGQIRLKDNEINEVLDYGAWWAVERGFGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED + EE GRM A+ VS +AKKRG+PQ+
Sbjct: 165 EEDLKFLEENGRMEEAESEVVSKKAKKRGVPQL 197
>gi|86607157|ref|YP_475920.1| hypothetical protein CYA_2537 [Synechococcus sp. JA-3-3Ab]
gi|86555699|gb|ABD00657.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
Length = 476
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 174/282 (61%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VDEIYD AA G++ G+V + IH GSRG GHQ+ T+ L +M++A K
Sbjct: 200 SGNHYLEVQVVDEIYDPKAAESFGLKQ-GEVVITIHCGSRGLGHQIGTEYLKKMQQAAKE 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
IE DR+LACA + S +++ + + H + FA+ F DL
Sbjct: 259 HGIELPDRELACAPLKSKVGQSYLGAMRAAINCALANRQIITHWVRQVFAELFPKAELDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H+++GK++ L VHRKG+TRAF P HP IP ++ GQPV+IGG
Sbjct: 319 ----IYDVSHNTCKEETHVIEGKKRRLFVHRKGATRAFGPGHPEIPQAFRSIGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GTE+ + S CHGAGRA+SR ++ + QE++ +L +G+ +R S
Sbjct: 375 SMGTASYILVGTEQSEALSLSSACHGAGRAMSRNQALKAWTGQEIVEQLRRRGVIVRSPS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP++YKNV VV I+K +LRP+ IKG
Sbjct: 435 LRGVAEEAPQAYKNVDKVVRAADQAKIAKLVARLRPILCIKG 476
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+LR G E +E E LA +++ +PVG+GS+ I ++ +++E LE G +W++ +GY
Sbjct: 102 TLRTGLTREEVEEAAEPLANALYASVPVGLGSRSKISLSDKEMEAMLEGGAEWAVAQGYG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
ED E EE+GRM A PS+VS A++R
Sbjct: 162 KKEDLERIEEHGRMRGAMPSEVSAYARER 190
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E LA +++ +PVG+GS+ I ++ +++E LE G +W++ +GY ED E E
Sbjct: 117 EPLANALYASVPVGLGSRSKISLSDKEMEAMLEGGAEWAVAQGYGKKEDLERIE 170
>gi|148270555|ref|YP_001245015.1| hypothetical protein Tpet_1426 [Thermotoga petrophila RKU-1]
gi|147736099|gb|ABQ47439.1| protein of unknown function UPF0027 [Thermotoga petrophila RKU-1]
Length = 474
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 178/282 (63%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFGHQVATD + M +K
Sbjct: 197 AGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFGHQVATDYIRLMRDKLKE 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N D+QL A +A+ N + ++ H++ AF K F D
Sbjct: 256 HNKNLPDKQLINAPFEHPLGQAYYSAMNCAANYAFANREILGHLVRKAFWKVFGR---DT 312
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EE+ VDGK++ L+VHRKG+TR+ P +P Y+ GQPV+I G
Sbjct: 313 RVDLIYDVAHNIAKVEEYEVDGKRRKLVVHRKGATRSLGPGSEKVPSIYREVGQPVIIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY+L GT+K ++ FGST HGAGR L R+ + + LDY+EVL++L + I + S
Sbjct: 373 DMGTASYLLVGTKKAEEKAFGSTAHGAGRVLGRSAALKKLDYREVLDELAEKNIVVMSKS 432
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAPE YK+V VV H +GIS++ ++ P+ V+KG
Sbjct: 433 KKTLVEEAPEVYKDVDRVVQIVHEIGISRRVARMIPLGVVKG 474
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ + K+ L +++++ +P GVGS G I + + L + L G +W+++ GY ED E
Sbjct: 106 YEDVKDRIRPLVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKAGYGLEEDLER 165
Query: 521 CEEYGRMLNADPSKVSMRAKKRG 543
E+ G++ ADPS VS A +RG
Sbjct: 166 IEDGGKIHPADPSHVSEEAFERG 188
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++++ +P GVGS G I + + L + L G +W+++ GY ED E E
Sbjct: 116 LVEAIYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKAGYGLEEDLERIE 167
>gi|383786158|ref|YP_005470727.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109005|gb|AFG34608.1| hypothetical protein Ferpe_0469 [Fervidobacterium pennivorans DSM
9078]
Length = 471
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 179/282 (63%), Gaps = 12/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+V+E+YD+ AS GI+ G + ++IH+GSRGFGHQ+ATD + M +K
Sbjct: 196 AGNHFIEIQLVEEVYDEEIASVFGIKK-GDITILIHTGSRGFGHQIATDYIKYMRDNLKD 254
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
N D+QL A S +A+ N + + H+I AF +
Sbjct: 255 HNKNLPDKQLINAPFKSEWGQAYYSAMNCAANYAFANRQIITHMIRKAFKSVVG-----M 309
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++ ++YDV+HNIAK EE+ +DG+++ ++VHRKG+TRAF P + +P ++ TGQPV+I G
Sbjct: 310 NVRLVYDVAHNIAKVEEYEIDGRKRKVIVHRKGATRAFGPGNAALPEIFKKTGQPVIIPG 369
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT+K + TFGST HGAGRAL R ++ R L VL +LES+GI I S
Sbjct: 370 SMGTASYILVGTKKAEEMTFGSTAHGAGRALGRREATRELTVNHVLKELESKGIKIMAKS 429
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAPE+YKNV VV +GIS K K P+ V+KG
Sbjct: 430 KKGIVEEAPEAYKNVDKVVQIVDELGISLKIAKCIPLGVVKG 471
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K++ E L + +++ +PVGVG + + D ++ +E G+ + GY ED E+
Sbjct: 109 KKNLESLIKRIYESVPVGVGETSDLRFSKNDFKKIVEQGVRKVIEMGYGTEEDLLRIEDR 168
Query: 525 GRMLNADPSKVSMRAKKRG 543
G + + D S VS A +RG
Sbjct: 169 GTLEDCDFSDVSEEAYERG 187
>gi|217966567|ref|YP_002352073.1| hypothetical protein Dtur_0127 [Dictyoglomus turgidum DSM 6724]
gi|217335666|gb|ACK41459.1| protein of unknown function UPF0027 [Dictyoglomus turgidum DSM
6724]
Length = 486
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 252/478 (52%), Gaps = 85/478 (17%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+G+ F +D L +E++ P +Q+ANVA+LPGI+ S+ +PD+H
Sbjct: 27 MKVDGIIFADDKL----MEDIVKDQSP----------EQVANVASLPGIIKYSLAMPDIH 72
Query: 61 ---------------------------------SVPSTQWLSDNTMRS-----SNIWKRS 82
+ T ++ M ++ +
Sbjct: 73 WGYGFPIGGVAAMKKKGGVISPGGVGYDINCGVRLIRTNLSKEDVMPRLKELVDALFDKI 132
Query: 83 PLTLGA-GNHYAEIQIVDEIYDKWA--ASKMG---------IEDVGQVC------VMIHS 124
P +G+ G+ + + +DE+ +K A A K G IE+ G++ V +
Sbjct: 133 PAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWREDLEHIEERGRLSYADPDKVSKKA 192
Query: 125 GSRG-FGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
RG F +GNH+ E+Q+V I++ A K+G+ QV VM+H+GSRG GHQVA
Sbjct: 193 KERGEFQLGTLGSGNHFLEVQVVSRIFEPDIADKLGLFP-DQVVVMVHTGSRGLGHQVAE 251
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA 237
D + M+ AMK+ IE D QLACA +S + + + A F + H + +
Sbjct: 252 DYIRIMKNAMKKYGIEVPDIQLACAPFDSPEGQDYFSAMCAAANFAWANRQMITHWVREV 311
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
F + F + + L M +IYDV+HNIAK EEH +DGK + ++VHRKG+TRAFP HP +P
Sbjct: 312 FEEIFRESAESLGMKLIYDVAHNIAKLEEHDIDGKLEEVIVHRKGATRAFPAGHPDLPEA 371
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAK----SRRNLDYQE 353
Y+ GQPV+I G MG S+VL G K M+ FGSTCHGAGR SR+K RR E
Sbjct: 372 YKEIGQPVIIPGDMGRSSFVLIGLPKAMELAFGSTCHGAGRTQSRSKLLKSGRRAY---E 428
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +L +GI +R AS ++EEA E+YKNV DVV+ H G+SK+ +++P+AVIKG
Sbjct: 429 IEQELLEKGILVRAASKSSLVEEASEAYKNVVDVVNVVHNAGLSKRVAQMKPIAVIKG 486
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
+ L ++FD IP GVGS+G + + ++L+E LE G W++++GY W ED EH EE GR
Sbjct: 120 RLKELVDALFDKIPAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWREDLEHIEERGR 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ ADP KVS +AK+RG Q+
Sbjct: 180 LSYADPDKVSKKAKERGEFQL 200
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++FD IP GVGS+G + + ++L+E LE G W++++GY W ED EH E
Sbjct: 122 KELVDALFDKIPAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWREDLEHIE 175
>gi|88604404|ref|YP_504582.1| hypothetical protein Mhun_3181 [Methanospirillum hungatei JF-1]
gi|88189866|gb|ABD42863.1| protein of unknown function UPF0027 [Methanospirillum hungatei
JF-1]
Length = 477
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 180/282 (63%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+V+EIYD+ AA G+E GQVC+M+H GSRG GHQV TD L +E A+ +
Sbjct: 199 AGNHFLEIQVVEEIYDEEAARTFGVEQ-GQVCMMVHCGSRGLGHQVCTDHLQVLEHAVSK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+I+ D+QLACA + S + KA+ A + + H I + DD+
Sbjct: 258 YHIQLPDKQLACAPLTSPEGKAYFGGMAAAANYAWANRQIITHQIRSVLTRMSGIGYDDI 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDV+HN+AK EEH +DGK + + VHRKG+TRAF P P +P DY GQPV+I G
Sbjct: 318 RL--VYDVAHNVAKIEEHEIDGKTRKVCVHRKGATRAFGPKCPDVPADYTHVGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ SY+L GT+ M TFGSTCHGAGR LSR+++++ + + + L GI ++
Sbjct: 376 SMGSSSYLLKGTDVAMNRTFGSTCHGAGRVLSRSQAKKKIQGKNIRETLGRAGIMVKAPH 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP++YK+ ++VV H +G+S+ +L P+ VIKG
Sbjct: 436 DGAIAEEAPDAYKSSSEVVSVVHNLGLSRLVARLEPLGVIKG 477
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ + ++FD +PVGVG++ + ++ + LE+ + G +++ EGY ++D HCEE GRM
Sbjct: 116 KEILDNLFDAVPVGVGARSSLRLSEKQLEKMMTDGARFAVAEGYGNSDDITHCEEQGRMK 175
Query: 529 NADPSKVSMRAKKRGLPQ 546
ADP+ VS +A+ RG+PQ
Sbjct: 176 EADPAHVSRKARSRGVPQ 193
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 395 GISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS 454
G+ T L+P + + + + ++FD +PVGVG++ + ++ + LE+ + G ++
Sbjct: 99 GVRLLTTPLKPSDLAQ----KKEILDNLFDAVPVGVGARSSLRLSEKQLEKMMTDGARFA 154
Query: 455 LREGYIWAEDKEHFE---RLAQSMFDHIPVGVGSKGI 488
+ EGY ++D H E R+ ++ H+ S+G+
Sbjct: 155 VAEGYGNSDDITHCEEQGRMKEADPAHVSRKARSRGV 191
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 15/60 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M+V G FF++D L K + E ++Q+A+VA +PGI+ S+ +PD+H
Sbjct: 23 MHVPGRFFLSDELTKTLEEG---------------ALQQLAHVATMPGIIHNSLAMPDIH 67
>gi|337285622|ref|YP_004625095.1| hypothetical protein Thein_0246 [Thermodesulfatator indicus DSM
15286]
gi|335358450|gb|AEH44131.1| protein of unknown function UPF0027 [Thermodesulfatator indicus DSM
15286]
Length = 476
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 239/476 (50%), Gaps = 86/476 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G F + L + M E++R +Q+ NVA LPGIV S+ +PD H
Sbjct: 22 MRVPGRIFASKKLIEEMDEKVR---------------EQVTNVACLPGIVRASIAMPDAH 66
Query: 61 ---------------------SVPSTQWLSDNTMRS------------------SNIWKR 81
SV + +RS ++
Sbjct: 67 WGYGFPIGGVAAFDPDDEGIISVGGVGYDISCGVRSLRTGLKREEVEPVLEELIDELFHT 126
Query: 82 SPLTLGA-GNHYAEIQIVDEIY---DKWAASK--------MGIEDVGQV------CVMIH 123
P +G+ G + +DE+ +WA +K IE+ G + CV I
Sbjct: 127 IPAGVGSEGKIKLSVSQLDEVLVGGARWAVAKGYGFPEDLEYIEEKGCLPGADPKCVSIE 186
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+ R QV T +GNHY EIQ V EIY AA G+E +G V V IH GSR GHQ+
Sbjct: 187 AKKRQH-RQVGTLGSGNHYLEIQYVAEIYHPEAAEAFGLE-LGDVVVSIHCGSRALGHQI 244
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
ATD L + KA K+ I +R+L CA I S + + + + + + H++
Sbjct: 245 ATDYLKVLAKASKKYGIPIKERELVCAPIRSPEGEQYYRAMACGVNCALANRQVITHLVR 304
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ FA+ + +IYDVSHN K EEH V+GK K L VHRKG+TRA+ P +P
Sbjct: 305 EVFAEVLPQA----RISLIYDVSHNTCKIEEHEVNGKMKKLYVHRKGATRAWGPGRRELP 360
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPV+IGG+MGT SY+L GT++G ++ FGS CHGAGR +SR ++ + +++
Sbjct: 361 ERYRHVGQPVIIGGSMGTASYILVGTKEGEEKAFGSACHGAGRTMSRHQALKRWRADKII 420
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+L +GI +R S + ++EEAPE+YK+V +VV+ H G+++K KL P+ IKG
Sbjct: 421 AELRKRGIIVRAKSKRGLVEEAPEAYKDVIEVVEAAHRAGLARKVVKLLPMGCIKG 476
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%)
Query: 475 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 534
+F IP GVGS+G I ++ L+E L G W++ +GY + ED E+ EE G + ADP
Sbjct: 123 LFHTIPAGVGSEGKIKLSVSQLDEVLVGGARWAVAKGYGFPEDLEYIEEKGCLPGADPKC 182
Query: 535 VSMRAKKRGLPQV 547
VS+ AKKR QV
Sbjct: 183 VSIEAKKRQHRQV 195
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 422 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+F IP GVGS+G I ++ L+E L G W++ +GY + ED E+ E
Sbjct: 123 LFHTIPAGVGSEGKIKLSVSQLDEVLVGGARWAVAKGYGFPEDLEYIE 170
>gi|385809832|ref|YP_005846228.1| hypothetical protein IALB_1250 [Ignavibacterium album JCM 16511]
gi|383801880|gb|AFH48960.1| Hypothetical protein IALB_1250 [Ignavibacterium album JCM 16511]
Length = 484
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ +V+EIY+ A G+ GQV + IH+GSRG G+QV D L + KA ++
Sbjct: 204 SGNHFLEVDVVEEIYEPKVAEVFGLFK-GQVVIQIHTGSRGLGYQVCDDYLKVLLKASEK 262
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D+QLACA I S + +A+ + + MH+ +F + F+ DL
Sbjct: 263 YGFKLPDKQLACAPIKSQEGQAYLAAMQAAANFAWNNRQVIMHLAKKSFLETFDMKESDL 322
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
H++YDV HNIAK E+H + K + VHRKG+TRAFPP +IP Y+ GQPVLI G
Sbjct: 323 GFHLVYDVCHNIAKIEKHQIGNVIKEVCVHRKGATRAFPPGSEMIPEKYKSVGQPVLIPG 382
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYV GTEK M+ETFGS+CHGAGR LSR K+ + ++++++L+ +G+ I+
Sbjct: 383 DMGRYSYVAVGTEKAMEETFGSSCHGAGRNLSRHKAMKEAKGRDLVSELKKKGVIIQAKG 442
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + EE P +YK+V DVVD H GI++K KL+PV VIKG
Sbjct: 443 YKTIAEEMPAAYKDVADVVDVMHKEGITRKVAKLKPVGVIKG 484
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEA-LEMGMDWSLREGYIWAEDKEHC 521
E + E L +F +IP GVG+ G I ++ + LE G W++ D +
Sbjct: 114 EIQPKLEPLITKLFQNIPTGVGASGAIKKLSKSDLKKILEKGSVWAVENNLGTQSDIQFT 173
Query: 522 EEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
EE G + NAD S VS RA +RG +D+ GT
Sbjct: 174 EESGTLKNADFSVVSERALERG----ADQAGT 201
>gi|302037832|ref|YP_003798154.1| hypothetical protein NIDE2519 [Candidatus Nitrospira defluvii]
gi|300605896|emb|CBK42229.1| conserved protein of unknown function UPF0027 [Candidatus
Nitrospira defluvii]
Length = 483
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 178/284 (62%), Gaps = 12/284 (4%)
Query: 136 AGNHYAEIQIVDE--IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
+GNHY EIQ++ + IYD+ A+ MG+ QV VM+H GSRGFGHQVA+D L EKAM
Sbjct: 204 SGNHYLEIQVLSDKGIYDRATAAAMGLTGRDQVVVMVHCGSRGFGHQVASDYLKVFEKAM 263
Query: 194 KRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPD 247
+R I D+QLACA S + + + N + + H I +AF F +
Sbjct: 264 RRYGISVKDQQLACAPFRSPEGQDYFGAMNCAANTAFANRQVITHQIREAFETVFGESAR 323
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
L M +IYDV+HNIAK E + + LVHRKG+TRAF P P +P Y+ GQPV+
Sbjct: 324 RLGMQLIYDVAHNIAKVERY----RDGEWLVHRKGATRAFGPGSPELPACYRGIGQPVIC 379
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
GG+M T SY+L GT++ MQETFGST HG+GR +SRA+++R + ++++ ++ GI ++
Sbjct: 380 GGSMETGSYLLVGTDRAMQETFGSTMHGSGRTMSRAQAKRTVRGEQLMRDMKQHGILVKA 439
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEA +YKN++DVV T GI+KK +L+P+ IKG
Sbjct: 440 VSMSGLAEEAGLAYKNISDVVGTVDHAGITKKVAELKPIGNIKG 483
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R +E + E L +F +P GVGS+G + ++ RD + + G W + +GY W
Sbjct: 107 IRTDLSLSEVQPKLELLMTELFRRVPAGVGSRGFVNLSRRDFRDVMRQGAGWCIAKGYGW 166
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED E EE G + ADP+ V+ A +RG+ Q+
Sbjct: 167 EEDLERIEERGCLDGADPTHVTDYAVERGINQL 199
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +F +P GVGS+G + ++ RD + + G W + +GY W ED E E
Sbjct: 121 ELLMTELFRRVPAGVGSRGFVNLSRRDFRDVMRQGAGWCIAKGYGWEEDLERIE 174
>gi|126179595|ref|YP_001047560.1| hypothetical protein Memar_1651 [Methanoculleus marisnigri JR1]
gi|125862389|gb|ABN57578.1| protein of unknown function UPF0027 [Methanoculleus marisnigri JR1]
Length = 478
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 175/288 (60%), Gaps = 11/288 (3%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T AGNH+ E+Q+ EI D AA GI + GQVC M+H GSRG GHQVATD L +
Sbjct: 194 QIGTLGAGNHFLEVQVAREIVDPEAAKAFGIAE-GQVCFMVHCGSRGLGHQVATDHLRTL 252
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFN 243
E A+ + I DRQLACA I+S + +A+ A + T + MH F F
Sbjct: 253 EGALPKYGIRLPDRQLACAPIDSPEGRAYYGGMVSAANYAWTNRQVIMHEARKVFVDLFG 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
D+ M ++YDV+HN+AK E H VDG + VHRKG+TRAF P +P +Y GQ
Sbjct: 313 IDYDE--MRLVYDVAHNVAKFERHDVDGVSTEVCVHRKGATRAFGPGAEGVPREYAGIGQ 370
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PV+I G+MGT SY+L GT M++T+GSTCHGAGR LSR+K+++ + +E+ +L +GI
Sbjct: 371 PVIIPGSMGTSSYLLHGTSTAMEKTWGSTCHGAGRVLSRSKAKKEVRGKELRERLAGEGI 430
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R S + EEAP YK +VV H G+S +L P+ VIKG
Sbjct: 431 LVRAHSDNALAEEAPAVYKPSREVVRVVHEAGLSDIVARLEPLGVIKG 478
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
L E + +E ERL FD +P GVG+K + ++ +DL + G W++ G
Sbjct: 107 LTEADLARRKRELIERL----FDAVPTGVGAKSSLRVSNKDLSAVMVDGARWAVERGLGT 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D CE G M ADP VS +A++RG+PQ+
Sbjct: 163 EADLVRCEGEGAMPGADPDAVSAKARQRGVPQI 195
>gi|123438712|ref|XP_001310135.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121891892|gb|EAX97205.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 501
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/294 (45%), Positives = 184/294 (62%), Gaps = 14/294 (4%)
Query: 126 SRG-FGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
SRG F GNHY E+Q VD+I D+ AA MG+ + GQVCVMIH+GSRG GHQ+A +
Sbjct: 214 SRGVFQLGTVGCGNHYVELQRVDKILDEKAAKAMGLFE-GQVCVMIHTGSRGLGHQIADE 272
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAF 238
+ ++ + D+QLA S+ + + A F + M+ + AF
Sbjct: 273 MINLCSQSYCPSTLP--DKQLAAPPYTSDVGQKYLACMYAAANFAWCNRQIIMNDVRRAF 330
Query: 239 AKQFNTTPDDL-DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
F D L + H++YDV+HNIAK E+H++DG +KT +VHRKG+TRAF P IP
Sbjct: 331 RDVFR---DKLYETHLVYDVAHNIAKVEKHVIDGVEKTFVVHRKGATRAFGPGRSEIPDR 387
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
Y+ GQP+LIGG+MGT SYVL GT++ M +GSTCHGAGR LSR+K+ R + V +
Sbjct: 388 YRDVGQPILIGGSMGTASYVLIGTDESMMHAWGSTCHGAGRQLSRSKAMRTITQAYVSKQ 447
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ G+ +R A + +M+EAP++YK++ VVD C VGISKK +L P+ VIKG
Sbjct: 448 LKDHGVYLRAADKESIMDEAPDAYKDIKQVVDACQVVGISKKVARLVPMGVIKG 501
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 61/150 (40%), Gaps = 10/150 (6%)
Query: 406 VAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMG-MDWSLREGYIWAED 464
VA + GIY N M H G G+ + D + G + + + G
Sbjct: 73 VATLPGIYRNSFGMPDM--HSGYGFSIGGVAAFDLTDPTSIISPGGVGYDINCGVRLLAT 130
Query: 465 KEHFE-------RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAED 517
FE L + +IPVG+G K N L E L G W+L GY ED
Sbjct: 131 SLTFEDVEPRKKELIDKFYSYIPVGIGGKRPDICNRAGLMEVLVKGAKWALEHGYAIPED 190
Query: 518 KEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E+CEE G + A P +S R RG+ Q+
Sbjct: 191 IENCEENGCLEGARPDLLSERVISRGVFQL 220
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G+F+ + K EEL + + LP + QIA VA LPGI S G+PD+H
Sbjct: 33 MRVPGIFYATPEMVKFQFEELESWMQHRERA--LPSIMQIAFVATLPGIYRNSFGMPDMH 90
Query: 61 S 61
S
Sbjct: 91 S 91
>gi|375095727|ref|ZP_09741992.1| hypothetical protein SacmaDRAFT_3057 [Saccharomonospora marina
XMU15]
gi|374656460|gb|EHR51293.1| hypothetical protein SacmaDRAFT_3057 [Saccharomonospora marina
XMU15]
Length = 472
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 182/305 (59%), Gaps = 11/305 (3%)
Query: 112 IEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 169
+ED V + RG G QV + +GNH+ E+Q V+EIYD AA+ G+ QVCVM
Sbjct: 174 VEDADPSLVSRRAFERGLG-QVGSLGSGNHFLEVQAVEEIYDDTAAAAFGLRR-DQVCVM 231
Query: 170 IHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD-- 227
IH GSRG GHQV TD + ME+ M R +I+ DRQLACA + S + + + +
Sbjct: 232 IHCGSRGLGHQVCTDYVRAMERVMSRYDIQVPDRQLACAPVVSREGGDYLRALAAATNYA 291
Query: 228 DLDMHVIYDAFAKQFNT-TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRA 286
+ ++ + + F + LD+ +YDVSHN+A E H V+G+ + L VHRKG+TRA
Sbjct: 292 RANRQLLTETARRAFESHLGGGLDL--VYDVSHNLATIETHEVNGRARRLCVHRKGATRA 349
Query: 287 FPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSR 346
PP HP +P D TGQP LI GTMGT SYVL G F STCHGAGR R +
Sbjct: 350 LPPRHPRLPADLANTGQPTLIPGTMGTASYVLAGVAG--SPAFHSTCHGAGRTRGRHAAA 407
Query: 347 RNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPV 406
R +D + + +LES+GI++R S K + EEAP +YK++T VV+ G+ +K +L P+
Sbjct: 408 RGVDGRALRQELESRGIAVRGTSWKGLAEEAPGAYKDITAVVEASEGAGLGRKVARLAPL 467
Query: 407 AVIKG 411
V+KG
Sbjct: 468 GVVKG 472
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 496 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
LE L G +++ G+ A D + CE+ GR+ +ADPS VS RA +RGL QV
Sbjct: 143 LERVLTGGAGYAVDSGHGVARDLDRCEDGGRVEDADPSLVSRRAFERGLGQV 194
>gi|408403072|ref|YP_006861055.1| hypothetical protein Ngar_c04520 [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363668|gb|AFU57398.1| uncharacterized protein family UPF0027 [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 491
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 181/283 (63%), Gaps = 7/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+I+D+ AA MG++ VGQ+ V+IH GSRGFGHQ+ TD L E A+++
Sbjct: 209 SGNHFLEVQKVDKIFDERAAKAMGLDQVGQLTVLIHCGSRGFGHQICTDYLRVSESALRK 268
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LAC NS + + + K F + H F + F L
Sbjct: 269 YGLTLADRELACVPNNSKEGEDYRKAMYSALNFAWANRQMITHWTRKTFERVFKAGEGGL 328
Query: 250 DMHVIYDVSHNIAKTEEHMVDGK-QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
DM ++YDV+HNIAK E + VDG+ + ++VHRKG+TRAFP +P Y+ GQPV+I
Sbjct: 329 DMDLVYDVAHNIAKVERYKVDGEGTRDVVVHRKGATRAFPAGMEQVPGKYRGIGQPVIIP 388
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT S++L G +K + +FGST HGAGR +SR+ ++R+ + V + LES+GI ++
Sbjct: 389 GSMGTASWILLGNKKSLDLSFGSTAHGAGRTMSRSAAKRSYTAEGVKSGLESKGIYVKAL 448
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + V+EE P++YK+V V + H++GI+ K +L P+ VIKG
Sbjct: 449 TREGVVEETPDAYKDVDAVANVSHSLGIATKVVRLVPIGVIKG 491
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L +F IP GVGS+G + + +L+E L G+ W++R GY +D E CEE
Sbjct: 122 RPRLKDLVNELFKSIPSGVGSEGAVRLTKAELDELLVEGVRWAVRHGYGTEDDAEVCEES 181
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G M ADP+ VS A+KRG PQ+
Sbjct: 182 GMMAGADPASVSDTARKRGAPQL 204
>gi|118576264|ref|YP_876007.1| hypothetical protein CENSYa_1073 [Cenarchaeum symbiosum A]
gi|118194785|gb|ABK77703.1| conserved hypothetical protein [Cenarchaeum symbiosum A]
Length = 459
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 177/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEI+D+ AAS+MGIE GQV ++ H GSRGFGHQV +D L E+A +
Sbjct: 179 SGNHFLEVQRVDEIHDEEAASRMGIEK-GQVTILTHCGSRGFGHQVCSDYLRTSERATSK 237
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI DR+LAC +S + +++ A F + H F + + +DL
Sbjct: 238 YNISLKDRELACVPNHSEEGESYRGAMAAALNFAWCNRQMISHWTRATFERVMGMSAEDL 297
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDVSHNIAK E H +DGK+K ++VHRKG+TRAFP +P Y+ GQPV I G
Sbjct: 298 GMDLVYDVSHNIAKVERHRIDGKEKDVVVHRKGATRAFPAGRNELPSRYRDLGQPVFIPG 357
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G M+ TFGST HGAGR +SR+++RR + V +L +G+ ++ +
Sbjct: 358 SMGTASWILLGKPGSMELTFGSTAHGAGRTMSRSRARREHTEEGVKKELAGRGVFVKSLT 417
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EEAP++YK+V + H + I+ K +L P+ VIKG
Sbjct: 418 KDGVVEEAPDAYKDVDRIAGVSHDLDIATKVARLVPIGVIKG 459
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +F IP GVGSKG + ++ L+E L G+ W+++ GY
Sbjct: 82 LRTNLTEKETRPKLKELVVDLFSSIPSGVGSKGAVRLDRAQLDEVLTGGVGWAVKNGYGN 141
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D + CEE GRM ADP K+S RA+KRG+PQ+
Sbjct: 142 RNDADACEEGGRMDGADPGKISDRARKRGMPQL 174
>gi|307596344|ref|YP_003902661.1| hypothetical protein Vdis_2242 [Vulcanisaeta distributa DSM 14429]
gi|307551545|gb|ADN51610.1| protein of unknown function UPF0027 [Vulcanisaeta distributa DSM
14429]
Length = 484
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/284 (42%), Positives = 179/284 (63%), Gaps = 8/284 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+V++I+D A ++GIE GQV V+IH+GSRG GHQVATD + E MK+
Sbjct: 201 SGNHFIEIQVVNKIFDANLAKRLGIEQEGQVMVLIHTGSRGLGHQVATDYIRVAENKMKQ 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA +++ + + + T + H + +AF + F PD L
Sbjct: 261 WGLFLPDRELASMPLSTREAQDYLAAMKAAANYAWTNRQIITHWVREAFRRVFGKDPDKL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK E+H++D G + +LVHRKG+TR+FP P IP Y+ GQPVLI
Sbjct: 321 GLEIVYDVAHNIAKIEDHVIDDEGHVRRVLVHRKGATRSFPAGRPEIPPKYRDIGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT SYVL G Q TFG+ HGAGR LSR+ + R L +V + LE++GI +R
Sbjct: 381 PGSMGTASYVLIGLPTSFQVTFGTAPHGAGRTLSRSAAVRMLPPNKVRSALENRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAPE+YKNV V + G++++ + P+ V+KG
Sbjct: 441 AESEIISEEAPEAYKNVDKVAEVAELTGMARRVSRHVPIGVVKG 484
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + L ++F +P GVG G++ ++ DL++ L+ G+DW+L +GY W
Sbjct: 104 LRTNLTEKDVRPKLRELVDTIFKLVPAGVGETGLLKLSFGDLDKVLDEGVDWALSKGYGW 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSS 556
+DK EE+G AD SKVS RAK+RG D GT S
Sbjct: 164 GDDKNFIEEFGHYEGADSSKVSQRAKERG----KDELGTTGS 201
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
L ++F +P GVG G++ ++ DL++ L+ G+DW+L +GY W +DK E
Sbjct: 120 LVDTIFKLVPAGVGETGLLKLSFGDLDKVLDEGVDWALSKGYGWGDDKNFIEEFGH 175
>gi|284103085|ref|ZP_06386065.1| Protein of unknown function, UPF0027 [Candidatus Poribacteria sp.
WGA-A3]
gi|283830287|gb|EFC34527.1| Protein of unknown function, UPF0027 [Candidatus Poribacteria sp.
WGA-A3]
Length = 483
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/284 (43%), Positives = 175/284 (61%), Gaps = 12/284 (4%)
Query: 136 AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
+GNHY E+Q+V D IYD+ AA + GI Q+ +M+H GSRG GHQV TD + EKAM
Sbjct: 204 SGNHYLEVQVVRNDRIYDRHAAEQFGIHGHDQIVIMVHCGSRGLGHQVGTDYVRIFEKAM 263
Query: 194 KRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPD 247
KR I D+QLACA S + + + N + + H I +AF F +P+
Sbjct: 264 KRYGITVKDQQLACAPYQSQEGQHYFAAMNCAANTAFANRQIITHQIREAFRTVFRESPE 323
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+L M IYDV+HNIAK E + +++ LVHRKG+TRAF P P +P ++ TGQPV+
Sbjct: 324 ELGMRQIYDVAHNIAKVERY----EKQDFLVHRKGATRAFGPGSPDVPESFRKTGQPVIC 379
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
GG+M T SY+L GTEK E+FGST HGAGR +SRA+++R + + + +GI ++
Sbjct: 380 GGSMETGSYILVGTEKANTESFGSTMHGAGRTMSRAQAKRTVHGATLQRSMAERGILVKA 439
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEA +YKN+ DVV++ GI++K +L P+ IKG
Sbjct: 440 VSMSGLAEEAGIAYKNIADVVESVDTAGITRKVAELLPIGNIKG 483
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R ++ K + L +F +P GVGSKG + ++ R L+E + G WS+ +GY W
Sbjct: 107 IRTDLTLSDVKPRLDALMTELFRTVPAGVGSKGFVKLSRRGLQEVMRKGARWSVDQGYGW 166
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D H EE G + ADP VS +A +RG+ Q+
Sbjct: 167 DSDLTHTEEEGCLAGADPEHVSEQACQRGMAQL 199
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +F +P GVGSKG + ++ R L+E + G WS+ +GY W D H E
Sbjct: 123 LMTELFRTVPAGVGSKGFVKLSRRGLQEVMRKGARWSVDQGYGWDSDLTHTE 174
>gi|354565476|ref|ZP_08984651.1| protein of unknown function UPF0027 [Fischerella sp. JSC-11]
gi|353549435|gb|EHC18877.1| protein of unknown function UPF0027 [Fischerella sp. JSC-11]
Length = 484
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 188/296 (63%), Gaps = 13/296 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RGF +Q+ T +GNHY EIQ+ + IYD+ A +GI QV VM H GSRGFGHQVA
Sbjct: 191 RGF-NQIGTLGSGNHYLEIQVARPENIYDQELARSLGITIPNQVVVMFHCGSRGFGHQVA 249
Query: 183 TDALVQMEKAMK-RDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD L K M+ + I+ DR+LACA NS + +A+ + + +H I
Sbjct: 250 TDYLQTFLKVMESKYGIKILDRELACAPFNSPEGQAYFAAMKCGINMSFANRQVILHQIR 309
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F++ +P++L MH+IYDV+HN AK E H++D ++++LLVHRKG+TRAF P +P
Sbjct: 310 EVFSEILGRSPENLGMHMIYDVAHNTAKLERHIIDSQERSLLVHRKGATRAFAPGMKDVP 369
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPV+IGG+M T SY+L G G ++TF ST HG+GR +SRAK+R+ +++
Sbjct: 370 ERYKNIGQPVIIGGSMETGSYLLVGVPSG-EQTFFSTAHGSGRTMSRAKARKIYRGEKLK 428
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ES+GI +R S + EEA +YK++ DV++ GISK+ KL P+ IKG
Sbjct: 429 KEMESRGIYVRSTSYSGLAEEAGGAYKDIDDVIEAAELAGISKRVVKLTPIGNIKG 484
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ + K + ++L +++ +P GVGS G + ++ + + +E G W +R GY W ED E
Sbjct: 110 YDQVKPYIKKLVDRLYERVPAGVGSTGFVKLSRNEFCKVVEEGAQWCIRNGYGWEEDLEL 169
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
EE G + AD SK+S +A RG Q+
Sbjct: 170 VEENGCIQGADASKISEKAIDRGFNQI 196
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
++L +++ +P GVGS G + ++ + + +E G W +R GY W ED E E
Sbjct: 118 KKLVDRLYERVPAGVGSTGFVKLSRNEFCKVVEEGAQWCIRNGYGWEEDLELVE 171
>gi|219851657|ref|YP_002466089.1| hypothetical protein Mpal_1018 [Methanosphaerula palustris E1-9c]
gi|219545916|gb|ACL16366.1| protein of unknown function UPF0027 [Methanosphaerula palustris
E1-9c]
Length = 477
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 171/282 (60%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q+V EI D AA G+E GQVCVMIH GSRG GHQV TD L +E A K+
Sbjct: 199 AGNHFLEVQVVGEIADHKAAGLFGVEQ-GQVCVMIHCGSRGLGHQVCTDHLKTLEAATKK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA ++S + A+ A + + H + F++ F +P++
Sbjct: 258 YGINLPDRQLACAPLDSPEGTAYFGAMAAAANYAWANRQMITHQVRQVFSRAFRISPEE- 316
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H V+G + VHRKG+TRAF P P +P + GQPV+I G
Sbjct: 317 -MPLVYDVAHNIAKFETHQVNGVATEVCVHRKGATRAFGPGSPDLPPELTSIGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT M+ TFGSTCHGAGR +SR++++R Q+V +L GI +R +
Sbjct: 376 SMGTSSYLLHGTSTAMERTFGSTCHGAGRVMSRSEAKRTFTGQQVKARLGESGILVRAPN 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP YK +V+ G+S +L P+ VIKG
Sbjct: 436 DAAIAEEAPGVYKPSGEVIRVVIEAGLSAGVARLDPLGVIKG 477
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L + +F +P GVG+K P+++ DL L G W++ +G+ D CEE GRM A
Sbjct: 118 LIEELFHAVPTGVGAKSARPVSSSDLTGILTDGAGWAVEQGFGTEHDLVRCEEQGRMKEA 177
Query: 531 DPSKVSMRAKKRGLPQ 546
+P VS +A++RG+PQ
Sbjct: 178 NPDAVSQKARQRGIPQ 193
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 15/60 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G FF+++ LE + E ++Q+ANVA +PGI+ S+ +PD+H
Sbjct: 23 MKVSGRFFLSNGLEATLEEG---------------AIRQLANVATMPGIINHSLAMPDIH 67
>gi|386359712|ref|YP_006057957.1| hypothetical protein TtJL18_0257 [Thermus thermophilus JL-18]
gi|383508739|gb|AFH38171.1| hypothetical protein TtJL18_0257 [Thermus thermophilus JL-18]
Length = 958
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 181/288 (62%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDEIYD+ AA G+ GQ+ V+IH+GSRG GHQV D + +
Sbjct: 677 QIGTLGSGNHFLEVQYVDEIYDEEAAEAFGLFK-GQITVLIHTGSRGLGHQVCQDYVERF 735
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
KA R IE D+QLA A I S + + + + + L H + +AF K
Sbjct: 736 LKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEK-VG 794
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP +P +Y+ GQ
Sbjct: 795 FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQ 850
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTEK M+ +FGS+CHGAGR +SR ++++ + ++ +L +GI
Sbjct: 851 PVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHGAGRKMSRHQAKKVARERNLVKELAERGI 910
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 911 LVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 958
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+
Sbjct: 601 LADTLYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPW 660
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG PQ+
Sbjct: 661 ANPDKVSERAFERGAPQI 678
>gi|303388185|ref|XP_003072327.1| RtcB-like protein [Encephalitozoon intestinalis ATCC 50506]
gi|303301466|gb|ADM10967.1| RtcB-like protein [Encephalitozoon intestinalis ATCC 50506]
Length = 477
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 194/334 (58%), Gaps = 14/334 (4%)
Query: 82 SPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT--AGNH 139
S L LG + +I DE D G D + S RG +Q+ T +GNH
Sbjct: 154 SILDLGLSHLLKSKEICDE--DVEYCESRGYMDGNSRLIGQKSKGRGL-NQLGTLGSGNH 210
Query: 140 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIE 199
Y E+Q VDE+YD A MGI GQ+ VMIH+GSRG GH V ++L MK +
Sbjct: 211 YLEVQYVDEVYDTEKAEIMGIRK-GQIIVMIHTGSRGLGHGVCHNSL------MKMAGMA 263
Query: 200 TNDRQLACARINSNKNKAFAKQFNTTPDDLDMH--VIYDAFAKQFNTTPDDLDMHVIYDV 257
+ QLAC+R NS +++ + + + +I + K F + +IYDV
Sbjct: 264 PDYGQLACSRFNSEESQEYLLSMGCAANFAFANRAMITKSARKAFEKVFPGSRLELIYDV 323
Query: 258 SHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV 317
HNIAK E+H V GK+ +LVHRKG++RAFPP H IP Y+ GQPV++GG+MGT SY+
Sbjct: 324 CHNIAKKEKHRVHGKEYDVLVHRKGASRAFPPFHADIPWKYKEIGQPVIVGGSMGTYSYI 383
Query: 318 LTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEA 377
L G+EK M+ +FGSTCHGAGR LSR++S+ + V + L SQ I R AS ++EE+
Sbjct: 384 LCGSEKSMELSFGSTCHGAGRVLSRSRSKDLFTQESVRDLLRSQDIVFRCASSPGMVEES 443
Query: 378 PESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P YK+V VV+ A+G++KK +L+P VIKG
Sbjct: 444 PGCYKDVNRVVNLSDAIGLTKKVCRLKPCLVIKG 477
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 464 DKEHF----ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKE 519
D +HF E LA +F+ IP GVG+ + L L++G+ L+ I ED E
Sbjct: 116 DIDHFRACAESLADELFNIIPTGVGNDKGSRIEMSTLNSILDLGLSHLLKSKEICDEDVE 175
Query: 520 HCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+CE G M + + + ++K RGL Q+
Sbjct: 176 YCESRGYM-DGNSRLIGQKSKGRGLNQL 202
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M +V++ L K ++EEL G L + QI++V +LPG++G +GLPD+H
Sbjct: 21 MKTSATIYVDEELRKPLIEELD-------AGVALSSISQISDVCSLPGLIGDVIGLPDIH 73
Query: 61 S 61
+
Sbjct: 74 T 74
>gi|325968173|ref|YP_004244365.1| hypothetical protein VMUT_0652 [Vulcanisaeta moutnovskia 768-28]
gi|323707376|gb|ADY00863.1| hypothetical protein VMUT_0652 [Vulcanisaeta moutnovskia 768-28]
Length = 490
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 178/284 (62%), Gaps = 8/284 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+V++I+D A ++GIE GQV V+IH+GSRG GHQVATD + E MK+
Sbjct: 207 SGNHFIEIQVVNKIFDANLAKRLGIEQEGQVMVLIHTGSRGLGHQVATDYIRVAENKMKQ 266
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA +++ + + + T + H + +AF + F PD L
Sbjct: 267 WGLFLPDRELAAMPLSTKEAQDYLAAMKAAANYAWTNRQIITHWVREAFRRAFGKDPDKL 326
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ ++YDV+HNIAK E+H++D G + +LVHRKG+TR+FP IP Y+ GQPVLI
Sbjct: 327 GLEIVYDVAHNIAKIEDHVIDDEGHVRRVLVHRKGATRSFPAGRLEIPPKYRDIGQPVLI 386
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT SYVL G Q TFG+ HGAGR LSR+ + R L +V + LES+GI +R
Sbjct: 387 PGSMGTASYVLIGLPTSFQVTFGTAPHGAGRTLSRSAAVRMLPPNKVRSTLESRGIIVRS 446
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAPE+YKNV V + G++K+ + P+ V+KG
Sbjct: 447 AESEIISEEAPEAYKNVDKVAEIAELTGMAKRVSRHTPIGVVKG 490
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + L ++F +P GVG G++ ++ DL++ L+ G+DW+L +GY W
Sbjct: 110 LRTNLTEKDVRPKLRELVDTIFKLVPAGVGETGLLRLSFGDLDKVLDDGVDWALSKGYGW 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSS 556
++DK EE+G AD SKVS RAK+RG D GT S
Sbjct: 170 SDDKNFIEEFGHYEGADSSKVSQRAKERG----KDELGTTGS 207
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
L ++F +P GVG G++ ++ DL++ L+ G+DW+L +GY W++DK E
Sbjct: 126 LVDTIFKLVPAGVGETGLLRLSFGDLDKVLDDGVDWALSKGYGWSDDKNFIEEFGH 181
>gi|154249368|ref|YP_001410193.1| hypothetical protein Fnod_0681 [Fervidobacterium nodosum Rt17-B1]
gi|154153304|gb|ABS60536.1| protein of unknown function UPF0027 [Fervidobacterium nodosum
Rt17-B1]
Length = 472
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 121/278 (43%), Positives = 177/278 (63%), Gaps = 4/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ+V+E+YD+ A G+ G + ++IH+GSRGFGHQ+ATD + M +K
Sbjct: 197 AGNHFIEIQVVEEVYDEKIAKVFGLGK-GDITILIHTGSRGFGHQIATDYIKIMRDNLKE 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQFNTTPDDLDMHV 253
N D+QL A NS + + N + + +I K F + LD+ +
Sbjct: 256 HNKNLPDKQLINAPFNSKWGQMYYSAMNCAANYAFANRQIITHLIRKVFKSVAG-LDVKL 314
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDV+HNIAK EE+ +DGK++ ++VHRKG+TRAF P +P +P ++ TGQPV+I G+MGT
Sbjct: 315 VYDVAHNIAKIEEYEIDGKKRKVIVHRKGATRAFGPGNPHLPEIFKETGQPVIIPGSMGT 374
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GT+K + TFGST HGAGR L R ++ R L + V+ +L+ +G+ + S K +
Sbjct: 375 ASYILAGTKKAEEMTFGSTAHGAGRTLGRREATRELSVERVIRELDKKGVKLLAKSKKGI 434
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EEAPE+YK+V V+ +GIS K K P+ VIKG
Sbjct: 435 VEEAPEAYKDVDKVIKVVDELGISLKVAKCVPIGVIKG 472
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + + + + +++ +PVGVG + + D + + G ++ G+ + ED E E+Y
Sbjct: 110 KSNIDTIIKRIYESVPVGVGETSELNFSKNDFKRIVTNGAKEVIKMGFGYDEDLERIEDY 169
Query: 525 GRMLNADPSKVSMRAKKRG 543
G + N D S VS A KRG
Sbjct: 170 GHIQNCDFSDVSEEAIKRG 188
>gi|305662579|ref|YP_003858867.1| hypothetical protein [Ignisphaera aggregans DSM 17230]
gi|304377148|gb|ADM26987.1| protein of unknown function UPF0027 [Ignisphaera aggregans DSM
17230]
Length = 480
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 180/282 (63%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IY A K+GI + GQ+ +M+H+GSRG GHQVA+D LV ME+AM++
Sbjct: 200 SGNHFLEIQVVDKIYIPEVAKKVGIYEEGQITIMVHTGSRGLGHQVASDYLVIMERAMRK 259
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+LA NS + + + A + L H ++FAK + P+ L
Sbjct: 260 YGINVPDRELAAVPFNSQEGQDYFAAMAAAANYAWANRQLITHWARESFAKAMGSDPEHL 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK EEH + ++ L+VHRKG+TRAFP HP IP D++ GQ VLI G
Sbjct: 320 GIKMIYDVAHNIAKVEEHEYENRRIKLVVHRKGATRAFPKGHPEIPPDHREFGQIVLIPG 379
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+ ++ QET+ S HGAGR +SRA + R+ +EV+ LE +GI +R A+
Sbjct: 380 SMGTASYITIPGQRA-QETWWSAPHGAGRWMSRAAAIRSKSPKEVIEMLEKRGIVVRAAT 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EE PE+YK+V VVD I+ +L P+AVIKG
Sbjct: 439 LRELSEETPEAYKDVDRVVDVARRANIAIPVARLVPIAVIKG 480
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + L + +F +IP GVG+ G I + R+L++ LE G W+ R+GY D +H E
Sbjct: 113 KGKIKELVEYLFRNIPSGVGATGKIRLTERELDQVLEEGAQWAYRQGYGTEHDIDHTESR 172
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G++ AD SKVS RAK RG PQ+
Sbjct: 173 GKLDWADASKVSRRAKDRGAPQL 195
>gi|434394106|ref|YP_007129053.1| protein of unknown function UPF0027 [Gloeocapsa sp. PCC 7428]
gi|428265947|gb|AFZ31893.1| protein of unknown function UPF0027 [Gloeocapsa sp. PCC 7428]
Length = 486
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 189/299 (63%), Gaps = 19/299 (6%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RGF +Q+ T +GNHY EIQ+ + I++ A+K+GI QV VM H GSRGFGHQVA
Sbjct: 193 RGF-NQIGTLGSGNHYLEIQVAKKENIFEPELAAKLGITQPDQVVVMFHCGSRGFGHQVA 251
Query: 183 TDALVQMEKAMK-RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDM---------H 232
TD L K M+ + I+ DR+LACA +S + +A+ F+ L+M H
Sbjct: 252 TDYLQVFLKVMESKYGIKILDRELACAPFDSPEGQAY---FSAMKCGLNMSFANRQVILH 308
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
I + F++ F + +DL MH++YDV+HN AK E H+VDGK+++LLVHRKG+TRAF P
Sbjct: 309 RIREVFSEIFGRSAEDLGMHMVYDVAHNTAKLERHIVDGKERSLLVHRKGATRAFAPGMT 368
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
IP YQ GQPV+IGG+M T SY+L G G Q TF ST HG+GR +SR K+R+ +
Sbjct: 369 GIPEKYQDIGQPVIIGGSMETGSYLLVGVPSGDQ-TFFSTAHGSGRTMSRTKARKTFRGE 427
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ +++++GI +R S + EEA +YK+V +V++ GISK+ + P+ IKG
Sbjct: 428 KLQKEMQTRGIYVRSTSMSGLAEEAGGAYKDVDEVIEAAELAGISKRVVRFTPIGNIKG 486
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E K + +++ +++ +P GVGS G + ++ + + +E G W + GY W ED E
Sbjct: 112 YDEVKPYIKKVVDRLYERVPAGVGSTGFVKISRNEFRKVVEQGARWCVDNGYGWEEDLEL 171
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
EE G + AD +K+S +A RG Q+
Sbjct: 172 MEENGCIAGADAAKISEKAIDRGFNQI 198
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+++ +++ +P GVGS G + ++ + + +E G W + GY W ED E E
Sbjct: 120 KKVVDRLYERVPAGVGSTGFVKISRNEFRKVVEQGARWCVDNGYGWEEDLELME 173
>gi|124484957|ref|YP_001029573.1| hypothetical protein Mlab_0129 [Methanocorpusculum labreanum Z]
gi|124362498|gb|ABN06306.1| protein of unknown function UPF0027 [Methanocorpusculum labreanum
Z]
Length = 477
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 187/282 (66%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD++ D A G+ GQ+CVMIH GSRG GHQV TD L +E A K+
Sbjct: 199 SGNHFLEVQVVDDVVDNETAKTFGVAK-GQICVMIHCGSRGLGHQVCTDHLQVLESAAKK 257
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA ++S + +A+ + + + H++ + F K+F+ + ++
Sbjct: 258 YGIDLPDRQLACAPLSSPEGEAYFGAMAASANYAWANRQIITHIVRELFVKKFHVSYEE- 316
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HN+AK EEH VDG ++ + VHRKG+TRAF P +P +++ +GQPV+I G
Sbjct: 317 -MPLVYDVAHNVAKWEEHNVDGVRRNVCVHRKGATRAFGPGRAEVPHEFRASGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT+ M++TFGSTCHG+GR SR+ ++++ +EV L QGI +R +
Sbjct: 376 SMGTSSYILAGTDGAMEKTFGSTCHGSGRVKSRSSAKKSQTGEEVAKALLQQGIIVRAPN 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP+ YK+ ++VV T H GIS+ ++RP+ VIKG
Sbjct: 436 QAAIAEEAPDVYKSSSEVVQTVHDAGISRIVARMRPLGVIKG 477
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 464 DKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEE 523
D + L + +F+ +P GVGSK I ++ DL LE G ++ GY D CEE
Sbjct: 111 DISDMKELVEDLFNAVPTGVGSKSPIRLSQNDLSSMLEYGAKNAVEMGYGMEGDIPRCEE 170
Query: 524 YGRMLNADPSKVSMRAKKRGLPQ 546
G M A P VS +A++RG+PQ
Sbjct: 171 NGAMEGAKPEHVSKKARQRGIPQ 193
>gi|116754671|ref|YP_843789.1| hypothetical protein Mthe_1374 [Methanosaeta thermophila PT]
gi|116666122|gb|ABK15149.1| protein of unknown function UPF0027 [Methanosaeta thermophila PT]
Length = 473
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 179/282 (63%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E+YD+ A + G+ GQV VMIH GSRG GHQ+ TD L + KA+++
Sbjct: 197 SGNHFLEVQYVGEVYDERIARRFGLFK-GQVTVMIHCGSRGAGHQICTDHLEVLAKAVRK 255
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ D+QLACA I + + + A + + H + FAK F D+
Sbjct: 256 YNIDLPDKQLACAPIGTPEATNYFGAMAAAANYAWANRQIIAHWTREVFAKYFG----DV 311
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HN+AK EEHMVDG+ + L VHRKG+TR+F P +P DY+ GQP+LI G
Sbjct: 312 EMPLVYDVAHNVAKIEEHMVDGRLERLYVHRKGATRSFGPSRREVPQDYRDVGQPLLIPG 371
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G ++ ++ TFGS CHG+GR +SR+++++ EV L+ +GI +
Sbjct: 372 SMGTPSYVLCGQDRALELTFGSACHGSGRIMSRSQAKKTYRGSEVKASLQREGIKVMATE 431
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAPE YK +VV+ HA+G++KK K P+ V KG
Sbjct: 432 SAVLAEEAPEVYKPSHEVVEVVHALGLAKKVAKTIPLGVSKG 473
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++F IP GVG+ + ++ +L EA G W++ EGY D EHCEE G + A
Sbjct: 116 LIEALFKEIPSGVGATSRLHVSDSELTEAFIAGARWAVEEGYGTEGDLEHCEENGCLKGA 175
Query: 531 DPSKVSMRAKKRGLPQ 546
DPS+VS +A+KRG PQ
Sbjct: 176 DPSQVSTKARKRGRPQ 191
>gi|429197207|ref|ZP_19189120.1| hypothetical protein STRIP9103_00646 [Streptomyces ipomoeae 91-03]
gi|428667101|gb|EKX66211.1| hypothetical protein STRIP9103_00646 [Streptomyces ipomoeae 91-03]
Length = 477
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 194/324 (59%), Gaps = 14/324 (4%)
Query: 92 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAG--NHYAEIQIVDEI 149
Y E + + D A + +++V + + RG G QV + G NH+ E+Q VDE+
Sbjct: 164 YGEERDLRRCEDGGAVADADVDEVSR-----RARERGLG-QVGSLGSANHFLEVQRVDEV 217
Query: 150 YDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAR 209
YD+ A+ GI Q+CVMIH GSRG GHQ+ TD + M++AM R I DRQLAC
Sbjct: 218 YDEKTATAFGIA-ADQLCVMIHCGSRGLGHQICTDHVRAMDRAMSRYGITVPDRQLACTP 276
Query: 210 INSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 267
+ S + +A+ + + ++ DA + F + ++YDVSHN+AK E H
Sbjct: 277 VESPEGRAYLGAMAAAANYGRANRQLLSDAARRVFRRA-TGARLTLVYDVSHNLAKIETH 335
Query: 268 MVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQE 327
V G ++ L VHRKG+TRAFPP HP +P D + GQPVLI GTMGT SYVL G G +
Sbjct: 336 TVAGARRRLCVHRKGATRAFPPGHPDLPRDLREVGQPVLIPGTMGTASYVLAGVPGG--D 393
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDV 387
F STCHGAGR LSR ++ R + +E+ +LE++GI++R S + + EEAPE+YK+V +V
Sbjct: 394 AFFSTCHGAGRVLSRHRAARAVSGKELRARLETEGIAVRPRSLRALAEEAPEAYKDVAEV 453
Query: 388 VDTCHAVGISKKTFKLRPVAVIKG 411
V A G+ + +L P+ V+KG
Sbjct: 454 VAASEAAGLCRVVARLVPLGVVKG 477
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFD----HIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDK 518
D+ E ++ D IP G G G+ P LE L G +++ EGY D
Sbjct: 111 DRRELEPALPTIMDGLDRSIPRGAGPGGVWQPTGPGQLERILRGGSRYAVEEGYGEERDL 170
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
CE+ G + +AD +VS RA++RGL QV
Sbjct: 171 RRCEDGGAVADADVDEVSRRARERGLGQV 199
>gi|381191239|ref|ZP_09898750.1| hypothetical protein RLTM_09883 [Thermus sp. RL]
gi|380451028|gb|EIA38641.1| hypothetical protein RLTM_09883 [Thermus sp. RL]
Length = 958
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 180/288 (62%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG GHQV D + +
Sbjct: 677 QIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQDYVERF 735
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
KA R IE D+QLA A I S + + + + + L H + +AF K
Sbjct: 736 LKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEK-VG 794
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP +P +Y+ GQ
Sbjct: 795 FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQ 850
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTEK M +FGS+CHGAGR +SR ++++ + ++ +L +GI
Sbjct: 851 PVLVPGDMGRYSYVLAGTEKAMAVSFGSSCHGAGRKMSRHQAKKVARERNLVKELAERGI 910
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 911 LVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 958
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+
Sbjct: 601 LADTLYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPW 660
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P +VS RA +RG PQ+
Sbjct: 661 ANPDRVSERAFERGAPQI 678
>gi|330508018|ref|YP_004384446.1| hypothetical protein MCON_2082 [Methanosaeta concilii GP6]
gi|328928826|gb|AEB68628.1| Uncharacterized protein family (UPF0027) [Methanosaeta concilii
GP6]
Length = 474
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 175/282 (62%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ V+EIY+ A + G+ GQ+ VMIH GSRG GHQ+ TD L + KA+++
Sbjct: 198 SGNHFLEIQRVEEIYNPEIAKRFGLFK-GQITVMIHCGSRGAGHQICTDHLDVLSKAVRK 256
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
NI+ D+QLACA + + + + A + + H + F + F +
Sbjct: 257 YNIDIPDKQLACAPLGTPEADHYFGAMVCAANYAWANRHIIAHWTREVFDRYFPGS---- 312
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HN+AK EEH V+GK++ L VHRKG+TRAF P IP Y+ GQPVLI G
Sbjct: 313 QLQLLYDVAHNVAKIEEHRVEGKKERLYVHRKGATRAFGPSRTEIPAAYEGLGQPVLIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G +K + TFGS CHG+GR +SR+++ R +EV L GI++R S
Sbjct: 373 SMGTASYVLCGQDKALDLTFGSACHGSGRVMSRSQALRQFTGKEVKAALNRDGIAVRSTS 432
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P ++ EEAP+ YK DVVD H +GI+ + +L P+ V KG
Sbjct: 433 PGMLAEEAPQVYKPSGDVVDVVHNLGIATRVARLVPLGVSKG 474
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F +P G+GS G + R L E+ G +W++ EGY D + CEE G M A
Sbjct: 117 LLDALFQAVPSGLGSTGRLHATDRQLTESFLRGAEWAVEEGYGVESDLDFCEENGSMPGA 176
Query: 531 DPSKVSMRAKKRGLPQV 547
DPS+V ++A+KRG PQ+
Sbjct: 177 DPSQVGVKARKRGRPQL 193
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 15/60 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G FV+ LR PG V Q+ANVA LPGIVG S+ +PD H
Sbjct: 21 MRVPGRIFVS--------AALREMVEPGTV-------DQVANVATLPGIVGHSMAMPDAH 65
>gi|389579482|ref|ZP_10169509.1| hypothetical protein DespoDRAFT_01391 [Desulfobacter postgatei
2ac9]
gi|389401117|gb|EIM63339.1| hypothetical protein DespoDRAFT_01391 [Desulfobacter postgatei
2ac9]
Length = 483
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/442 (35%), Positives = 240/442 (54%), Gaps = 72/442 (16%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHS--------VPSTQWLSDNTMR-------------- 74
++Q+ N A LPGIV ++ +PD+H V +TQ L D +
Sbjct: 47 LEQLVNTATLPGIVKYALAMPDMHQGYGFPIGGVVATQ-LPDGIISPGGVGYDINCGVRL 105
Query: 75 -----------------SSNIWKRSPLTLGAGNHY----AEIQIVDEIYDKWA-----AS 108
+S ++ P LG G H E+ ++ KWA A+
Sbjct: 106 LATQLEKEEAAPYLEDLASALYANCPSGLGKGGHIKLKPGELDLLVVKGAKWALKRGYAT 165
Query: 109 KMGIE-----------DVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAA 155
+ +E D G+V + +RG QV T +GNH+ EI +VD I+D+ A
Sbjct: 166 ESDLERTEEGGCLEGADPGKVS--DRAKNRG-QDQVGTLGSGNHFIEIDMVDRIFDEPVA 222
Query: 156 SKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN 215
++MGI QV V IHSGSRGFGHQV +D + +++K +++ DR+L CA ++S +
Sbjct: 223 TRMGIFH-NQVTVQIHSGSRGFGHQVCSDYVKRLQKTIQQYGFSLPDRELVCAPLSSPEG 281
Query: 216 KAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 269
+ + N + L + I +F + + ++ +YD++HN+A+ EEH V
Sbjct: 282 QDYLAAMNAAANYAFVNRQLLTYHIRRSFEQVLAGKVKNHHVYQVYDIAHNMARIEEHEV 341
Query: 270 DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETF 329
DG++ + VHRKG+TRAF P L+P Y+ GQPVL+ G+MGT S+VL GTE M +TF
Sbjct: 342 DGRRIKVCVHRKGATRAFGPGSSLLPGIYRDIGQPVLVPGSMGTASWVLVGTEGSMTQTF 401
Query: 330 GSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVD 389
GS CHGAGR +SR+K+++ + ++ +LE+ GI +RV+S + EEAP +YK+V V++
Sbjct: 402 GSICHGAGRVISRSKAKKAVRGAKLREELEACGIHVRVSSMSGLAEEAPSAYKDVDRVIE 461
Query: 390 TCHAVGISKKTFKLRPVAVIKG 411
H GI+KK +L P+AVIKG
Sbjct: 462 VVHGAGIAKKVARLIPLAVIKG 483
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHI--PVGVG 431
+++A + +++ +V+T GI K + + G + +A + D I P GVG
Sbjct: 37 LQKAIQGDRSLEQLVNTATLPGIVKYALAMPDMHQGYGFPIGGVVATQLPDGIISPGGVG 96
Query: 432 SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPM 491
I R L LE E + E LA +++ + P G+G G I +
Sbjct: 97 YD--INCGVRLLATQLEK------------EEAAPYLEDLASALYANCPSGLGKGGHIKL 142
Query: 492 NARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+L+ + G W+L+ GY D E EE G + ADP KVS RAK RG QV
Sbjct: 143 KPGELDLLVVKGAKWALKRGYATESDLERTEEGGCLEGADPGKVSDRAKNRGQDQV 198
>gi|384431964|ref|YP_005641324.1| hypothetical protein [Thermus thermophilus SG0.5JP17-16]
gi|333967432|gb|AEG34197.1| protein of unknown function UPF0027 [Thermus thermophilus
SG0.5JP17-16]
Length = 958
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 180/288 (62%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG GHQV D + +
Sbjct: 677 QIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQDYVERF 735
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
KA R IE D+QLA A I S + + + + + L H + +AF K
Sbjct: 736 LKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEK-VG 794
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP +P +Y+ GQ
Sbjct: 795 FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQ 850
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTEK M +FGS+CHGAGR +SR ++++ + ++ +L +GI
Sbjct: 851 PVLVPGDMGRYSYVLAGTEKAMAVSFGSSCHGAGRKMSRHQAKKVARERNLVKELAERGI 910
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 911 LVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 958
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+
Sbjct: 601 LADTLYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPW 660
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P +VS RA +RG PQ+
Sbjct: 661 ANPDRVSERAFERGAPQI 678
>gi|242279961|ref|YP_002992090.1| hypothetical protein Desal_2495 [Desulfovibrio salexigens DSM 2638]
gi|242122855|gb|ACS80551.1| protein of unknown function UPF0027 [Desulfovibrio salexigens DSM
2638]
Length = 475
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 236/471 (50%), Gaps = 77/471 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ +FF N K ++ EL ++ V Q+ +VA+LPG+VG+ +PD H
Sbjct: 22 MRVDALFFGN----KDIILELDDTT-----------VSQVRDVASLPGVVGQVCAMPDAH 66
Query: 61 S--------------------------------------VPSTQWLSDNTMRSSNIWKRS 82
S + ++ + + ++KR
Sbjct: 67 SGYGFPIGGVGAFDEKHGVISAGGVGFDISCGVRTLTTGLKKQDLITCDAKLADLLFKRI 126
Query: 83 PLTLGAGNHYA-EIQIVDEIY---DKWAASKMGI---EDVGQV-----------CVMIHS 124
P G G E +DE+ WA + G+ ED+G++ C +
Sbjct: 127 PSGAGVGGDIILEGDQLDEMLLGGASWAVGQ-GVGKPEDLGRIEGNGRNNFADPCKVPLK 185
Query: 125 GSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
+ +Q+ + +GNHY E+Q V+EIYDK A+ GI + V V IH GSRG GHQ+A
Sbjct: 186 AKQRMRNQMGSLGSGNHYLEVQYVEEIYDKAKAAAFGI-GIDDVVVSIHCGSRGLGHQIA 244
Query: 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAK 240
D L M KA I+ + +ACA INS + + + + I +
Sbjct: 245 KDYLPMMAKAAPGFGIKLPHKDIACAPINSELGRDYLGAMGAGINCALANRQAITHLVRE 304
Query: 241 QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
F T D+ ++YDVSHN EE ++GK+K L VHRKG+TRA P HP +P +++
Sbjct: 305 CFTDTLPQADLRLLYDVSHNTCHREEFKINGKKKNLWVHRKGATRALGPGHPELPREFKK 364
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPV+IGG+MGT SY+L+GT+ + +F S CHGAGR +SRAK+R+N ++ +L
Sbjct: 365 HGQPVIIGGSMGTASYILSGTKDSAEISFSSCCHGAGRVMSRAKARKNFKGNKIQKELGR 424
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI IR S K + EEAP +YK+V ++++ GI++K +LRP+ IKG
Sbjct: 425 HGIIIRTGSFKGIAEEAPLAYKDVDMIIESTQTAGIAEKVARLRPILCIKG 475
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
+LA +F IP G G G I + L+E L G W++ +G ED E GR
Sbjct: 117 KLADLLFKRIPSGAGVGGDIILEGDQLDEMLLGGASWAVGQGVGKPEDLGRIEGNGRNNF 176
Query: 530 ADPSKVSMRAKKR 542
ADP KV ++AK+R
Sbjct: 177 ADPCKVPLKAKQR 189
>gi|292492963|ref|YP_003528402.1| hypothetical protein Nhal_2955 [Nitrosococcus halophilus Nc4]
gi|291581558|gb|ADE16015.1| protein of unknown function UPF0027 [Nitrosococcus halophilus Nc4]
Length = 486
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/285 (44%), Positives = 178/285 (62%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
+GNHY EIQ++ + IYD A G++ QV +M H GSRGFGHQVATD L + K M
Sbjct: 203 SGNHYLEIQVIHPENIYDPALARFFGLDLPEQVVIMFHCGSRGFGHQVATDYLQRFLKVM 262
Query: 194 -KRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP 246
+ +E DR+LACA +S + + + A + + +H + + F++ +
Sbjct: 263 TSKYGLEVRDRELACAPFHSPEGQDYFAAMKCALNMSFANRQVILHRVREVFSEVLGRSA 322
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+DL MH+IYDV+HN AK E H V+GKQ+TLLVHRKG+TRAF P P +P Y+ GQPV+
Sbjct: 323 EDLGMHMIYDVAHNTAKLEPHQVNGKQRTLLVHRKGATRAFGPGRPELPELYRQVGQPVI 382
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
IGG+M T SY+L GT G Q TF ST HG+GR +SR K+R+ + +L++LE +GI IR
Sbjct: 383 IGGSMETGSYLLIGTPDGAQ-TFFSTAHGSGRTMSRRKARKQWQGEALLSQLEERGIYIR 441
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + V EEA +YK++ +VV G+SK + P+ IKG
Sbjct: 442 SVSKRGVAEEAGGAYKDIDEVVTATDLAGLSKPVVRFIPIGNIKG 486
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E K H + L +F IP GVGS G++ ++ + + + G W +++G W ED E
Sbjct: 112 YKEVKPHLKTLVDRLFKQIPAGVGSSGLLKVSRSEFRQVCQQGARWCVQQGLGWEEDLER 171
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
EE G + ADP+K+S RA RGL Q+
Sbjct: 172 TEEGGLIGGADPAKISERAIDRGLNQL 198
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +F IP GVGS G++ ++ + + + G W +++G W ED E E
Sbjct: 122 LVDRLFKQIPAGVGSSGLLKVSRSEFRQVCQQGARWCVQQGLGWEEDLERTE 173
>gi|404491553|ref|YP_006715659.1| hypothetical protein Pcar_0019 [Pelobacter carbinolicus DSM 2380]
gi|77543720|gb|ABA87282.1| protein of unknown function UPF0027 [Pelobacter carbinolicus DSM
2380]
Length = 480
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 174/282 (61%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+V+EI + A +G+ GQV V IH+GSRG G+QV D L M +A +
Sbjct: 200 SGNHFLEVQMVEEIREPQLAQVLGLFP-GQVTVTIHTGSRGLGYQVCDDYLRIMLRAAAK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQL CA +NS + + A F L + ++F + + + L
Sbjct: 259 YGIKLADRQLCCAPLNSPAGRQYLAAMACAANFAFANRQLITAWVRESFEQVLGQSAEAL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ VIYDV HNIAK E+H+VDG ++ L VHRKG+TRAFPP HP +P Y+ GQPVLI G
Sbjct: 319 RLSVIYDVCHNIAKYEQHVVDGVRRRLCVHRKGATRAFPPGHPDVPECYRGIGQPVLIPG 378
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYVL GTE G ETFGSTCHGAGR LSR +++ + + +L ++GI +R A
Sbjct: 379 DMGRYSYVLVGTEAGFGETFGSTCHGAGRVLSRHAAKKVARGRRIEEELAARGIVLRAAG 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EE E+YK+V +VV+ GI + +LRP+AV+KG
Sbjct: 439 RGTVAEEISEAYKDVMEVVEVVQKAGIGRIVARLRPLAVVKG 480
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 465 KEHFERLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEE 523
+ H ++LA ++F ++P G+GS + + + + L+ G W +++G D H EE
Sbjct: 112 RPHLQKLADALFRNVPSGIGSHRRDLKLTVAQERKVLQQGARWVVKQGMGSERDLRHIEE 171
Query: 524 YGRMLNADPSKVSMRAKKRGLPQV 547
G + ADP +S RA +RGL Q+
Sbjct: 172 GGCIEGADPDLLSDRALERGLDQL 195
>gi|407276691|ref|ZP_11105161.1| hypothetical protein RhP14_09307 [Rhodococcus sp. P14]
Length = 473
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 176/293 (60%), Gaps = 17/293 (5%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q V++++D A MG+ DVG VCVMIH GSRG GHQ+ TD
Sbjct: 190 RGLG-QLGSLGSGNHFLEVQAVEQVFDPAVARPMGL-DVGTVCVMIHCGSRGLGHQICTD 247
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAF 238
+ +MEKAM R I DRQLAC + S + +A+ A + L F
Sbjct: 248 HVREMEKAMGRYEIHVPDRQLACVPVRSPEGEAYLGAMVAAANYGRANRQLLTEATRRVF 307
Query: 239 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
TT D ++YDVSHN+AK E H VDG+ +TL VHRKG+TR+ PP HP +P D
Sbjct: 308 EDTAGTTLD-----LLYDVSHNLAKIERHEVDGQVRTLCVHRKGATRSLPPRHPDVPEDL 362
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL 358
GQPVLI GTMGT SYVL G F ST HGAGR SR ++ R+ D + V + L
Sbjct: 363 ADVGQPVLIPGTMGTASYVLAGVAG--NPAFFSTAHGAGRVQSRHRAARHTDGRAVRDAL 420
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
ES G+ +R +S + + EE P++YK++ V + G++++ +L P+ V+KG
Sbjct: 421 ESHGVLVRGSSWRGLAEEKPQAYKDIDAVTEVSERAGLARRVARLVPLGVVKG 473
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 479 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 537
+P G+ ++G+ + R L LE G +++ +G+ D E CE+ G + AD + VS
Sbjct: 126 VPRGMQTRGVWELPNRSVLHRVLEGGARFAVDQGHGVVRDLERCEDRGVLAGADSAAVSD 185
Query: 538 RAKKRGLPQV 547
RA +RGL Q+
Sbjct: 186 RAVERGLGQL 195
>gi|55981754|ref|YP_145051.1| hypothetical protein TTHA1785 [Thermus thermophilus HB8]
gi|55773167|dbj|BAD71608.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 476
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 180/288 (62%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG GHQV D + +
Sbjct: 195 QIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQDYVERF 253
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
K R IE D+QLA A I S + + + + + L H + +AF K
Sbjct: 254 LKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEK-VG 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP +P +Y+ GQ
Sbjct: 313 FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQ 368
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTEK M+ +FGS+CHGAGR +SR ++++ + ++ +L +GI
Sbjct: 369 PVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHGAGRKMSRHQAKKVARERNLVKELAERGI 428
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 429 LVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 476
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+
Sbjct: 119 LADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPW 178
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG PQ+
Sbjct: 179 ANPDKVSERAFERGAPQI 196
>gi|258404471|ref|YP_003197213.1| hypothetical protein Dret_0333 [Desulfohalobium retbaense DSM 5692]
gi|257796698|gb|ACV67635.1| protein of unknown function UPF0027 [Desulfohalobium retbaense DSM
5692]
Length = 476
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 182/288 (63%), Gaps = 13/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
QV T +GNHY E+Q VD IYD+ AA G+++ G V V +H GSR GHQ+ TD + +
Sbjct: 194 QVGTLGSGNHYLEVQYVDAIYDQAAAFAFGLKE-GGVVVSLHCGSRALGHQIGTDYIQIL 252
Query: 190 EKAMKRDNIETNDRQLACARINSNKNK----AFAKQFNTTPDDLDM--HVIYDAFAKQFN 243
+A ++ ++ R L CA I+S + + A A N + + H++ AFA+ F
Sbjct: 253 GRAAQKRSLHLPSRDLVCAPIDSKEGRDYYQAMACGVNCALANRQVLGHLVRQAFAEMFP 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
+ ++YDVSHN K E+H VDG +K+L VHRKG+TR+F P +P Y+ GQ
Sbjct: 313 LA----RLELLYDVSHNTCKVEDHDVDGLRKSLYVHRKGATRSFGPGRQELPAAYRGVGQ 368
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVLIGGTMGT SY+L GT + +GS CHGAGRA+SR ++ + + VL++LE +GI
Sbjct: 369 PVLIGGTMGTASYILAGTVESEAMAWGSACHGAGRAMSRKQATKRWKGKSVLHELEHRGI 428
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R AS + V EEAP +YK+V +VV++ H G+++K +LRP+A IKG
Sbjct: 429 LVRAASQRGVAEEAPGAYKDVDEVVESTHHAGLARKVGRLRPLACIKG 476
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 479 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 538
IP GVG G + ++ +L++ L +G W++ +GY + D E+ E+ G + A+P VS
Sbjct: 127 IPAGVGRGGQLRLSGSELDDVLRLGARWAVAQGYGESRDLEYIEDGGCLSGANPEVVSET 186
Query: 539 AKKRGLPQV 547
AKKR QV
Sbjct: 187 AKKRQQDQV 195
>gi|123417448|ref|XP_001305113.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121886612|gb|EAX92183.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 518
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 186/294 (63%), Gaps = 14/294 (4%)
Query: 126 SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
+RG G Q+ T AGNHY E+Q VD+I D+ A M + + GQV VMIH+GSRG GHQVA
Sbjct: 231 ARGTG-QLGTVGAGNHYIEVQRVDKILDEEKARVMDLHE-GQVVVMIHTGSRGLGHQVAD 288
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA 237
+ + + ++++ D+QLA +S + + + A F + MH + A
Sbjct: 289 ENMKVCSEKFVKESLP--DKQLAAPSFHSEEGQKYLRAMYAAANFVWCNRQVIMHNVRRA 346
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
F+ F L+ H++YDV+HNIAK E+H +DG +K +VHRKG+TRAF P I
Sbjct: 347 FSDVFKDR--KLETHLVYDVAHNIAKVEKHNIDGVEKEYIVHRKGATRAFGPGRQEISEK 404
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
Y+ GQP+LIGG+MGT SYVL GT++ M+ FGSTCHGAGR +SR+K+ + + ++V N
Sbjct: 405 YRSIGQPILIGGSMGTASYVLVGTDESMKCAFGSTCHGAGRLMSRSKALKTIPLEKVQND 464
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L S G+ ++ A + + +E+P++YK++ V+D C VGIS K +L P+ VIKG
Sbjct: 465 LASHGVFLKAADKQTIQDESPDAYKDIEQVIDACETVGISHKVARLVPMGVIKG 518
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSK--GIIPMNARDLEEALEMGMDWSLREGYIWAEDK 518
W E + + L + ++ +IPVGVG K GI P R L + + G W+L G+ ED
Sbjct: 151 WEEVEPVKKELVEKLYKYIPVGVGGKLDGICP--CRHLRDVMLKGAGWALENGFAVQEDI 208
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
++CEE G + ADPS +S R RG Q+
Sbjct: 209 DNCEENGCLKGADPSLISDRTIARGTGQL 237
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G F+ + K +EL N G LP + QI+ VA LPGI S G+PD+H
Sbjct: 50 MKVPGYFYSTPEMAKYAFDELENWMSNRNQG--LPSILQISFVATLPGITKGSFGMPDMH 107
Query: 61 S 61
S
Sbjct: 108 S 108
>gi|46199728|ref|YP_005395.1| rtcB protein [Thermus thermophilus HB27]
gi|46197354|gb|AAS81768.1| rtcB protein [Thermus thermophilus HB27]
Length = 476
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 179/288 (62%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG GHQV D + +
Sbjct: 195 QIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQDYVERF 253
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
KA R IE D+QLA A I S + + + + + L H + +AF K
Sbjct: 254 LKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEK-VG 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP D + V+YD++HN AK EEH + +LVHRKG+TRAF P HP +P Y+ GQ
Sbjct: 313 FTPRDHGLRVLYDLAHNNAKLEEH----GGRRVLVHRKGATRAFGPGHPEVPEAYRRVGQ 368
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTEK M+ +FGS+CHGAGR +SR ++++ + ++ +L +GI
Sbjct: 369 PVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHGAGRKMSRHQAKKVARERNLVKELAERGI 428
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 429 LVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 476
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+
Sbjct: 119 LADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESEGRLPW 178
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG PQ+
Sbjct: 179 ANPDKVSERAFERGAPQI 196
>gi|406938891|gb|EKD72024.1| hypothetical protein ACD_46C00030G0008 [uncultured bacterium]
Length = 473
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 225/434 (51%), Gaps = 61/434 (14%)
Query: 38 KQIANVAALPGIVGRSVGLPDVH-----------------------------------SV 62
+QI NVA+LPG+VG ++ +PD H S+
Sbjct: 41 EQIINVASLPGLVGSAMTMPDAHWGYGFPIGGVAAFDPNHGGIISAGGVGFDISCGIRSL 100
Query: 63 PSTQWLSDNTMRSSNI----WKRSPLTLGA-GNHYAEIQIVDEIY---DKWAASK----- 109
+ +LSD N+ + P +G G + ++E+ KWA +K
Sbjct: 101 RTNLFLSDILPHIENLAETLFDIIPAGVGVEGELRLTVHELEEVMYGGAKWAVNKGYGVK 160
Query: 110 ---MGIEDVGQV------CVMIHSGSRGFGHQ-VATAGNHYAEIQIVDEIYDKWAASKMG 159
IE+ G + V H+ R G +GNHY E+Q+V +IYD+ AA G
Sbjct: 161 EDLEYIEEKGCIDGAEPKYVSDHAKERQLGEMGTLGSGNHYLEVQVVKQIYDQQAADAYG 220
Query: 160 IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFA 219
+ + Q+ + IH GSRG GHQ+ +D LV + KA KR N+ DR+LACA I S + + +
Sbjct: 221 L-SLDQILISIHCGSRGLGHQIGSDYLVTLAKAAKRLNVHLPDRELACAPILSEEGQQYI 279
Query: 220 KQFNTTPDDL--DMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 277
++ + + +I + + F+ + + ++DVSHN K E+H VDG+ K +
Sbjct: 280 GAMHSGINCALANRQMITELTRRAFHQVIPNAYLETLFDVSHNTCKREKHNVDGRLKEIY 339
Query: 278 VHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAG 337
+HRKG+TRAF P HP +P Y GQPV IGG+MGT SY+L G + F S CHGAG
Sbjct: 340 IHRKGATRAFGPEHPSLPKKYLSIGQPVCIGGSMGTGSYILAGNSAKLNHAFASACHGAG 399
Query: 338 RALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGIS 397
R +SR ++ + +++++L QGI IR S + V EEAP+SYK+V VV+ G++
Sbjct: 400 RRMSRHQALKKWRGHQLVDELAQQGIYIRSHSMRGVAEEAPDSYKDVHQVVEATELAGLA 459
Query: 398 KKTFKLRPVAVIKG 411
++ L+P+A +KG
Sbjct: 460 RRVAFLKPLACVKG 473
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
SLR ++ H E LA+++FD IP GVG +G + + +LEE + G W++ +GY
Sbjct: 99 SLRTNLFLSDILPHIENLAETLFDIIPAGVGVEGELRLTVHELEEVMYGGAKWAVNKGYG 158
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED E+ EE G + A+P VS AK+R L ++
Sbjct: 159 VKEDLEYIEEKGCIDGAEPKYVSDHAKERQLGEM 192
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E LA+++FD IP GVG +G + + +LEE + G W++ +GY ED E+ E +
Sbjct: 114 ENLAETLFDIIPAGVGVEGELRLTVHELEEVMYGGAKWAVNKGYGVKEDLEYIEE--KGC 171
Query: 476 FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE--------DKEHCEEYGRM 527
D G P D + ++G +L G + E D++ + YG
Sbjct: 172 ID---------GAEPKYVSDHAKERQLGEMGTLGSGNHYLEVQVVKQIYDQQAADAYG-- 220
Query: 528 LNADPSKVSMRAKKRGL 544
L+ D +S+ RGL
Sbjct: 221 LSLDQILISIHCGSRGL 237
>gi|386001290|ref|YP_005919589.1| hypothetical protein Mhar_0588 [Methanosaeta harundinacea 6Ac]
gi|357209346|gb|AET63966.1| hypothetical protein Mhar_0588 [Methanosaeta harundinacea 6Ac]
Length = 473
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 171/278 (61%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ VDEI+D A + G+ GQ+ VMIH GSRG GHQ+ TD L + +A+K+
Sbjct: 197 SGNHFLEIQRVDEIFDDDLAKRFGLFR-GQITVMIHCGSRGAGHQICTDHLQVLSRAVKK 255
Query: 196 DNIETNDRQLACARINS-NKNKAFAKQFNTTPDDLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
IE D+QLACA + + F I A+ ++ F D + +
Sbjct: 256 YGIELPDKQLACAPLGTPEAENYFGAMAAAANYAWANRQIISAWTREVFERYFPDARLDL 315
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDV+HN+AK EEH VDG ++ L VHRKG+TRAF P P IP+ Y+ GQPV+I G+MGT
Sbjct: 316 VYDVAHNVAKVEEHEVDGSRERLYVHRKGATRAFGPGRPEIPMAYREAGQPVIIPGSMGT 375
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL G+ M+ TFGS CHGAGR +SR ++++ EV + L +GI + PK++
Sbjct: 376 PSYVLCGSAGAMRLTFGSACHGAGRIMSRTQAKKTYAGAEVKDVLTRRGIKVMATHPKML 435
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAPE YK +VVD H + I++K K+ P+ V KG
Sbjct: 436 AEEAPEVYKPSFEVVDVVHHLDIARKVAKVVPLGVSKG 473
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L + +F +P GVG+KG + ++ +L+EA G W++ G+ ED EHCEE GRM A
Sbjct: 116 LVEDLFHDVPSGVGAKGRLRVSEHELDEAFTRGAAWAVEAGFGVPEDLEHCEEGGRMEGA 175
Query: 531 DPSKVSMRAKKRGLPQV 547
P +VS++A+KRG PQ+
Sbjct: 176 KPDQVSLKARKRGRPQL 192
>gi|218296003|ref|ZP_03496783.1| protein of unknown function UPF0027 [Thermus aquaticus Y51MC23]
gi|218243741|gb|EED10269.1| protein of unknown function UPF0027 [Thermus aquaticus Y51MC23]
Length = 476
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 181/288 (62%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDE+YD+ AA G+ GQ+ V+IH+GSRG GHQV D + +
Sbjct: 195 QIGTLGSGNHFLEVQYVDEVYDEEAAEAFGLFP-GQITVLIHTGSRGLGHQVCQDYVERF 253
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
K R IE D+QLA A I S + + + + + L H + +AF ++
Sbjct: 254 LKVAPRYGIELLDKQLAAAPIRSPEGEDYLQAMAAAANFAFANRQLIAHFVREAF-ERVG 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
P D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP IP++Y+ GQ
Sbjct: 313 FAPKDHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEIPLEYRKVGQ 368
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GT++ M+ +FGS+CHGAGR +SR +++R + ++ +L +GI
Sbjct: 369 PVLVPGDMGRYSYVLAGTQRAMEVSFGSSCHGAGRKMSRHQAKRVARERNLVKELAERGI 428
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI +K +LRP+ V+KG
Sbjct: 429 LVRAATRATVDEEMPEAYKDVSLVVEAVQGAGIGRKVARLRPLIVVKG 476
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W +R G+ + ED E GR+
Sbjct: 119 LADTLYRLVPSGVGSERKDVRFSKRELKEILKEGAGWLIRRGFGYPEDLRFIESEGRLPW 178
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG+PQ+
Sbjct: 179 ANPEKVSDRAFERGVPQI 196
>gi|433635712|ref|YP_007269339.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|432167305|emb|CCK64816.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
Length = 432
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ EIQ VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEIQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIESHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTTGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|383764823|ref|YP_005443805.1| hypothetical protein CLDAP_38680 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381385091|dbj|BAM01908.1| hypothetical protein CLDAP_38680 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 484
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 178/284 (62%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+++V++I+ AA MG+++ G + V IH GSRG GHQV TD + + A+ +
Sbjct: 202 AGNHFIEVEVVEQIFHPEAARAMGLQE-GCLAVQIHCGSRGLGHQVCTDYVQSFQHAVHK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQF--NTTPD 247
I DR+L CA ++S + KA+ + L H AF + F
Sbjct: 261 YGIHLPDRELVCAPMDSPEGKAYMAAMRAAANFAFANRQLLAHSARRAFEETFAGRFNKK 320
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ + +YD++HN+ K E H +G++ + VHRKG+TRAF P P +P +YQ GQPVL+
Sbjct: 321 EWRLRQVYDIAHNMGKLETHEREGRRLRVCVHRKGATRAFGPGSPELPAEYQDIGQPVLV 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S+VL GTE M+ ++GSTCHGAGR LSRAK+++ + + + +LE+ G+ +R
Sbjct: 381 PGSMGTASWVLVGTETSMERSWGSTCHGAGRVLSRAKAKKQVRGERLREELEAHGVKVRA 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP++YK+V VV+T GI++K +LRPVAVIKG
Sbjct: 441 GSMSGLAEEAPQAYKDVDMVVETVTHAGIARKVARLRPVAVIKG 484
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
+ + LA + + P GVGS+G++ + +L + L G W+L+ GY ED E EE GR
Sbjct: 117 YLDTLATLLNTYCPSGVGSEGVVRVQVEELNKILREGARWALKHGYATEEDLERTEEGGR 176
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ +ADP++VS RAK+RG Q+
Sbjct: 177 LEDADPAQVSERAKQRGREQI 197
>gi|359415892|ref|ZP_09208277.1| hypothetical protein HRED_01836 [Candidatus Haloredivivus sp. G17]
gi|358033742|gb|EHK02262.1| hypothetical protein HRED_01836 [Candidatus Haloredivivus sp. G17]
Length = 471
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 178/278 (64%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDE++ K A G+E+ QV VMIHSGSRG GHQ +D + EKA
Sbjct: 195 SGNHFLEVQVVDEVFSKEKAEAFGLEE-DQVLVMIHSGSRGLGHQTCSDYVRDFEKAYPD 253
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAFAKQFNTTPDDLDMHV 253
E ++ L A I+S + + + + + + I +A + T D ++ +
Sbjct: 254 IAEEIPEKNLIYAPIDSREAQDYKEAMYAAANFAWCNRQAITEAVRESLETLFDGPEVGL 313
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDV HNIAK E H ++ ++K ++VHRKG+TRAFPP H +P Y+ +GQPVLI GTMGT
Sbjct: 314 VYDVCHNIAKEETHEMNDEEKDVIVHRKGATRAFPPGHEKVPEAYRESGQPVLIPGTMGT 373
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L+G EK M +FGST HGAGR SR++S+++ +++ N L+ +GI ++ AS +
Sbjct: 374 SSYILSGGEKSMSLSFGSTAHGAGRLKSRSQSKQDYWGEDIQNDLKREGIHVKAASGSTI 433
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP SYK+V +V++ ++GI KK K+RP+ IKG
Sbjct: 434 AEEAPGSYKDVDEVIEVSDSLGIGKKVVKMRPIVNIKG 471
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LA ++ +P G+G G I ++ +DLEE LE GMDW L G+ ED EHCEE GR L
Sbjct: 113 EQLANILYSKVPCGLGKGGYIDIDEQDLEEILEKGMDWMLENGHAEKEDLEHCEENGR-L 171
Query: 529 NADPSKVSMRAKKRGLPQV 547
+P KV +AK RGL Q+
Sbjct: 172 PGNPEKVPEKAKTRGLKQL 190
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFER 470
+ E+LA ++ +P G+G G I ++ +DLEE LE GMDW L G+ ED EH E
Sbjct: 111 MEEQLANILYSKVPCGLGKGGYIDIDEQDLEEILEKGMDWMLENGHAEKEDLEHCEE 167
>gi|145594927|ref|YP_001159224.1| hypothetical protein Strop_2399 [Salinispora tropica CNB-440]
gi|145304264|gb|ABP54846.1| protein of unknown function UPF0027 [Salinispora tropica CNB-440]
Length = 472
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 173/282 (61%), Gaps = 14/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E+YD+ A G+ GQVCVMIH GSRG GHQ+ D + +ME+AM R
Sbjct: 199 SGNHFLEVQAVTEVYDQRVAEVFGLRP-GQVCVMIHCGSRGLGHQICADYVRRMERAMPR 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+I+ DRQLACA ++S + +A+ A + L HV F + T L
Sbjct: 258 YDIQVPDRQLACAPVSSPEGQAYLGAMAAAANYARANRQLLTHVARLVFRR---VTGAGL 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D V+YDVSHN AK E H VDG++++L VHRKG+TRA PP HP +P + GQPVLI G
Sbjct: 315 D--VVYDVSHNQAKIETHGVDGERRSLCVHRKGATRALPPGHPDLPAELGEVGQPVLIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVLTG F STCHGAGR SR ++ R Q+ +L +Q I++R AS
Sbjct: 373 SMGTASYVLTGVSGA--PAFASTCHGAGRVRSRKQAVRAERGQDPREQLVAQNIAVRGAS 430
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EE P +YK++ VV+ G+ +K +L P+ V+KG
Sbjct: 431 RRGLAEEMPTAYKDIDAVVEATEGAGLCRKVARLVPIGVVKG 472
>gi|385995553|ref|YP_005913851.1| hypothetical protein [Mycobacterium tuberculosis CCDC5079]
gi|339295507|gb|AEJ47618.1| hypothetical protein CCDC5079_2428 [Mycobacterium tuberculosis
CCDC5079]
Length = 373
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 90 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 147
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 148 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 207
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 208 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 265
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 266 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 323
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 324 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 373
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 7 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 66
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 67 ERCEDGGVMTGADAAKISDRALQRGLGQI 95
>gi|340627652|ref|YP_004746104.1| hypothetical protein MCAN_26771 [Mycobacterium canettii CIPT
140010059]
gi|340005842|emb|CCC45008.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
Length = 432
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIESHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|386005522|ref|YP_005923801.1| hypothetical protein MRGA423_16440 [Mycobacterium tuberculosis
RGTB423]
gi|380726010|gb|AFE13805.1| hypothetical protein MRGA423_16440 [Mycobacterium tuberculosis
RGTB423]
Length = 400
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 117 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 174
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 175 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 234
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 235 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 292
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 293 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 350
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 351 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 400
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 34 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 93
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 94 ERCEDGGVMTGADAAKISDRALQRGLGQI 122
>gi|317122891|ref|YP_004102894.1| hypothetical protein [Thermaerobacter marianensis DSM 12885]
gi|315592871|gb|ADU52167.1| protein of unknown function UPF0027 [Thermaerobacter marianensis
DSM 12885]
Length = 478
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 178/290 (61%), Gaps = 15/290 (5%)
Query: 130 GHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV 187
G Q+ T +GNH+ E+Q V+ +YD AA G+ GQV V+IH+GSRG GHQV D++
Sbjct: 196 GSQLGTLGSGNHFLEVQYVEHVYDPEAAEVFGLFP-GQVTVLIHTGSRGLGHQVCQDSVD 254
Query: 188 QMEKAMKRDNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIY----DAFAKQ 241
+M A +R IE DRQLA A I S + +A+ A + VI +AFA+
Sbjct: 255 RMLAAARRHGIELPDRQLAAAPIESPEGQAYLGAMAAAANFAFANRQVITAYAREAFARV 314
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
F P + V+YD++HN AK EEH + +LVHRKG+TRAF P HP +P Y+
Sbjct: 315 FG--PGSSRLRVLYDLAHNNAKWEEH----GGRRVLVHRKGATRAFGPGHPDVPAPYRAV 368
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVL+ G MG SYVL GT M ETFGS+CHGAGR LSR+++++ + + L+ Q
Sbjct: 369 GQPVLVPGDMGRYSYVLAGTAGAMAETFGSSCHGAGRRLSRSQAKKVARKNDAVAALKRQ 428
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R A+ V EE PE+YK+V DVV+ G+ ++ +LRP+ V+KG
Sbjct: 429 GILVRAATRATVDEEIPEAYKDVADVVEAVEGAGLGRRVARLRPLIVVKG 478
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 469 ERLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
E LA ++F +P GVGS + + + A D L G W++ G +D E E G +
Sbjct: 120 EALADALFRLVPAGVGSERRELRIGAADWPHLLTRGARWAVERGLGDPDDLEFIESTGAL 179
Query: 528 LNADPSKVSMRAKKRGLPQV 547
A+P +VS RA +RG Q+
Sbjct: 180 PGAEPDRVSARALERGGSQL 199
>gi|433642834|ref|YP_007288593.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|432159382|emb|CCK56686.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
Length = 432
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIESHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTTGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|308232196|ref|ZP_07415246.2| hypothetical protein TMAG_02440 [Mycobacterium tuberculosis
SUMu001]
gi|308374642|ref|ZP_07436834.2| hypothetical protein TMFG_03878 [Mycobacterium tuberculosis
SUMu006]
gi|308377072|ref|ZP_07441062.2| hypothetical protein TMHG_01828 [Mycobacterium tuberculosis
SUMu008]
gi|308380422|ref|ZP_07489903.2| hypothetical protein TMKG_03063 [Mycobacterium tuberculosis
SUMu011]
gi|308214717|gb|EFO74116.1| hypothetical protein TMAG_02440 [Mycobacterium tuberculosis
SUMu001]
gi|308341217|gb|EFP30068.1| hypothetical protein TMFG_03878 [Mycobacterium tuberculosis
SUMu006]
gi|308349024|gb|EFP37875.1| hypothetical protein TMHG_01828 [Mycobacterium tuberculosis
SUMu008]
gi|308361534|gb|EFP50385.1| hypothetical protein TMKG_03063 [Mycobacterium tuberculosis
SUMu011]
Length = 440
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 157 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 214
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 215 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 274
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 275 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 332
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 333 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 390
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 391 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 440
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 74 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 133
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 134 ERCEDGGVMTGADAAKISDRALQRGLGQI 162
>gi|289448283|ref|ZP_06438027.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289421241|gb|EFD18442.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length = 432
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLVSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|308379263|ref|ZP_07485684.2| hypothetical protein TMJG_01614 [Mycobacterium tuberculosis
SUMu010]
gi|424948296|ref|ZP_18363992.1| hypothetical protein NCGM2209_2939 [Mycobacterium tuberculosis
NCGM2209]
gi|308357592|gb|EFP46443.1| hypothetical protein TMJG_01614 [Mycobacterium tuberculosis
SUMu010]
gi|358232811|dbj|GAA46303.1| hypothetical protein NCGM2209_2939 [Mycobacterium tuberculosis
NCGM2209]
Length = 433
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 150 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 207
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 208 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 267
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 268 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 325
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 326 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 383
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 384 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 433
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 67 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 126
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 127 ERCEDGGVMTGADAAKISDRALQRGLGQI 155
>gi|31793817|ref|NP_856310.1| hypothetical protein Mb2664 [Mycobacterium bovis AF2122/97]
gi|57117009|ref|NP_217147.2| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
gi|121638520|ref|YP_978744.1| hypothetical protein BCG_2658 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662471|ref|YP_001283994.1| hypothetical protein MRA_2659 [Mycobacterium tuberculosis H37Ra]
gi|148823825|ref|YP_001288579.1| hypothetical protein TBFG_12650 [Mycobacterium tuberculosis F11]
gi|224991014|ref|YP_002645701.1| hypothetical protein JTY_2652 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798286|ref|YP_003031287.1| hypothetical protein TBMG_01340 [Mycobacterium tuberculosis KZN
1435]
gi|254551683|ref|ZP_05142130.1| hypothetical protein Mtube_14704 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289444172|ref|ZP_06433916.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289575343|ref|ZP_06455570.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289751257|ref|ZP_06510635.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754751|ref|ZP_06514129.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289762805|ref|ZP_06522183.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294993092|ref|ZP_06798783.1| hypothetical protein Mtub2_00925 [Mycobacterium tuberculosis 210]
gi|297635243|ref|ZP_06953023.1| hypothetical protein MtubK4_14025 [Mycobacterium tuberculosis KZN
4207]
gi|297732237|ref|ZP_06961355.1| hypothetical protein MtubKR_14164 [Mycobacterium tuberculosis KZN
R506]
gi|298526107|ref|ZP_07013516.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306780810|ref|ZP_07419147.1| hypothetical protein TMBG_02769 [Mycobacterium tuberculosis
SUMu002]
gi|306790036|ref|ZP_07428358.1| hypothetical protein TMDG_00349 [Mycobacterium tuberculosis
SUMu004]
gi|306794117|ref|ZP_07432419.1| hypothetical protein TMEG_03311 [Mycobacterium tuberculosis
SUMu005]
gi|306807566|ref|ZP_07444234.1| hypothetical protein TMGG_02239 [Mycobacterium tuberculosis
SUMu007]
gi|306968683|ref|ZP_07481344.1| hypothetical protein TMIG_03962 [Mycobacterium tuberculosis
SUMu009]
gi|313659571|ref|ZP_07816451.1| hypothetical protein MtubKV_14174 [Mycobacterium tuberculosis KZN
V2475]
gi|339632658|ref|YP_004724300.1| hypothetical protein MAF_26500 [Mycobacterium africanum GM041182]
gi|375295551|ref|YP_005099818.1| hypothetical protein TBSG_01350 [Mycobacterium tuberculosis KZN
4207]
gi|378772374|ref|YP_005172107.1| hypothetical protein BCGMEX_2650 [Mycobacterium bovis BCG str.
Mexico]
gi|383308397|ref|YP_005361208.1| hypothetical protein MRGA327_16190 [Mycobacterium tuberculosis
RGTB327]
gi|385991932|ref|YP_005910230.1| hypothetical protein [Mycobacterium tuberculosis CCDC5180]
gi|385999413|ref|YP_005917712.1| hypothetical protein MTCTRI2_2681 [Mycobacterium tuberculosis
CTRI-2]
gi|392387268|ref|YP_005308897.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392431759|ref|YP_006472803.1| hypothetical protein TBXG_001329 [Mycobacterium tuberculosis KZN
605]
gi|397674539|ref|YP_006516074.1| hypothetical protein RVBD_2631 [Mycobacterium tuberculosis H37Rv]
gi|424804967|ref|ZP_18230398.1| hypothetical protein TBPG_02141 [Mycobacterium tuberculosis W-148]
gi|433627768|ref|YP_007261397.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|449064712|ref|YP_007431795.1| hypothetical protein K60_027370 [Mycobacterium bovis BCG str. Korea
1168P]
gi|38258686|sp|P59975.1|RTCB_MYCBO RecName: Full=RNA-splicing ligase RtcB
gi|46397847|sp|P71930.5|RTCB_MYCTU RecName: Full=RNA-splicing ligase RtcB
gi|31619411|emb|CAD94849.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494168|emb|CAL72646.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506623|gb|ABQ74432.1| hypothetical protein MRA_2659 [Mycobacterium tuberculosis H37Ra]
gi|148722352|gb|ABR06977.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774127|dbj|BAH26933.1| hypothetical protein JTY_2652 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319789|gb|ACT24392.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289417091|gb|EFD14331.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289539774|gb|EFD44352.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289691844|gb|EFD59273.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695338|gb|EFD62767.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289710311|gb|EFD74327.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|298495901|gb|EFI31195.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308326365|gb|EFP15216.1| hypothetical protein TMBG_02769 [Mycobacterium tuberculosis
SUMu002]
gi|308333523|gb|EFP22374.1| hypothetical protein TMDG_00349 [Mycobacterium tuberculosis
SUMu004]
gi|308337550|gb|EFP26401.1| hypothetical protein TMEG_03311 [Mycobacterium tuberculosis
SUMu005]
gi|308346009|gb|EFP34860.1| hypothetical protein TMGG_02239 [Mycobacterium tuberculosis
SUMu007]
gi|308353752|gb|EFP42603.1| hypothetical protein TMIG_03962 [Mycobacterium tuberculosis
SUMu009]
gi|326904243|gb|EGE51176.1| hypothetical protein TBPG_02141 [Mycobacterium tuberculosis W-148]
gi|328458056|gb|AEB03479.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339299125|gb|AEJ51235.1| hypothetical protein CCDC5180_2398 [Mycobacterium tuberculosis
CCDC5180]
gi|339332014|emb|CCC27720.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
gi|341602558|emb|CCC65234.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|344220460|gb|AEN01091.1| hypothetical protein MTCTRI2_2681 [Mycobacterium tuberculosis
CTRI-2]
gi|356594695|gb|AET19924.1| Hypothetical protein BCGMEX_2650 [Mycobacterium bovis BCG str.
Mexico]
gi|378545819|emb|CCE38097.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380722350|gb|AFE17459.1| hypothetical protein MRGA327_16190 [Mycobacterium tuberculosis
RGTB327]
gi|392053168|gb|AFM48726.1| hypothetical protein TBXG_001329 [Mycobacterium tuberculosis KZN
605]
gi|395139444|gb|AFN50603.1| hypothetical protein RVBD_2631 [Mycobacterium tuberculosis H37Rv]
gi|432155374|emb|CCK52624.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|444896168|emb|CCP45429.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
gi|449033220|gb|AGE68647.1| hypothetical protein K60_027370 [Mycobacterium bovis BCG str. Korea
1168P]
Length = 432
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|313679183|ref|YP_004056922.1| hypothetical protein [Oceanithermus profundus DSM 14977]
gi|313151898|gb|ADR35749.1| protein of unknown function UPF0027 [Oceanithermus profundus DSM
14977]
Length = 478
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 178/282 (63%), Gaps = 12/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V+++YD AA+ G+ + GQV V+IH+GSRG GHQV D + + + +
Sbjct: 203 SGNHFLEVQYVEQVYDPEAAAAFGLAE-GQVTVLIHTGSRGLGHQVCQDHVQKFLQVAPK 261
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
IE DRQLA A I S + +A+ A + L H + +AF + P +
Sbjct: 262 YGIELVDRQLAAAPIESPEGRAYLGAMAAAANYAFANRQLITHYVREAF-EAAGFAPREH 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ V+YD++HN AK E H G+Q +LVHRKG+TRAF P P +P Y GQPVL+ G
Sbjct: 321 ALRVVYDLAHNNAKFETH--GGRQ--VLVHRKGATRAFGPGAPDLPPAYAAVGQPVLVPG 376
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYVL GTE M+++FGS+CHGAGR LSRA+S++ + ++++ +L + GI +R S
Sbjct: 377 DMGRYSYVLVGTEGAMEKSFGSSCHGAGRVLSRARSKKQVKGRDLVRELAAAGIELRATS 436
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAPE+YK+V +VV G+ ++ +LRPV V+KG
Sbjct: 437 RRTVAEEAPEAYKDVAEVVQVVEGAGLGRRVARLRPVIVVKG 478
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGSK + +N R L LE G W +R+G+ D E E GR+
Sbjct: 121 LADRLYERVPAGVGSKRRDVKLNRRSLARVLEEGAGWVVRQGWGEPADLEFIESGGRLEG 180
Query: 530 ADPSKVSMRAKKRGLPQV 547
ADP +VS RA +RGLPQ+
Sbjct: 181 ADPGRVSERAYERGLPQL 198
>gi|374856010|dbj|BAL58864.1| hypothetical conserved protein [uncultured candidate division OP1
bacterium]
Length = 481
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 171/282 (60%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V EI+D+ A G+ QV VMIH GSRG+GHQ+ TD L +E+ +
Sbjct: 201 SGNHFLEVQRVAEIFDEDIARAFGLFQ-DQVVVMIHCGSRGYGHQICTDYLRLIEREFRD 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
DRQLACA ++S + + N + + MH + F K F + +L
Sbjct: 260 LLSSLPDRQLACAPVHSKLAQDYYAAMNCAINFAWCNRQIIMHKARECFEKVFRASWREL 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
MH++YDV+HNI K E H ++G++ + VHRKG+TRAFP P +P ++ GQP++I G
Sbjct: 320 GMHLLYDVAHNIGKRETHRINGREVDVYVHRKGATRAFPAGRPEVPEAFRRVGQPIIIPG 379
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT Y+L GTE MQ+TFGST HGAGR +SR K+ + ++ +L +GI +R S
Sbjct: 380 SMGTGGYILVGTEIAMQQTFGSTAHGAGRVMSRTKATKQYRADNLIAELRERGIYVRGQS 439
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP +YK++ +VV H VGI ++ KL PV IKG
Sbjct: 440 RATIAEEAPGAYKDLDEVVRVSHEVGIGRRVAKLLPVCNIKG 481
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
L ++F IP G+G I+ ++D L++ G+ W+LR GY ED EHCE+ G
Sbjct: 119 LVDTLFSEIPTGIGEGSIVGKLSKDELDKVAVQGVQWALRHGYAVEEDLEHCEDNGVRPG 178
Query: 530 ADPSKVSMRAKKRGLPQV 547
ADP VS AK+R Q+
Sbjct: 179 ADPDAVSTEAKERAQKQL 196
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F IP G+G I+ ++D L++ G+ W+LR GY ED EH E
Sbjct: 119 LVDTLFSEIPTGIGEGSIVGKLSKDELDKVAVQGVQWALRHGYAVEEDLEHCE 171
>gi|15842171|ref|NP_337208.1| hypothetical protein MT2707 [Mycobacterium tuberculosis CDC1551]
gi|13882458|gb|AAK47022.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|379028942|dbj|BAL66675.1| hypothetical protein ERDMAN_2891 [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|440582110|emb|CCG12513.1| hypothetical protein MT7199_2665 [Mycobacterium tuberculosis
7199-99]
Length = 432
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRDIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|254365299|ref|ZP_04981344.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134150812|gb|EBA42857.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
Length = 432
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRDIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 447 LEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARD-LEEALEMGMD 505
+ G+ + EG E + + + IP GVG+ G+ + R+ L+E L G
Sbjct: 53 ISCGVRLLVGEGLDRKELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGAR 112
Query: 506 WSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+++ +G+ A D E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 113 FAVEQGHGVALDLERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|433631751|ref|YP_007265379.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
gi|432163344|emb|CCK60752.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
Length = 432
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 180/292 (61%), Gaps = 15/292 (5%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGITVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 ---NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
TP DL +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADETGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELA 322
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L
Sbjct: 323 AVGQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLA 380
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 381 KRGIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|91203292|emb|CAJ72931.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 483
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 178/282 (63%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ V EI+D+ A +G+E G + +MIH+GSRG G+QV D + M +A +
Sbjct: 203 SGNHFVEVGYVSEIFDEKIARTLGLEKDG-ITIMIHTGSRGLGYQVCDDFIKVMIRASGK 261
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
NIE DRQL CA INS + + + + + H + ++F + + +P +
Sbjct: 262 YNIELPDRQLCCAPINSPEGRDYFAAMACAANYAFANRQMITHWVRESFERALHVSPKES 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YD HNIAK E+H+V+G++K L VHRKG+TRAFPP+HP P Y+ GQPV I G
Sbjct: 322 RISLVYDACHNIAKFEDHLVNGQKKRLCVHRKGATRAFPPNHPDTPAAYKAVGQPVFIPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG CSYVL GTEK +TFGSTCHGAGR +SR ++ + + + +L+ +GI +R S
Sbjct: 382 DMGRCSYVLVGTEKAYSDTFGSTCHGAGRVMSRNQATKVAKGRSIAQELKEKGILVRADS 441
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EE ++YK+VT VVD GISKK +L+P+ VIKG
Sbjct: 442 RATLEEELSDAYKDVTKVVDVVQHAGISKKVAQLKPLCVIKG 483
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYI 513
L+ G E E + S+F +IP GVGS + + ++ +++ L+ G W++ GY
Sbjct: 105 LKTGLCRVEISGKLESIVDSLFVNIPSGVGSHRKDLKLSQHEVKNVLKNGAQWAVSHGYG 164
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED EH EE G + ADP VS RA +RGL Q+
Sbjct: 165 SKEDLEHIEEKGCIFGADPELVSTRAIERGLAQL 198
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M+V+G+ + ++ M++E++ ++Q+ NVA LPGIVG S+G+PD+H
Sbjct: 24 MHVDGIVYADES----MMKEIQKD----------ESLQQVINVACLPGIVGHSLGMPDIH 69
>gi|288818329|ref|YP_003432677.1| hypothetical protein HTH_1018 [Hydrogenobacter thermophilus TK-6]
gi|384129089|ref|YP_005511702.1| hypothetical protein [Hydrogenobacter thermophilus TK-6]
gi|288787729|dbj|BAI69476.1| conserved hypothetical protein [Hydrogenobacter thermophilus TK-6]
gi|308751926|gb|ADO45409.1| protein of unknown function UPF0027 [Hydrogenobacter thermophilus
TK-6]
Length = 480
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 174/282 (61%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDEIYD+ A ++G+ GQ+ +M+HSGSRGFGHQV D L + A+++
Sbjct: 202 SGNHFVEVQTVDEIYDEQIAKRLGLGK-GQITIMVHSGSRGFGHQVCVDYLKVAKDALEK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDM------HVIYDAFAKQFNTTPDDL 249
IE D QLAC S + + + K N + + D + + ++L
Sbjct: 261 YRIEIPDMQLACMPFKSKEGQDYFKAMNAAANYAFANRQILGFITADVIRRFLGISWEEL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
VIYD++HNI K E++ +DGK K LL+HRKG+TRAFPP++P +P Y+ GQPVLI G
Sbjct: 321 GYRVIYDLAHNIGKIEKYTIDGKDKELLIHRKGATRAFPPYNPDVPPAYRDIGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+G S++L GT K M+ +FGS CHGAGR +SR K++ + + + LE G+ +
Sbjct: 381 DVGRYSFLLVGTHKSMEISFGSACHGAGRLMSRTKAKEYVKREGIEKVLE--GLVVVARG 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VMEE P++YK+VT+VV H +GI+K + +P+ +KG
Sbjct: 439 KGTVMEEVPQAYKDVTEVVRVVHELGIAKLVARFKPLGTLKG 480
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ L + + +P GVGS G + ++ L+E G W++ G+ ED H E G +
Sbjct: 119 QELMKEILSKVPAGVGSTGRLKLSKEQLKEVAIKGARWAVEHGFGLEEDLLHIESSGTLA 178
Query: 529 NADPSKVSMRAKKRG 543
NADP KVS A +RG
Sbjct: 179 NADPDKVSNFAYERG 193
>gi|410697846|gb|AFV76914.1| hypothetical protein Theos_1904 [Thermus oshimai JL-2]
Length = 959
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 176/288 (61%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDEIYD AA G+ QV V+IH+GSRG GHQV D + +
Sbjct: 678 QIGTLGSGNHFLEVQYVDEIYDPEAAEAYGLFP-NQVTVLIHTGSRGLGHQVCQDYVERF 736
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
K R IE D+QLA A I S + +A+ + + L H + +AF +
Sbjct: 737 LKVAPRYGIELVDKQLAAAPIKSPEGEAYLQAMAAAANFAFANRQLIAHFVREAF-EAVG 795
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
P D + V+YD++HN AK EEH + +LVHRKG+TRAF P HP IP +Y+ GQ
Sbjct: 796 FAPRDHGLRVLYDLAHNNAKFEEHF----GRRVLVHRKGATRAFGPGHPEIPPEYRKVGQ 851
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTEK M +FGS+CHGAGR +SR ++++ + ++ +L +GI
Sbjct: 852 PVLVPGDMGRYSYVLAGTEKAMAVSFGSSCHGAGRKMSRHQAKKAARERNLVKELAERGI 911
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI +K +LRP+ V+KG
Sbjct: 912 LVRAATRATVDEEMPEAYKDVSVVVEAVQGAGIGRKVARLRPLIVVKG 959
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L E L+ G + +R G+ + ED E GR+
Sbjct: 602 LADALYRLVPSGVGSERKDVRFSKRELREILKEGAGFLIRRGFGYPEDLRFIESEGRLPW 661
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P +VS RA +RG PQ+
Sbjct: 662 ANPDQVSERAFERGAPQI 679
>gi|422813684|ref|ZP_16862056.1| hypothetical protein TMMG_02643 [Mycobacterium tuberculosis
CDC1551A]
gi|323718783|gb|EGB27941.1| hypothetical protein TMMG_02643 [Mycobacterium tuberculosis
CDC1551A]
Length = 440
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 157 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 214
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 215 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 274
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 275 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 332
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 333 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 390
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 391 GIIVRGTSRRDIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 440
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 74 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 133
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 134 ERCEDGGVMTGADAAKISDRALQRGLGQI 162
>gi|386284342|ref|ZP_10061564.1| hypothetical protein SULAR_03807 [Sulfurovum sp. AR]
gi|385344627|gb|EIF51341.1| hypothetical protein SULAR_03807 [Sulfurovum sp. AR]
Length = 478
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 173/282 (61%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IYD+ AA GI+ GQ+ V IH GSR GHQ+ T+ LV + KA R
Sbjct: 202 SGNHYLEVQEVAKIYDEKAAEAFGIKK-GQIVVSIHCGSRALGHQIGTEYLVSLAKAATR 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I+S + + + N + + H+ +AF F +
Sbjct: 261 LGISLPDRELACAPIHSPEGQEYIGAMNAAINCAMANRQVLTHMTRNAFECLFK----GV 316
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDVSHN K E H+V+G ++ L VHRKG+TRAF P HP IPV Y+ GQPV+IGG
Sbjct: 317 KIETLYDVSHNTCKEETHLVNGVERNLWVHRKGATRAFGPGHPDIPVRYRSVGQPVIIGG 376
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT++G + F S HGAGRA+SR ++ + ++V+ +L +GI IR AS
Sbjct: 377 SMGTGSYILAGTKEGEERAFSSASHGAGRAMSRHQALKLWKGKQVIQELAQKGILIRSAS 436
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP++YK+V V G++++ LRP IKG
Sbjct: 437 MRGVAEEAPDAYKDVDLVAQATEKAGLARRVAFLRPKVCIKG 478
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+LA + IP GVG +G + + +L++ L G W++ GY ED EE G+M
Sbjct: 118 LTKLADELSRAIPAGVGREGKLRLTLDELDDVLRGGAQWAIHHGYGLGEDLSFVEEMGKM 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
A P +S AK+R L +V
Sbjct: 178 QGARPENISRLAKERQLGEV 197
>gi|74318377|ref|YP_316117.1| hypothetical protein Tbd_2359 [Thiobacillus denitrificans ATCC
25259]
gi|74057872|gb|AAZ98312.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 476
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/278 (44%), Positives = 171/278 (61%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IYD AA + + VG++ V IH GSRG GHQ+ T+ L M A
Sbjct: 200 SGNHYLELQEVTQIYDVPAADRFRLR-VGELVVSIHCGSRGLGHQIGTEFLKAMVLAAPA 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I+ DR+LACA I+S +++ A + T + VI + F D + +
Sbjct: 259 HGIDLPDRELACAPIDSALGQSYLGAMRAATNCALANREVITHLVRQVFADVVPDSHLAL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E + VDGK K L VHRKG+TRAF P HP +P + + GQPV++GG+MGT
Sbjct: 319 VYDVSHNTCKQESYTVDGKAKRLYVHRKGATRAFGPGHPGLPPELRDIGQPVIVGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GTE Q F S CHGAGRA+SR ++ R + ++++L +QG+ IR S + V
Sbjct: 379 ASYILVGTEASHQLAFSSACHGAGRAMSRHQASRTWHGRALVDELAAQGVLIRSPSSRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V VVD G+++K +LRP+ IKG
Sbjct: 439 AEEAPGAYKDVRAVVDAADRAGLARKVARLRPLVCIKG 476
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L G A+ ++LA +F IP GVGS G + +N+ D++ L G W++ GY
Sbjct: 102 TLHTGLTVADIAPVKQKLADRLFASIPAGVGSSGKLRLNSVDMDAMLRGGACWAVERGYG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
D E EE G + A P VS AK+R
Sbjct: 162 SPADLERIEERGCVAGAAPEHVSEAAKRR 190
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ ++LA +F IP GVGS G + +N+ D++ L G W++ GY D E E
Sbjct: 115 VKQKLADRLFASIPAGVGSSGKLRLNSVDMDAMLRGGACWAVERGYGSPADLERIE 170
>gi|452961400|gb|EME66702.1| hypothetical protein G352_03846 [Rhodococcus ruber BKS 20-38]
Length = 498
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 172/292 (58%), Gaps = 15/292 (5%)
Query: 127 RGFGHQVAT-AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDA 185
RG G + +GNH+ E+Q V+ I+D A MG+ DVG VCVMIH GSRG GHQ+ TD
Sbjct: 215 RGLGQLGSLGSGNHFLEVQAVERIFDPDTARPMGL-DVGTVCVMIHCGSRGLGHQICTDH 273
Query: 186 LVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA 239
+ +M KAM R I DRQLAC + S + +A+ A + L F
Sbjct: 274 VREMGKAMGRYGIHVPDRQLACVPVRSPEGEAYLGAMVAAANYGRANRQLLTEAARRVFE 333
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
TT D ++YD+SHN+AK E H VDG+ +TL VHRKG+TR+ PP HP +P D
Sbjct: 334 DTAGTTLD-----LLYDISHNLAKLERHEVDGRLRTLCVHRKGATRSLPPRHPDVPADLV 388
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI GTMGT SYVL G F ST HGAGR SR ++ R+ D + V + LE
Sbjct: 389 DVGQPVLIPGTMGTASYVLAGIAG--NPAFYSTAHGAGRVQSRHRAARHTDGRAVRDALE 446
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S G+ +R +S + + EE P++YK++ V + G++++ +L P+ V+KG
Sbjct: 447 SHGVLVRGSSWRGLAEEKPQAYKDIDAVTEVSERAGLARRVARLVPLGVVKG 498
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 479 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 537
+P G+ ++G+ + R L E LE G +++++G+ D E CE+ G + ADP+ VS
Sbjct: 151 VPRGMQTRGVWELPNRTVLHEVLEGGARFAVQQGHGVVRDLERCEDRGVLDGADPAAVSD 210
Query: 538 RAKKRGLPQV 547
RA +RGL Q+
Sbjct: 211 RAVERGLGQL 220
>gi|392412497|ref|YP_006449104.1| hypothetical protein Desti_4203 [Desulfomonile tiedjei DSM 6799]
gi|390625633|gb|AFM26840.1| hypothetical protein Desti_4203 [Desulfomonile tiedjei DSM 6799]
Length = 482
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 175/282 (62%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI +++I+D+ A++ GI QV VM+HSGSRG G+QV D L +M K++
Sbjct: 202 SGNHFLEIGFIEKIFDEDTAAQWGIVQ-DQVTVMVHSGSRGLGYQVCDDFLARMVKSVAA 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ IE DRQLAC R+++ + + A F + MH+ + K +P +L
Sbjct: 261 EGIELPDRQLACTRLHTPLAREYLGAMAAAANFAFANRQILMHLARTTWEKSLGISPREL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++YDV HN+AK E H ++G+++ ++VHRKG+TRAFP +HP + Y+ TGQPVLI G
Sbjct: 321 QFRLLYDVCHNVAKFEMHTLNGQKRRVMVHRKGATRAFPKNHPELSEVYRSTGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SY+L G E M ETFGS CHGAGR LSR ++ R + + +L+ Q + R
Sbjct: 381 DMGRASYILAGQEGAMNETFGSACHGAGRILSRHEALRQTKGRSIERELQDQNVYPRWVG 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + EE P +YK+V+ VVD G+++K ++RP+ V+KG
Sbjct: 441 RKTLREEFPHAYKDVSIVVDVVQRAGLARKVARIRPMGVVKG 482
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L S F +P GVGS+G I +N +L + L+ G W++ +G D + E G + A
Sbjct: 121 LIDSFFAKVPSGVGSRGGIRLNKSELSKVLKAGAAWAVSQGMGEESDLDRIEAGGALQGA 180
Query: 531 DPSKVSMRAKKRGLPQV 547
DPS VS RA +RG Q+
Sbjct: 181 DPSVVSDRAFERGKDQL 197
>gi|328949730|ref|YP_004367065.1| hypothetical protein Marky_0194 [Marinithermus hydrothermalis DSM
14884]
gi|328450054|gb|AEB10955.1| protein of unknown function UPF0027 [Marinithermus hydrothermalis
DSM 14884]
Length = 479
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 177/290 (61%), Gaps = 14/290 (4%)
Query: 130 GHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV 187
G Q+ T +GNH+ E+Q VDE+YD AA G+ VGQV V+IH+GSRG GHQV D +
Sbjct: 196 GPQLGTLGSGNHFLEVQYVDEVYDPEAAEAYGLW-VGQVTVLIHTGSRGLGHQVCQDYVE 254
Query: 188 QMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQ 241
+ +A +R IE DRQLA A I S + + + A F L H + AF +
Sbjct: 255 RFLQAARRYGIELVDRQLAAAPIESPEGQDYLHAMAAAANFAFANRQLITHNVRLAF-ED 313
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
P D + V+YD++HN AK EE+ + +LVHRKG+TRAF P P +P ++
Sbjct: 314 AGFLPRDHQLRVLYDLAHNNAKFEEY----AGRRVLVHRKGATRAFGPGAPDVPPAFRTV 369
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVL+ G MG S+VL GT M TFGS+CHGAGR +SR K+++ + ++ +LE+Q
Sbjct: 370 GQPVLVPGDMGRYSFVLAGTPGAMTRTFGSSCHGAGRQMSRHKAKKAARKRNLIAELEAQ 429
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R AS V EE PE+YK+V VVD H GI KK +LRP+ V+KG
Sbjct: 430 GILVRAASRATVDEEMPEAYKDVASVVDVVHGAGIGKKVARLRPLIVVKG 479
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 470 RLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
RLA +++ +P GVGS + + + +DL+ L G + +G+ A D E E GR+
Sbjct: 121 RLADALYRRVPAGVGSARRDVRWSPKDLKTVLREGARALVAQGFGEAADLERIESGGRLP 180
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP +VS RA +RG PQ+
Sbjct: 181 LADPDRVSARALERGGPQL 199
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ VF+ ND + + E S +KQ+ NVA LPGIVG ++ +PD+H
Sbjct: 22 MWVDAVFYANDEILAQLEAEGYAS------------LKQLVNVATLPGIVGPALAMPDIH 69
>gi|121999133|ref|YP_001003920.1| hypothetical protein Hhal_2355 [Halorhodospira halophila SL1]
gi|121590538|gb|ABM63118.1| protein of unknown function UPF0027 [Halorhodospira halophila SL1]
Length = 486
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 180/288 (62%), Gaps = 12/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
QV T +GNH+ EI VD++YD+ AA ++G+E G + VMIHSGSRG GHQV D LV M
Sbjct: 203 QVGTVGSGNHFIEIGCVDDVYDEAAARRLGLE-AGTLTVMIHSGSRGLGHQVCDDFLVTM 261
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFN 243
E+ R+ IE DRQLACA ++ + + + A F + FA+
Sbjct: 262 ERITGRNGIELPDRQLACAPLSCSAARDYLGAMQAAANFAYVNRQAMTQQVRRVFAEVLG 321
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
++ + ++YDVSHNIAK E H VDG+++ + VHRKG+TRAFPP HP +P D + GQ
Sbjct: 322 ---EEAHLELVYDVSHNIAKFERHRVDGEEREVCVHRKGATRAFPPGHPELPEDLRGLGQ 378
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G M SYVL GT+ ETFGS HGAGR LSR +++R + +++ +L GI
Sbjct: 379 PVLLPGDMTRYSYVLLGTQGAYAETFGSCAHGAGRRLSRRQAKRAAEGRDLDAELAEAGI 438
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R +S + V EE E+YK+V+DVVD GI ++ +LRP+ V+KG
Sbjct: 439 EVRASSRQTVAEELAEAYKDVSDVVDVVAHAGIGRRVARLRPLGVLKG 486
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+G+ F ND L +E++R++ V+Q+ANVA LPG+VGRS+G+PD+H
Sbjct: 29 MQVDGLIFANDAL----IEDIRDT----------EAVRQVANVACLPGVVGRSIGMPDIH 74
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 460 IWAED-KEHFERLAQSMFDHIPVGVG-SKGIIPMNARDLEEALEMGMDWSLREGYIWAED 517
+ AED H RL +F+ IP G+G G + RD+ L G W++ G ED
Sbjct: 115 LQAEDLGAHLPRLMDRLFERIPAGMGRGYGDTLLRNRDMRRLLREGAAWAVEVGLGEPED 174
Query: 518 KEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E+ G + ADP VS RA +RG QV
Sbjct: 175 LARIEDRGCLPGADPEAVSDRAIQRGRDQV 204
>gi|384916032|ref|ZP_10016232.1| conserved hypothetical protein [Methylacidiphilum fumariolicum
SolV]
gi|384526560|emb|CCG92103.1| conserved hypothetical protein [Methylacidiphilum fumariolicum
SolV]
Length = 476
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/278 (43%), Positives = 173/278 (62%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHYAE+Q+V +I+D+ A + I + G + V IH GSRG GHQ+ TD L +M ++
Sbjct: 200 SGNHYAEVQVVGKIFDEAIAKLLSIHE-GDIVVSIHCGSRGLGHQIGTDYLKEMVVCAQK 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
IE +R+LACA I S+ K + A + + ++ K F+ ++ M +
Sbjct: 259 LKIELPERELACAPIQSDLGKRYLGAMRAGINCALANRQILTHLIRKVFSYFFPNIFMPL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K EEH ++G K L VHRKG+TRAF P H IP D + GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKVEEHSINGGSKKLFVHRKGATRAFGPGHHEIPEDLKEAGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GT + + F S HGAGRA+SR+K+ + +E++ LE++GI IR S + V
Sbjct: 379 HSYILVGTTQSERLAFSSAVHGAGRAMSRSKALKEWKGKEIIKSLEAKGILIRAVSERGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+DVV+ H ++K +L P+ IKG
Sbjct: 439 AEEAPLAYKDVSDVVEAAHKAELAKLIARLDPLICIKG 476
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
+LA +F IP GVGS G I ++ ++++ L G W++ +GY ED + EE G M
Sbjct: 118 KLADLLFKEIPAGVGSHGKIHLDKNEMDKMLVGGAKWAIEQGYGKEEDLQRIEEGGCMPG 177
Query: 530 ADPSKVSMRAKKR 542
ADP VS AK+R
Sbjct: 178 ADPQAVSNLAKER 190
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ +LA +F IP GVGS G I ++ ++++ L G W++ +GY ED + E
Sbjct: 115 IKNKLADLLFKEIPAGVGSHGKIHLDKNEMDKMLVGGAKWAIEQGYGKEEDLQRIE 170
>gi|430761145|ref|YP_007217002.1| Protein RtcB [Thioalkalivibrio nitratireducens DSM 14787]
gi|430010769|gb|AGA33521.1| Protein RtcB [Thioalkalivibrio nitratireducens DSM 14787]
Length = 476
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 173/278 (62%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q + ++D A+ G+ + GQV V IH GSRG GHQ+ T+ L +M A K
Sbjct: 200 SGNHYLEVQHITRVFDPEVAAAFGLAE-GQVVVSIHCGSRGLGHQIGTEFLREMAIAAKG 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
IE DR+LACA I+S + + + L I A++ F D ++ +
Sbjct: 259 HGIELPDRELACAPIHSEIGQRYLGAMRAAINCALANRQILTHLAREVFAEVLPDANLRL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN KTE H+VDG+ + L VHRKG+TRAF P HP +P + GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKTERHVVDGRDRELYVHRKGATRAFGPGHPDLPEALRGVGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GT +G + +F S CHGAGRA+SR ++ R + ++++L ++GI IR S + V
Sbjct: 379 ASYILVGTNEGERLSFNSACHGAGRAMSRHQATRQWRGRALVDELAARGILIRSPSLRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+ VV H G+++ ++ P+ IKG
Sbjct: 439 AEEAPGAYKDVSRVVQASHDAGLARLVARVEPMVCIKG 476
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
RLA ++F IP G+GS G I + + + + L G W++ G+ ED E EE G+M
Sbjct: 118 RLADALFAGIPAGLGSTGQIHLRDQQMTDMLRGGAAWAVERGFGQPEDLERIEERGQMAG 177
Query: 530 ADPSKVSMRAKKR 542
ADP VS +A+KR
Sbjct: 178 ADPEAVSQQARKR 190
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ RLA ++F IP G+GS G I + + + + L G W++ G+ ED E E Q
Sbjct: 115 VQPRLADALFAGIPAGLGSTGQIHLRDQQMTDMLRGGAAWAVERGFGQPEDLERIEERGQ 174
>gi|85691101|ref|XP_965950.1| hypothetical protein ECU01_1120 [Encephalitozoon cuniculi GB-M1]
gi|19068517|emb|CAD24985.1| similarity to HYPOTHETICAL PROTEIN YT6J_CAEEL [Encephalitozoon
cuniculi GB-M1]
Length = 477
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 180/296 (60%), Gaps = 22/296 (7%)
Query: 126 SRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
S+G G +Q+ T +GNHY E+Q VDE+YD A MGI GQ+ VMIH+GSRG GH V
Sbjct: 194 SKGKGLNQLGTLGSGNHYLEVQYVDEVYDAEKAGIMGIGK-GQIVVMIHTGSRGLGHGVC 252
Query: 183 TDALVQME-KAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
+L++M KA+ + QLAC+ NS +++ + A F +
Sbjct: 253 HSSLMKMAGKAL-------DCSQLACSPYNSKESQEYLLSMGCAANFAFVNRAMVTEKAR 305
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
AF K F + + ++YDV HNI K E+H V G + +VHRKG++RAFPPHHP IP
Sbjct: 306 QAFGKVFPGS----RLELVYDVCHNIVKIEKHRVHGVEYDAIVHRKGASRAFPPHHPDIP 361
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPV++GG+MGT SY+L G+EK M +FGSTCHGAGR LSR+ S+ ++ V
Sbjct: 362 WKYREIGQPVVVGGSMGTYSYILCGSEKSMDLSFGSTCHGAGRVLSRSMSKTLFTHESVC 421
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ L S+ I R S V+EEAP YK+V VVD VG+++K +L+P VIKG
Sbjct: 422 DLLRSRDIVFRCPSDLGVVEEAPGCYKDVNRVVDLSDRVGLTEKVCRLKPCLVIKG 477
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M +V++ L K ++ EL G L + QI++V +LPG++G +GLPD+H
Sbjct: 21 MRTSATIYVDEELRKPLMSELE-------AGKGLSSIGQISDVCSLPGLIGDVIGLPDIH 73
Query: 61 S 61
+
Sbjct: 74 T 74
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ LA +F+ IP G+GS + L LE G+ + L+ I ED E+CE G M
Sbjct: 125 DALADELFNIIPTGMGSDRRSRIGLDVLNSVLEQGLGYLLKSKEISDEDVEYCESNGCM- 183
Query: 529 NADPSKVSMRAKKRGLPQV 547
D V ++K +GL Q+
Sbjct: 184 AGDSRFVGQKSKGKGLNQL 202
>gi|220935119|ref|YP_002514018.1| hypothetical protein Tgr7_1950 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996429|gb|ACL73031.1| protein of unknown function UPF0027 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 476
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 167/282 (59%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V EIYD A G+ VGQV V IH GSRG GHQ+ T+ L +M A R
Sbjct: 200 SGNHYLEVQHVTEIYDPAVAKVFGLA-VGQVVVSIHCGSRGLGHQIGTEFLREMAVAANR 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
IE DR+LACA I S + + + + + H+ FAK DL
Sbjct: 259 HGIELPDRELACAPIRSELGERYLGAMRSAINCALANRQILTHLTRRVFAKVLPEARLDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+YDVSHN K E H +DG + L VHRKG+TRAF P HP +P + GQPVLIGG
Sbjct: 319 ----LYDVSHNTCKVETHSIDGSPRQLYVHRKGATRAFGPGHPDLPDALRPVGQPVLIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT +G + +F S CHGAGRA+SR + R + ++++L +GI IR S
Sbjct: 375 SMGTASYILVGTNEGERLSFNSACHGAGRAMSRHAATRQWRGRALVDELAGRGILIRSPS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V++VV H G+++ ++ P+ IKG
Sbjct: 435 LRGVAEEAPGAYKDVSEVVKATHQAGLARMVARVEPLVCIKG 476
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F+ IP G+GS G I + + E L G W++++GY A D E EE+GRM A
Sbjct: 119 LADALFESIPAGLGSTGYIHLRDHQMTEMLAGGAVWAVQQGYGEAADLERIEEHGRMAGA 178
Query: 531 DPSKVSMRAKKR 542
DP VS +A+KR
Sbjct: 179 DPHAVSEQARKR 190
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++F+ IP G+GS G I + + E L G W++++GY A D E E
Sbjct: 119 LADALFESIPAGLGSTGYIHLRDHQMTEMLAGGAVWAVQQGYGEAADLERIE 170
>gi|449329755|gb|AGE96024.1| hypothetical protein ECU01_1120 [Encephalitozoon cuniculi]
Length = 477
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 180/296 (60%), Gaps = 22/296 (7%)
Query: 126 SRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
S+G G +Q+ T +GNHY E+Q VDE+YD A MGI GQ+ VMIH+GSRG GH V
Sbjct: 194 SKGKGLNQLGTLGSGNHYLEVQYVDEVYDAEKAGIMGIGK-GQIVVMIHTGSRGLGHGVC 252
Query: 183 TDALVQME-KAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
+L++M KA+ + QLAC+ NS +++ + A F +
Sbjct: 253 HSSLMKMAGKAL-------DCSQLACSPYNSKESQEYLLSMGCAANFAFVNRAMVTEKAR 305
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
AF K F + + ++YDV HNI K E+H V G + +VHRKG++RAFPPHHP IP
Sbjct: 306 QAFGKVFPGS----RLELVYDVCHNIVKIEKHRVHGVEYDAIVHRKGASRAFPPHHPDIP 361
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPV++GG+MGT SY+L G+EK M +FGSTCHGAGR LSR+ S+ ++ V
Sbjct: 362 WKYREIGQPVVVGGSMGTYSYILCGSEKSMDLSFGSTCHGAGRVLSRSMSKTLFTHESVC 421
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ L S+ I R S V+EEAP YK+V VVD VG+++K +L+P VIKG
Sbjct: 422 DFLRSRDIVFRCPSDLGVVEEAPGCYKDVNRVVDLSDRVGLTEKVCRLKPCLVIKG 477
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ LA +F+ IP G+GS + L LE G+ + L+ I ED E+CE G M
Sbjct: 125 DALADELFNIIPTGMGSDRRSRIGLDVLNSVLEQGLGYLLKSKEISDEDVEYCESNGCM- 183
Query: 529 NADPSKVSMRAKKRGLPQV 547
D V ++K +GL Q+
Sbjct: 184 AGDSRFVGQKSKGKGLNQL 202
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M +V++ L K ++ EL G L + QI++V +LPG++G +GLPD+H
Sbjct: 21 MRTSATIYVDEELRKPLMSELE-------AGKGLSSIGQISDVCSLPGLIGDVIGLPDIH 73
Query: 61 S 61
+
Sbjct: 74 T 74
>gi|193212285|ref|YP_001998238.1| hypothetical protein Cpar_0618 [Chlorobaculum parvum NCIB 8327]
gi|193085762|gb|ACF11038.1| protein of unknown function UPF0027 [Chlorobaculum parvum NCIB
8327]
Length = 465
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/440 (34%), Positives = 227/440 (51%), Gaps = 85/440 (19%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH------------------------------------ 60
++Q+ NVA LPGIVG ++ +PD+H
Sbjct: 46 LEQLVNVATLPGIVGYALAMPDIHEGYGFPIGGVAAFDLDEGVISPGGIGYDINCGVRLL 105
Query: 61 -SVPSTQWLSDNTMR-SSNIWKRSPLTLGAGNH--YAEIQIVDEIYDKWAASKMGI---- 112
S + L D+ + I+++ P +G GN ++ Q+ D++ A +
Sbjct: 106 ASSERFEELRDSIGELAREIYRQVPSGVGHGNQITFSSKQL-DQVLRDGAPRMVEFGYGE 164
Query: 113 -EDVGQV------------CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASK 157
ED+G + V H+ RG Q+ T AGNH+ EI +D IYD AA +
Sbjct: 165 PEDLGHIESGGVLDAADASKVSEHAKQRGR-DQLGTMGAGNHFVEIDRIDTIYDCDAAGR 223
Query: 158 MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKA 217
MG+ + GQV + +H+GSRG GHQ+ATD + M +AM I DR+L C S + +
Sbjct: 224 MGLFE-GQVVIQLHTGSRGLGHQIATDFIRVMNRAMPMYGITVPDRELCCVPFRSAEGQE 282
Query: 218 F------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+ F + L I A+ ++P + V+YDV+HNIAK E H +DG
Sbjct: 283 YFSAMSAGANFAWSNRQLITWEIRQAWKAVIGSSP----LRVVYDVAHNIAKVETHEIDG 338
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
+ + LLVHRKG+TRAFP GQPV+I G+MGT S+VL G M+E+FGS
Sbjct: 339 QSRQLLVHRKGATRAFP-------------GQPVIIPGSMGTASFVLEGAPASMRESFGS 385
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
+CHGAGR +SR K++ + ++ +LE+ G+S++ S + EEAP +YK++ DVV T
Sbjct: 386 SCHGAGRRMSRKKAKHLVQGGQLRRELEAMGVSVQAGSLAGLAEEAPRAYKDIDDVVSTV 445
Query: 392 HAVGISKKTFKLRPVAVIKG 411
+ GI++K KL PV ++KG
Sbjct: 446 VSAGIARKVAKLVPVGIMKG 465
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 440 ARDLEEAL--EMGMDWSLREGYIWAEDKEHFERL-------AQSMFDHIPVGVGSKGIIP 490
A DL+E + G+ + + G E FE L A+ ++ +P GVG I
Sbjct: 81 AFDLDEGVISPGGIGYDINCGVRLLASSERFEELRDSIGELAREIYRQVPSGVGHGNQIT 140
Query: 491 MNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+++ L++ L G + GY ED H E G + AD SKVS AK+RG Q+
Sbjct: 141 FSSKQLDQVLRDGAPRMVEFGYGEPEDLGHIESGGVLDAADASKVSEHAKQRGRDQL 197
>gi|451981763|ref|ZP_21930109.1| conserved hypothetical protein UPF0027 [Nitrospina gracilis 3/211]
gi|451761029|emb|CCQ91374.1| conserved hypothetical protein UPF0027 [Nitrospina gracilis 3/211]
Length = 476
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/278 (41%), Positives = 172/278 (61%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V ++YD AA G+ + G + + IH GSRG GHQ+ T+ L M A +
Sbjct: 200 SGNHYLELQEVTDVYDAEAAGAFGLRE-GDIVISIHCGSRGLGHQIGTEFLKSMAMAAPK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQFNTTPDDLDMHV 253
I+ DR+LACA I S + + + + + +I + F ++ +
Sbjct: 259 HGIKLPDRELACAPIKSELGQQYLGAMRSAMNCAMANRQIITHLVRETFERVLPKAELDL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E+H++DGK KT+ VHRKG+TR+F P P IP ++ GQPVLIGGTMGT
Sbjct: 319 LYDVSHNTCKMEQHVIDGKTKTVFVHRKGATRSFGPGLPDIPEAFRSIGQPVLIGGTMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL GT++ M +FGS HGAGR +SR ++ + + V+++L ++GI IR S + V
Sbjct: 379 ASYVLCGTDRTMGLSFGSAVHGAGRQMSRRQATKKWKGRAVIDELANRGILIRSPSQRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+ VV+ H G+++K ++ P+ +KG
Sbjct: 439 AEEAPGAYKDVSRVVEAAHQAGLARKVARVEPIVCVKG 476
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L G + + + E LA +++ +IP GVGS+G I +N +++ LE G W++ G+
Sbjct: 102 TLHSGLVRDDIERVKETLADALYANIPAGVGSRGAISLNHDEMDAMLEGGAQWAVGRGWG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
+ED + EE G M AD VS +AKKR
Sbjct: 162 RSEDLKSIEEEGCMEGADAKCVSPQAKKR 190
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ E LA +++ +IP GVGS+G I +N +++ LE G W++ G+ +ED + E
Sbjct: 115 VKETLADALYANIPAGVGSRGAISLNHDEMDAMLEGGAQWAVGRGWGRSEDLKSIE 170
>gi|374855243|dbj|BAL58105.1| hypothetical conserved protein [uncultured prokaryote]
Length = 476
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 170/282 (60%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V+ IY + AA G+ + GQV V IH GSRG GHQ+ TD LV + KA R
Sbjct: 200 SGNHYCEVQYVERIYRRDAAEAFGLRE-GQVVVSIHCGSRGLGHQIGTDYLVLLAKAASR 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I+S + K + + + H++ AFA+ F
Sbjct: 259 LGIRLPDRELACAPIDSPEGKQYIGAMRAGINCALANRQIITHLVRQAFAQLFPQA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDVSHN K E+H+VDG+ + L +HRKG+TR+F P HP +P Y+ GQPV+IGG
Sbjct: 315 KLETLYDVSHNTCKLEQHVVDGQTRWLWIHRKGATRSFGPGHPELPERYRAVGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L GT + +F S HGAGR LSR ++ + D + +L +LE++GI +R
Sbjct: 375 SMGTASHILVGTAEAEARSFSSASHGAGRTLSRNQAVKQWDGRALLKELEARGIYVRSKG 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +V ++ + +L P+A +KG
Sbjct: 435 MRGVAEEAPGAYKDVDEVAKATEGARLADRVARLLPIACVKG 476
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA +F ++P GVG +G + + R+L+E L G W+L G+ ED + EE G M A
Sbjct: 119 LADLLFQYVPAGVGEEGNLKLTPRELDEVLAGGARWALEHGFGVPEDLAYVEERGCMAGA 178
Query: 531 DPSKVSMRAKKR 542
P VS AKKR
Sbjct: 179 VPENVSETAKKR 190
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA +F ++P GVG +G + + R+L+E L G W+L G+ ED + E
Sbjct: 119 LADLLFQYVPAGVGEEGNLKLTPRELDEVLAGGARWALEHGFGVPEDLAYVE 170
>gi|354613308|ref|ZP_09031233.1| protein of unknown function UPF0027 [Saccharomonospora
paurometabolica YIM 90007]
gi|353222350|gb|EHB86663.1| protein of unknown function UPF0027 [Saccharomonospora
paurometabolica YIM 90007]
Length = 496
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 180/309 (58%), Gaps = 26/309 (8%)
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
+G RG HQ+ + +GNH+ E+Q V+E++D A G+ GQVCVMIH GSRG GHQV
Sbjct: 193 AGERGL-HQLGSLGSGNHFLEVQAVEEVFDSDVARVFGLRR-GQVCVMIHCGSRGLGHQV 250
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFA 239
TD + +E+AM R I DRQLACA + S A+ A + H++ A
Sbjct: 251 CTDHVRVLEQAMPRHGIHVPDRQLACAPVESEPGHAYLGAMAAAANYALANRHMLGVAAD 310
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMV----------------DGKQKTLLVHRKGS 283
+ F D+ ++YDVSHN+AK E H V G + L VHRKG+
Sbjct: 311 RVFRAE-TGRDLRLVYDVSHNLAKLERHAVPDGAVTDGAGGTGRDDPGASRRLCVHRKGA 369
Query: 284 TRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA 343
TRA+PP HP +P D GQPVLI G+MGT SYVLTG F STCHGAGR LSR
Sbjct: 370 TRAWPPGHPDLPDDLGPVGQPVLIPGSMGTSSYVLTGVSG--NPAFESTCHGAGRVLSRH 427
Query: 344 KSRRNLDYQEVLNKLESQG-ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFK 402
++ + +D + + +LE Q +++R AS K ++EEAPE+YK+V +VV G+ +K +
Sbjct: 428 RALKTVDAKALRGQLERQAHVAVRAASRKGLVEEAPEAYKDVDEVVAVAEGAGLCRKVAR 487
Query: 403 LRPVAVIKG 411
L P+ V+KG
Sbjct: 488 LVPLGVVKG 496
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 449 MGMDWSLREGYIWAE-DKEHF----ERLAQSMFDHIPVGVGSKGIIPM-NARDLEEALEM 502
+G D S + AE D++ F + + ++ IP G G + P+ + R L+ L
Sbjct: 97 VGFDISCGVRLLTAEVDRDTFAPSRDAVMNALAREIPRGAGRGAVRPLAHRRGLDRILTG 156
Query: 503 GMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
G + +G+ A+D CE++GR+ ADP +V RA +RGL Q+
Sbjct: 157 GARELVEQGHGTADDLHRCEDHGRVAGADPHQVGDRAGERGLHQL 201
>gi|159038128|ref|YP_001537381.1| hypothetical protein Sare_2548 [Salinispora arenicola CNS-205]
gi|157916963|gb|ABV98390.1| protein of unknown function UPF0027 [Salinispora arenicola CNS-205]
Length = 472
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 173/282 (61%), Gaps = 14/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E+YD A+ G+ GQVCVMIH GSRG GHQ+ TD + +MEKAM+R
Sbjct: 199 SGNHFLEVQSVAEVYDHDVATTFGLWP-GQVCVMIHCGSRGLGHQICTDYVRRMEKAMRR 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+I+ DRQLACA + S + + A + L HV F + T +L
Sbjct: 258 YDIQVPDRQLACAPVESPEGHDYLGAMAAAANYARANRQLLTHVARVVFRR---VTGGNL 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D+ +YDVSHN AK E H VDG+++TL VHRKG+TRA PP HP +P D GQPVLI G
Sbjct: 315 DL--VYDVSHNQAKIETHGVDGERRTLCVHRKGATRALPPGHPDLPADLCDVGQPVLIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G F STCHGAGR SR ++ R Q+ +L ++ +++R AS
Sbjct: 373 SMGTASYVLAGVPGA--PAFASTCHGAGRVQSRKQAVRAERGQDPHRQLAARDVAVRGAS 430
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EE P +YK+++ VV+ G+ +K +L P+ V+KG
Sbjct: 431 RRGLAEEMPAAYKDISAVVEATEGAGLCRKVARLMPIGVVKG 472
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHCEE 523
+ E + + P G G + + R DL+ L G ++++ G+ D E CE+
Sbjct: 111 RPRLEAVMDGLGGATPRGAGRGAVWHVTGRSDLDGVLREGSRYAVQRGFGVGRDLERCED 170
Query: 524 YGRMLNADPSKVSMRAKKRGLPQV 547
+G + +ADP VS RA +RG QV
Sbjct: 171 HGALDDADPGAVSPRAVERGATQV 194
>gi|388455709|ref|ZP_10138004.1| hypothetical protein FdumT_04018 [Fluoribacter dumoffii Tex-KL]
Length = 476
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 170/282 (60%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY EIQ V +IY + A+ G+ + G V V IH GSRG GHQ+ TD L M + ++
Sbjct: 200 SGNHYLEIQEVRKIYCEKTATAFGLAE-GDVVVSIHCGSRGLGHQIGTDFLRSMLISAQQ 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I S +++ + ++ H + + F + T
Sbjct: 259 HGIQLTDRELACAPIRSAMGESYLGAMRAGINCALANREILTHFMREVFQDEMPGT---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDVSHN K E H V+GK L VHRKG+TRAF P HP + + GQPV+IGG
Sbjct: 315 QIKLIYDVSHNTCKEETHQVEGKTMRLFVHRKGATRAFGPGHPQLVNALKDVGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTE Q++FGS CHGAGRA+SR ++ + E++ +L QGI IR +S
Sbjct: 375 SMGTSSYVLVGTELSEQKSFGSACHGAGRAMSRHQATKKWRGSEIIAQLAQQGILIRSSS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAPE+YKNV VVD G++KK +L P+ +KG
Sbjct: 435 YRGVAEEAPEAYKNVDLVVDAAQQSGLTKKVARLVPIVCVKG 476
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
L G E + + E+LA ++F HIP GVGSK I + R +++ L G W++++GY
Sbjct: 103 LSTGLKREEFEPYKEQLADALFAHIPAGVGSKSRINLTMRQMDDMLLGGAVWAVKQGYGE 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKR 542
ED E E+ GR+ A P VS AKKR
Sbjct: 163 KEDLERIEDNGRVEGALPEHVSEHAKKR 190
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---RL 471
E+LA ++F HIP GVGSK I + R +++ L G W++++GY ED E E R+
Sbjct: 116 KEQLADALFAHIPAGVGSKSRINLTMRQMDDMLLGGAVWAVKQGYGEKEDLERIEDNGRV 175
Query: 472 AQSMFDHI 479
++ +H+
Sbjct: 176 EGALPEHV 183
>gi|255513775|gb|EET90040.1| protein of unknown function UPF0027 [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 481
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 173/282 (61%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+Q VD I D+ A G++ +V +M+HSGSRG+GHQV +D L + +
Sbjct: 201 AGNHFLEVQKVDRILDEKTAKAFGLQK-DEVVIMVHSGSRGYGHQVCSDYLRTLNDYLLA 259
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+NI D +L+ A I S + + A F T + I +F + F+ + D L
Sbjct: 260 NNITLVDPELSYAYIGSKEANDYLDAMKCAVNFAFTNRQIMTASIRKSFEEVFSKSADML 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK EEH VDGK+ L VHRKG+TRAF P +P + Y+ GQPVLI G
Sbjct: 320 GMEIVYDVAHNIAKLEEHEVDGKRMKLYVHRKGATRAFGPGNPEVTKIYREYGQPVLIPG 379
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ SYVL+G + M+ETFGS+CHG+GR +SR ++ R + + L L+ + I +RV S
Sbjct: 380 SMGSASYVLSGRAEAMRETFGSSCHGSGRVMSRHQAIREIPASKTLGDLDRKHIEVRVRS 439
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
KL+ EEA +YKNV DVV + IS +L PV V KG
Sbjct: 440 KKLISEEAEWAYKNVDDVVASIAGAKISNIVARLVPVGVAKG 481
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
+L +F ++P GVGSK + DLE+ G+ + + +G+ + +D E EE G M+
Sbjct: 119 KLMDRLFANVPSGVGSKIKLGFTKGDLEKVAVEGVGYIIGKGFGFPDDAERIEENGCMMG 178
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS AK RG+ Q+
Sbjct: 179 ANPDKVSKLAKDRGVQQL 196
>gi|269925495|ref|YP_003322118.1| hypothetical protein Tter_0374 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789155|gb|ACZ41296.1| protein of unknown function UPF0027 [Thermobaculum terrenum ATCC
BAA-798]
Length = 477
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 172/282 (60%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+V+++YD+ AA G+ + GQ+ V IH GSRG GHQ+ TD L+ + KA +R
Sbjct: 201 SGNHYLEVQVVEKVYDQKAAEAFGLWE-GQIVVSIHCGSRGLGHQIGTDYLLSLAKAAQR 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I S + + N + + H+ AF K T
Sbjct: 260 LKIDLPDRELACAPITSPEGHEYIGAMNAGINCALANRQILTHLTRQAFRKIIPGT---- 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDVSHN K E+H++DG+++ + +HRKG+TRA+ P HP IP Y+ GQPVLIGG
Sbjct: 316 KVETLYDVSHNTCKREKHVIDGRERFVYIHRKGATRAYGPGHPDIPQRYRNIGQPVLIGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G + Q + HGAGRALSR ++ + +E++ +L ++GI +R S
Sbjct: 376 SMGTGSYILVGVDTSEQRALSTASHGAGRALSRRQALKQWSGKEIIQQLAARGIIVRAHS 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP++YKNV V + G++ + LRP +KG
Sbjct: 436 SRGVAEEAPDAYKNVDLVAEATEYAGLANRVALLRPKICVKG 477
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 452 DWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREG 511
D SLR+ +AE RLA ++ IP GVG +G I ++ ++L+ LE G +W++REG
Sbjct: 107 DLSLRDLEPYAE------RLADELYKTIPAGVGEEGEIKLSPKELDRVLEGGAEWAVREG 160
Query: 512 YIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
Y ED E+ EE+GRM A P VS AKKR
Sbjct: 161 YGVPEDLEYIEEHGRMEGAVPEFVSKEAKKR 191
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
ERLA ++ IP GVG +G I ++ ++L+ LE G +W++REGY ED E+ E
Sbjct: 118 ERLADELYKTIPAGVGEEGEIKLSPKELDRVLEGGAEWAVREGYGVPEDLEYIE 171
>gi|307151093|ref|YP_003886477.1| hypothetical protein Cyan7822_1196 [Cyanothece sp. PCC 7822]
gi|306981321|gb|ADN13202.1| protein of unknown function UPF0027 [Cyanothece sp. PCC 7822]
Length = 483
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 187/293 (63%), Gaps = 10/293 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ T AGNH+ E+ +++EI+D+ AA MG+ + G + + IH GSRGFGHQ+ TD
Sbjct: 193 RGRG-QLGTLGAGNHFLEVDVIEEIFDQDAADIMGLYE-GCLAIQIHCGSRGFGHQICTD 250
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAF---AKQFNTTPDDLDMHVIYDA---F 238
+ + A+ I+ DR+L CA I+S + +A+ K + Y A F
Sbjct: 251 YVQDFQLAVINYGIQLPDRELVCAPISSKEGQAYLGAMKAAANFAFANRQTLAYHARQSF 310
Query: 239 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
+ F + + + +YD++HN+AK E+H ++G++ T+ VHRKG+TRAF P +P +Y
Sbjct: 311 EEVFGSQTGNHALRQVYDIAHNMAKIEQHNINGEEMTVCVHRKGATRAFGPGFEGLPPEY 370
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL 358
Q GQPVL+ G+MGT S++L GTE +FGS+CHGAGR +SR+K+++ + + + +L
Sbjct: 371 QEIGQPVLVPGSMGTESWILLGTEANDALSFGSSCHGAGRVMSRSKAKKEIRGERLRGEL 430
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
E +GI++R S + EEAP++YK+V VV+T GI+ K +LRPVAV+KG
Sbjct: 431 EKEGINVRAGSLPGLAEEAPQAYKDVNRVVETVSQAGIAHKVARLRPVAVVKG 483
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 422 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPV 481
M +P G+ S G + + L G+D+ K H LA +++ + P
Sbjct: 81 MAARVPDGIISPGAVGYDINCGVRVLASGIDYK--------SAKRHLPELATALYRNCPS 132
Query: 482 GVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKK 541
GVG KG +P++A +L++ G W+L +GY ED + EE+G + ADP+ VS RAK
Sbjct: 133 GVGGKGSVPLSAEELDKMCRQGAKWALEKGYATEEDLQRTEEFGCLEGADPNSVSKRAKD 192
Query: 542 RGLPQV 547
RG Q+
Sbjct: 193 RGRGQL 198
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERL 471
LA +++ + P GVG KG +P++A +L++ G W+L +GY ED + E
Sbjct: 122 LATALYRNCPSGVGGKGSVPLSAEELDKMCRQGAKWALEKGYATEEDLQRTEEF 175
>gi|158428616|pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
gi|158428617|pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
Length = 487
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/288 (43%), Positives = 177/288 (61%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG GHQV D + +
Sbjct: 206 QIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQDYVERF 264
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
K R IE D+QLA A I S + + + + + L H + +AF K
Sbjct: 265 LKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAXAAAANFAFANRQLIAHFVREAFEK-VG 323
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP +P +Y+ GQ
Sbjct: 324 FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQ 379
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G G SYVL GTEK + +FGS+CHGAGR SR ++++ + ++ +L +GI
Sbjct: 380 PVLVPGDXGRYSYVLAGTEKAXEVSFGSSCHGAGRKXSRHQAKKVARERNLVKELAERGI 439
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 440 LVRAATRATVDEEXPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 487
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+
Sbjct: 130 LADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPW 189
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG PQ+
Sbjct: 190 ANPDKVSERAFERGAPQI 207
>gi|397689534|ref|YP_006526788.1| hypothetical protein MROS_0532 [Melioribacter roseus P3M]
gi|395811026|gb|AFN73775.1| Hypothetical protein MROS_0532 [Melioribacter roseus P3M]
Length = 529
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 177/287 (61%), Gaps = 12/287 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ +V+EIYD+ A G+ GQ+ ++IH+GSRG G+QV D L + + K+
Sbjct: 244 SGNHFLEVDLVEEIYDEKIADIFGLFK-GQLVILIHTGSRGLGYQVCDDYLKLLVNSEKK 302
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
D+QLACA I S + K + A F + MH+ + + + +L
Sbjct: 303 FGFNLPDKQLACAPIKSVEGKDYLNAMKAAANFAWNNRQIIMHLAKKTLIETLSISQREL 362
Query: 250 DMHVIYDVSHNIAKTEEHMV---DGKQ--KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
++YDV HNIAK EEH++ DG + K + VHRKG+TRAFPP IP Y+ GQP
Sbjct: 363 GFELVYDVCHNIAKIEEHVITEKDGDRILKKVCVHRKGATRAFPPGSDYIPEKYREAGQP 422
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
VLI G MG S+VL G+E M ETFGS+CHGAGR SR ++ ++ ++++ +L+++GI+
Sbjct: 423 VLIPGDMGRYSFVLAGSESAMHETFGSSCHGAGRLQSRHQALKSAKGKDIIGELKNKGIT 482
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ K + EE P++YK+V++VV+ H GISKK KL+P VIKG
Sbjct: 483 VHAKGRKTIAEEMPDAYKDVSEVVEVMHNAGISKKVAKLKPAGVIKG 529
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 470 RLAQSMFDHIPVGVGSKGII-PMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ +++F +IP GVG+ G I ++ +++ + L G W++ G+ +D + EE GR+
Sbjct: 161 KFVENLFKNIPTGVGASGAIRKLSEKEIRKILVNGSRWAVENGFGSEDDLLYTEENGRLE 220
Query: 529 NADPSKVSMRAKKRGLPQ 546
ADP VS RA +RG Q
Sbjct: 221 GADPDAVSRRAIERGADQ 238
>gi|189218321|ref|YP_001938963.1| RtcB family protein [Methylacidiphilum infernorum V4]
gi|189185179|gb|ACD82364.1| RtcB family protein [Methylacidiphilum infernorum V4]
Length = 476
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 173/278 (62%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHYAE+Q+V +I+D+ A I +G + V IH GSRG GHQ+ TD L +M ++
Sbjct: 200 SGNHYAEVQVVGKIFDEALAKIFSIH-LGDIVVSIHCGSRGLGHQIGTDYLKEMVVCAQK 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I+ +R+LACA I S + + A + + +I K F+ +++ +
Sbjct: 259 LKIDLPERELACAPIASELGRRYLGAMRAGINCALANRQIITQLIRKVFSYFFPGIELPI 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E+H V+G K L VHRKG+TRAF P++P IP D++ GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKVEKHAVNGHFKELYVHRKGATRAFGPNNPEIPEDFREAGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GT + Q F S HGAGRA+SR+K+ + +E++ LE +GI I+ S + V
Sbjct: 379 HSYILAGTAQSEQLAFSSAVHGAGRAMSRSKALKEWKGKEIIRSLEQKGIIIKAVSERGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+DVV+ H ++K +L P+ IKG
Sbjct: 439 AEEAPLAYKDVSDVVEAAHKAELAKLVARLDPLICIKG 476
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
+LA+ +F IP GVGS G I ++ ++++ LE G W++ +GY +D EE G M
Sbjct: 118 KLAELLFKEIPAGVGSHGKIVLDKTEIDKMLEGGAKWAIAKGYGLQKDLYRIEEQGCMPG 177
Query: 530 ADPSKVSMRAKKR 542
ADP VS AK+R
Sbjct: 178 ADPQAVSHLAKER 190
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ +LA+ +F IP GVGS G I ++ ++++ LE G W++ +GY +D E
Sbjct: 115 IKNKLAELLFKEIPAGVGSHGKIVLDKTEIDKMLEGGAKWAIAKGYGLQKDLYRIE 170
>gi|344943309|ref|ZP_08782596.1| protein of unknown function UPF0027 [Methylobacter tundripaludum
SV96]
gi|344260596|gb|EGW20868.1| protein of unknown function UPF0027 [Methylobacter tundripaludum
SV96]
Length = 476
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 169/278 (60%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V EI+D A G+ + V + IH GSRG GHQ+ T+ L +M + +
Sbjct: 200 SGNHYLEVQRVAEIFDPVVAKIFGLH-IDDVVITIHCGSRGLGHQIGTEFLKEMAMSAAQ 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I DR+LACA +NS K + A + + +I + T + + +
Sbjct: 259 YRIVLPDRELACAPLNSPLGKKYLGAMRAGINCALANRQIITHLTRQAVATVFPGIHLGL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E HM+DG++K L VHRKG+TRAF P HP +P ++ TGQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKLEHHMIDGQKKALYVHRKGATRAFGPGHPDLPDVFKKTGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL GT++ Q F S CHGAGRA+SR ++ + + ++ +L +GI IR S + V
Sbjct: 379 SSYVLCGTQESEQRAFSSACHGAGRAMSRTQASKQWQGRTLVEELAERGIIIRSPSMRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+ VVD G+++K KL PV +KG
Sbjct: 439 AEEAPSAYKDVSAVVDIADRAGLARKVAKLEPVICVKG 476
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L G AE + H + LA ++ +P GVGS+G I +N + L G W+L +GY
Sbjct: 102 TLHTGLNIAELQPHKQALADALCRTVPAGVGSRGKIHLNHDRMHGMLTGGAKWALEQGYG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
A+D + EE+G M A+ VS RA++R
Sbjct: 162 EAQDLDRIEEHGCMAGAEAHYVSPRARER 190
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ LA ++ +P GVGS+G I +N + L G W+L +GY A+D + E
Sbjct: 116 KQALADALCRTVPAGVGSRGKIHLNHDRMHGMLTGGAKWALEQGYGEAQDLDRIE 170
>gi|289164059|ref|YP_003454197.1| hypothetical protein LLO_0715 [Legionella longbeachae NSW150]
gi|288857232|emb|CBJ11057.1| putative unknown proteins [Legionella longbeachae NSW150]
Length = 476
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 166/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY EIQ V +IY A+ G+ +G V V IH GSRG GHQ+ TD L M ++
Sbjct: 200 SGNHYLEIQEVKKIYCDKTAAAFGLA-LGDVVVSIHCGSRGLGHQIGTDFLRSMLIDAQQ 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I S + + + ++ H + + F + T
Sbjct: 259 RGIQLIDRELACAPIRSPMGERYLGAMRAGINCALANREIITHFMREVFQDELPGT---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDVSHN K E H +DGK K L VHRKG+TRAF P HP + ++ GQPV+IGG
Sbjct: 315 KIKLIYDVSHNTCKEETHQIDGKSKRLFVHRKGATRAFGPGHPQLATSFRHVGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GT ++FGS CHGAGRA+SR ++ + QE++ L QGI IR +S
Sbjct: 375 SMGTASYVLAGTANAENKSFGSACHGAGRAMSRHQATKQWQGQEIIKHLAQQGILIRSSS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YKNV VVD G++KK +L P+ +KG
Sbjct: 435 YRGVAEEAPGAYKNVDLVVDAAQDSGLTKKVARLIPIVCVKG 476
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 463 EDKEHF-ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 521
ED E + ERLA ++F HIP GVGSK I + + +++ L G W++++GY ED EH
Sbjct: 110 EDFEPYKERLADALFTHIPAGVGSKSRINLTMKQMDDMLRGGAVWAVKQGYGDKEDLEHI 169
Query: 522 EEYGRMLNADPSKVSMRAKKR 542
E+YGR+ A P VS AKKR
Sbjct: 170 EDYGRVDGALPEHVSEHAKKR 190
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---RL 471
ERLA ++F HIP GVGSK I + + +++ L G W++++GY ED EH E R+
Sbjct: 116 KERLADALFTHIPAGVGSKSRINLTMKQMDDMLRGGAVWAVKQGYGDKEDLEHIEDYGRV 175
Query: 472 AQSMFDHI 479
++ +H+
Sbjct: 176 DGALPEHV 183
>gi|270157560|ref|ZP_06186217.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|269989585|gb|EEZ95839.1| conserved hypothetical protein [Legionella longbeachae D-4968]
Length = 487
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 166/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY EIQ V +IY A+ G+ +G V V IH GSRG GHQ+ TD L M ++
Sbjct: 211 SGNHYLEIQEVKKIYCDKTAAAFGLA-LGDVVVSIHCGSRGLGHQIGTDFLRSMLIDAQQ 269
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I S + + + ++ H + + F + T
Sbjct: 270 RGIQLIDRELACAPIRSPMGERYLGAMRAGINCALANREIITHFMREVFQDELPGT---- 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDVSHN K E H +DGK K L VHRKG+TRAF P HP + ++ GQPV+IGG
Sbjct: 326 KIKLIYDVSHNTCKEETHQIDGKSKRLFVHRKGATRAFGPGHPQLATSFRHVGQPVIIGG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GT ++FGS CHGAGRA+SR ++ + QE++ L QGI IR +S
Sbjct: 386 SMGTASYVLAGTANAENKSFGSACHGAGRAMSRHQATKQWQGQEIIKHLAQQGILIRSSS 445
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YKNV VVD G++KK +L P+ +KG
Sbjct: 446 YRGVAEEAPGAYKNVDLVVDAAQDSGLTKKVARLIPIVCVKG 487
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 463 EDKEHF-ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 521
ED E + ERLA ++F HIP GVGSK I + + +++ L G W++++GY ED EH
Sbjct: 121 EDFEPYKERLADALFTHIPAGVGSKSRINLTMKQMDDMLRGGAVWAVKQGYGDKEDLEHI 180
Query: 522 EEYGRMLNADPSKVSMRAKKR 542
E+YGR+ A P VS AKKR
Sbjct: 181 EDYGRVDGALPEHVSEHAKKR 201
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---RL 471
ERLA ++F HIP GVGSK I + + +++ L G W++++GY ED EH E R+
Sbjct: 127 KERLADALFTHIPAGVGSKSRINLTMKQMDDMLRGGAVWAVKQGYGDKEDLEHIEDYGRV 186
Query: 472 AQSMFDHI 479
++ +H+
Sbjct: 187 DGALPEHV 194
>gi|430745856|ref|YP_007204985.1| hypothetical protein Sinac_5138 [Singulisphaera acidiphila DSM
18658]
gi|430017576|gb|AGA29290.1| hypothetical protein Sinac_5138 [Singulisphaera acidiphila DSM
18658]
Length = 489
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/283 (45%), Positives = 173/283 (61%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD I+D+ AA MG+ + GQV V+IHSGSRG G+QV D L + A KR
Sbjct: 208 SGNHFLEVQVVDRIHDQEAADVMGLRE-GQVTVLIHSGSRGLGYQVCDDYLGVFKGAPKR 266
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
D QLACA + S + +++ A + L H + FA+ T + L
Sbjct: 267 YGFSLPDPQLACAPVRSPEGQSYLGAMRAAANYAWCNRQLLTHQAREVFARVLGTPWESL 326
Query: 250 DMHVIYDVSHNIAKTEEHMVDGK-QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
M ++YDV+HNIAK E H V G K + VHRKG+TRAFPP HP IP +Y GQPV+I
Sbjct: 327 GMDLVYDVAHNIAKFEHHQVGGGISKQVCVHRKGATRAFPPGHPEIPDEYHKIGQPVIIP 386
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT S+VL G M++TFG+TCHGAGR +SR + + + + +L++ GI R
Sbjct: 387 GSMGTASWVLAGLPGSMEQTFGTTCHGAGRMMSRTAAIKLAGDRRIDKELDAIGIIARAR 446
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + EE P +YK+V VV+ GISKK +LRPV VIKG
Sbjct: 447 GHKGLAEEQPAAYKDVDQVVEVVDKAGISKKVARLRPVGVIKG 489
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR W E K +L +F IP GVG +G + L +E G + + +G+
Sbjct: 111 LRTDLAWDEVKPRIRQLVDELFREIPTGVGQRGRFLFDKPKLSRLMEQGSAYVVEQGWGT 170
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ 546
D E GR+ ADP +VS RA RG Q
Sbjct: 171 VRDLGFTEAGGRLDGADPDRVSDRAFTRGYDQ 202
>gi|269126262|ref|YP_003299632.1| hypothetical protein Tcur_2027 [Thermomonospora curvata DSM 43183]
gi|268311220|gb|ACY97594.1| protein of unknown function UPF0027 [Thermomonospora curvata DSM
43183]
Length = 475
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 175/288 (60%), Gaps = 7/288 (2%)
Query: 127 RGFGHQVAT-AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDA 185
RG G + +GNH+ E+Q V E++D+ AA G+ GQ+CVMIHSGSRG GHQ+ TD
Sbjct: 192 RGLGQLGSLGSGNHFLEVQAVSEVHDEIAAKAFGLGP-GQICVMIHSGSRGLGHQICTDH 250
Query: 186 LVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQFN 243
+ MEKAM+R +I DRQLACA S + +A+ + + ++ +A + F
Sbjct: 251 VRAMEKAMRRHSISVPDRQLACAPAGSPEGRAYLAAMAAAANYGRANRQLLTEAARRAFR 310
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
D+ ++YDVSHN+AK E H VDG + L VHRKG+T A PP HP +P D GQ
Sbjct: 311 GVCGT-DLELVYDVSHNLAKIETHRVDGTARRLCVHRKGATLALPPRHPDLPEDLADVGQ 369
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVLI G+MGT SYVL G F STCHGAGR SR ++ + + +E+ ++LE GI
Sbjct: 370 PVLIPGSMGTASYVLAGVAA--NPAFNSTCHGAGRLHSRHQAAKAVSGRELRDRLEGAGI 427
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++R AS + + EE PE+YK+V VV G+ + +L P+ V+KG
Sbjct: 428 AVRGASWRGLAEETPEAYKDVDAVVAAAEGAGLCRTVARLVPLGVVKG 475
>gi|292491945|ref|YP_003527384.1| hypothetical protein Nhal_1884 [Nitrosococcus halophilus Nc4]
gi|291580540|gb|ADE14997.1| protein of unknown function UPF0027 [Nitrosococcus halophilus Nc4]
Length = 476
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 173/278 (62%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V E+YD A+ G+ G + V IH GSRG GHQ+ T+ L M A R
Sbjct: 200 SGNHYLEVQHVVEVYDPETAAAFGLYG-GDMVVTIHCGSRGLGHQIGTEFLKDMAIAAPR 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I DR+LACA I+S + + A + + ++ + F + ++ +
Sbjct: 259 YGITLPDRELACAPIHSPLGETYLGAMRAGINCALANRQILTHLTRQVFAEILPEANLTL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K EEH++DG++K L VHRKG+TRA+ P HP +P + GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKVEEHVIDGQRKRLFVHRKGATRAYGPGHPDLPEALREVGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
S++L GT++ F S CHGAGR++SR +++R +EV+++L +GI IR AS + V
Sbjct: 379 SSHILVGTKETEALAFSSACHGAGRSMSRHEAKRRWYGREVVDRLAKRGILIRSASYRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP++YK+V VVD H G+++K +L P+ IKG
Sbjct: 439 AEEAPDAYKDVDAVVDAAHESGLARKVARLEPLICIKG 476
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++ IP GVGS+G I +N R++ L G W++ GY ED EE G M A
Sbjct: 119 LADRLYHQIPAGVGSRGAIHLNDREMNAMLAGGARWAVERGYGRPEDLARIEEQGCMPGA 178
Query: 531 DPSKVSMRAKKR 542
P +VS +AKKR
Sbjct: 179 VPDEVSAKAKKR 190
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++ IP GVGS+G I +N R++ L G W++ GY ED E
Sbjct: 119 LADRLYHQIPAGVGSRGAIHLNDREMNAMLAGGARWAVERGYGRPEDLARIE 170
>gi|167967275|ref|ZP_02549552.1| hypothetical protein MtubH3_04247 [Mycobacterium tuberculosis
H37Ra]
Length = 432
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 179/292 (61%), Gaps = 15/292 (5%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 ---NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
TP +H++Y VSH++A E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTP----LHLLYHVSHHLANIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELA 322
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L
Sbjct: 323 AVGQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLA 380
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 381 KRGIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|396080817|gb|AFN82438.1| RtcB-like protein [Encephalitozoon romaleae SJ-2008]
Length = 477
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 176/293 (60%), Gaps = 20/293 (6%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG +Q+ T +GNHY E+Q VDE+YD A MGI Q+ +MIHSGSRG GH++ D
Sbjct: 197 RGL-NQLGTLGSGNHYLEVQYVDEVYDTEKAEVMGIRK-KQIVLMIHSGSRGLGHRICHD 254
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAF 238
+L++M + + T QLAC+ NS +++ + A F + AF
Sbjct: 255 SLMRMAR------MSTGYGQLACSPYNSKESQEYLLSMGCAANFAFVNRAMITKKARQAF 308
Query: 239 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
+ F DL IYDV HNIAK E H ++G + +VHRKG++RAFPP H IP Y
Sbjct: 309 ERVFPEARLDL----IYDVCHNIAKIESHKINGMEYDAIVHRKGASRAFPPGHRDIPWKY 364
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL 358
+ GQPV++GG+MGT SY+L G+EK M+ +FGS+CHGAGR LSR KS+ ++ V + L
Sbjct: 365 KEMGQPVVVGGSMGTYSYILCGSEKSMELSFGSSCHGAGRVLSRGKSKDLFTHKNVCDLL 424
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q I R S ++EE+P YK++ VVD +G++KK +L+P VIKG
Sbjct: 425 RDQDIVFRCPSDPGMVEESPGCYKDINRVVDLSDRIGLTKKVCRLKPCLVIKG 477
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
KE E LA +F IP G+GS ++ L+ L+ G+D+ L+ I ED E+CE
Sbjct: 121 KEKAESLADELFGIIPTGMGSDKRSNVDLGALDSILDQGLDYLLKLKEIPDEDAEYCESN 180
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM D V +AK RGL Q+
Sbjct: 181 GRM-TGDSRLVGQKAKGRGLNQL 202
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M G +V++ L K ++EEL P +G QI++V +LPG++G +GLPD+H
Sbjct: 21 MRTSGTIYVDEELRKPLIEELNAGVTPSSIG-------QISDVCSLPGLIGNVIGLPDIH 73
Query: 61 S 61
+
Sbjct: 74 T 74
>gi|348169959|ref|ZP_08876853.1| hypothetical protein SspiN1_05450 [Saccharopolyspora spinosa NRRL
18395]
Length = 470
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/290 (43%), Positives = 176/290 (60%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G QV + +GNH+ E+Q V EIYD+ A G+ + Q+CVMIH GSRG GHQ+ TD
Sbjct: 187 RGLG-QVGSLGSGNHFLEVQAVAEIYDEGVAGAFGLR-LDQLCVMIHCGSRGLGHQICTD 244
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQF 242
+ M+++M + DRQLAC ++S +A+ A + HV+ A +
Sbjct: 245 HVRSMDESMADYGLTVPDRQLACTPVDSPAGRAYLGAMAAAANYARANRHVLGVAAGEVL 304
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
T LD+ +YD+SHN+AK E H V+G+++TL VHRKG+TRA PP HP +P +
Sbjct: 305 RKATGCGLDL--VYDISHNLAKIETHEVEGQRRTLCVHRKGATRALPPGHPELPPGLRAA 362
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI G+MGT SYVLTG G + F STCHGAGR SR ++ R D + + LE
Sbjct: 363 GQPVLIPGSMGTASYVLTGVPTG--DAFFSTCHGAGRTQSRHQAIRTTDPRRLRRDLEHD 420
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R +S + + EEAP +YK+V VV G+ ++ +L P+ V+KG
Sbjct: 421 GIVVRGSSARGLAEEAPTAYKDVDAVVAVAEGAGLCRRIARLVPLGVVKG 470
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 464 DKEHFERLAQSMFDHI----PVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKE 519
D+ F R+A+ + D + P G G + ++ L+ LE G +++ G D E
Sbjct: 105 DRSDFHRVAERIMDGLSRATPRGAGRGAVWELHREGLDRLLEEGCHYAVARGRGTPRDLE 164
Query: 520 HCEEYGRMLNADPSKVSMRAKKRGLPQV 547
CE+ G + +A+P +VS RA+ RGL QV
Sbjct: 165 RCEDGGAVADAEPGRVSARARDRGLGQV 192
>gi|53802637|ref|YP_112731.1| hypothetical protein MCA0195 [Methylococcus capsulatus str. Bath]
gi|53756398|gb|AAU90689.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 476
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 168/282 (59%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V EI+D +A GI + G V V IH GSRG GHQ+ T+ L M+ A K+
Sbjct: 200 SGNHYLEVQEVTEIFDAGSAQTFGISE-GDVVVSIHCGSRGLGHQIGTEYLRLMQGAAKQ 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S + + + + H+ FA+
Sbjct: 259 HGIALPDRELACAPIESEVGQDYLGAMRAAINCALANRQILTHLTRQVFARVLPAA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDVSHN K EEH+V+GK++ L VHRKG+TRA+ P HP +P + TGQPVLIGG
Sbjct: 315 RLELLYDVSHNTCKFEEHLVEGKRRRLHVHRKGATRAYGPGHPDLPPAFAETGQPVLIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT +F S CHGAGR++SR ++ R +EV+++L +GI IR S
Sbjct: 375 SMGTASYILAGTSGSETLSFASACHGAGRSMSRHQATRTWQGREVIDQLAERGILIRSPS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V VV + G+++ +L P+ IKG
Sbjct: 435 YRGVAEEAPGAYKDVHAVVQSSDRAGLARLVARLEPIICIKG 476
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA +++ IPVG+GS G I ++A+ L+ L+ G W++ +G+ A D EE+GRM A
Sbjct: 119 LADTLYADIPVGLGSHGKIRLDAQGLDAMLKGGAQWAVEQGWGEARDLTRIEEHGRMEGA 178
Query: 531 DPSKVSMRAKKR 542
P VS RAK+R
Sbjct: 179 RPENVSARAKER 190
>gi|116750152|ref|YP_846839.1| hypothetical protein Sfum_2726 [Syntrophobacter fumaroxidans MPOB]
gi|116699216|gb|ABK18404.1| protein of unknown function UPF0027 [Syntrophobacter fumaroxidans
MPOB]
Length = 493
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 179/296 (60%), Gaps = 13/296 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ Q+ T +GNHY EIQ+V + I+D A GI QV VM H GSRGFGHQVA
Sbjct: 200 RGY-KQIGTLGSGNHYLEIQVVKPENIFDPQLARAFGITLPEQVAVMFHCGSRGFGHQVA 258
Query: 183 TDALVQMEKAM-KRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
TD L K M K+ I DR+LACA NS + + + A + + +H +
Sbjct: 259 TDYLQLFLKVMEKKYGIRILDRELACAPFNSPEGRDYFAAMKCAVNMSFANRQVILHRVR 318
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F+ F P ++ +H +YDV+HN AK EEH++DG+ + LLVHRKG+TRAF P +P
Sbjct: 319 EVFSDVFGRDPAEMGLHQVYDVAHNTAKLEEHILDGQPRQLLVHRKGATRAFGPGAHALP 378
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ TGQPV++GG+M T SY+L G E G Q TF ST HG+GR +SR +++R +++
Sbjct: 379 PVYRNTGQPVIVGGSMETGSYLLAGVETGSQ-TFFSTAHGSGRTMSRKQAKRMFQGKQLQ 437
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+E +GI +R S + EEA +YK++ +VV GIS++ +L PV +KG
Sbjct: 438 RDMEGRGIYVRTVSFSGLAEEAGPAYKDIDEVVGATELAGISRRVARLIPVGNVKG 493
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E +E L +F+ +P GVGS G++ ++ + +E G W +R GY W ED E
Sbjct: 119 FGEVRERLRDLVDRLFERVPAGVGSTGLLKISQDEFRRVVEEGARWCVRNGYGWDEDLER 178
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
EE+G + AD SK+S +A +RG Q+
Sbjct: 179 TEEFGCISGADASKISNKAVERGYKQI 205
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLA 472
L +F+ +P GVGS G++ ++ + +E G W +R GY W ED E E
Sbjct: 129 LVDRLFERVPAGVGSTGLLKISQDEFRRVVEEGARWCVRNGYGWDEDLERTEEFG 183
>gi|428212870|ref|YP_007086014.1| hypothetical protein Oscil6304_2475 [Oscillatoria acuminata PCC
6304]
gi|428001251|gb|AFY82094.1| hypothetical protein Oscil6304_2475 [Oscillatoria acuminata PCC
6304]
Length = 483
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 175/295 (59%), Gaps = 18/295 (6%)
Query: 131 HQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
+Q+ T +GNHY EIQ+ + I +K A GI QV VM H GSRGFGHQVATD L
Sbjct: 193 NQIGTLGSGNHYLEIQVARPENIVNKELAEAFGITIPNQVVVMFHCGSRGFGHQVATDYL 252
Query: 187 VQMEKAMK-RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDM---------HVIYD 236
K M+ + I DR+LACA NS + + + F L+M H I +
Sbjct: 253 QVFLKVMESKYGINILDRELACAPFNSPEGQDY---FAAMKCGLNMSFANRQVILHRIRE 309
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
F+ F + + L MH +YDVSHN AK EEH+VDGK K+LLVHRKGSTRAF P IP
Sbjct: 310 VFSDVFGKSAEALGMHQVYDVSHNTAKLEEHIVDGKAKSLLVHRKGSTRAFGPGMEGIPD 369
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
Y+ GQPV++GG+M T SY+L G G Q F ST HG+GR +SR K+R+ + +++
Sbjct: 370 RYKPYGQPVILGGSMETGSYLLAGVSTGAQSFF-STAHGSGRTMSRTKARKQWNGEQLQK 428
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ QGI IR S + + EEA +YK+V VV G+SK+ +L P+ +KG
Sbjct: 429 DMQKQGIYIRTTSWRGLAEEAGGAYKDVDAVVKATELAGLSKRVVRLVPIGNVKG 483
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E K ++L +++ +P GVGSKG + ++ + + ++ G W + +GY W ED E E
Sbjct: 111 EVKPQIKKLIDKLYERVPAGVGSKGFVKVSRNEFRQVVQEGAKWCINQGYGWEEDLELTE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G + A SK+S +A RG Q+
Sbjct: 171 ENGCIAGAYASKISDKAIDRGCNQI 195
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
++L +++ +P GVGSKG + ++ + + ++ G W + +GY W ED E E
Sbjct: 117 KKLIDKLYERVPAGVGSKGFVKVSRNEFRQVVQEGAKWCINQGYGWEEDLELTE 170
>gi|374635420|ref|ZP_09707019.1| protein of unknown function UPF0027 [Methanotorris formicicus
Mc-S-70]
gi|373562293|gb|EHP88508.1| protein of unknown function UPF0027 [Methanotorris formicicus
Mc-S-70]
Length = 1930
Score = 226 bits (575), Expect = 3e-56, Method: Composition-based stats.
Identities = 121/250 (48%), Positives = 169/250 (67%), Gaps = 6/250 (2%)
Query: 168 VMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAK------Q 221
V+ ++GSRG GHQ+ D + MEKA K+ I+ DRQLACA I S + + K
Sbjct: 1681 VVSNTGSRGLGHQICADYIRVMEKAAKKYGIKLPDRQLACAPIESEEGIEYYKAMSCGAN 1740
Query: 222 FNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 281
+ T + H + ++F K F T+ +DL+M++IYDV+HNIAK EEH++DGK+K ++VHRK
Sbjct: 1741 YAWTNRQMITHWVRESFEKVFKTSAEDLEMNIIYDVAHNIAKMEEHVIDGKKKKVVVHRK 1800
Query: 282 GSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALS 341
G+TRAF P LIP +Y+ GQPV+I G MGT SY++ GTEK M+ETFGST HGAGR LS
Sbjct: 1801 GATRAFGPGSELIPKEYRRVGQPVIIPGDMGTASYLMHGTEKAMEETFGSTAHGAGRTLS 1860
Query: 342 RAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTF 401
RAK+ + +E+ KLE +GI + S ++ EE PE+YK++ V D CH GIS K
Sbjct: 1861 RAKALKLWKGKEIKEKLEKEGIIVMADSRAVIAEECPEAYKSIDLVADVCHKSGISLKVS 1920
Query: 402 KLRPVAVIKG 411
+++P+ V+KG
Sbjct: 1921 RMKPMGVVKG 1930
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R E K + L +F ++P G+GSKG I + ++++ LE G W++ EGY W
Sbjct: 1084 IRTNLTKEEVKPKIKELVSEIFKNVPSGLGSKGKIRITKNEIDDVLEEGAKWAINEGYGW 1143
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED + EE+G M +AD S VS AKKRGLPQ+
Sbjct: 1144 EEDIKFIEEHGYMKDADASLVSDSAKKRGLPQL 1176
Score = 44.3 bits (103), Expect = 0.19, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
+LG+GNH+ EIQ VD+++D+ G+E+ QV VM+H ++ T + +I+
Sbjct: 1178 SLGSGNHFLEIQYVDKVFDEETGEIFGVEE-NQVVVMVHCLPE--SSKILTEYGYCIKIK 1234
Query: 145 IVDEIYDK 152
++ YDK
Sbjct: 1235 DLENCYDK 1242
>gi|357403645|ref|YP_004915569.1| hypothetical protein MEALZ_0270 [Methylomicrobium alcaliphilum 20Z]
gi|351716310|emb|CCE21970.1| conserved protein of unknown function [Methylomicrobium
alcaliphilum 20Z]
Length = 476
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 170/278 (61%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V EI+D+ A ++ + + + IH GSRG GHQ+ T+ L M A +
Sbjct: 200 SGNHYLEVQRVVEIFDQEVAEAYRLK-LDAIVISIHCGSRGLGHQIGTEFLKDMALAASQ 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
+I DR+LACA +NS K + A + + +I + N + + +
Sbjct: 259 YHITLPDRELACAPLNSPLGKRYLGAMRAGINCALANRQIITHLTRQAMNEIFPGISIDL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E H+V G +T+ VHRKG+TRAF P H +P +YQ GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKEERHIVAGSAQTVFVHRKGATRAFGPGHADLPTEYQSVGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GT++ Q +F S CHGAGRA+SR ++ + + ++++L QGI IR S + V
Sbjct: 379 SSYILCGTKQAEQRSFSSACHGAGRAMSRRQATKQWHGRALVDQLAEQGILIRSPSLRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+ VVD+ G++KK +L PV IKG
Sbjct: 439 AEEAPAAYKDVSAVVDSADKAGLAKKVARLEPVICIKG 476
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++ +P GVGS+G+I +N ++ L G W++ +G+ A D E EE GR+ A
Sbjct: 119 LADELYRSVPAGVGSRGLIHLNHDEMRAMLTGGAQWAVDQGFGEARDLEFTEERGRVDGA 178
Query: 531 DPSKVSMRAKKR 542
+P VS RA++R
Sbjct: 179 EPRDVSPRARER 190
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++ +P GVGS+G+I +N ++ L G W++ +G+ A D E E
Sbjct: 119 LADELYRSVPAGVGSRGLIHLNHDEMRAMLTGGAQWAVDQGFGEARDLEFTE 170
>gi|357632947|ref|ZP_09130825.1| protein of unknown function UPF0027 [Desulfovibrio sp. FW1012B]
gi|357581501|gb|EHJ46834.1| protein of unknown function UPF0027 [Desulfovibrio sp. FW1012B]
Length = 476
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 166/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V++I+D AS G+ GQV V IH GSRG GHQVAT+ + M A
Sbjct: 200 SGNHYLEVQHVEKIFDSRTASAYGLRP-GQVVVSIHCGSRGLGHQVATEHMAAMLAAAPG 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D +LA A I S + + + H++ + FA F
Sbjct: 259 HGLTVADPELAFAPIESPAGVRYLGAMRAAINCALAGRQIITHLVREVFAALF----PGC 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDVSHN K E H V KTL VHRKG+TRA P HP +P ++ GQPV++GG
Sbjct: 315 RLALLYDVSHNTCKVERHAVGKSVKTLHVHRKGATRALGPGHPDLPETFREVGQPVIVGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL+GTE +F S CHGAGRA+SR ++ + + V+ L QGI+IR +
Sbjct: 375 SMGTSSYVLSGTEASEALSFASACHGAGRAMSRKQAAKRFSAKGVVAALAGQGITIRTHT 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK++ +V T HA+G++ KT +LRP+A IKG
Sbjct: 435 LRGVAEEAPGAYKDIEEVAQTTHALGLAAKTARLRPLACIKG 476
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA ++D +P G+G+ G + ++ RD++ L G W++REG+ D CEE G M
Sbjct: 117 ESLADRLYDAVPAGLGAGGRLRLSDRDMDRMLAGGAAWAVREGFGQTGDLPRCEEGGTMP 176
Query: 529 NADPSKVSMRAKKR 542
ADP+ VS +A++R
Sbjct: 177 GADPAGVSAKARER 190
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E LA ++D +P G+G+ G + ++ RD++ L G W++REG+ D E
Sbjct: 115 VRESLADRLYDAVPAGLGAGGRLRLSDRDMDRMLAGGAAWAVREGFGQTGDLPRCEE-GG 173
Query: 474 SMFDHIPVGVGSK 486
+M P GV +K
Sbjct: 174 TMPGADPAGVSAK 186
>gi|167577969|ref|ZP_02370843.1| hypothetical protein BthaT_07521 [Burkholderia thailandensis TXDOH]
Length = 477
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 169/283 (59%), Gaps = 12/283 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q +++IYD A + G++ GQV V IH GSRG GHQ+ T+ L M A K
Sbjct: 200 SGNHYLEVQEIEDIYDPACAQRYGLQR-GQVVVTIHCGSRGLGHQIGTEFLKDMVIAAKS 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S+ + + + + H+ + FAK
Sbjct: 259 YGIALPDRELACAPILSDLGERYLGAMRAAINCALANRQVLTHLTREVFAKVLPAA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + YDVSHN K E+H++DG+++ L VHRKG+TRAF P HP +P + GQPVLIGG
Sbjct: 315 QLTLFYDVSHNTCKVEDHVIDGRRRQLYVHRKGATRAFGPGHPALPDALRDAGQPVLIGG 374
Query: 310 TMGTCSYVLTGTEK-GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
+MGT SYVL G G + FGS CHGAGRA+SR + R + ++++L ++GI IR
Sbjct: 375 SMGTASYVLAGANAPGGERAFGSACHGAGRAMSRFAASRRWRGRALVDELAARGIVIRSL 434
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + + EEAP +YK+V VVD G+++K +L P+ IKG
Sbjct: 435 SDRGIAEEAPGAYKDVGAVVDAAAEAGLARKVARLAPLVCIKG 477
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP GVGS G + ++A ++ L G W++ +GY D E EE G + +A
Sbjct: 119 LADALFAHIPAGVGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIEEGGMVRHA 178
Query: 531 DPSKVSMRAKKR 542
PS VS AK+R
Sbjct: 179 KPSMVSALAKRR 190
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ + LA ++F HIP GVGS G + ++A ++ L G W++ +GY D E E
Sbjct: 115 VKKTLADALFAHIPAGVGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIE 170
>gi|320449113|ref|YP_004201209.1| hypothetical protein TSC_c00070 [Thermus scotoductus SA-01]
gi|320149282|gb|ADW20660.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 476
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 177/288 (61%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VD+IYD+ AA G+ Q+ V+IH+GSRG GHQV D + +
Sbjct: 195 QIGTLGSGNHFLEVQYVDQIYDEEAAEAFGLFP-NQITVLIHTGSRGLGHQVCQDYVERF 253
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
K R IE D+QLA A I S + + + + + L H + +AF +
Sbjct: 254 LKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFTFANRQLIAHFVREAF-EAVG 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
P + + V+YD++HN AK EEH + +LVHRKG+TRAF P +P IP++Y+ GQ
Sbjct: 313 FPPREHGLRVLYDLAHNNAKFEEH----GGRRVLVHRKGATRAFGPGNPEIPLEYRHVGQ 368
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTEK M +FGS+CHGAGR +SR +++R + ++ +L +GI
Sbjct: 369 PVLVPGDMGRYSYVLAGTEKAMAVSFGSSCHGAGRKMSRHQAKRVAKERNLVKELAERGI 428
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 429 LVRAATKATVDEEMPEAYKDVSVVVEAVQGAGIGKKVARLRPLIVVKG 476
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ IP GVGS + + + ++L+E L G W +R G+ + ED E GR+
Sbjct: 119 LADTLYRLIPSGVGSERKDVRFSKKELKEILREGAGWLIRRGFGYPEDLHFIESEGRLPW 178
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG PQ+
Sbjct: 179 ANPDKVSERAFERGAPQI 196
>gi|39996784|ref|NP_952735.1| hypothetical protein GSU1684 [Geobacter sulfurreducens PCA]
gi|409912203|ref|YP_006890668.1| hypothetical protein KN400_1706 [Geobacter sulfurreducens KN400]
gi|39983672|gb|AAR35062.1| protein of unknown function UPF0027 [Geobacter sulfurreducens PCA]
gi|298505795|gb|ADI84518.1| protein of unknown function UPF0027 [Geobacter sulfurreducens
KN400]
Length = 485
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/296 (41%), Positives = 181/296 (61%), Gaps = 13/296 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ +Q+ T +GNHY E+Q+ + I+D+ A GI QV +M H GSRGFGHQVA
Sbjct: 192 RGY-NQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRGFGHQVA 250
Query: 183 TDALVQMEKAM-KRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD L M K+ I TNDR+LACA S + + + + + +H I
Sbjct: 251 TDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F+ F P DL M ++YDV+HN AK E H+VDGK++ LLVHRKG+TRAF P IP
Sbjct: 311 EVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATRAFGPGMEGIP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ TGQPV+IGG+M T SY+L G + G +TF +T HG+GR +SR ++++ + Q++
Sbjct: 371 ARYRETGQPVIIGGSMETGSYLLAG-DPGGGDTFFTTAHGSGRTMSRHQAKKLIKGQKLQ 429
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+E +GI +R AS + EEA ++YKN+ DV + +S++ +L P+ +KG
Sbjct: 430 RDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPIGNVKG 485
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E K L ++F +P GVGS G + ++ + E G W L+ GY W ED E
Sbjct: 111 YEEVKPRLRELVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEM 170
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
EE+G AD +KVS RA RG Q+
Sbjct: 171 TEEHGCFTGADATKVSQRAVDRGYNQI 197
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVGS G + ++ + E G W L+ GY W ED E E
Sbjct: 121 LVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTE 172
>gi|384438695|ref|YP_005653419.1| hypothetical protein [Thermus sp. CCB_US3_UF1]
gi|359289828|gb|AEV15345.1| hypothetical protein TCCBUS3UF1_2960 [Thermus sp. CCB_US3_UF1]
Length = 476
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 174/288 (60%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VD++YD AA G+ Q+ V+IH+GSRG GHQV D + +
Sbjct: 195 QIGTLGSGNHFLEVQYVDQVYDLEAAEAYGLFP-NQIAVLIHTGSRGLGHQVCQDYVERF 253
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
K R IE D+QLA A I S + + + + + L H + +AF +
Sbjct: 254 LKVAPRYGIELVDKQLAAAPIRSPEGEDYLQAMAAAANFAFANRQLIAHFVREAF-EAVG 312
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP + + V+YD++HN AK EEH + +LVHRKG+TRAF P +P IP +YQ GQ
Sbjct: 313 FTPREHGLRVLYDLAHNNAKFEEH----GGRRVLVHRKGATRAFGPGYPEIPREYQRVGQ 368
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G MG SYVL GTE M FGS+CHGAGR +SR +++R + ++ +L +GI
Sbjct: 369 PVLVPGDMGRYSYVLAGTEGAMAHAFGSSCHGAGRKMSRHQAKRVARERNLVKELAERGI 428
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 429 LVRAATRATVDEEMPEAYKDVSSVVEAVQGAGIGKKVARLRPLIVVKG 476
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA ++F +P GVGS + + + ++L+E L+ G W +R+G+ ED E GR+
Sbjct: 119 LADALFRLVPSGVGSERKDVRFSKKELKEILKEGAGWLVRKGFGHPEDLRFIESEGRLPW 178
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG PQ+
Sbjct: 179 ANPDKVSERAFERGAPQI 196
>gi|357402586|ref|YP_004914511.1| hypothetical protein SCAT_5020 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386358659|ref|YP_006056905.1| hypothetical protein SCATT_50120 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337768995|emb|CCB77708.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365809167|gb|AEW97383.1| hypothetical protein SCATT_50120 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 481
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 126/290 (43%), Positives = 176/290 (60%), Gaps = 9/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G QV + +GNH+ E+Q VD ++D AA MG+ GQVCVMIH GSRG GHQ+ TD
Sbjct: 196 RGLG-QVGSLGSGNHFLEVQAVDVVHDAAAARAMGLAP-GQVCVMIHCGSRGLGHQICTD 253
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHV-IYDAFAKQFN 243
+ M+ M R IE DRQLACA ++S +A+ + + + A++
Sbjct: 254 HVRAMDPVMPRYGIEVPDRQLACAPVDSGPGRAYLAAMAAAANYARANRQLLAEAARRAF 313
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ ++YD+SHN+AK E H V D + L VHRKG+TRA PP HP +P D
Sbjct: 314 AESVGCGLDLVYDISHNMAKLERHPVGEDAAPRLLCVHRKGATRALPPGHPDLPADLSAV 373
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVLTG G + + STCHGAGR SR ++ R +D + +LE+
Sbjct: 374 GQPVLIPGTMGTASYVLTGVADG--DAWHSTCHGAGRVRSRHRAAREIDGHRLRGELEAH 431
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
G+++R +S + + EEAP++YK+V +VV G+ +K +L P+ V+KG
Sbjct: 432 GVAVRASSWRGLAEEAPQAYKDVDEVVAAAEGAGLCRKVARLVPLGVVKG 481
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
ERL + +P G G G+ ++ +L E L G +++ G+ D E CE+ G +
Sbjct: 122 LERLMDGLGRRVPRGAGRGGVWHVSRAELAEVLAHGARYAVERGHGVPRDLERCEDGGTL 181
Query: 528 LNADPSKVSMRAKKRGLPQVS 548
ADP +V RA RGL QV
Sbjct: 182 PGADPGQVGERAVDRGLGQVG 202
>gi|118580558|ref|YP_901808.1| hypothetical protein Ppro_2142 [Pelobacter propionicus DSM 2379]
gi|118503268|gb|ABK99750.1| protein of unknown function UPF0027 [Pelobacter propionicus DSM
2379]
Length = 485
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 180/296 (60%), Gaps = 13/296 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ QV T +GNHY EIQ+V + ++D A+ G+ QV + HSGSRGFGHQVA
Sbjct: 192 RGY-DQVGTLGSGNHYCEIQVVRPENVFDNKTAAAFGLTIPNQVVISFHSGSRGFGHQVA 250
Query: 183 TDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
TD L + M I TNDR+LACA S +A+ A + +H I
Sbjct: 251 TDYLATFLRVMTGTYGIRTNDRELACAPFRSPDGQAYFAAMKCAVNMGFANRQMILHRIR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F++ FN +P DL M ++YDV+HN AK E H +DG+++ +LVHRKG+TR + P IP
Sbjct: 311 EVFSRVFNRSPQDLGMGMVYDVAHNTAKLETHEIDGEKREVLVHRKGATRCYGPAMAGIP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
YQ TGQPV+IGG+M T S++L G E TF +T HG+GR +SR ++++ + Q++L
Sbjct: 371 ARYQETGQPVIIGGSMETGSFLLAG-ESSAASTFFTTAHGSGRTMSRHQAKKMVKGQKLL 429
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++E +GI +R ++ + EEA +YK++ +V G+S++ KL P+ IKG
Sbjct: 430 GEMEQRGIHVRTSTYGGLAEEAGFAYKDMDEVASATEMAGLSRRVAKLLPMGNIKG 485
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ L S+F IP GVG G I + + + L G W L+ G+ W ED E EE G
Sbjct: 119 KELVDSLFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKNGFAWPEDLELTEEGGCFE 178
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGSSKYC 559
ADP S +A +RG QV G+G + YC
Sbjct: 179 GADPGACSDKAVERGYDQVGT-LGSG-NHYC 207
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L S+F IP GVG G I + + + L G W L+ G+ W ED E E
Sbjct: 119 KELVDSLFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKNGFAWPEDLELTE 172
>gi|48477677|ref|YP_023383.1| RtcB protein [Picrophilus torridus DSM 9790]
gi|48430325|gb|AAT43190.1| RtcB protein [Picrophilus torridus DSM 9790]
Length = 470
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 238/475 (50%), Gaps = 87/475 (18%)
Query: 1 MNVEGVFFVNDHL-EKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDV 59
M V ++ND L K+ E LR Q+ NVA+LPGIV + +PD+
Sbjct: 19 MKVPAYIYINDELLSKINDEPLR----------------QLMNVASLPGIVKAAYAMPDI 62
Query: 60 H--------SVPSTQW------------------------LSDNTMRS------SNIWKR 81
H V + + +S N +S I+K
Sbjct: 63 HLGYGFPIGGVAAFDYDEGIVSPGGVGYDINCGVSLIKTNISYNDAKSRIKDLIDEIFKN 122
Query: 82 SP--LTLGAGNHYAEIQIVDEIYD--KWAASK--------MGIEDVGQVC-----VMIHS 124
P + L + + + D + D KWA SK E+ G + V +
Sbjct: 123 VPAGIDLKSSFRVNKNDMTDILSDGIKWAVSKGYGTERDIESTEENGSMNSNPDKVSEKA 182
Query: 125 GSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
SRG ++V + GNH+ EIQ VD I+D+ A GIE + +M+H+GSRG GHQVA
Sbjct: 183 ISRGI-NEVGSLGGGNHFLEIQKVDRIFDERTARYFGIEK-DNIMIMVHTGSRGLGHQVA 240
Query: 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYD 236
TD L+++ + + +I+ DRQL A S +++ A F + ++ I
Sbjct: 241 TDYLMELNE---KSDIKVKDRQLISAYTKSGIGESYIMAMNSAANFGFVNRQIILYKIRR 297
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
AF F + L + ++Y ++HN+AK EEH +D K+ L+VHRKG+TRAFP +
Sbjct: 298 AFESVFKKDFESLGLDLVYSLAHNMAKIEEHNIDNKRLKLIVHRKGATRAFPAGYS--TG 355
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
++ TG PVLI G MGT SYVLTG + M+ +FGS+CHGAGRALSR K+ + +VL
Sbjct: 356 KFKNTGHPVLIPGDMGTASYVLTGNKNNMEMSFGSSCHGAGRALSRKKANDAFNPDDVLK 415
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L + GI +R AS K++ EEAP SYK++ +V+ +G+S + P+ V+KG
Sbjct: 416 NLGNHGIYVRAASSKVITEEAPGSYKDIDEVIKIVSELGMSNIISRHVPLGVMKG 470
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ + K + L +F ++P G+ K +N D+ + L G+ W++ +GY D E
Sbjct: 105 YNDAKSRIKDLIDEIFKNVPAGIDLKSSFRVNKNDMTDILSDGIKWAVSKGYGTERDIES 164
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
EE G M N++P KVS +A RG+ +V
Sbjct: 165 TEENGSM-NSNPDKVSEKAISRGINEV 190
>gi|83717086|ref|YP_439510.1| hypothetical protein BTH_II1314 [Burkholderia thailandensis E264]
gi|257142637|ref|ZP_05590899.1| hypothetical protein BthaA_25983 [Burkholderia thailandensis E264]
gi|83650911|gb|ABC34975.1| Uncharacterized conserved protein [Burkholderia thailandensis E264]
Length = 477
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 169/283 (59%), Gaps = 12/283 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q +++IYD A + G++ GQV V IH GSRG GHQ+ T+ L M A K
Sbjct: 200 SGNHYLEVQEIEDIYDPACAQRYGLQR-GQVVVTIHCGSRGLGHQIGTEFLKAMVIAAKS 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S+ + + + + H+ + FAK
Sbjct: 259 YGIALPDRELACAPILSDLGERYLGAMRAAINCALANRQVLTHLTREVFAKVLPAA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + YDVSHN K E+H++DG+++ L VHRKG+TRAF P HP +P + GQPVL+GG
Sbjct: 315 QLTLFYDVSHNTCKVEDHVIDGRRRQLYVHRKGATRAFGPGHPALPDALRDAGQPVLVGG 374
Query: 310 TMGTCSYVLTGTEK-GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
+MGT SYVL G G + FGS CHGAGRA+SR + R + ++++L ++GI IR
Sbjct: 375 SMGTASYVLAGANAPGGERAFGSACHGAGRAMSRFAASRRWRGRALVDELAARGIVIRSL 434
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + + EEAP +YK+V VVD G+++K +L P+ IKG
Sbjct: 435 SDRGIAEEAPGAYKDVGAVVDAAAEAGLARKVARLAPLVCIKG 477
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP G+GS G + ++A ++ L G W++ +GY D E EE G + +A
Sbjct: 119 LADALFAHIPAGIGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIEEGGMVRHA 178
Query: 531 DPSKVSMRAKKR 542
PS VS AK+R
Sbjct: 179 KPSMVSALAKRR 190
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ + LA ++F HIP G+GS G + ++A ++ L G W++ +GY D E E
Sbjct: 115 VKKTLADALFAHIPAGIGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIE 170
>gi|383824838|ref|ZP_09980009.1| hypothetical protein MXEN_08407 [Mycobacterium xenopi RIVM700367]
gi|383336466|gb|EID14864.1| hypothetical protein MXEN_08407 [Mycobacterium xenopi RIVM700367]
Length = 455
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 174/286 (60%), Gaps = 9/286 (3%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
HQ+ + +GNH+ E+Q V E+ D+ A G+ GQVCVMIH GSRG GHQ+ TD +
Sbjct: 174 HQLGSLGSGNHFLEVQHVAEVLDEPVAKAFGLR-AGQVCVMIHCGSRGLGHQICTDEVHA 232
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTP 246
M+ AM+R + DRQLAC ++S + + + A + ++ A ++ F +
Sbjct: 233 MDHAMQRHGVRVPDRQLACVPVDSGEGRRYLGAMYAAANYARANRQILGRAASEVFLSV- 291
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++YD+SHN+A+ E H V G L VHRKG+TRA PP HP +P D GQPVL
Sbjct: 292 TGTGLELVYDISHNLARIERHEVAGDLVDLCVHRKGATRALPPGHPELPTDLADVGQPVL 351
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE-SQGISI 365
I G+MGT SYVL G G F STCHGAGR LSR ++ R++ + + ++LE QGI +
Sbjct: 352 IPGSMGTSSYVLAGVAGG--GAFHSTCHGAGRQLSRHQAARSVSQKVLRDQLERQQGILV 409
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
R AS + ++EEAP +YK+V++VV G+ + +L P+ V+KG
Sbjct: 410 RGASRRGLVEEAPAAYKDVSEVVAVAEQAGLCRTVARLEPLGVVKG 455
>gi|289547934|ref|YP_003472922.1| hypothetical protein Thal_0159 [Thermocrinis albus DSM 14484]
gi|289181551|gb|ADC88795.1| protein of unknown function UPF0027 [Thermocrinis albus DSM 14484]
Length = 480
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 176/282 (62%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VDEIYD+ + +G+ + GQV +M+HSGSRG GHQV D L + ++ +
Sbjct: 202 SGNHFVEIQVVDEIYDEEISETLGLYE-GQVTIMVHSGSRGLGHQVCVDYLKVAKDSLAK 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I D QLAC +S + +++ A + + ++ D + F + +DL
Sbjct: 261 YGISLPDMQLACMPFSSPEGQSYFGAMKAAANYAFANRQILGYLTADTVRRFFGLSWEDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+IYD++HNI K E+H V+GK L+VHRKG+TRAFPP H +P Y+ GQPVLI G
Sbjct: 321 GYRLIYDLAHNIGKVEKHRVNGKVMELVVHRKGATRAFPPFHGEVPPAYRSIGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+G S++L G E+ M+ +FGS CHGAGR +SR+K+ + L +E L K+ +G+ +
Sbjct: 381 DVGRYSFLLVGQERSMEMSFGSACHGAGRLMSRSKA-KELVRREGLEKV-LEGLVVVAKG 438
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EE P++YK+V++VV H +GI+K ++RP+ +KG
Sbjct: 439 KGTIAEEIPQAYKDVSEVVRVVHELGIAKLVARMRPLGTLKG 480
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q + ++P GVGS G + ++ ++L E L G W++ G+ + ED +H E G +
Sbjct: 119 EKLMQEILRNVPAGVGSTGKLKLSKKELAEVLVKGARWAVERGFGFEEDLQHIESEGALP 178
Query: 529 NADPSKVSMRAKKRG 543
ADPSKVS A +RG
Sbjct: 179 GADPSKVSNTAYERG 193
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ E+L Q + ++P GVGS G + ++ ++L E L G W++ G+ + ED +H E
Sbjct: 117 VREKLMQEILRNVPAGVGSTGKLKLSKKELAEVLVKGARWAVERGFGFEEDLQHIE 172
>gi|350561326|ref|ZP_08930165.1| protein of unknown function UPF0027 [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781433|gb|EGZ35741.1| protein of unknown function UPF0027 [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 476
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 172/278 (61%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q + ++D A+ G+ + GQV V IH GSRG GHQ+ T+ L +M A +
Sbjct: 200 SGNHYLEVQHITRVFDPDVAAAFGLAE-GQVVVSIHCGSRGLGHQIGTEFLREMAIAAQG 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
I+ DR+LACA I+S + + + L I A++ F D ++ +
Sbjct: 259 HGIDLPDRELACAPIHSEIGQRYLGAMRAAINCALANRQILTHLAREVFAEVLPDANLRL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN KTE H+VDG+ + L VHRKG+TRAF P HP +P + GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKTERHVVDGRDRELYVHRKGATRAFGPGHPDLPEALRGVGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GT +G + +F S CHGAGRA+SR ++ R + ++++L ++GI IR S + V
Sbjct: 379 ASYILVGTNEGERLSFNSACHGAGRAMSRHQATRQWRGRALVDELAARGILIRSPSLRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EAP +YK+V+ VV H G+++ ++ P+ IKG
Sbjct: 439 AGEAPGAYKDVSRVVQASHDAGLARLVARVEPMVCIKG 476
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
RLA ++F IP G+GS G I + + + + L G W++ + ED E EE G+M
Sbjct: 118 RLADALFAGIPAGLGSTGQIHLRDQQMTDMLRGGAAWAVERSFGQPEDLERIEERGQMAG 177
Query: 530 ADPSKVSMRAKKR 542
ADP VS +A+KR
Sbjct: 178 ADPEAVSQQARKR 190
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ RLA ++F IP G+GS G I + + + + L G W++ + ED E E Q
Sbjct: 115 VQPRLADALFAGIPAGLGSTGQIHLRDQQMTDMLRGGAAWAVERSFGQPEDLERIEERGQ 174
>gi|428774926|ref|YP_007166713.1| hypothetical protein PCC7418_0262 [Halothece sp. PCC 7418]
gi|428689205|gb|AFZ42499.1| protein of unknown function UPF0027 [Halothece sp. PCC 7418]
Length = 483
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 174/282 (61%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+ +V++++D AA+ MG+E G + V IH GSRGFGHQ+ TD + +KA+
Sbjct: 203 AGNHFLEVDVVEDVFDPEAAAVMGLEK-GCLAVQIHCGSRGFGHQICTDYVQDFQKAVLN 261
Query: 196 DNIETNDRQLACARINSNKNKAF---AKQFNTTPDDLDMHVIYDA---FAKQFNTTPDDL 249
I+ DR+L CA +NS + + + K + Y A F F D
Sbjct: 262 YGIQLPDRELVCAPLNSPEGEGYLTAMKAAANFAFANRQALAYHARRSFEAVFGAQADYP 321
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YD++HN+AK E H++ G++ T+ VHRKG+TRAF P +P +Y+ GQPVL+ G
Sbjct: 322 PLRQVYDIAHNMAKIETHVIGGEEMTVCVHRKGATRAFGPGFVGLPPEYRPFGQPVLVPG 381
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L GT + +FGS+CHGAGR +SR +++R + + +LE GI+I S
Sbjct: 382 SMGTESWILLGTPTNEKLSFGSSCHGAGRVMSRRQAKRTIRGDRLREQLEKDGIAICAGS 441
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP++YKNV VV+T GI++K +L PVAVIKG
Sbjct: 442 MPGLAEEAPQAYKNVNRVVETVSQAGIARKVARLHPVAVIKG 483
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
+ LA++++ + P GVG G +P++ ++ E G W L +GY ED E EE+G
Sbjct: 118 YLHDLAKTLYHNCPSGVGRGGSLPLSPKEFSEVCREGARWDLAQGYAIPEDLERTEEFGC 177
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ ADP++ S RAK+RG Q+
Sbjct: 178 LEGADPTQASKRAKQRGKDQL 198
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 413 YLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERL 471
YL++ LA++++ + P GVG G +P++ ++ E G W L +GY ED E E
Sbjct: 118 YLHD-LAKTLYHNCPSGVGRGGSLPLSPKEFSEVCREGARWDLAQGYAIPEDLERTEEF 175
>gi|383788369|ref|YP_005472938.1| hypothetical protein CSE_07090 [Caldisericum exile AZM16c01]
gi|381364006|dbj|BAL80835.1| hypothetical protein CSE_07090 [Caldisericum exile AZM16c01]
Length = 476
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 225/440 (51%), Gaps = 67/440 (15%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHS---------------------------------V 62
++Q+ VA LPGIV S+G+PD+H V
Sbjct: 40 ALEQLLWVATLPGIVKYSIGMPDIHQGYAFPIGGVGAFFYDGGVVSPGGVGFDINCGVRV 99
Query: 63 PSTQWLSDNTMRS-----SNIWKRSPLTLGAGNHYA----EIQIVDEIYDKWAASK---- 109
T D S ++K P LG+ + Y E + ++ +WA K
Sbjct: 100 IKTNLKYDYIKDSLEELGKTLFKMIPAGLGSTSDYTFSIEESKRAMKLGLEWAVEKGFAK 159
Query: 110 ----MGIEDVGQV-----CVMIHSGSRG---FGHQVATAGNHYAEIQIVDEIYDKWAASK 157
IED G++ CV H+ RG FG AGNH+ E+ V EIYDK A+
Sbjct: 160 EEDIENIEDNGRLEADPDCVSRHAIERGREEFG--TLGAGNHFLEVDKVVEIYDKDLANA 217
Query: 158 MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKA 217
G+ + GQ+ V +H+GSRG GHQ+ATD L M M++ + DR I + ++
Sbjct: 218 WGLYE-GQIVVWMHTGSRGLGHQIATDYLDLMRPKMEKFGFKLVDRDSVYFPIQEDLSQR 276
Query: 218 F------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+ A F + + + AF+K F + L M ++YDV+HNIAK E++ V+G
Sbjct: 277 YLLAMGSAANFAWVNRQVLTYFVRKAFSKVFGMDYEKLGMEILYDVAHNIAKQEQYEVNG 336
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K +TLLVHRKG+TR+FP HP + ++ TGQPVL+ G M SY+L G+EK ++ETFGS
Sbjct: 337 KLETLLVHRKGATRSFPKGHPKLKGKFKETGQPVLLPGDMKRGSYILVGSEKSIKETFGS 396
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
HGAGR LSR ++ + + +++V +L+ +GI + + EEAP +YK++ VV+
Sbjct: 397 VAHGAGRVLSRHQAVKQITFEDVQKELQREGILLYTNDKVVAREEAPLAYKSIDLVVEPI 456
Query: 392 HAVGISKKTFKLRPVAVIKG 411
G++ + +P+ VIKG
Sbjct: 457 VNEGLANLVARSKPLIVIKG 476
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L+ YI K+ E L +++F IP G+GS + + + A+++G++W++ +G+
Sbjct: 103 NLKYDYI----KDSLEELGKTLFKMIPAGLGSTSDYTFSIEESKRAMKLGLEWAVEKGFA 158
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRG 543
ED E+ E+ GR L ADP VS A +RG
Sbjct: 159 KEEDIENIEDNGR-LEADPDCVSRHAIERG 187
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +++F IP G+GS + + + A+++G++W++ +G+ ED E+ E
Sbjct: 114 EELGKTLFKMIPAGLGSTSDYTFSIEESKRAMKLGLEWAVEKGFAKEEDIENIE 167
>gi|401825221|ref|XP_003886706.1| hypothetical protein EHEL_011020 [Encephalitozoon hellem ATCC
50504]
gi|395459851|gb|AFM97725.1| hypothetical protein EHEL_011020 [Encephalitozoon hellem ATCC
50504]
Length = 477
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 199/351 (56%), Gaps = 35/351 (9%)
Query: 80 KRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC----------VMIHSGSRGF 129
KRS ++LG N I+D+ D SK ++ + C +I+ S+G
Sbjct: 143 KRSRISLGTLN-----SILDQGLDYLLKSKEIPDEDVEYCESNGHMDGDSRLINQKSKGR 197
Query: 130 G-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
G +Q+ T +GNHY E+Q VDE+Y+ A MGI Q+ +MIH+GSRG GH V D+L
Sbjct: 198 GLNQLGTLGSGNHYLEVQYVDEVYNAEKAEVMGIRK-DQIVLMIHTGSRGLGHGVCHDSL 256
Query: 187 VQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAK 240
++M + QLAC+ +S +++ + A F + AF K
Sbjct: 257 MKMAGK------NADHSQLACSPYSSKESQEYLLSMGCAANFAFVNRAVITKKARQAFEK 310
Query: 241 QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
F + DL IYDV HNIAK E H G + +VHRKG++RAFPP HP IP Y+
Sbjct: 311 VFPGSRLDL----IYDVCHNIAKVESHRSHGMEYDAIVHRKGASRAFPPGHPDIPWKYKE 366
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPV++GG+MGT SY+L G+EK M+ +FGSTCHGAGR LSR++S+ ++ V + L S
Sbjct: 367 IGQPVIVGGSMGTYSYILCGSEKSMELSFGSTCHGAGRVLSRSRSKDLFTHKNVCDLLRS 426
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q I R + ++EE+P YK++ VVD +G+++K +++P VIKG
Sbjct: 427 QDIVFRCPNDPGMVEESPGCYKDINRVVDLSDRIGLTEKVCRMKPCLVIKG 477
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 371 KLVMEE--APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFD-HIP 427
K VMEE A S ++ + D C G+ L + G + + FD + P
Sbjct: 35 KPVMEELDAGASISSIGQISDVCSLPGLIGDVIGLPDIHTGYGFPIG---CVAAFDINNP 91
Query: 428 VGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKG 487
V S G + + AL +D KE E LA +F IP G+GS
Sbjct: 92 ESVVSPGGVGYDINCGVRALRTNLDIKCL--------KEKAESLADELFGIIPTGMGSDK 143
Query: 488 IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
++ L L+ G+D+ L+ I ED E+CE G M + D ++ ++K RGL Q+
Sbjct: 144 RSRISLGTLNSILDQGLDYLLKSKEIPDEDVEYCESNGHM-DGDSRLINQKSKGRGLNQL 202
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M +V++ L K ++EEL G + + QI++V +LPG++G +GLPD+H
Sbjct: 21 MKTSATIYVDEELRKPVMEELD-------AGASISSIGQISDVCSLPGLIGDVIGLPDIH 73
Query: 61 S 61
+
Sbjct: 74 T 74
>gi|218441691|ref|YP_002380020.1| hypothetical protein PCC7424_4795 [Cyanothece sp. PCC 7424]
gi|218174419|gb|ACK73152.1| protein of unknown function UPF0027 [Cyanothece sp. PCC 7424]
Length = 481
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 183/293 (62%), Gaps = 12/293 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ T AGNH+ E+ +V+EI+D AA MG+ G + + IH GSRGFGHQ+ TD
Sbjct: 193 RGRG-QLGTLGAGNHFLEVDVVEEIFDPQAAEIMGLYQ-GCLVIQIHCGSRGFGHQICTD 250
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAF---AKQFNTTPDDLDMHVIYDA---F 238
+ + A+ I+ DR+L CA INS + +A+ K + Y A F
Sbjct: 251 YVQDFQLAVINYGIQLPDRELVCAPINSKEGQAYLGAMKAAANFAFANRQALAYHARRSF 310
Query: 239 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
A+ F + L +YD++HN+AK E H ++G++ T+ VHRKG+TRAF P + +Y
Sbjct: 311 AEVFGSPEKPLRQ--VYDIAHNMAKIETHKINGEEMTVCVHRKGATRAFGPGFEGLAPEY 368
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL 358
Q GQPVL+ G+MGT S++L GT+ + +FGS+CHGAGR +SR+K+++ + + L
Sbjct: 369 QKIGQPVLVPGSMGTESWILLGTKANDELSFGSSCHGAGRVMSRSKAKKEIRGDRLRKDL 428
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
E +GI++R S + EEAP++YK+V VV+T GI++K +LRPVAV+KG
Sbjct: 429 EKEGINVRAGSMPGLAEEAPKAYKDVNRVVETVSHAGIAQKVARLRPVAVVKG 481
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + LA S++ + P GVG KG IP++A +L++ G W+L +GY AED EE+
Sbjct: 116 KPYLSDLATSLYRNCPSGVGEKGSIPLSADELDKMCRQGAKWALEQGYAEAEDLSRTEEF 175
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G + ADP VS RAK RG Q+
Sbjct: 176 GCLEGADPGSVSKRAKDRGRGQL 198
>gi|404496480|ref|YP_006720586.1| hypothetical protein Gmet_1619 [Geobacter metallireducens GS-15]
gi|418064792|ref|ZP_12702168.1| protein of unknown function UPF0027 [Geobacter metallireducens
RCH3]
gi|78194083|gb|ABB31850.1| protein of unknown function UPF0027 [Geobacter metallireducens
GS-15]
gi|373563065|gb|EHP89266.1| protein of unknown function UPF0027 [Geobacter metallireducens
RCH3]
Length = 485
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 181/302 (59%), Gaps = 25/302 (8%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ +Q+ T +GNHY EIQ+ + IY++ A GI QV +M H GSRGFGHQVA
Sbjct: 192 RGY-NQIGTLGSGNHYLEIQVARPENIYNEELARAFGITIPNQVVIMFHCGSRGFGHQVA 250
Query: 183 TDALVQMEKAMKRD-NIETNDRQLACARINSNK------------NKAFAKQFNTTPDDL 229
TD L M+R I NDR+LACA S + N AFA + +
Sbjct: 251 TDYLQLFLSVMERKYGITVNDRELACAPFRSREGQDYFAAMKCAVNMAFANR------QV 304
Query: 230 DMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP 289
+H I + F+ F P DL M ++YDV+HN AK E HMVDG+++ LL+HRKG+TRAF P
Sbjct: 305 ILHRIREVFSDNFGRDPADLGMEMVYDVAHNTAKLETHMVDGRRRELLIHRKGATRAFGP 364
Query: 290 HHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL 349
+P Y+ TGQPV+IGG+M T SY+L G E G ETF +T HG+GR +SR ++++ +
Sbjct: 365 GMEGLPERYRETGQPVIIGGSMETGSYLLAG-EPGGSETFFTTAHGSGRTMSRHQAKKMV 423
Query: 350 DYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409
Q++ +E +GI +R AS + EE+ +YK++ DV + +S++ +L P+ +
Sbjct: 424 RGQKLQRDMEERGIYVRTASWGGLAEESGRAYKDIDDVAEATERAHLSRRVVRLLPIGNV 483
Query: 410 KG 411
KG
Sbjct: 484 KG 485
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E K L ++F +P GVGS G + ++ + E G W L+ G+ W ED E E
Sbjct: 113 EVKPRLRELVDALFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKRGFAWPEDLEMTE 172
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G AD SK+S +A RG Q+
Sbjct: 173 EGGCFPGADASKISHKAIDRGYNQI 197
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVGS G + ++ + E G W L+ G+ W ED E E
Sbjct: 121 LVDALFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKRGFAWPEDLEMTE 172
>gi|339484271|ref|YP_004696057.1| hypothetical protein Nit79A3_2907 [Nitrosomonas sp. Is79A3]
gi|338806416|gb|AEJ02658.1| protein of unknown function UPF0027 [Nitrosomonas sp. Is79A3]
Length = 475
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 164/282 (58%), Gaps = 13/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+V+ IYD A G+ + GQ+ + IH GSRG GHQV TD L+ + KA R
Sbjct: 201 SGNHYLEVQVVEHIYDALTAQAFGLHE-GQLIISIHCGSRGLGHQVGTDYLMMLAKAASR 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S + + + N + + H+ FA+ +
Sbjct: 260 LGIHLPDRELACAPIKSPEGQQYIGAMNAAINCALANRQILTHLTRATFAEVYPHAA--- 316
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++DVSHN K E H VDGK + L VHRKG+TRAF P HP +P Y+ GQPV+IGG
Sbjct: 317 -LETLFDVSHNTCKEEMHEVDGKSRLLHVHRKGATRAFAPGHPKLPARYRAAGQPVIIGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GT + F S HGAGRA+SR ++ + + + ++N L QGI IR S
Sbjct: 376 SMGTGSYILAGTSS--NQAFASCSHGAGRAMSRNQALKQWNGRALINDLAQQGILIRTRS 433
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP +YK+V V + G++++ LRP +KG
Sbjct: 434 MRGAAEEAPGAYKDVDQVAEVTEQAGLARRIAFLRPKVCVKG 475
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+LA +F IP GVG +G I +N L++ L G W++++GY A D E+ EE GR+
Sbjct: 117 LRQLADRLFATIPAGVGEEGNISLNPHQLDQVLHGGAQWAVKQGYGDAADLEYVEENGRV 176
Query: 528 LNADPSKVSMRAKKR 542
A P VS AKKR
Sbjct: 177 AGAIPENVSELAKKR 191
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
L +LA +F IP GVG +G I +N L++ L G W++++GY A D E+ E +
Sbjct: 116 LLRQLADRLFATIPAGVGEEGNISLNPHQLDQVLHGGAQWAVKQGYGDAADLEYVEENGR 175
Query: 474 SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREG--YIWAEDKEH 520
G IP N +L + + G +L G Y+ + EH
Sbjct: 176 -----------VAGAIPENVSELAKKRQRGEMGTLGSGNHYLEVQVVEH 213
>gi|164685934|ref|ZP_01947267.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165923968|ref|ZP_02219800.1| conserved hypothetical protein [Coxiella burnetii Q321]
gi|164601455|gb|EAX32118.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165916595|gb|EDR35199.1| conserved hypothetical protein [Coxiella burnetii Q321]
Length = 476
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 172/282 (60%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD+IYDK AA G+E QV + IH GSRG GHQ+ +D LV + K R
Sbjct: 200 SGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRGLGHQIGSDYLVALAKEASR 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LACA I S + + + N + L H+ +AF K + +
Sbjct: 259 LGVTLPDRELACAPIKSAEGQRYLGAMNAGINCALANRQLLTHLTREAFGKIIPS----V 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDVSHN K EEH+++G+++ L +HRKG+TRAF P +P +P Y+ GQPV+IGG
Sbjct: 315 FIETLYDVSHNTCKQEEHLINGQKRRLYIHRKGATRAFGPGNPNLPAPYRTVGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G + F S HGAGR +SR ++ + +++++ L S+GI IR +
Sbjct: 375 SMGTGSYLLAGNPETENHAFASASHGAGRLMSRRQASKKWSGRQLMDDLASEGIIIRSRT 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +V ++ G++++ L+P +KG
Sbjct: 435 MRGVAEEAPGAYKDVDEVAESTEKAGLARRVVFLKPKICVKG 476
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR +W E K E +A ++ IP GVG G I + L+E L G W+++ G+
Sbjct: 103 LRTNLVWYEFKGFREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGI 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKR 542
ED EE G+M A P VS AKKR
Sbjct: 163 REDLSFVEENGQMKGAIPDNVSELAKKR 190
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
E +A ++ IP GVG G I + L+E L G W+++ G+ ED E Q
Sbjct: 115 FREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQ 174
Query: 474 SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE--------DKEHCEEYG 525
KG IP N +L + + +L G + E DKE + YG
Sbjct: 175 -----------MKGAIPDNVSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYG 223
Query: 526 RMLNADPSKVSMRAKKRGL 544
L D +S+ RGL
Sbjct: 224 --LERDQVLISIHCGSRGL 240
>gi|212218599|ref|YP_002305386.1| RtcB [Coxiella burnetii CbuK_Q154]
gi|212012861|gb|ACJ20241.1| RtcB [Coxiella burnetii CbuK_Q154]
Length = 477
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 172/282 (60%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD+IYDK AA G+E QV + IH GSRG GHQ+ +D LV + K R
Sbjct: 201 SGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRGLGHQIGSDYLVALAKEASR 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LACA I S + + + N + L H+ +AF K + +
Sbjct: 260 LGVTLPDRELACAPIKSAEGQRYLGAMNAGINCALANRQLLTHLTREAFGKIIPS----V 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDVSHN K EEH+++G+++ L +HRKG+TRAF P +P +P Y+ GQPV+IGG
Sbjct: 316 FIETLYDVSHNTCKQEEHLINGQKRRLYIHRKGATRAFGPGNPNLPAPYRTVGQPVIIGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G + F S HGAGR +SR ++ + +++++ L S+GI IR +
Sbjct: 376 SMGTGSYLLAGNPETENHAFASASHGAGRLMSRRQASKKWSGRQLMDDLASEGIIIRSRT 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +V ++ G++++ L+P +KG
Sbjct: 436 MRGVAEEAPGAYKDVDEVAESTEKAGLARRVVFLKPKICVKG 477
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR +W E K E +A ++ IP GVG G I + L+E L G W+++ G+
Sbjct: 104 LRTNLVWYEFKGFREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGI 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKR 542
ED EE G+M A P VS AKKR
Sbjct: 164 REDLSFVEENGQMKGAIPDNVSELAKKR 191
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
E +A ++ IP GVG G I + L+E L G W+++ G+ ED E Q
Sbjct: 116 FREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQ 175
Query: 474 SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE--------DKEHCEEYG 525
KG IP N +L + + +L G + E DKE + YG
Sbjct: 176 -----------MKGAIPDNVSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYG 224
Query: 526 RMLNADPSKVSMRAKKRGL 544
L D +S+ RGL
Sbjct: 225 --LERDQVLISIHCGSRGL 241
>gi|386392565|ref|ZP_10077346.1| hypothetical protein DesU5LDRAFT_1968 [Desulfovibrio sp. U5L]
gi|385733443|gb|EIG53641.1| hypothetical protein DesU5LDRAFT_1968 [Desulfovibrio sp. U5L]
Length = 476
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 164/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V++I+D AS G+ GQV V IH GSRG GHQVAT+ + M A
Sbjct: 200 SGNHYLEVQHVEKIFDSRTASAYGLRP-GQVVVSIHCGSRGLGHQVATEHMAAMLAAAPG 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D +LA A I S + + + H + + FA F
Sbjct: 259 HGLTVADPELAFAPIESQAGVRYLGAMRAAINCALAGRQIITHHVREVFAALF----PGC 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDVSHN K E H V KTL VHRKG+TRA P HP +P ++ GQPV++GG
Sbjct: 315 RLALLYDVSHNTCKVERHAVGKSVKTLHVHRKGATRALGPGHPDLPEAFREVGQPVIVGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL+GTE F S CHGAGRA+SR ++ + + V+ L QGI++R +
Sbjct: 375 SMGTSSYVLSGTEASEALAFASACHGAGRAMSRKQAAKRFSAKGVVAALAGQGITVRTHT 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK++ +V T HA+G++ KT +LRP+A IKG
Sbjct: 435 LRGVAEEAPGAYKDIEEVAQTTHALGLAAKTARLRPLACIKG 476
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA + D +P G+G+ G + ++ RD++ L G W++REG+ A D CEE G M
Sbjct: 117 EGLADRLSDAVPAGLGAGGRLRLSDRDMDRMLAGGAAWAVREGFGEAGDLPRCEEGGTMP 176
Query: 529 NADPSKVSMRAKKR 542
ADP+ +S +A++R
Sbjct: 177 GADPAGISAKARER 190
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E LA + D +P G+G+ G + ++ RD++ L G W++REG+ A D E
Sbjct: 115 VREGLADRLSDAVPAGLGAGGRLRLSDRDMDRMLAGGAAWAVREGFGEAGDLPRCEE-GG 173
Query: 474 SMFDHIPVGVGSK 486
+M P G+ +K
Sbjct: 174 TMPGADPAGISAK 186
>gi|88813227|ref|ZP_01128467.1| hypothetical protein NB231_02128 [Nitrococcus mobilis Nb-231]
gi|88789549|gb|EAR20676.1| hypothetical protein NB231_02128 [Nitrococcus mobilis Nb-231]
Length = 476
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 167/278 (60%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +++D S G+ G + V IH GSR GHQ+ TD L +M A
Sbjct: 200 SGNHYLEVQHVAKVFDYETGSVFGLSP-GDIVVSIHCGSRALGHQIGTDFLKKMLAASAE 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I+ DR+LACA I S +++ A + + +I + F ++ +
Sbjct: 259 YGIKLPDRELACAPIESPLGQSYLGAMRAGINCALANRQIITYLTRQVFADVLPKANLTL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E H+VDGK+ L VHRKG+TRA P HP +P + GQPVLIGGTMGT
Sbjct: 319 LYDVSHNTCKEEVHVVDGKRMPLYVHRKGATRALGPGHPDLPAAFHPVGQPVLIGGTMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL GT + +F S CHGAGRA+SR ++ R+ +EVL++L ++GI +R S + +
Sbjct: 379 ASYVLVGTMESAALSFSSACHGAGRAMSRHQAVRHWRGREVLDELATRGILVRSPSMRAL 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+ VVD G+++K KL PV IKG
Sbjct: 439 AEEAPLAYKDVSAVVDAADRAGLARKVAKLEPVVCIKG 476
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+RL ++F+ IP GVG G + + ++L+ L G +W++ GY D E EE G M
Sbjct: 117 KRLVDTLFERIPCGVGRTGPMRLRRKELDAMLSGGAEWAVSCGYGTRVDLERIEERGCMR 176
Query: 529 NADPSKVSMRAKKRGLPQV 547
A +VS +AK R Q+
Sbjct: 177 GARAEEVSAQAKDRQCEQM 195
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+RL ++F+ IP GVG G + + ++L+ L G +W++ GY D E E
Sbjct: 116 QKRLVDTLFERIPCGVGRTGPMRLRRKELDAMLSGGAEWAVSCGYGTRVDLERIE 170
>gi|402468503|gb|EJW03655.1| hypothetical protein EDEG_02026 [Edhazardia aedis USNM 41457]
Length = 625
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 187/337 (55%), Gaps = 22/337 (6%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
+LG GNHY EIQ V +IYD A MGI GQ+ IH+GSRG GH T + +I
Sbjct: 301 SLGTGNHYLEIQKVSKIYDNEKAKIMGIYKEGQIVFSIHTGSRGLGH--VTCQEYLKKID 358
Query: 145 ---IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG-HQVATDALVQMEKAMKRDN--- 197
I DK K G +++ + I+ +R ++ D ++Q ++ DN
Sbjct: 359 EECIAKSTLDKKLMLKNGKKNLEEDLENINFANRATNSYKKIHDKILQFQEKKILDNQVG 418
Query: 198 ---IETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVI 254
+ T + + + N AFA + D + I F + + +I
Sbjct: 419 FTSVHTQNGTNYYTSMCAASNFAFANR--ALIDQITRKNIQALFPQT--------ECKLI 468
Query: 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
YDV HNIAK E+H+VD + LLVHRKG++R+FPP H IP YQ GQPV+IGG+MGTC
Sbjct: 469 YDVCHNIAKKEKHVVDNHKIDLLVHRKGASRSFPPFHAEIPDVYQNIGQPVIIGGSMGTC 528
Query: 315 SYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVM 374
SY+LTG +K M+++ GS CHGAGR SRA S++ + ++L + S+ I +R S ++
Sbjct: 529 SYILTGCDKSMEKSLGSACHGAGRVFSRAISKKMFNLDDILADMHSKDIVVRSLSGLGLI 588
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP SYK+V VVD C I++K +L PV VIKG
Sbjct: 589 EEAPNSYKDVNIVVDVCENADIARKVCQLEPVIVIKG 625
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVE + ++N+ L + + +E NS + G Q+AN+A+LP V + VGLPD+H
Sbjct: 22 MNVEPILYINEKLLEPLCKEHSNSSE-------MNGFTQLANIASLPS-VTKVVGLPDLH 73
>gi|298529908|ref|ZP_07017310.1| protein of unknown function UPF0027 [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509282|gb|EFI33186.1| protein of unknown function UPF0027 [Desulfonatronospira
thiodismutans ASO3-1]
Length = 474
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 166/278 (59%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q + EI+D AA G+ V + IH GSRG GHQVAT+ + M + R
Sbjct: 198 SGNHYLEVQAIQEIFDDNAAQAFGLRK-DDVVISIHCGSRGLGHQVATEYIRLMVQESAR 256
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
I DR LACA I S+ + + + L I A++ F T D + +
Sbjct: 257 QKIRLPDRDLACAPIFSDTGQQYLGAMRAAINCALANRQILSHLARESFETVFPDARISM 316
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDV HN + E+H G+ L VHRKG+TRAF P HP +P +Y GQPVLIGG+MGT
Sbjct: 317 LYDVCHNTCREEDHEFQGRSIRLFVHRKGATRAFGPGHPDLPAEYVQVGQPVLIGGSMGT 376
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY++ GT +GM +FGS CHGAGR +SR ++ + ++V++ L+ I +R S K +
Sbjct: 377 SSYIMAGTLEGMGISFGSACHGAGRVMSRKQAVKKYPGRQVIDHLQKMNIEVRSHSFKGL 436
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAPE+YK+V+ VV+ H +++K KL+P+ IKG
Sbjct: 437 SEEAPEAYKDVSRVVEVSHNSSLARKVAKLKPMICIKG 474
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++ ++P G+G+K + ++ RD++ L G W++ GY + D + EE G A
Sbjct: 117 LADLLYQNVPAGLGTKKGLKISGRDMDRMLAQGGKWAVGRGYGTSSDLKKTEEGGTASGA 176
Query: 531 DPSKVSMRAKKR 542
DP VS +A+KR
Sbjct: 177 DPLAVSDKARKR 188
>gi|330468161|ref|YP_004405904.1| hypothetical protein VAB18032_21020 [Verrucosispora maris
AB-18-032]
gi|328811132|gb|AEB45304.1| hypothetical protein VAB18032_21020 [Verrucosispora maris
AB-18-032]
Length = 472
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 170/289 (58%), Gaps = 16/289 (5%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
HQV + +GNH+ E+Q VD++YD A G+ QVCVMIH GSRG GHQ+ TD +
Sbjct: 192 HQVGSLGSGNHFLEVQAVDQVYDVPVAEAFGLRP-DQVCVMIHCGSRGLGHQICTDHVRA 250
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQF 242
ME+ M I+ DRQLACA + S +A+ A + L H F ++
Sbjct: 251 MEQVMGSHGIQVPDRQLACAPVASAAGRAYLGAMAAAANYARANRQLLAHATSRIFERE- 309
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
T LD+ +YDVSHN+AK EEH VDG + L VHRKG+TRA PP HP +P + + G
Sbjct: 310 --TGRRLDL--VYDVSHNLAKIEEHAVDGAVRRLCVHRKGATRALPPGHPDLPEELRDVG 365
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
QPVLI G+MGT SYVLTG F STCHGAGR SR ++ + +LE++
Sbjct: 366 QPVLIPGSMGTGSYVLTGVAN--SPAFASTCHGAGRVRSRKQAVAAGTGGDPRAELEARD 423
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I +R AS + + EE P +YK+V+ VV+ G+ +K +L P+ V+KG
Sbjct: 424 IVVRGASRRGLAEEMPAAYKDVSAVVEAAEGAGLCRKVARLVPLGVVKG 472
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHC 521
E + E + ++ P G+GS + + RD L+ L G ++++ G+ D C
Sbjct: 109 ELRPRLEAVMDALSAATPRGMGSGAVWQLTGRDELDAVLRGGSRYAVQRGFGIERDLLRC 168
Query: 522 EEYGRMLNADPSKVSMRAKKRGLPQV 547
E+YG + +ADP++VS RA +RG QV
Sbjct: 169 EDYGAVHDADPAQVSDRAIERGAHQV 194
>gi|226946626|ref|YP_002801699.1| hypothetical protein Avin_46150 [Azotobacter vinelandii DJ]
gi|226721553|gb|ACO80724.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 476
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 167/282 (59%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VDE++D AA G+ + G V IH GSRG GHQ+ TD L M A R
Sbjct: 200 SGNHYLEVQVVDELFDIRAARAYGLSE-GDVLATIHCGSRGMGHQIGTDYLRAMVIAAAR 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA ++S + + + + + AFA+ F +
Sbjct: 259 AGIALPDRELACAPLDSELGRRYLGAMRAAINCALANRQILTRLTRQAFAELF----PGI 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDVSHN K E H++ G+++ L VHRKG+TRAF H +P +Y+ GQPVLIGG
Sbjct: 315 RLPLLYDVSHNTCKEEWHVLGGQRRRLFVHRKGATRAFAAGHAELPAEYRQVGQPVLIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S+VL G + F S CHGAGRA+SR ++ R + V+++L ++GI IR S
Sbjct: 375 SMGTASWVLAGAAGTGEHAFASACHGAGRAMSRHEALRRWQGRSVVDELAARGILIRSPS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V VV+ G++ + +LRP+ IKG
Sbjct: 435 LRGVAEEAPLAYKDVGAVVEAAERAGLAVRVARLRPLVCIKG 476
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
SL G A+ + RLA ++ IP G+GS G + ++AR+++ L G W++ G+
Sbjct: 102 SLHTGLKLADVEALKPRLADVLYRRIPAGLGSTGALRLSAREMDAMLLGGARWAVEAGFG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
D EE GRM ADP+ VS +AKKR
Sbjct: 162 DEADLARIEESGRMAGADPAAVSEQAKKR 190
>gi|108803329|ref|YP_643266.1| hypothetical protein Rxyl_0480 [Rubrobacter xylanophilus DSM 9941]
gi|108764572|gb|ABG03454.1| protein of unknown function UPF0027 [Rubrobacter xylanophilus DSM
9941]
Length = 484
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/283 (42%), Positives = 173/283 (61%), Gaps = 16/283 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VDE+YD+ AA G+ GQV V+IHSGSRG GHQV T+ + + + +
Sbjct: 211 SGNHFLEVQYVDEVYDEEAARAYGLHP-GQVTVLIHSGSRGLGHQVCTEYVERFLQVAPK 269
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQ-FNTTPDD 248
IE DRQLA A I+S + +A+ + + L H +AFA+ F P
Sbjct: 270 YGIELVDRQLAAAPIDSPEGRAYLGAMSAAANFAFANRQLIAHFTREAFARAGFGGRP-- 327
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+ V+YD++HN AK EEH + +LVHRKG+TRAF P +P +P Y+ GQPVL+
Sbjct: 328 --LRVLYDLAHNNAKLEEH----GARRVLVHRKGATRAFGPGNPELPERYRGVGQPVLVP 381
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G MG S+VL GTE M+ETFGS+ HGAGR +SR ++++ ++++ ++E GI +R A
Sbjct: 382 GDMGRYSFVLAGTEGSMRETFGSSAHGAGRKMSRRRAKKAARGRDLIREMEQVGILVRAA 441
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EE E+YK+ +VV+ GI KK +LRP V+KG
Sbjct: 442 GRATVDEEMSEAYKDAAEVVEVTDGAGIGKKVARLRPQIVVKG 484
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 470 RLAQSMFDHIPVGVG-SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
RLA +F +P GVG + + DL L G W + GY D + E GR+
Sbjct: 128 RLADELFRSVPSGVGRGRKDFRIGRPDLRRLLVEGPSWLVERGYGEPGDLDGIESRGRLA 187
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP VS RA +RG PQ+
Sbjct: 188 GADPDAVSERAYQRGQPQL 206
>gi|381153721|ref|ZP_09865590.1| hypothetical protein Metal_3934 [Methylomicrobium album BG8]
gi|380885693|gb|EIC31570.1| hypothetical protein Metal_3934 [Methylomicrobium album BG8]
Length = 476
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 166/278 (59%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V EIY + A K G+ G + + IH GSRG GHQ+ T+ L +M A +
Sbjct: 200 SGNHYLEVQRVVEIYHRPVAEKFGLRTDG-IVITIHCGSRGLGHQIGTEFLKEMAMAAAQ 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I DR+LACA I S + + A + + ++ K +T + + +
Sbjct: 259 YKIALPDRELACAPIRSPLGRRYLGAMRAAINCALANRQILTHLTQKAVDTVFPGVRLEL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E + V+G++K L +HRKG+TRA+ P HP +P ++ GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKVEHYTVNGRKKELYIHRKGATRAYGPGHPDLPEAFREVGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL GTEKG F S CHGAGRA+SR ++ + +E++++L QGI IR S + +
Sbjct: 379 SSYVLCGTEKGANRAFSSACHGAGRAMSRHQAAKQWRGRELVDELARQGIIIRSPSLRGI 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+ VV G++ K +L PV IKG
Sbjct: 439 AEEAPLAYKDAGAVVGAADKAGLAHKIARLEPVICIKG 476
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
RLA ++ IP GVGS+G I +N ++ L G W++ G+ A D E EE G M
Sbjct: 118 RLADELYRAIPAGVGSRGKIHLNPHEMTAMLTGGARWAIDRGFGEAADLERIEERGCMAG 177
Query: 530 ADPSKVSMRAKKR 542
ADP++VS RA++R
Sbjct: 178 ADPAQVSARARER 190
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
RLA ++ IP GVGS+G I +N ++ L G W++ G+ A D E E
Sbjct: 118 RLADELYRAIPAGVGSRGKIHLNPHEMTAMLTGGARWAIDRGFGEAADLERIE 170
>gi|167569885|ref|ZP_02362759.1| hypothetical protein BoklC_08583 [Burkholderia oklahomensis C6786]
Length = 477
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 170/283 (60%), Gaps = 12/283 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q + +IYD A + G++ GQV V IH GSRG GHQ+ T+ L +M A K
Sbjct: 200 SGNHYLEVQEIADIYDPACAQRYGLQR-GQVVVTIHCGSRGLGHQIGTEFLKEMVIAAKS 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S+ + + + + H+ + F K
Sbjct: 259 HGIALPDRELACAPILSDLGERYLGAMRAAINCALANRQILTHLTREVFEKVLPAA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDVSHN K EEH++DG+++ L VHRKG+TRAF P HP +P + GQPVLIGG
Sbjct: 315 QLTLLYDVSHNTCKVEEHVIDGRRRQLYVHRKGATRAFGPGHPALPDALRDAGQPVLIGG 374
Query: 310 TMGTCSYVLTGTE-KGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
+MGT SY+L G + G + FGS CHGAGR++SR + R + ++++L S+GI IR
Sbjct: 375 SMGTASYILAGADAAGGERAFGSACHGAGRSMSRFAAARRWRGRALVDELASRGILIRSP 434
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + V EEAP +YK+V VVD G+++K +L P+ IKG
Sbjct: 435 SDRGVAEEAPGAYKDVGAVVDAAAEAGLARKVARLVPIVCIKG 477
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
+LA ++F HIP GVGS G + ++A ++ L G W++++GY D E EE G M +
Sbjct: 118 KLADALFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIEEGGVMRH 177
Query: 530 ADPSKVSMRAKKR 542
A PS VS AKKR
Sbjct: 178 AKPSAVSALAKKR 190
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+LA ++F HIP GVGS G + ++A ++ L G W++++GY D E E
Sbjct: 118 KLADALFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIE 170
>gi|21673436|ref|NP_661501.1| hypothetical protein CT0601 [Chlorobium tepidum TLS]
gi|21646538|gb|AAM71843.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 465
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 229/435 (52%), Gaps = 75/435 (17%)
Query: 37 VKQIANVAALPGIVGRSVGLPDV---HSVP-------------------------STQWL 68
++Q+ NVA LPGIVG ++ +PD+ + P + L
Sbjct: 46 LEQLVNVATLPGIVGFALAMPDIHEGYGFPIGGVAAFDPDAGIISPGGIGYDINCGVRLL 105
Query: 69 SDNTMRSS----------NIWKRSPLTLGAGNH--YAEIQIVDEIYD---KWAASKMG-I 112
+ + S I+++ P +G GN ++ Q+ + D + A G
Sbjct: 106 ATSQPFESVREKIPDLVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAFGYGEP 165
Query: 113 EDVGQV------------CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKM 158
ED+G + V ++ RG G Q+ T GNH+ EI +D I+D+ AA +M
Sbjct: 166 EDLGHIESGGVIDVADPSKVSQYAKQRG-GDQLGTLGTGNHFVEIDRIDAIFDQEAAVRM 224
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
G+ + GQ+ + +H+GSRG GHQ+ATD + M +AM + IE DR+LACA S + + +
Sbjct: 225 GLFE-GQIVIQLHTGSRGLGHQIATDYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEY 283
Query: 219 AKQFNTTPDDL--DMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 276
+ + + +I + + D + V+YDV+HNIAK E H +DG ++ L
Sbjct: 284 FSAMSAGANFAWANRQLITWEIRQAWRAVVGDDPLRVVYDVAHNIAKVETHEIDGHRRQL 343
Query: 277 LVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGA 336
LVHRKG+TRAF GQPV+I G+MGT S+VL G M E+FGS+CHGA
Sbjct: 344 LVHRKGATRAF-------------VGQPVIIPGSMGTASFVLEGGLASMHESFGSSCHGA 390
Query: 337 GRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGI 396
GR +SR K++ + ++ +LE+ G+S++ S + + EEA +YK++ +VV T + GI
Sbjct: 391 GRRMSRTKAKHMVQGSQLRQELEAIGVSVQAGSMQGLAEEASAAYKDIGEVVSTVVSAGI 450
Query: 397 SKKTFKLRPVAVIKG 411
++K +L PV V+KG
Sbjct: 451 ARKVVRLVPVGVMKG 465
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+E L + ++ +P GVG I +++ LE+ L G + GY ED H E
Sbjct: 115 REKIPDLVKEIYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAFGYGEPEDLGHIESG 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
G + ADPSKVS AK+RG Q+ GTG+
Sbjct: 175 GVIDVADPSKVSQYAKQRGGDQLGT-LGTGN 204
>gi|428200816|ref|YP_007079405.1| hypothetical protein Ple7327_0388 [Pleurocapsa sp. PCC 7327]
gi|427978248|gb|AFY75848.1| hypothetical protein Ple7327_0388 [Pleurocapsa sp. PCC 7327]
Length = 483
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 182/294 (61%), Gaps = 12/294 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ T AGNH+ E+ +++EIYD+ AA MG+ G + + IH GSRGFGHQ+ TD
Sbjct: 193 RGRG-QLGTLGAGNHFLEVDVIEEIYDREAAEIMGLHK-GCLALQIHCGSRGFGHQICTD 250
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFN-------TTPDDLDMHVIYDA 237
+ + A+ I+ DR+L CA I+S + +A+ L H +
Sbjct: 251 YVQDFQWAVINYGIQLPDRELVCAPIDSTEGQAYLAAMKAAANYAFANRQTLAYHA-RRS 309
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
F + F + + + +YD++HN+AK E+H ++GK T+ VHRKG+TRAF P +P +
Sbjct: 310 FKEIFGSQAGENPLRQVYDIAHNMAKIEKHRIEGKDMTVCVHRKGATRAFGPGFAGLPSE 369
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
Y+ GQPVL+ G+MGT S++L GT + +FGSTCHGAGR +SR K++R + + +
Sbjct: 370 YRPIGQPVLVPGSMGTESWILLGTNTNEELSFGSTCHGAGRVMSRHKAKREIRGDLLRQE 429
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
LE++GIS+R S + EEAP++YK+V+ VV+ GI+ K +L P+AV+KG
Sbjct: 430 LENEGISVRAGSMPGLAEEAPKAYKDVSRVVEAVSKAGIAHKVARLHPIAVVKG 483
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K + LA +++ + P GVG KG IP+ +L+ G W+L GY ED EE+
Sbjct: 116 KPYLSDLASTLYRNCPSGVGEKGSIPLTTEELDNVCRKGARWALEHGYALEEDLPRTEEF 175
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G + ADPSK S RAK+RG Q+
Sbjct: 176 GCLEGADPSKASKRAKERGRGQL 198
>gi|209364019|ref|YP_001424621.2| RtcB [Coxiella burnetii Dugway 5J108-111]
gi|207081952|gb|ABS77493.2| RtcB [Coxiella burnetii Dugway 5J108-111]
Length = 477
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 171/282 (60%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD+IYDK AA G+E QV + IH GSR GHQ+ +D LV + K R
Sbjct: 201 SGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRSLGHQIGSDYLVALAKEASR 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LACA I S + + + N + L H+ +AF K + +
Sbjct: 260 LGVTLPDRELACAPIKSAEGQRYLGAMNAGINCALANRQLLTHLTREAFGKIIPS----V 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDVSHN K EEH+++G+++ L +HRKG+TRAF P +P +P Y+ GQPV+IGG
Sbjct: 316 FIETLYDVSHNTCKQEEHLINGQKRRLYIHRKGATRAFGPGNPNLPAPYRTVGQPVIIGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G + F S HGAGR +SR ++ + +++++ L S+GI IR +
Sbjct: 376 SMGTGSYLLAGNPETENHAFASASHGAGRLMSRRQASKKWSGRQLMDDLASEGIIIRSRT 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +V ++ G++++ L+P +KG
Sbjct: 436 MRGVAEEAPGAYKDVDEVAESTEKAGLARRVVFLKPKICVKG 477
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR +W E K E +A ++ IP GVG G I + L+E L G W+++ G+
Sbjct: 104 LRTNLVWDEFKGFREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGI 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKR 542
ED EE G+M A P VS AKKR
Sbjct: 164 REDLSFVEENGQMKGAIPDNVSELAKKR 191
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 21/139 (15%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
E +A ++ IP GVG G I + L+E L G W+++ G+ ED E Q
Sbjct: 116 FREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQ 175
Query: 474 SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE--------DKEHCEEYG 525
KG IP N +L + + +L G + E DKE + YG
Sbjct: 176 -----------MKGAIPDNVSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYG 224
Query: 526 RMLNADPSKVSMRAKKRGL 544
L D +S+ R L
Sbjct: 225 --LERDQVLISIHCGSRSL 241
>gi|406908164|gb|EKD48755.1| hypothetical protein ACD_64C00148G0002 [uncultured bacterium]
Length = 486
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 177/288 (61%), Gaps = 12/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q+V+++Y++ A G+E V VMIH GSRG GHQ TD + M
Sbjct: 202 QIGTLGSGNHFLEVQVVEQLYNEGIAQTFGLEK-DMVTVMIHCGSRGLGHQTCTDYVRMM 260
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD------LDMHVIYDAFAKQFN 243
K + + DR+L A S + +A+ K + + H + +AF +
Sbjct: 261 MKKLPEWGYKLPDRELIYAPFRSPEGQAYFKAMAAAANYAWANRHMITHWVREAFQEIIG 320
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
+ + ++YD+SHN+ K E+HMV G +K L++HRKG+TRAF P + Y+ GQ
Sbjct: 321 SQAV---VSMVYDISHNLGKVEKHMVHGSEKELVLHRKGATRAFGPGRKEVAEKYRAVGQ 377
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVLI GTMGT SYVL GTE+ MQ FGS+CHGAGR LSR+++++ + ++ +L+ +GI
Sbjct: 378 PVLIPGTMGTSSYVLAGTEQSMQVAFGSSCHGAGRRLSRSQAKKEVRGSQLRQELQKRGI 437
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
IR S + EEAP +YK++ VV+ H G++KK ++RP+AVIKG
Sbjct: 438 IIRSDSDVGLAEEAPLAYKDIDTVVNVVHDAGLAKKVARVRPIAVIKG 485
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
+ E+LA +F IP GVG G + N D++ L+ G L GY ED CEE G
Sbjct: 123 YLEKLATRLFHKIPSGVGRGGALDFNQEDIDAILKQGAPRMLELGYGTFEDIALCEEQGH 182
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
M+ ADP +S AK+RG Q+
Sbjct: 183 MIEADPFLISKTAKERGRDQI 203
>gi|386813759|ref|ZP_10100983.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386403256|dbj|GAB63864.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 485
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/296 (41%), Positives = 180/296 (60%), Gaps = 13/296 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ +Q+ T +GNHY EIQ+ + I D+ A GI Q+ VM H+GSRGFGHQVA
Sbjct: 192 RGY-NQIGTLGSGNHYLEIQVARREYIMDEKLARVFGITVPDQIAVMFHTGSRGFGHQVA 250
Query: 183 TDALVQMEKAMK-RDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD L K M+ + I DR+LA A NS + K + + L +H I
Sbjct: 251 TDYLQVFLKVMQSKYGISVLDRELASAPFNSPEGKDYYAAMKCGINMSFANRQLILHRIR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F+ F +P D+ M+++YDV+HN AK E H ++G+ K LLVHRKG+TRAF P +P
Sbjct: 311 EVFSDVFGRSPQDMGMYMVYDVAHNTAKVENHSINGQTKKLLVHRKGATRAFGPGMEGVP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ GQPV+IGG+M T SY+L GT G Q TF ST HG+GR +SR+K+++ + +
Sbjct: 371 KRYKEIGQPVIIGGSMETGSYLLVGTSGGSQ-TFFSTAHGSGRTMSRSKAKKTWRGETLQ 429
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++E++GI +R AS + EEA +YK++ DV++ GISK+ P+ +KG
Sbjct: 430 HEMEARGIYVRSASWSGLAEEAGGAYKDINDVIEAAELSGISKRVALFIPIGNVKG 485
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E K H + L ++ IP GVGS G + ++ + + +E G W ++ GY W ED E
Sbjct: 111 YNEVKPHLKELVDKLYKKIPAGVGSTGFLKVSRDEFRQIVEQGAHWCVKHGYGWEEDLEM 170
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
EE G + AD K+S +A RG Q+
Sbjct: 171 TEESGCIEGADSKKISEKAIDRGYNQI 197
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++ IP GVGS G + ++ + + +E G W ++ GY W ED E E
Sbjct: 119 KELVDKLYKKIPAGVGSTGFLKVSRDEFRQIVEQGAHWCVKHGYGWEEDLEMTE 172
>gi|337287771|ref|YP_004627243.1| hypothetical protein TOPB45_0200 [Thermodesulfobacterium sp. OPB45]
gi|334901509|gb|AEH22315.1| protein of unknown function UPF0027 [Thermodesulfobacterium
geofontis OPF15]
Length = 476
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 173/288 (60%), Gaps = 13/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNHY EIQ V EIYD+ AS G+ QV + H GSR GHQ+ATD L +
Sbjct: 194 QIGTLGSGNHYLEIQYVAEIYDEKTASAFGLFK-DQVVITFHCGSRALGHQIATDYLPIL 252
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
KA ++ I +++L CA INS + + + K + + H++ + K F
Sbjct: 253 AKAARKYGIPIKEKELVCAPINSPEGEQYFKAMVCGVNCALANRQVITHLVREVVRKFF- 311
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
+ + V+YDVSHN K E H V+GK+ L VHRKG+TRA+ P +P Y+ GQ
Sbjct: 312 ---PGIHLKVLYDVSHNTCKVEYHEVNGKRLKLYVHRKGATRAWGPGREELPKAYREVGQ 368
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
P++IGG+MGT SY+L GT +G ++ FGS CHGAGR +SR ++ ++ +++ KL +GI
Sbjct: 369 PIIIGGSMGTASYILVGTSEGEEKAFGSACHGAGRTMSRHQAIKSFRADDIIEKLRKKGI 428
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ S K + EEAPE+YK+V +V++ G++KK KL P+ IKG
Sbjct: 429 IVIGKSKKGLAEEAPEAYKDVNEVINATCKAGLTKKVAKLIPMGCIKG 476
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + E+L + +F+ +P GVGS+G I ++ L+E L G W++ +GY ED E+ E
Sbjct: 111 EVEPYLEKLVRELFETVPSGVGSEGEIKLSPSQLDEVLVGGAKWAVEKGYGELEDLEYIE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G M ADPS VSM AKKR Q+
Sbjct: 171 EKGCMPGADPSYVSMEAKKRQHRQI 195
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E+L + +F+ +P GVGS+G I ++ L+E L G W++ +GY ED E+ E
Sbjct: 117 EKLVRELFETVPSGVGSEGEIKLSPSQLDEVLVGGAKWAVEKGYGELEDLEYIE 170
>gi|322420994|ref|YP_004200217.1| hypothetical protein GM18_3507 [Geobacter sp. M18]
gi|320127381|gb|ADW14941.1| protein of unknown function UPF0027 [Geobacter sp. M18]
Length = 486
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 14/297 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVD--EIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQV 181
RG+ +Q+ T +GNHY EIQ+V I D+ A G+ V QV +M H GSRGFGHQV
Sbjct: 192 RGY-NQLGTLGSGNHYCEIQVVQPQNIMDQELADAFGLTVVPNQVVIMFHCGSRGFGHQV 250
Query: 182 ATDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
ATD L M+R I+ DR+LACA +S + +A+ + + +H +
Sbjct: 251 ATDYLKLFLSVMQRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAFANRQVILHRV 310
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+ F++ F+ +PD+L M ++YDV+HN AK E+H +G QK LLVHRKGSTRAF P P +
Sbjct: 311 REVFSELFHASPDELGMRMVYDVAHNTAKLEKHRCNGSQKELLVHRKGSTRAFGPGLPGL 370
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y+ TGQPV+IGG+M T SY+L G G F +T HG+GR +SR ++++ ++
Sbjct: 371 PECYRNTGQPVIIGGSMETGSYLLAGMSTGADAWF-TTAHGSGRTMSRHEAKKTFRGDKL 429
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++E +GI +R S + EEA +YKN+ +VV+ G+SK+ +L P+ IKG
Sbjct: 430 QREMEQRGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVPIGNIKG 486
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+L +F IP GVG G + + D ++ G W L+ G+ +D E EE G
Sbjct: 118 LHQLVDRLFARIPTGVGCHGFVKLKQDDFLSVVQQGSRWCLKNGFATRDDLEMTEEGGCF 177
Query: 528 LNADPSKVSMRAKKRGLPQVSDRRGTGSSKYC 559
AD S VS +A +RG Q+ G+G + YC
Sbjct: 178 PGADASHVSEKAVERGYNQLGT-LGSG-NHYC 207
>gi|167562703|ref|ZP_02355619.1| hypothetical protein BoklE_09104 [Burkholderia oklahomensis EO147]
Length = 477
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 169/283 (59%), Gaps = 12/283 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q + +IYD A + G++ GQV V IH GSRG GHQ+ T+ L +M A K
Sbjct: 200 SGNHYLEVQEIADIYDPACAQRYGLQR-GQVVVTIHCGSRGLGHQIGTEFLKEMVIAAKS 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S+ + + + + H+ + F K
Sbjct: 259 HGIALPDRELACAPILSDLGERYLDAMRAAINCALANRQILTHLTREVFEKVLPAA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDVSHN K EEH++DG+++ L VHRKG+TRAF P HP +P + GQPVLIGG
Sbjct: 315 QLTLLYDVSHNTCKVEEHVIDGRRRQLYVHRKGATRAFGPGHPALPDALRDAGQPVLIGG 374
Query: 310 TMGTCSYVLTGTE-KGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
+MGT SY+L G + G + FGS CHGAGR++SR + R + ++++L S+GI IR
Sbjct: 375 SMGTASYILAGADAAGGERAFGSACHGAGRSMSRFAAARRWRGRALVDELASRGILIRSP 434
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + V EEAP +YK+V VVD G++ K +L P+ IKG
Sbjct: 435 SDRGVAEEAPGAYKDVGAVVDAAAEAGLALKVARLVPIVCIKG 477
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
+LA ++F HIP GVGS G + ++A ++ L G W++++GY D E EE G M +
Sbjct: 118 KLADALFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIEEGGVMRH 177
Query: 530 ADPSKVSMRAKKR 542
A PS VS AKKR
Sbjct: 178 AKPSAVSALAKKR 190
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+LA ++F HIP GVGS G + ++A ++ L G W++++GY D E E
Sbjct: 118 KLADALFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIE 170
>gi|358636527|dbj|BAL23824.1| hypothetical protein AZKH_1503 [Azoarcus sp. KH32C]
Length = 476
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 167/282 (59%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD ++D AA G+E VG V V IH GSRG GHQ+ TD L +M A
Sbjct: 200 SGNHYLEVQVVDAVFDGEAAQAYGLE-VGDVVVTIHCGSRGLGHQIGTDYLREMAIAAPA 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA + S+ + + + + H+ AFA+ F +
Sbjct: 259 AGIALPDRELACAPLKSDLGQRYLGAMRAGINCALANRQILTHLARGAFAEVF----PGV 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ V+YDVSHN K E H V ++ L VHRKG+TRAF P H +P +Y+ GQPVLIGG
Sbjct: 315 HLPVLYDVSHNTCKEESHRVGDTRRRLFVHRKGATRAFGPGHVELPREYREVGQPVLIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L G + FGS CHGAGRA+SR ++ R + ++++L ++GI IR S
Sbjct: 375 SMGTASWILAGAAGTEERAFGSACHGAGRAMSRHEALRRWQGRNIVDELAARGILIRSPS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V VVD G++ K +L P+ +KG
Sbjct: 435 LRGVAEEAPLAYKDVGAVVDAADRAGLALKVARLVPLVCVKG 476
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+LR G A+ + H +RLA ++ IP GVGS G++ ++ ++ L+ G W+++EG+
Sbjct: 102 TLRTGLKLADVEAHKKRLADLLYARIPAGVGSTGVVHLSGAGMDAMLKGGARWAVKEGWG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
D H EE G ADP+ VS AKKR
Sbjct: 162 SEADLAHIEESGCAAGADPAAVSDMAKKR 190
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+RLA ++ IP GVGS G++ ++ ++ L+ G W+++EG+ D H E
Sbjct: 116 KKRLADLLYARIPAGVGSTGVVHLSGAGMDAMLKGGARWAVKEGWGSEADLAHIE 170
>gi|197117379|ref|YP_002137806.1| hypothetical protein Gbem_0989 [Geobacter bemidjiensis Bem]
gi|197086739|gb|ACH38010.1| protein of unknown function UPF0027 [Geobacter bemidjiensis Bem]
Length = 486
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/297 (41%), Positives = 182/297 (61%), Gaps = 14/297 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQV 181
RG+ +Q+ T +GNHY EIQ+V + I D A+ G+ V QV +M H GSRGFGHQV
Sbjct: 192 RGY-NQLGTLGSGNHYCEIQVVKPENIMDAELAAAFGLTTVPNQVVIMFHCGSRGFGHQV 250
Query: 182 ATDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
ATD L M R I+ DR+LACA +S + +A+ + + +H I
Sbjct: 251 ATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAFANRQVILHRI 310
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+ F+ F+ +PD+L + ++YDV+HN AK E H V+G +K LLVHRKGSTRAF P +
Sbjct: 311 REVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGSTRAFGPGAAGL 370
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y TGQPV+IGG+M T SY+L G + G + F +T HG+GR +SR ++++N ++
Sbjct: 371 PGCYAKTGQPVIIGGSMETGSYLLAGMQSG-ADAFFTTAHGSGRTMSRHEAKKNFRGDKL 429
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++E++GI +R S + EEA +YKN+ +VV+ G+SK+ +L P+ IKG
Sbjct: 430 QREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVPIGNIKG 486
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+L +F IP GVG G + + D ++ G W L+ G+ ED + EE G
Sbjct: 118 LHQLVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCF 177
Query: 528 LNADPSKVSMRAKKRGLPQVSDRRGTGSSKYC 559
AD S +S +A +RG Q+ G+G + YC
Sbjct: 178 SGADASHISDKAVERGYNQLGT-LGSG-NHYC 207
>gi|374301623|ref|YP_005053262.1| hypothetical protein [Desulfovibrio africanus str. Walvis Bay]
gi|332554559|gb|EGJ51603.1| protein of unknown function UPF0027 [Desulfovibrio africanus str.
Walvis Bay]
Length = 477
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 163/282 (57%), Gaps = 10/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY EIQ+V++I D AA G+ +G V V IH GSRG GHQVATD M +
Sbjct: 200 SGNHYLEIQVVEDIIDATAAEAFGLR-LGDVLVAIHCGSRGLGHQVATDYSKLMLAEAPK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I R LACA I S + + + + H++ +AF + F + +
Sbjct: 259 HKITLPHRDLACAPIRSELGRRYLGAMRAGINCALANRQILTHLVREAFERVFRKS---V 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HN + EEH V + L VHRKG+TRA PP HP +P ++ GQPVL+GG
Sbjct: 316 ALPLLYDVAHNTCREEEHRVGPVSRRLYVHRKGATRALPPGHPALPAEFSKVGQPVLVGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G ++ S CHGAGR +SR +++R +EV+ L+ QGI +R S
Sbjct: 376 SMGTASYILAGVAGSEGKSLSSACHGAGRLMSRGEAKRRFQGREVVGSLKRQGILVRTPS 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K V EEAP +YK+V V++ G+++ K+RPV +KG
Sbjct: 436 FKGVAEEAPGAYKDVHMVIEVTQHAGLARPVAKVRPVINVKG 477
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E LA ++F IP GVGS G I +N + + L G W++ G+ +D H E++G
Sbjct: 115 HQETLADALFATIPAGVGSTGAIRLNDDETDAMLARGAAWAVGRGWGRGDDLAHIEDHGT 174
Query: 527 MLNADPSKVSMRAKKR 542
A+P VS A+KR
Sbjct: 175 APGAEPELVSAEARKR 190
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E LA ++F IP GVGS G I +N + + L G W++ G+ +D H E
Sbjct: 116 QETLADALFATIPAGVGSTGAIRLNDDETDAMLARGAAWAVGRGWGRGDDLAHIE 170
>gi|269986129|gb|EEZ92443.1| protein of unknown function UPF0027 [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 489
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 176/283 (62%), Gaps = 7/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
+GNHY EIQ +++ ++K A+ + ++ + GQV +M H+GSRGFGHQ+A+D + + +
Sbjct: 207 SGNHYLEIQEINKDFNKEIANALDLDIIQGQVVIMFHTGSRGFGHQIASDYIKKFLEYSS 266
Query: 195 RDNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
+ NI DRQLA A NS + + + K F + + I +AF K F T D
Sbjct: 267 KHNILLKDRQLAYAPFNSKEGQDYFKAMSCGINFAFVNRQIITYQIREAFKKIFKRTEQD 326
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L + V+YDVSHN AK EE+ ++ K+ +++HRKG+TR+F P + + + GQPV++G
Sbjct: 327 LGLEVVYDVSHNTAKIEEYNIENKKTKVIIHRKGATRSFGPGNKELTGILKQIGQPVIVG 386
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+M T SY+ GTEK +E+FG+T HG+GR +SR +R + ++L +++ +GI I+
Sbjct: 387 GSMETGSYLCVGTEKAEKESFGTTLHGSGRTMSRVAARTAIKPDKLLKRMKEKGIYIKAN 446
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EE +YK++ +VV++ GIS+K L+P+ IKG
Sbjct: 447 SITGLTEEGGSAYKDINEVVNSMEEAGISRKVLSLKPIGNIKG 489
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSK------GIIPMNARDLEEALEMGMDWSLREGYIWAE 516
E + L ++F+ +P GVGS I + L+E E GMDW++R GY +
Sbjct: 112 EVRPRIRELVDTLFNMVPAGVGSNSSQSLLNIKNLGKPALKEIAEEGMDWAIRNGYANRK 171
Query: 517 DKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
DKE EE G + +AD SKVS A KRG Q+
Sbjct: 172 DKERTEEKGSIKSADFSKVSEDAFKRGKKQL 202
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 418 LAQSMFDHIPVGVGSK------GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F+ +P GVGS I + L+E E GMDW++R GY +DKE E
Sbjct: 120 LVDTLFNMVPAGVGSNSSQSLLNIKNLGKPALKEIAEEGMDWAIRNGYANRKDKERTE 177
>gi|224826900|ref|ZP_03699999.1| protein of unknown function UPF0027 [Pseudogulbenkiania
ferrooxidans 2002]
gi|224600887|gb|EEG07071.1| protein of unknown function UPF0027 [Pseudogulbenkiania
ferrooxidans 2002]
Length = 477
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 164/278 (58%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD I+D+ AA+ G+ VGQV V IH GSRG GHQ+ TD L+ + K+
Sbjct: 201 SGNHYLEVQVVDRIHDEAAAAAFGLR-VGQVLVSIHCGSRGLGHQIGTDYLLLLAKSAAS 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
+ DR+LACA I S + + N+ + L I A + +
Sbjct: 260 LGLTLPDRELACAPIRSEAGQHYLGAMNSAINCALANRQILAALTRGVLARYWPSARLDT 319
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
++DVSHN K E H V+G+++TL VHRKG+TRAF H +P Y+ GQPV+IGG+MGT
Sbjct: 320 LFDVSHNTCKVERHRVEGRERTLYVHRKGATRAFGAGHAGLPDAYRAVGQPVIIGGSMGT 379
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L G G F S HGAGRA+SR ++ + +++L+ L +QGI IR S +
Sbjct: 380 GSYILAGNPPGQNHAFASASHGAGRAMSRHQALKFWHGRQLLDDLAAQGILIRTGSLRGA 439
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V V + A G++++ LRP IKG
Sbjct: 440 AEEAPGAYKDVDRVAEVTEAAGLARRVAFLRPKICIKG 477
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR W + LA S+F IP GVG +G + + R+LE+ + G W++ +G+
Sbjct: 104 LRTDLSWEQLAPQRHHLADSLFREIPAGVGEEGRLRLAVRELEQVMRQGAHWAVAQGFGP 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
A+D + EE G + A+P VS AKKR L ++
Sbjct: 164 ADDLPYIEERGCVGGAEPGWVSDLAKKRQLGEM 196
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA S+F IP GVG +G + + R+LE+ + G W++ +G+ A+D + E
Sbjct: 120 LADSLFREIPAGVGEEGRLRLAVRELEQVMRQGAHWAVAQGFGPADDLPYIE 171
>gi|436842327|ref|YP_007326705.1| tRNA-splicing ligase RtcB [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171233|emb|CCO24604.1| tRNA-splicing ligase RtcB [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 475
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 154/477 (32%), Positives = 233/477 (48%), Gaps = 89/477 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNV+ VFF + ++ L L+E V+Q+ +VA+LPG+ G +PD H
Sbjct: 22 MNVDAVFFGDVNI-ILQLDETT--------------VRQVRDVASLPGVAGPVCVMPDAH 66
Query: 61 S--------------------------------------VPSTQWLSDNTMRSSNIWKRS 82
S + S + + ++K+
Sbjct: 67 SGYGFPIGGVAAFDVDHGVISAGGVGFDISCGVRTLTTGLKRQDLFSCDVKLADALFKKI 126
Query: 83 PLTLGAGNH-YAEIQIVDEIYDKWAA----SKMG-IEDVGQVCVMIHSGSRGFG------ 130
P G G + + ++DE+ AA KMG ED+G++ +G F
Sbjct: 127 PAGTGVGGAIHLDGNLMDEMLSGGAAWVVGRKMGRPEDLGRI---EGNGRNEFAAPSKVS 183
Query: 131 --------HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+Q+ + +GNHY E+Q V++I+D A+ G+E V V V IH GSRG GHQ
Sbjct: 184 AKAKQRMINQLGSLGSGNHYLEVQYVEKIFDNEKAAGFGVE-VDDVVVSIHCGSRGLGHQ 242
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNK----AFAKQFNTTPDDLDM--HVI 234
+A D L M A I + +ACA INS K A N + + H++
Sbjct: 243 IAKDYLPLMVDAAPGFGINLPSKDIACAPINSQLGKDYWGAMGAGINCALANRQVLTHLV 302
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+ FA+ D+ +IYDVSHN + E+ ++G+ KTL +HRKG+TRA P H +
Sbjct: 303 RECFAEILPQA----DLKLIYDVSHNTCQKEKFNINGRTKTLYIHRKGATRALGPGHKEL 358
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P +++ GQPV+IGG+MGT SY+L GT++ +F S CHGAGR +SR K+R+ ++V
Sbjct: 359 PDEFKKIGQPVIIGGSMGTSSYILAGTDESADLSFSSCCHGAGRTMSRIKARKCFKGKKV 418
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+L QGI IR S + EEAP +YK++ ++ + ISK +LRP+ IKG
Sbjct: 419 QKELGRQGIIIRSGSINGIAEEAPSAYKDINGIIKSTEQAEISKAVARLRPLLCIKG 475
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 470 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
+LA ++F IP G G G I ++ ++E L G W + ED E GR
Sbjct: 117 KLADALFKKIPAGTGVGGAIHLDGNLMDEMLSGGAAWVVGRKMGRPEDLGRIEGNGRNEF 176
Query: 530 ADPSKVSMRAKKRGLPQV 547
A PSKVS +AK+R + Q+
Sbjct: 177 AAPSKVSAKAKQRMINQL 194
>gi|307611038|emb|CBX00677.1| hypothetical protein LPW_23831 [Legionella pneumophila 130b]
Length = 476
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 165/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY A+ + + + G + V IH GSRG GHQ+ TD L M +
Sbjct: 200 SGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLGHQIGTDYLRSMVIESQH 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA INS + + + ++ H + + F T DL
Sbjct: 259 YGIKLADRELACAPINSKLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H VDGK+K L VHRKG+TRA P HP +P GQPV+IGG
Sbjct: 319 ----IYDVSHNTCKEEFHEVDGKKKRLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G + ++F S CHGAGRA+SR ++ + + +++++KL QGI IR S
Sbjct: 375 SMGTGSYVLAGVKGSEHKSFSSACHGAGRAMSRHQAMKKWNGKDIVDKLAQQGILIRSGS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +VD G++KK KL P+ +KG
Sbjct: 435 YRGVAEEAPGAYKDVHSIVDAAEMSGLAKKVAKLIPIICVKG 476
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP GVGS+ I + + L++ + G W++++GY A D E E+ G + A
Sbjct: 119 LADALFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGA 178
Query: 531 DPSKVSMRAKKR 542
P VS +AKKR
Sbjct: 179 IPDFVSEQAKKR 190
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++F HIP GVGS+ I + + L++ + G W++++GY A D E E
Sbjct: 119 LADALFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIE 170
>gi|406989269|gb|EKE09064.1| hypothetical protein ACD_16C00216G0003 [uncultured bacterium]
Length = 477
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/279 (43%), Positives = 168/279 (60%), Gaps = 4/279 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY + A +GI+ +GQ+ V IH GSRG GHQ+ T+ L +M
Sbjct: 200 SGNHYLEVQEVQKIYQENIAELLGIK-LGQIVVSIHCGSRGLGHQIGTEYLREMLLKADE 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTT-PDDLDMH 252
I+ D +LACA INS + + A + + ++ K +N T P +
Sbjct: 259 YKIKLPDWELACAPINSPLGQQYLGAMRAGINCALANRQILTHLLRKVWNETFPQQSVLK 318
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++YDVSHN K EE+ ++G K L VHRKG+TRAF P H +P +Q TGQPV IGG+MG
Sbjct: 319 LLYDVSHNTCKAEEYHLEGHVKKLYVHRKGATRAFGPGHTDLPPAFQKTGQPVFIGGSMG 378
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY+LTG +F S CHGAGRALSR ++ R ++++ LE +GI IR S +
Sbjct: 379 TESYILTGMSGVEHRSFSSACHGAGRALSRHQALRQWKGKQLVKDLEERGILIRSPSYRG 438
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EEAP +YKNVT VV+ G+++K KL P+ IKG
Sbjct: 439 VAEEAPLAYKNVTAVVNVTEQAGLAQKVAKLVPLICIKG 477
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA + IP G+G G I +L+E L G W++ +GY ED E EE G M
Sbjct: 117 ESLAHELSRAIPAGMGRGGRIKFTFSELDEMLVGGAKWAIAQGYGEMEDLERIEEKGCMQ 176
Query: 529 NADPSKVSMRAKKR 542
+ P VS +AKKR
Sbjct: 177 GSIPQNVSDKAKKR 190
>gi|347539173|ref|YP_004846598.1| hypothetical protein NH8B_1362 [Pseudogulbenkiania sp. NH8B]
gi|345642351|dbj|BAK76184.1| protein of unknown function [Pseudogulbenkiania sp. NH8B]
Length = 477
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 164/278 (58%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD I+D+ AA G+ VGQV V IH GSRG GHQ+ TD L+ + K+
Sbjct: 201 SGNHYLEVQVVDRIHDEAAAVAFGLR-VGQVLVSIHCGSRGLGHQIGTDYLLLLAKSAAS 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
+ DR+LACA I S + + N+ + L I A ++ +
Sbjct: 260 LGLTLPDRELACAPIRSEAGQHYLGAMNSAINCALANRQILAALTRRVLARYWPSARLDT 319
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
++DVSHN K E H V+G+++TL VHRKG+TRAF H +P Y+ GQPV+IGG+MGT
Sbjct: 320 LFDVSHNTCKVERHRVEGRERTLYVHRKGATRAFGAGHAGLPDAYRAVGQPVIIGGSMGT 379
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L G G F S HGAGRA+SR ++ + +++L+ L +QGI IR S +
Sbjct: 380 GSYILAGNPPGQNHAFASASHGAGRAMSRHQALKFWHGRQLLDDLAAQGILIRTGSLRGA 439
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V V + A G++++ LRP IKG
Sbjct: 440 AEEAPGAYKDVDRVAEVTEAAGLARRVAFLRPKICIKG 477
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR W + LA S+F IP GVG +G + ++ R+L++ + G W++ +G+
Sbjct: 104 LRTDLSWEQLAPQRHHLADSLFREIPAGVGEEGRLRLSVRELDQVMRQGAHWAVAQGFGP 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
A+D + EE G + A+P VS AKKR L ++
Sbjct: 164 ADDLPYIEERGCVGGAEPGWVSDLAKKRQLGEM 196
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA S+F IP GVG +G + ++ R+L++ + G W++ +G+ A+D + E
Sbjct: 120 LADSLFREIPAGVGEEGRLRLSVRELDQVMRQGAHWAVAQGFGPADDLPYIE 171
>gi|253701866|ref|YP_003023055.1| hypothetical protein GM21_3271 [Geobacter sp. M21]
gi|251776716|gb|ACT19297.1| protein of unknown function UPF0027 [Geobacter sp. M21]
Length = 486
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/297 (41%), Positives = 182/297 (61%), Gaps = 14/297 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQV 181
RG+ +Q+ T +GNHY EIQ+V + + D A+ G+ V QV +M H GSRGFGHQV
Sbjct: 192 RGY-NQLGTLGSGNHYCEIQVVKPENVMDAELAAAFGLTMVPNQVVIMFHCGSRGFGHQV 250
Query: 182 ATDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
ATD L M R I+ DR+LACA +S + +A+ + + +H I
Sbjct: 251 ATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAFANRQVILHRI 310
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+ F+ F+ +PD+L + ++YDV+HN AK E H V+G +K LLVHRKGSTRAF P +
Sbjct: 311 REVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGSTRAFGPGAAGL 370
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y TGQPV+IGG+M T SY+L G + G + F +T HG+GR +SR ++++N ++
Sbjct: 371 PGCYAKTGQPVIIGGSMETGSYLLAGMQSG-ADAFFTTAHGSGRTMSRHEAKKNFRGDKL 429
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++E++GI +R S + EEA +YKN+ +VV+ G+SK+ +L P+ IKG
Sbjct: 430 QREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVPIGNIKG 486
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+L +F IP GVG G + + D ++ G W L+ G+ ED + EE G
Sbjct: 118 LHQLVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCF 177
Query: 528 LNADPSKVSMRAKKRGLPQVSDRRGTGSSKYC 559
AD S +S +A +RG Q+ G+G + YC
Sbjct: 178 SGADASHISDKAVERGYNQLGT-LGSG-NHYC 207
>gi|148263461|ref|YP_001230167.1| hypothetical protein Gura_1393 [Geobacter uraniireducens Rf4]
gi|146396961|gb|ABQ25594.1| protein of unknown function UPF0027 [Geobacter uraniireducens Rf4]
Length = 485
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/296 (42%), Positives = 179/296 (60%), Gaps = 13/296 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ QV T +GNHY EIQ+ + IYD+ A G QV +M H GSRGFGHQVA
Sbjct: 192 RGY-DQVGTLGSGNHYCEIQVARPENIYDEETARAFGFTIPNQVAIMFHCGSRGFGHQVA 250
Query: 183 TDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD L M+R I+ DR+L+CA +S + + + + + +H I
Sbjct: 251 TDYLQIFLGVMERKYGIKVLDRELSCAPFHSPEGQDYFAAMKCAVNMAFANRQVILHRIR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F+ F+ P++L M ++YDV+HN AK E+H V GK++ +L+HRKGSTRAF P IP
Sbjct: 311 EVFSAVFHKDPEELGMRMVYDVAHNTAKLEKHTVAGKKREVLIHRKGSTRAFGPGMEGIP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ TGQPV+IGG+M T SY+L G + G ETF ST HG+GR +SR ++++ + Q++
Sbjct: 371 DCYRETGQPVIIGGSMETGSYLLAGMKSG-AETFFSTAHGSGRTMSRHQAKKMIRGQKLQ 429
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+E +GI +R S + EEA +YK++ DVV G+SK+ +L PV IKG
Sbjct: 430 RDMEERGIYVRTDSWGGLAEEAGAAYKDIDDVVAATELAGLSKRVVRLVPVGNIKG 485
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E K H L ++F IP GVG G + + + +E G W L+ GY W ED E
Sbjct: 111 YDEVKPHLRELVDALFYRIPTGVGCTGFVRCSQDEFRNVVEQGSRWCLKHGYAWPEDLEM 170
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSSKYC 559
EE G AD SKVS +A +RG QV G+G + YC
Sbjct: 171 TEEGGCFPGADASKVSHKAIERGYDQVGT-LGSG-NHYC 207
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F IP GVG G + + + +E G W L+ GY W ED E E
Sbjct: 121 LVDALFYRIPTGVGCTGFVRCSQDEFRNVVEQGSRWCLKHGYAWPEDLEMTE 172
>gi|82702032|ref|YP_411598.1| hypothetical protein Nmul_A0903 [Nitrosospira multiformis ATCC
25196]
gi|82410097|gb|ABB74206.1| Protein of unknown function UPF0027 [Nitrosospira multiformis ATCC
25196]
Length = 475
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 165/282 (58%), Gaps = 13/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD I+D A +G+ + GQ+ + IH GSRG GHQ+ TD LV + KA R
Sbjct: 201 SGNHYLEVQVVDRIFDPGVALALGLHE-GQILISIHCGSRGLGHQIGTDYLVLLAKAASR 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA + S + + + N + + H+ F + +
Sbjct: 260 SGIHLPDRELACAPVKSPEGQQYIGAMNAAINCALANRQILTHLTRSVFTEIYPQA---- 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++ ++DVSHN K E H +DG+ + L VHRKG+TRAF P HP++P Y+ GQPV+IGG
Sbjct: 316 ELETLFDVSHNTCKAETHQIDGESRLLYVHRKGATRAFGPGHPMLPERYRQVGQPVVIGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G + F S+ HGAGRA+SR ++ + ++++L QGI I S
Sbjct: 376 SMGTGSYILVGDSE--NPAFASSSHGAGRAMSRHQALARWKGRALVDELAQQGILIHTRS 433
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V V + G++++ LRP +KG
Sbjct: 434 MRGVAEEAPGAYKDVDLVAEATEEAGLARRVAFLRPKVCVKG 475
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + EHF +L +++F IP GVG +G I +N L++ + G W++++GY
Sbjct: 104 LRSNLNLEDAVEHFPQLGKALFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQGYGT 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKR 542
D ++ EE GR+ A P VS AKKR
Sbjct: 164 PADLDYVEEQGRVAGAIPENVSELAKKR 191
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMF 476
+L +++F IP GVG +G I +N L++ + G W++++GY D ++ E +
Sbjct: 119 QLGKALFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQGYGTPADLDYVEEQGR--- 175
Query: 477 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE 516
G IP N +L + + G +L G + E
Sbjct: 176 --------VAGAIPENVSELAKKRQRGEMGTLGSGNHYLE 207
>gi|303246720|ref|ZP_07332998.1| protein of unknown function UPF0027 [Desulfovibrio fructosovorans
JJ]
gi|302492060|gb|EFL51938.1| protein of unknown function UPF0027 [Desulfovibrio fructosovorans
JJ]
Length = 476
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 164/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V+EI D AA+ G+ QV V IH GSRG GHQVATD + M +A R
Sbjct: 200 SGNHYLEVQRVEEICDARAAAAFGLRP-DQVAVSIHCGSRGLGHQVATDHMAIMRQAAPR 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR LACA I S + + + + H++ + FA F
Sbjct: 259 HGISLPDRDLACAPIASPEGARYLGAMRAAINCALAGRQVITHLVREVFAALFPGC---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDVSHN K E H + L VHRKG+TRA P HP +P ++ GQPVL+GG
Sbjct: 315 HLRLLYDVSHNTCKVERHPTRRGNQQLHVHRKGATRALGPSHPDLPQAFRGVGQPVLVGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L+GT+ F S CHGAGR L R ++ + + VL L ++GIS+R
Sbjct: 375 SMGTASYILSGTDASPPAAFASACHGAGRTLGRKQAVKRFPGRGVLAALTAKGISLRAHD 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EEAP++YK++ +V+ H +G++ KT +LRP+A IKG
Sbjct: 435 LRGLGEEAPQAYKDIEEVIQAAHGLGLAVKTARLRPLACIKG 476
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA ++F IP G+G G + ++ RD++ L G W++ EGY A D CEE GRM
Sbjct: 117 EVLADALFARIPAGLGGTGGLRLSERDMDRMLAGGAVWAVTEGYGEAGDLTRCEEGGRME 176
Query: 529 NADPSKVSMRAKKR 542
ADP VS RA++R
Sbjct: 177 GADPEAVSSRARER 190
>gi|336322806|ref|YP_004602773.1| hypothetical protein Flexsi_0518 [Flexistipes sinusarabici DSM
4947]
gi|336106387|gb|AEI14205.1| protein of unknown function UPF0027 [Flexistipes sinusarabici DSM
4947]
Length = 478
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 174/282 (61%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI VD+I+DK A+ G+E+ G++ +MIHSGSRG GHQ+ TD L E+ +++
Sbjct: 198 SGNHFLEIGSVDKIFDKKTANFWGLEE-GKLTLMIHSGSRGLGHQICTDFLKVFERTLEK 256
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I D+QL+CA ++S++++ + A F + M++ A A F ++L
Sbjct: 257 YKISVPDKQLSCAPVDSDESRKYFSAMACAANFAWANRQILMNLAVSAVADYFKVKAENL 316
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNI K E + K + VHRKG+TRA PP H +P + +GQPV+I G
Sbjct: 317 NYRLIYDVAHNIVKKEFFDLKSKNCEIYVHRKGATRALPPGHKDLPEHLKKSGQPVIIPG 376
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SY+L+G + + +F S CHGAGR LSR K+ + + + +L+ + I +
Sbjct: 377 DMGRYSYILSGVKNAPELSFNSACHGAGRVLSRKKAVKTAGDRNIAIELKDKNIYVMSRG 436
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + EE P++YK+V +VVD H + I++KT +++P+ VIKG
Sbjct: 437 KKTLKEEMPDAYKDVANVVDVVHNLKIAEKTARIKPICVIKG 478
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L + ++ IP GVG G I ++ +++++ L+ G W++ GY D + E +G +
Sbjct: 115 ESLVKHLYKKIPCGVGEGGNIKLSNKEMKKLLQEGSKWAVNSGYGNESDLYNTESFGCLS 174
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGT-GSSKYCHGVGSI 565
ADPS+VS RA +RG SD+ GT GS + +GS+
Sbjct: 175 EADPSQVSKRAMERG----SDQCGTLGSGNHFLEIGSV 208
>gi|54295045|ref|YP_127460.1| hypothetical protein lpl2125 [Legionella pneumophila str. Lens]
gi|53754877|emb|CAH16365.1| hypothetical protein lpl2125 [Legionella pneumophila str. Lens]
Length = 476
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 165/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY A+ + + + G + V IH GSRG GHQ+ TD L M +
Sbjct: 200 SGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLGHQIGTDYLRSMVIESQH 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I+S + + + ++ H + + F T DL
Sbjct: 259 YGIKLADRELACAPIHSKLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H VDGK+K L VHRKG+TRA P HP +P GQPV+IGG
Sbjct: 319 ----IYDVSHNTCKEEFHEVDGKKKRLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G + ++F S CHGAGRA+SR ++ + + +++++KL QGI IR S
Sbjct: 375 SMGTGSYVLAGVKGSEHKSFSSACHGAGRAMSRHQAMKKWNGKDIVDKLAQQGILIRSGS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +VD G++KK KL P+ +KG
Sbjct: 435 YRGVAEEAPGAYKDVHSIVDAAEMSGLAKKVAKLIPIICVKG 476
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP GVGS+ I + + L++ + G W++++GY A D E E+ G + A
Sbjct: 119 LADALFAHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGA 178
Query: 531 DPSKVSMRAKKR 542
P VS +AKKR
Sbjct: 179 IPDCVSEQAKKR 190
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++F HIP GVGS+ I + + L++ + G W++++GY A D E E
Sbjct: 119 LADALFAHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIE 170
>gi|378778102|ref|YP_005186540.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364508917|gb|AEW52441.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 477
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 165/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY A+ + + + G + V IH GSRG GHQ+ TD L M +
Sbjct: 201 SGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLGHQIGTDYLRSMVIESQH 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I+S + + + ++ H + + F T DL
Sbjct: 260 YGIKLADRELACAPIHSKLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDL 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H VDGK+K L VHRKG+TRA P HP +P GQPV+IGG
Sbjct: 320 ----IYDVSHNTCKEEFHEVDGKKKRLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G + ++F S CHGAGRA+SR ++ + + +++++KL QGI IR S
Sbjct: 376 SMGTGSYVLAGVKGSEHKSFSSACHGAGRAMSRHQAMKKWNGKDIVDKLAQQGILIRSGS 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +VD G++KK KL P+ +KG
Sbjct: 436 YRGVAEEAPGAYKDVHSIVDAAEMSGLAKKVAKLIPIICVKG 477
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP GVGS+G I + + L++ + G W++++GY A D E E+ G + A
Sbjct: 120 LADALFTHIPAGVGSRGGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGA 179
Query: 531 DPSKVSMRAKKR 542
P VS +AKKR
Sbjct: 180 IPDFVSEQAKKR 191
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++F HIP GVGS+G I + + L++ + G W++++GY A D E E
Sbjct: 120 LADALFTHIPAGVGSRGGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIE 171
>gi|222055414|ref|YP_002537776.1| hypothetical protein Geob_2321 [Geobacter daltonii FRC-32]
gi|221564703|gb|ACM20675.1| protein of unknown function UPF0027 [Geobacter daltonii FRC-32]
Length = 485
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 182/296 (61%), Gaps = 13/296 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ QV T +GNHY EIQ+ + I D+ A G+ Q+ +M H GSRGFGHQVA
Sbjct: 192 RGY-DQVGTLGSGNHYCEIQVAKPENIIDESLARAFGLTMPNQIAIMFHCGSRGFGHQVA 250
Query: 183 TDALVQMEKAMKRD-NIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD L M+R ++ DR+L+CA S + + + + + +H I
Sbjct: 251 TDYLQLFLSVMERKYGLKKLDRELSCAPFQSPEGQDYFAAMKCAVNMAFANRQVILHRIR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F+ F+ +P+DL M+++YDV+HN AK E+H+++GK++ +L+HRKGSTRAF P +P
Sbjct: 311 EVFSSIFHKSPEDLGMNMVYDVAHNTAKIEKHVINGKKRDVLIHRKGSTRAFGPGMEGLP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ TGQPV+IGG+M T SY+L G E G ETF ST HG+GR +SR ++++ Q++
Sbjct: 371 DCYRETGQPVIIGGSMETGSYLLAGMESG-AETFFSTAHGSGRTMSRHQAKKLGKGQKLQ 429
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+E +GI +R S + EEA +YK++ +VV+ G+SK+ +L P+ IKG
Sbjct: 430 RDMEERGIYVRTDSWGGLAEEAGAAYKDIDEVVEATELAGLSKRVARLLPIGNIKG 485
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E K H RL ++F +P GVG G + + + + LE G W L+ GY W D E E
Sbjct: 113 EVKPHIHRLVDALFYRVPSGVGCTGFVKCSQTEFRDILEQGSRWCLKNGYAWPLDLEMTE 172
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSSKYC 559
E G AD SKVS +A +RG QV G+G + YC
Sbjct: 173 EEGCFPGADASKVSHKAIERGYDQVGT-LGSG-NHYC 207
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
RL ++F +P GVG G + + + + LE G W L+ GY W D E E
Sbjct: 120 RLVDALFYRVPSGVGCTGFVKCSQTEFRDILEQGSRWCLKNGYAWPLDLEMTE 172
>gi|148359741|ref|YP_001250948.1| replication factor C subunit [Legionella pneumophila str. Corby]
gi|296107785|ref|YP_003619486.1| replication factor C subunit [Legionella pneumophila 2300/99 Alcoy]
gi|148281514|gb|ABQ55602.1| replication factor C subunit (activator I) [Legionella pneumophila
str. Corby]
gi|295649687|gb|ADG25534.1| replication factor C subunit [Legionella pneumophila 2300/99 Alcoy]
Length = 476
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 165/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY A+ + + + G + V IH GSRG GHQ+ TD L M +
Sbjct: 200 SGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLGHQIGTDYLRSMVIESQH 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I+S + + + ++ H + + F T DL
Sbjct: 259 YGIKLADRELACAPIHSKLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H +DGK+K L VHRKG+TRA P HP +P GQPV+IGG
Sbjct: 319 ----IYDVSHNTCKEEFHEIDGKKKRLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G + ++F S CHGAGRA+SR ++ + + +++++KL QGI IR S
Sbjct: 375 SMGTGSYVLAGVKGSEHKSFSSACHGAGRAMSRHQAMKKWNGKDIVDKLAQQGILIRSGS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +VD G++KK KL P+ +KG
Sbjct: 435 YRGVAEEAPGAYKDVHSIVDAAEMSGLAKKVAKLIPIICVKG 476
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP GVGS+ I + + L++ + G W++++GY D E E+ G + A
Sbjct: 119 LADALFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEVADLERIEDRGCVEGA 178
Query: 531 DPSKVSMRAKKR 542
P VS +AKKR
Sbjct: 179 IPDFVSEQAKKR 190
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++F HIP GVGS+ I + + L++ + G W++++GY D E E
Sbjct: 119 LADALFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEVADLERIE 170
>gi|54298094|ref|YP_124463.1| hypothetical protein lpp2151 [Legionella pneumophila str. Paris]
gi|397667860|ref|YP_006509397.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
gi|53751879|emb|CAH13303.1| hypothetical protein lpp2151 [Legionella pneumophila str. Paris]
gi|395131271|emb|CCD09533.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
Length = 476
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 165/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY A+ + + + G + V IH GSRG GHQ+ TD L M +
Sbjct: 200 SGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLGHQIGTDYLRSMVIESQH 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I+S + + + ++ H + + F T DL
Sbjct: 259 YGIKLADRELACAPIHSKLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H +DGK+K L VHRKG+TRA P HP +P GQPV+IGG
Sbjct: 319 ----IYDVSHNTCKEEFHEIDGKKKRLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G + ++F S CHGAGRA+SR ++ + + +++++KL QGI IR S
Sbjct: 375 SMGTGSYVLAGVKGSEHKSFSSACHGAGRAMSRHQAMKKWNGKDIVDKLAQQGILIRSGS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +VD G++KK KL P+ +KG
Sbjct: 435 YRGVAEEAPGAYKDVHSIVDAAEMSGLAKKVAKLIPIICVKG 476
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP GVGS+ I + + L++ + G W++++GY D E E+ G + A
Sbjct: 119 LADALFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEVADLERIEDRGCVEGA 178
Query: 531 DPSKVSMRAKKR 542
P VS +AKKR
Sbjct: 179 IPDFVSEQAKKR 190
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++F HIP GVGS+ I + + L++ + G W++++GY D E E
Sbjct: 119 LADALFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEVADLERIE 170
>gi|419759784|ref|ZP_14286071.1| RtcB protein [Thermosipho africanus H17ap60334]
gi|407515161|gb|EKF49941.1| RtcB protein [Thermosipho africanus H17ap60334]
Length = 445
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 173/282 (61%), Gaps = 24/282 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ V+EIYD+ A+ +G+ + +MIH+GSRGFGHQ+ATD + K M+
Sbjct: 182 AGNHFIEIQKVEEIYDEKKANILGLYK-NHIVIMIHTGSRGFGHQIATDYI----KLMRN 236
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ + D+QLA A +S+ + + N + + H I F+K F+
Sbjct: 237 LHNDLPDKQLAYAYFDSDLGQKYYSAMNCAANYAFSNRQIITHYIRKVFSK-FSK----- 290
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HNIAK E+H + L+VHRKG+TRAF P+HP IP Y+ GQPVLI G
Sbjct: 291 -VEIVYDVAHNIAKVEKH----DNQKLIVHRKGATRAFGPYHPDIPEKYKSIGQPVLIPG 345
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SYV+ GT + F ST HGAGR L R ++ + L+ +VL+ L+ +GI ++ S
Sbjct: 346 NMGTASYVMVGTNENF--AFSSTAHGAGRVLGRRQALKKLNLNQVLSNLQKRGIIVKSKS 403
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAP++YK + V++ + +SKK KL P+ VIKG
Sbjct: 404 KKTILEEAPDAYKEIDRVIEIVDKLNLSKKVAKLIPLGVIKG 445
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ + K++ E + ++D IPVGVG+ + + ++ +E G +++ GY +ED E+
Sbjct: 92 YNDFKKYIESTIKELYDVIPVGVGATSK-KFDKKSFKKIIEEGAKRAIKMGYGLSEDLEY 150
Query: 521 CEEYGRMLNADPSKVSMRAKKRG 543
E++G + A +S A +RG
Sbjct: 151 IEDFGSISPASMEDISKTAYERG 173
>gi|220916117|ref|YP_002491421.1| hypothetical protein A2cp1_1004 [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953971|gb|ACL64355.1| protein of unknown function UPF0027 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 488
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 213/444 (47%), Gaps = 71/444 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH---SVP-----------------------------S 64
++Q+ANVA LPGI+ S+ +PDVH P
Sbjct: 47 LQQVANVAHLPGILRWSLAMPDVHWGYGFPLGGVAAVDAEHGAVSPGGVGYDINCGVRVV 106
Query: 65 TQWLSDNTMR------SSNIWKRSPLTLGAGNHYAEI--QIVDEIYD---KWAASKMGIE 113
T L +R ++ I++ P +GA + + +DE+ +WA ++ G
Sbjct: 107 TTRLDAEALRPRLHALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAVAR-GFR 165
Query: 114 DVGQVCVMIHSGSRGFGHQVAT-----------------AGNHYAEIQIVDEIYDKWAAS 156
G R G A +GNH+ E+ V I+D AA
Sbjct: 166 AAADDADRCEEGGRLAGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAE 225
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR---DNIETNDRQLACARINSN 213
G+ GQ+ V IHSGSRG G+QV +AL ++ + D DRQLACA + S
Sbjct: 226 AFGLFP-GQLVVQIHSGSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSP 284
Query: 214 KNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 267
+ + + + + + A + + +L ++YDV HN+AK E+H
Sbjct: 285 EGRRYLAAMQAAANFAWANRQVMTGLAVRALLETLGVSDRELGARLLYDVCHNVAKLEDH 344
Query: 268 MVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQE 327
+VDG + +LVHRKG+TRAF P P +P Y+ GQPVLI G MG SYVL GTEK M++
Sbjct: 345 LVDGGVRRVLVHRKGATRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEKAMRD 404
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDV 387
TFGS+CHGAGR LSR ++ R + + +L +GI + K + EE E+YK+V V
Sbjct: 405 TFGSSCHGAGRLLSRGEALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVAQV 464
Query: 388 VDTCHAVGISKKTFKLRPVAVIKG 411
V GIS+ +L P+AV+KG
Sbjct: 465 VAVMDGAGISRLVARLDPLAVVKG 488
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGY-IWAEDKEHCE 522
+ LA ++ +P GVG+ IP + +R+L+E L G W++ G+ A+D + CE
Sbjct: 116 RPRLHALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAVARGFRAAADDADRCE 175
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
E GR+ ADP+ VS RA++RG SD+ GT
Sbjct: 176 EGGRLAGADPAAVSARARERG----SDQLGT 202
>gi|217077208|ref|YP_002334926.1| RtcB protein [Thermosipho africanus TCF52B]
gi|217037063|gb|ACJ75585.1| RtcB protein [Thermosipho africanus TCF52B]
Length = 445
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 173/282 (61%), Gaps = 24/282 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ V+EIYD+ A+ +G+ + +MIH+GSRGFGHQ+ATD + K M+
Sbjct: 182 AGNHFIEIQKVEEIYDEKKANILGLYK-NHIVIMIHTGSRGFGHQIATDYI----KLMRN 236
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ + D+QLA A +S+ + + N + + H I F+K F+
Sbjct: 237 LHNDLPDKQLAYAYFDSDLGQKYYSAMNCAANYAFSNRQIITHYIRKVFSK-FSK----- 290
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HNIAK E+H + L+VHRKG+TRAF P+HP IP Y+ GQPVLI G
Sbjct: 291 -VEIVYDVAHNIAKVEKH----DNQKLIVHRKGATRAFGPYHPDIPEKYKSIGQPVLIPG 345
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SYV+ GT + F ST HGAGR L R ++ + L+ +VL+ L+ +GI ++ S
Sbjct: 346 NMGTASYVMVGTNENF--AFSSTAHGAGRVLGRRQALKKLNLNQVLSNLQKRGIIVKSKS 403
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EEAP++YK + VV+ + +SKK KL P+ VIKG
Sbjct: 404 KKTILEEAPDAYKEIDRVVEIVDKLNLSKKVAKLIPLGVIKG 445
>gi|212212438|ref|YP_002303374.1| RtcB [Coxiella burnetii CbuG_Q212]
gi|212010848|gb|ACJ18229.1| RtcB [Coxiella burnetii CbuG_Q212]
Length = 478
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 170/283 (60%), Gaps = 12/283 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+VD+IYDK AA G+E QV + IH GSRG GHQ+ +D LV + K R
Sbjct: 201 SGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRGLGHQIGSDYLVALAKEASR 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LACA I S + + + N + L H+ +AF K + +
Sbjct: 260 LGVTLPDRELACAPIKSAEGQRYLGAMNAGINCALENRQLLTHLTREAFGKIIPS----V 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKT-LLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+ +YDVSHN K EEH+++G+QK L +HRKG+TRAF P +P +P Y+ GQPV+IG
Sbjct: 316 FIETLYDVSHNTCKQEEHLINGQQKRRLYIHRKGATRAFGPGNPNLPAPYRTVGQPVIIG 375
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L G + F S HGAGR +SR ++ + +++++ L S+GI IR
Sbjct: 376 GSMGTGSYLLAGNPETENHAFASASHGAGRLMSRRQASKKWSGRQLMDDLASEGIIIRSR 435
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEA +YK+V +V ++ G++++ L+P +KG
Sbjct: 436 IMRGVAEEALGAYKDVDEVAESTEKAGLARRVVFLKPKICVKG 478
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR +W E K E +A ++ IP GVG G I + L+E L G W+++ G+
Sbjct: 104 LRTNLVWDEFKGFREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGI 163
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKR 542
ED EE G+M A P VS AKKR
Sbjct: 164 REDLSFVEENGQMKGAIPDNVSELAKKR 191
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
E +A ++ IP GVG G I + L+E L G W+++ G+ ED E Q
Sbjct: 116 FREAVADELYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQ 175
Query: 474 SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE--------DKEHCEEYG 525
KG IP N +L + + +L G + E DKE + YG
Sbjct: 176 -----------MKGAIPDNVSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYG 224
Query: 526 RMLNADPSKVSMRAKKRGL 544
L D +S+ RGL
Sbjct: 225 --LERDQVLISIHCGSRGL 241
>gi|197121420|ref|YP_002133371.1| hypothetical protein AnaeK_1007 [Anaeromyxobacter sp. K]
gi|196171269|gb|ACG72242.1| protein of unknown function UPF0027 [Anaeromyxobacter sp. K]
Length = 487
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 213/444 (47%), Gaps = 71/444 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH---SVP-----------------------------S 64
++Q+ANVA LPGI+ S+ +PDVH P
Sbjct: 46 LQQVANVAHLPGILRWSLAMPDVHWGYGFPIGGVAAVDGEHGAVSPGGVGYDINCGVRVV 105
Query: 65 TQWLSDNTMR------SSNIWKRSPLTLGAGNHYAEI--QIVDEIYD---KWAASKMGIE 113
T L +R ++ I++ P +GA + + +DE+ +WA ++ G
Sbjct: 106 TTGLDAEALRPRLHALAARIYRDVPTGVGASAAIPRLSPRELDEVLAEGARWAVAR-GFR 164
Query: 114 DVGQVCVMIHSGSRGFGHQVAT-----------------AGNHYAEIQIVDEIYDKWAAS 156
G R G A +GNH+ E+ V I+D AA
Sbjct: 165 AAADDADRCEEGGRLAGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAE 224
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR---DNIETNDRQLACARINSN 213
G+ GQ+ V IHSGSRG G+QV +AL ++ + D DRQLACA + S
Sbjct: 225 AFGLFP-GQLVVQIHSGSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSP 283
Query: 214 KNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 267
+ + + + + + A + + +L ++YDV HN+AK E+H
Sbjct: 284 EGRRYLAAMQAAANFAWANRQVMTGLAVRALLETLGVSDRELGARLLYDVCHNVAKLEDH 343
Query: 268 MVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQE 327
+VDG + +LVHRKG+TRAF P P +P Y+ GQPVLI G MG SYVL GTEK M++
Sbjct: 344 LVDGGVRRVLVHRKGATRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEKAMRD 403
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDV 387
TFGS+CHGAGR LSR ++ R + + +L +GI + K + EE E+YK+V V
Sbjct: 404 TFGSSCHGAGRLLSRGEALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVARV 463
Query: 388 VDTCHAVGISKKTFKLRPVAVIKG 411
V GIS+ +L P+AV+KG
Sbjct: 464 VAVMDGAGISRLVARLDPLAVVKG 487
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGY-IWAEDKEHCE 522
+ LA ++ +P GVG+ IP ++ R+L+E L G W++ G+ A+D + CE
Sbjct: 115 RPRLHALAARIYRDVPTGVGASAAIPRLSPRELDEVLAEGARWAVARGFRAAADDADRCE 174
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
E GR+ ADP+ VS RA++RG SD+ GT
Sbjct: 175 EGGRLAGADPAAVSARARERG----SDQLGT 201
>gi|150020767|ref|YP_001306121.1| hypothetical protein Tmel_0875 [Thermosipho melanesiensis BI429]
gi|149793288|gb|ABR30736.1| protein of unknown function UPF0027 [Thermosipho melanesiensis
BI429]
Length = 443
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/284 (45%), Positives = 169/284 (59%), Gaps = 28/284 (9%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ V EIYDK A+ +G+ + Q+ VMIH+GSRGFGHQVATD + M
Sbjct: 180 SGNHFIEIQKVVEIYDKEIANTLGLFE-NQITVMIHTGSRGFGHQVATDYIKLMR----- 233
Query: 196 DNIETN--DRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD 247
NI+ N D+QL A S + + A F + H I AF+ N +
Sbjct: 234 -NIDKNLPDKQLVYAPFYSKLGQKYFSAMNCAANFAFANRQIITHYIRKAFS---NFSRL 289
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
DL IYDV+HNIAK E H + ++VHRKG+TRAF P+ +P Y+ GQPV+I
Sbjct: 290 DL----IYDVAHNIAKVEIH----DNQKVVVHRKGATRAFGPNQKELPEKYKKIGQPVII 341
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G MGT SYVL GT K F ST HGAGR L R ++ +NL EVL+ LE +GI ++
Sbjct: 342 PGDMGTSSYVLVGTNKNF--AFSSTAHGAGRVLGRRQALKNLKINEVLSNLEKKGIILKS 399
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S K+++EEAPE YKN+ VV+ + +SKK KL P+ VIKG
Sbjct: 400 KSKKIIIEEAPEVYKNIDKVVEIVDKLKLSKKVAKLIPLGVIKG 443
>gi|52842414|ref|YP_096213.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52629525|gb|AAU28266.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 477
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/281 (41%), Positives = 164/281 (58%), Gaps = 11/281 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY A+ + + + G + V IH GSRG GHQ+ TD L M +
Sbjct: 201 SGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLGHQIGTDYLRSMVIESQH 259
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DR+LACA I+S + + + ++ H + + F T DL
Sbjct: 260 YGIKLADRELACAPIHSKLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDL 319
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H VDGK+K L VHRKG+TRA P HP +P GQPV+IGG
Sbjct: 320 ----IYDVSHNTCKEEFHEVDGKKKRLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G + ++F S CHGAGRA+SR ++ + + +++++KL QGI IR S
Sbjct: 376 SMGTGSYVLAGVKGSEHKSFSSACHGAGRAMSRHQAMKKWNGKDIVDKLAQQGILIRSGS 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ V EEAP +YK+V +VD G++KK KL P+ +K
Sbjct: 436 YRGVAEEAPGAYKDVHSIVDAAEMSGLAKKVAKLIPIICVK 476
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP GVGS+G I + + L++ + G W++++GY A D E E+ G + A
Sbjct: 120 LADALFTHIPAGVGSRGGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGA 179
Query: 531 DPSKVSMRAKKR 542
P VS +AKKR
Sbjct: 180 IPDFVSEQAKKR 191
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++F HIP GVGS+G I + + L++ + G W++++GY A D E E
Sbjct: 120 LADALFTHIPAGVGSRGGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIE 171
>gi|336252162|ref|YP_004595269.1| hypothetical protein Halxa_0751 [Halopiger xanaduensis SH-6]
gi|335336151|gb|AEH35390.1| protein of unknown function UPF0027 [Halopiger xanaduensis SH-6]
Length = 488
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 166/283 (58%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDVFDDDVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + +++
Sbjct: 266 LLNQLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DMH++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 DMHLLYDVAHNIAKKETHTVDGEERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIRVA 368
+MG SYVL G E M TFGST HGAGR +SR +++ +V +LE Q I ++
Sbjct: 386 SMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDVQQQLEEQDRIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 488
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F +IP G+G GI+ +EE LE G+DW+L G+
Sbjct: 110 MRTNLTYDELQGREEELVDSLFANIPSGLGGGGIVEAGVDTVEEILERGVDWALENGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED HCE+ G AD KVS +AK RG Q+
Sbjct: 170 EEDLLHCEDEGMRAGADADKVSQKAKDRGKNQI 202
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L S+F +IP G+G GI+ +EE LE G+DW+L G+ ED H E
Sbjct: 124 EELVDSLFANIPSGLGGGGIVEAGVDTVEEILERGVDWALENGHAVEEDLLHCE 177
>gi|147677917|ref|YP_001212132.1| hypothetical protein PTH_1582 [Pelotomaculum thermopropionicum SI]
gi|146274014|dbj|BAF59763.1| uncharacterized conserved protein [Pelotomaculum thermopropionicum
SI]
Length = 476
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 14/281 (4%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q+V+E+YD A G+E G + VMIH+GSRGFGHQ+ D + A ++
Sbjct: 202 GNHFIELQVVEEVYDPAAGKLFGLEP-GVLTVMIHTGSRGFGHQICVDYSKSLLPAARKY 260
Query: 197 NIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
IE DR LACA +S + + A A F L H + AF F +P++L
Sbjct: 261 GIELPDRGLACAPADSKEGRDYYAAMACAVNFAFANRQLITHDVRCAFGDIFGCSPEELG 320
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
+ +IYDV+HNIAK E H G +K +LVHRKG+TRA PP HP P Y+ TG PVLI G+
Sbjct: 321 LDLIYDVAHNIAKWEVH---GGRK-VLVHRKGATRALPPGHPGNPAVYRRTGHPVLIPGS 376
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYVLTGT ETF S HGAGR LSR + + + ++ + G+ +
Sbjct: 377 MGTASYVLTGT-GAAAETFYSANHGAGRTLSRTAAMKEISREQF--EASMGGVLYNSRNY 433
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K +++EAP +YK++ VV+T A+ +++K +L P+AVIKG
Sbjct: 434 KELLDEAPGAYKDIDQVVETLAAINLTRKVARLLPLAVIKG 474
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 426 IPVGVGSKGIIPMNARDLEEALEMGMDWS-----LREGYIWAEDKEHF-ERLAQSMFDHI 479
+P+G G++ A + A +GMD + L + E K F RL + + +++
Sbjct: 72 LPIG----GVMATAADGVISAGAVGMDINCGVRLLATNIMAKELKIPFLRRLIERIEEYV 127
Query: 480 PVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 538
P GVG KG + EE + G ++ GY ED EE G + AD VS
Sbjct: 128 PTGVGKKGKHKAITGEIFEEVVHTGSRGIVKRGYGRPEDLGRTEEEGCLSGADLGAVSGE 187
Query: 539 AKKRGLPQV 547
A KRG Q+
Sbjct: 188 AYKRGAVQL 196
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+G +VN++L L+ + ++Q+AN A+LPG+V R G+PD+H
Sbjct: 22 MRVDGFVYVNEYLLPLVRRD--------------KSLEQLANAASLPGVVERVCGMPDIH 67
>gi|397664638|ref|YP_006506176.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
gi|395128049|emb|CCD06253.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
Length = 476
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 164/282 (58%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V +IY A+ + + + G + V IH GSRG GHQ+ TD L M +
Sbjct: 200 SGNHYLEVQEVRQIYCSDTAAALNLHE-GDIVVSIHCGSRGLGHQIGTDYLRSMVIESQH 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
++ DR+LACA I+S + + + ++ H + + F T DL
Sbjct: 259 YGVKLADRELACAPIHSKLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDL 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
IYDVSHN K E H VDGK+K L VHRKG+TRA P HP +P GQPV+IGG
Sbjct: 319 ----IYDVSHNTCKEEFHEVDGKKKCLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G + ++F S CHGAGRA+SR ++ + + +++++ L QGI IR S
Sbjct: 375 SMGTGSYVLAGVKGSEHKSFSSACHGAGRAMSRHQAMKKWNGKDIVDNLAQQGILIRSGS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP +YK+V +VD G++KK KL P+ +KG
Sbjct: 435 YRGVAEEAPGAYKDVHSIVDAAEMSGLAKKVAKLIPIICVKG 476
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA S+F HIP GVGS+ I + + L++ + G W++++GY A D E E+ G + A
Sbjct: 119 LADSLFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGA 178
Query: 531 DPSKVSMRAKKR 542
P VS +AKKR
Sbjct: 179 IPDFVSEQAKKR 190
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA S+F HIP GVGS+ I + + L++ + G W++++GY A D E E
Sbjct: 119 LADSLFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIE 170
>gi|320102578|ref|YP_004178169.1| hypothetical protein Isop_1031 [Isosphaera pallida ATCC 43644]
gi|319749860|gb|ADV61620.1| protein of unknown function UPF0027 [Isosphaera pallida ATCC 43644]
Length = 489
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 171/282 (60%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q++D I D AA MG+ + G V V+IHSGSRG G+QV D L A KR
Sbjct: 209 SGNHFLEVQVIDRILDPEAAEVMGLAE-GMVTVLIHSGSRGLGYQVCDDHLAMFRDAPKR 267
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
D QLACA I S + +A+ A + L H + F F + L
Sbjct: 268 YGFTLPDPQLACAPIQSPEGQAYLGAMRAAANYAWCNRQLLTHQAREVFRMVFGKRWESL 327
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HNIAK E H V+G +K + VHRKG+TRAFPP HP +P YQ GQPV+I G
Sbjct: 328 GLDLVYDVAHNIAKFERHHVNGVEKLVCVHRKGATRAFPPGHPEVPPPYQAIGQPVIIPG 387
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S+VL G M +FG++CHGAGR +SR K+ R + + +L++QGI +R
Sbjct: 388 SMGTASWVLAGQAGSMTRSFGTSCHGAGRVMSRTKAVRLAAGRRIDQELDAQGIIVRARG 447
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + EE P +YK+V VV+ VGISKK +LRPV VIKG
Sbjct: 448 HKGLAEEQPAAYKDVDQVVNVVDHVGISKKVARLRPVGVIKG 489
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR W E K L +F+H+P GVG G + L++ +E G + + +G+
Sbjct: 112 LRSNLTWDELKPRIRDLVDKLFEHVPTGVGQSGKYLFDKPKLKKLMEQGSKYVVDKGFGV 171
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ 546
A D + E G + +ADP +VS RA RG Q
Sbjct: 172 ARDLDFTEAGGCLDDADPDRVSDRAYTRGYDQ 203
>gi|345864587|ref|ZP_08816786.1| protein RtcB [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345124284|gb|EGW54165.1| protein RtcB [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 476
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 166/278 (59%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+V ++YD A+ + + G++ + IH GSRG GHQ+ T+ L M K
Sbjct: 200 SGNHYLEVQLVAQVYDAETAAAFDLRE-GEIVISIHCGSRGLGHQIGTEFLKFMATKAKD 258
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I DR+LACA I S +++ A + + ++ + + + +
Sbjct: 259 HGIWLPDRELACAPIESKLGQSYLGAMRAGINCALANRQILTHLTREVCDDVLPGTQLTL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E H +DGK+K L VHRKG+T A P HP +P + GQPV+IGG+MGT
Sbjct: 319 LYDVSHNTCKRETHRIDGKEKQLFVHRKGATLALGPGHPNLPDGLREVGQPVIIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L G ++ + F S CHGAGRA+SR ++ + + V+ +LE++GI IR S + V
Sbjct: 379 ESYILAGVKESEKLAFSSACHGAGRAMSRHQATKRWHGRNVIKELETRGILIRSPSLRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+ VVD H G+S+K +L P+ +KG
Sbjct: 439 AEEAPGAYKDVSRVVDVAHQAGLSRKVARLEPLICVKG 476
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L G + + H + LA + IP G+GS G I + R++++ L G W++++GY
Sbjct: 102 TLHTGLTLDQLRPHKKALADLLAVAIPAGLGSTGTIKLTHREMDQMLIGGAAWAVQQGYG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
D EE+G M A+P+ VS +AK+R
Sbjct: 162 SEADLLRTEEHGCMAGANPADVSEKAKER 190
>gi|257053819|ref|YP_003131652.1| hypothetical protein Huta_2758 [Halorhabdus utahensis DSM 12940]
gi|256692582|gb|ACV12919.1| protein of unknown function UPF0027 [Halorhabdus utahensis DSM
12940]
Length = 486
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 167/283 (59%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y + A G+ + Q+ V+IH GSRG GHQV TD L +E+A +
Sbjct: 205 SGNHFLEVQRVTDVYREDVAESFGLSE-DQIVVLIHCGSRGLGHQVCTDYLRDIEQAHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S+ +A+ N + L MH + FA F+ D+
Sbjct: 264 LLEQLPDKELAAAPAGSHLAEAYYGAMNAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H ++G+ + L VHRKG+TRAFP HP IP Y+ GQPV+I G
Sbjct: 324 EMELLYDVAHNIAKKETHTIEGQDRELFVHRKGATRAFPAGHPEIPAAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ-GISIRVA 368
+MG SYVL G E M ETFGST HGAGR +SR +++ ++V + L Q I ++
Sbjct: 384 SMGAGSYVLRGGEHSMAETFGSTAHGAGRLMSRTEAKNTYWGEDVQDDLRDQEQIYVKAE 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI + + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRISDELGIGDRVARTFPVCNIKG 486
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
L+ +++ + E+L ++F+ IP G+G G++ + LEE L G++W+L EGY
Sbjct: 108 LKTNLTYSDIQGREEQLVDALFEAIPSGLGGGGVVQTDVDTLEEVLTRGVEWALDEGYAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP VS +AK RG Q+
Sbjct: 168 EDDLAHCEDEGVRPGADPDAVSKKAKDRGRQQL 200
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E+L ++F+ IP G+G G++ + LEE L G++W+L EGY +D H E
Sbjct: 122 EQLVDALFEAIPSGLGGGGVVQTDVDTLEEVLTRGVEWALDEGYAVEDDLAHCE 175
>gi|345878896|ref|ZP_08830588.1| protein RtcB [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224103|gb|EGV50514.1| protein RtcB [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 491
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 166/278 (59%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q+V ++YD A+ + + G++ + IH GSRG GHQ+ T+ L M K
Sbjct: 215 SGNHYLEVQLVAQVYDAETAAAFDLRE-GEIVISIHCGSRGLGHQIGTEFLKFMATKAKD 273
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
I DR+LACA I S +++ A + + ++ + + + +
Sbjct: 274 HGIWLPDRELACAPIESKLGQSYLGAMRAGINCALANRQILTHLTREVCDDVLPGTQLTL 333
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E H +DGK+K L VHRKG+T A P HP +P + GQPV+IGG+MGT
Sbjct: 334 LYDVSHNTCKRETHRIDGKEKQLFVHRKGATLALGPGHPDLPDGLREVGQPVIIGGSMGT 393
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L G ++ + F S CHGAGRA+SR ++ + + ++ +LE++GI IR S + V
Sbjct: 394 ESYILAGVKESEKLAFSSACHGAGRAMSRHQATKRWHGRNLIKELETRGILIRSPSLRGV 453
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V+ VVD H G+S+K +L P+ +KG
Sbjct: 454 AEEAPGAYKDVSRVVDVAHQAGLSRKVARLEPLICVKG 491
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L G + + H + LA + IP G+GS G I + R++++ L G W++ +GY
Sbjct: 117 TLHTGLTLDQLRPHKKALADLLAVAIPAGLGSTGTIKLTHREMDQMLIGGAAWAVEQGYG 176
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
D EE+G M A+P+ VS +AK+R
Sbjct: 177 SEADLLRTEEHGCMAGANPADVSEKAKER 205
>gi|14325584|dbj|BAB60487.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 469
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 238/475 (50%), Gaps = 91/475 (19%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G+ + D L +N+ G + Q+ NVA LPGIV S +PD+H
Sbjct: 22 MIVHGIVYSTDKL-------FKNTVEDG-------SLNQVVNVAKLPGIVEASYAMPDIH 67
Query: 61 --------SVPSTQWLSDNTMRSSNIWKR---SPLTLGAGNHYAEIQ-----IVDEIYD- 103
V + + + + + L G +YA+I+ I D I+
Sbjct: 68 LGYGFPIGGVAAFDY-DEGIISPGGVGYDINCGVALLRTGMNYAQIKPRIKDITDYIFQE 126
Query: 104 --------------------------KWAASK--------MGIEDVGQV-----CVMIHS 124
KWA S+ + ED G + V +
Sbjct: 127 VPSGLTSRKGFPVNQNDLQEILTSGLKWAVSRGLATELDMINTEDNGSIESHGTHVSKQA 186
Query: 125 GSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG Q+ T AGNH+ EIQ V +I+D+ A K G+ +V VMIH+GSRG GHQVA
Sbjct: 187 MQRGLS-QIGTLGAGNHFLEIQRVSDIFDEDVARKFGLYK-DEVTVMIHTGSRGLGHQVA 244
Query: 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYD 236
TD L ++ ++ R++I+T+D +L + S + + A F + ++ +
Sbjct: 245 TDYLRELRES--RESIKTSDPELISIHVKSKIGENYLDAMKSAANFAFVNRQMAIYGVRK 302
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
F K F+ P+ ++Y ++HNIAK E+H+V+GK K+L+VHRKG+TRAF P P
Sbjct: 303 VFKKFFDVEPE-----LVYSLAHNIAKVEDHIVEGKTKSLIVHRKGATRAFGPGKSSPP- 356
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
++ TG PVLI G+MGT SYVL G ++ + ++FG+ CHG+GR LSR ++ + V
Sbjct: 357 -FEDTGHPVLIPGSMGTASYVLVGVKENLIKSFGTACHGSGRVLSRNQAIKKFS-SIVDR 414
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+LE + + R A+ +++ EEAP SYKNV +VV +++ ++ P+AV+KG
Sbjct: 415 ELEEKDVYARPATKRVLYEEAPGSYKNVDEVVAAVEGAHLARSIVRMVPLAVVKG 469
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G +A+ K + + +F +P G+ S+ P+N DL+E L G+ W++ G
Sbjct: 103 LRTGMNYAQIKPRIKDITDYIFQEVPSGLTSRKGFPVNQNDLQEILTSGLKWAVSRGLAT 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D + E+ G + + + VS +A +RGL Q+
Sbjct: 163 ELDMINTEDNGS-IESHGTHVSKQAMQRGLSQI 194
>gi|410463461|ref|ZP_11316975.1| hypothetical protein B193_1487 [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983425|gb|EKO39800.1| hypothetical protein B193_1487 [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 474
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/441 (33%), Positives = 216/441 (48%), Gaps = 77/441 (17%)
Query: 39 QIANVAALPGIVGRSVGLPDVH------------------------------SVPSTQWL 68
Q+ANVA+LPG+VG V LPD H + L
Sbjct: 43 QLANVASLPGVVGPVVALPDAHPGFGFPIGCVAAFDPEAGGVVSAGGVGFDIACGVRTLL 102
Query: 69 SDNTMR---------SSNIWKRSPLTLGAGNHYAEIQIVDEIYDK-------WAASKMGI 112
+D ++ + ++ R P +G G +++ D+ D+ WA S+ G
Sbjct: 103 TDLSVEDVAPARDRIADALFSRVPCGVGQGG---ALRLSDKDMDRMLRHGAAWAVSQ-GY 158
Query: 113 EDVGQVCVMIHSGSRGF---GHQVATA-------------GNHYAEIQIVDEIYDKWAAS 156
+ + G+ GH ATA GNHY E+Q V++I + +A
Sbjct: 159 GEAADLTRCEEGGTMAGADPGHVSATARNRQRDELGSLGSGNHYLEVQWVEDILGRASAD 218
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
G+ GQV V IH GSRG GHQVATD + M +A I D LACA + S + +
Sbjct: 219 AYGLRP-GQVVVSIHCGSRGLGHQVATDHMAAMRRAAPGHGIALPDPDLACAPVASAEGQ 277
Query: 217 AFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
A+ + + H++ + F + F + +++DVSHN K E H
Sbjct: 278 AYLGAMRAAVNCALAGRQVITHLVREVFGELFPGC----RLPLLFDVSHNTCKAERHGAG 333
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
G+ +TL VHRKG+TRA+ P HP +P + GQPV+IGG+MGT SYVL G + +F
Sbjct: 334 GRARTLYVHRKGATRAYGPGHPDLPNFCRKVGQPVIIGGSMGTASYVLAGAAGAAELSFA 393
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
S CHGAGR + R ++ + +EVL +L+ G+++R S K V EEAP +YK++
Sbjct: 394 SACHGAGRTMGRKQAAKRFPSREVLAELDRAGVALRAKSLKGVGEEAPGAYKDIDAAAAA 453
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
A+G++ KT +LRP+A IKG
Sbjct: 454 AQALGLAVKTARLRPLACIKG 474
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+R+A ++F +P GVG G + ++ +D++ L G W++ +GY A D CEE G M
Sbjct: 115 DRIADALFSRVPCGVGQGGALRLSDKDMDRMLRHGAAWAVSQGYGEAADLTRCEEGGTMA 174
Query: 529 NADPSKVSMRAKKR 542
ADP VS A+ R
Sbjct: 175 GADPGHVSATARNR 188
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+R+A ++F +P GVG G + ++ +D++ L G W++ +GY A D E
Sbjct: 114 RDRIADALFSRVPCGVGQGGALRLSDKDMDRMLRHGAAWAVSQGYGEAADLTRCE 168
>gi|260893599|ref|YP_003239696.1| hypothetical protein Adeg_1757 [Ammonifex degensii KC4]
gi|260865740|gb|ACX52846.1| protein of unknown function UPF0027 [Ammonifex degensii KC4]
Length = 473
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 242/463 (52%), Gaps = 62/463 (13%)
Query: 1 MNVEGVFFVNDHLEKLM-----LEELRNS-CRPGMV-----------GGFLP--GVKQIA 41
M V+ V +VND+L + + LE+L N+ C PG+V G LP GV +A
Sbjct: 19 MRVDAVIYVNDYLRRFLGEDKALEQLMNAACLPGVVEPVIGMPDIHEGFGLPIGGVMAVA 78
Query: 42 NVAAL-PGIVGRSV--GLPDVHSVPSTQWLSDNTMRS--SNIWKRSPLTLGAGNHYAEI- 95
+ G VG + G+ + + + + + +R I P +G + I
Sbjct: 79 PDGVISAGAVGMDINCGVRLIRTDLEARHFNKSLLRRLIERIEHYVPTGVGKKGKHQGIT 138
Query: 96 -QIVDEIYDKWAASKMG-----------IEDVGQVCVM---IHSGSRGFGH----QVAT- 135
+I +E+ + + + IE++G C+ I + SR Q+ T
Sbjct: 139 RRIFEEVVHRGVTAVIEAGFGQPGDEEYIEEMG--CLPGADISACSRRACERGEVQLGTL 196
Query: 136 -AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
GNH+ EIQ V +++D+ A G+ + GQ+ +MIH+GSRGFGHQ+ TD ++ A K
Sbjct: 197 GGGNHFIEIQRVTDVFDEELARCFGLFE-GQLTIMIHTGSRGFGHQICTDYTNRLAAAAK 255
Query: 195 RDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
R IE DR LACA INS + +A+ A F + + M I AFA +P++
Sbjct: 256 RYGIELPDRGLACAPINSPEGRAYYQAMACAVNFAFSNRQIIMADIARAFADVLGQSPEE 315
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+ ++YDV+HNIAK EEH + LLVHRKG+TRA HP P Y+ TG P LI
Sbjct: 316 MGFRLVYDVAHNIAKWEEH----GGRRLLVHRKGATRALCAGHPANPPVYRRTGHPALIP 371
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SYVL GTEK ETF S HGAGR LSR + + + +E + ++R
Sbjct: 372 GSMGTASYVLVGTEKA-AETFFSVNHGAGRLLSRTAAEKKITKEEFERAMGDVVYNVR-- 428
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S K +++E+P +YK++ V+ T GI++K ++ P+AV+KG
Sbjct: 429 SYKDLLDESPTAYKDIEQVIQTLVDRGITRKVARMCPLAVVKG 471
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 464 DKEHFERLAQSMFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
+K RL + + ++P GVG KG + R EE + G+ + G+ D+E+ E
Sbjct: 109 NKSLLRRLIERIEHYVPTGVGKKGKHQGITRRIFEEVVHRGVTAVIEAGFGQPGDEEYIE 168
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G + AD S S RA +RG Q+
Sbjct: 169 EMGCLPGADISACSRRACERGEVQL 193
>gi|374849362|dbj|BAL52380.1| hypothetical conserved protein, partial [uncultured planctomycete]
Length = 444
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 151/240 (62%), Gaps = 7/240 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD ++D+ AA MG+ GQVCVMIHSGSRG G+QV DAL + A ++
Sbjct: 206 SGNHFLEVQVVDAVFDQEAAEVMGLFP-GQVCVMIHSGSRGLGYQVCDDALHALRNAPEK 264
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQL CA ++S + + + A F L + F F+ DL
Sbjct: 265 YGIKLPDRQLLCAPVHSPEGQHYIGAMRAAANFAWCNRQLLTWQAREVFESVFDKPWQDL 324
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M V+YDV HNIAK EEH ++GK+K + VHRKG+TRAFPP HP IP Y+ GQPVLI G
Sbjct: 325 QMQVVYDVCHNIAKFEEHEIEGKKKWVWVHRKGATRAFPPGHPEIPEKYRRIGQPVLIPG 384
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG S+VL G + M ++FG+TCHGAGRA+SR + ++ + + +L+ +GI R S
Sbjct: 385 DMGRASWVLVGQQDSMAKSFGTTCHGAGRAMSRTAAVQDARGRSIERELQERGIVARARS 444
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L +F IP GVG G + ++L + G + ++ G ED EH E
Sbjct: 119 RPRLKELVNELFQQIPTGVGRTGKYHFDRKELRHLMAEGPRYLIQRGLCTEEDIEHTEAE 178
Query: 525 GRMLNADPSKVSMRAKKRGLPQ 546
GR+ A P VS RA RG Q
Sbjct: 179 GRLEGAKPENVSDRALDRGAEQ 200
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+G+ F +D L +E++R+ P +Q+ANVA LPGI S+ +PD+H
Sbjct: 27 MRVDGIIFADDGL----IEQIRHDQAP----------EQVANVAFLPGIQVASLAMPDIH 72
>gi|15605635|ref|NP_213010.1| hypothetical protein aq_032 [Aquifex aeolicus VF5]
gi|2982790|gb|AAC06415.1| hypothetical protein aq_032 [Aquifex aeolicus VF5]
Length = 480
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/286 (40%), Positives = 173/286 (60%), Gaps = 17/286 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++IY+ A K+GI + GQV VM+HSGSRGFGHQV TD L K +
Sbjct: 202 SGNHFVEVQAVEQIYEPEIAEKLGIWE-GQVMVMVHSGSRGFGHQVCTDYLRVALKVRDK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFA------KQFNTTPDDL 249
I+ D QLAC NS + +A+ K N + + F K + ++
Sbjct: 261 YKIKLPDPQLACMPFNSPEGQAYFKAMNAAANYAFANRQILGFKAANTVRKTLGISWEEF 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+IYD +HNI K E+H VDGK+ ++VHRKG+TRAFPP++P +P Y+ GQPV+I G
Sbjct: 321 GYRLIYDHAHNIGKVEKHEVDGKKVEVIVHRKGATRAFPPYNPEVPPAYREVGQPVIIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSR---RNLDYQEVLNKLESQGISIR 366
MG S++L G M+ +FG+ CHGAGR +SR +++ + + ++V+ L +
Sbjct: 381 DMGRASFLLVGQTNSMKMSFGTACHGAGRVMSRRQAKKYVKEVGLEKVIGNL------VV 434
Query: 367 VASPK-LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VA K +MEE P++YK+VT+VV +GI+K +L+P+ +KG
Sbjct: 435 VARGKGTIMEEIPQAYKDVTEVVRVIDELGIAKAVARLKPLGTLKG 480
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ + +M ++P GVGS I ++ ++E L G W++ G+ + ED +H E +G +
Sbjct: 118 IKEIMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEHGFGFPEDLQHIEGFGAL 177
Query: 528 LNADPSKVSMRAKKRGLPQVSDRRGTGSS 556
NADP K S A +RG SD GT S
Sbjct: 178 PNADPEKASHEAYERG----SDELGTVGS 202
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ + +M ++P GVGS I ++ ++E L G W++ G+ + ED +H E
Sbjct: 119 KEIMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEHGFGFPEDLQHIE 172
>gi|323137021|ref|ZP_08072101.1| protein of unknown function UPF0027 [Methylocystis sp. ATCC 49242]
gi|322397782|gb|EFY00304.1| protein of unknown function UPF0027 [Methylocystis sp. ATCC 49242]
Length = 476
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 170/289 (58%), Gaps = 13/289 (4%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
H++ T +GNHY E+Q +D+I+D A+ G+ G+ V IH GSRG GHQ+ T+ L +
Sbjct: 193 HEMGTLGSGNHYLEVQEIDQIFDPEIAAGYGLVK-GECVVTIHCGSRGLGHQIGTEFLRE 251
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQF 242
M A + I DR+LACA I S + + + + ++ H+ + FA+ F
Sbjct: 252 MALAAESHGIVLPDRELACAPIKSELGQRYLGAMRSAINCALANREIIGHLARETFARFF 311
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
+ ++ +++DVSHN K E H VDG+ + L VHRKG+TRAF P H +P + G
Sbjct: 312 PHS----ELPLMFDVSHNTCKIENHNVDGETRKLFVHRKGATRAFGPGHASLPEALKRFG 367
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
QPVLIGG+MG SYVL G ++ F S CHGAGR +SR + R ++V++ L S G
Sbjct: 368 QPVLIGGSMGAGSYVLAGVATSEEQAFSSACHGAGRRMSRHAATRAWGGRKVVDDLRSLG 427
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I ++ S + V EEAP +YK+V VVD+ G++KK L+P+ +KG
Sbjct: 428 IIVKSPSLRGVAEEAPGAYKDVRAVVDSAEVAGLAKKVAFLKPLICVKG 476
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F+H+P GVGS+G I ++ ++ L G W++ G A+D + EE GR A
Sbjct: 119 LADALFEHVPAGVGSEGEIGLDVAEMNAMLLGGAQWAVARGLGRADDLDRIEESGRSAGA 178
Query: 531 DPSKVSMRAKKR 542
P VS A+KR
Sbjct: 179 APDAVSEHARKR 190
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 412 IYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERL 471
I + + LA ++F+H+P GVGS+G I ++ ++ L G W++ G A+D + E
Sbjct: 113 IAVQQDLADALFEHVPAGVGSEGEIGLDVAEMNAMLLGGAQWAVARGLGRADDLDRIEES 172
Query: 472 AQS 474
+S
Sbjct: 173 GRS 175
>gi|268326033|emb|CBH39621.1| conserved hypothetical protein, UPF0027 family [uncultured
archaeon]
Length = 502
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 169/308 (54%), Gaps = 38/308 (12%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDEI+DK A+ GI++VGQV V+IH+G RGF H V T L + E+ M +
Sbjct: 201 SGNHFLEVQVVDEIFDKQLANAYGIDEVGQVTVLIHTGGRGFSHGVCTYYLRKFEREMNK 260
Query: 196 D----NIETNDRQLACARINSNK------------NKAFAKQFNTTPDDLDMHVIYDAFA 239
D I +R+LACA +NS+ N AFA + L H F
Sbjct: 261 DATLSKILGLERELACAYLNSDTGMDYFVSMCACANYAFANR------QLATHWTRKVFE 314
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+D+++ ++YD++HNIAK EEH+VDGK+K L VHRKG+TRAFP +P Y+
Sbjct: 315 DVLRRKAEDMEIKLVYDIAHNIAKEEEHVVDGKRKKLCVHRKGATRAFPAGDERLPPIYR 374
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI G+MGT S++ GT+ ETFGS HG+GR +SR + R EV +L
Sbjct: 375 NVGQPVLIPGSMGTRSFLAVGTDVARDETFGSCAHGSGREMSRTAAMRQYRGSEVKAELA 434
Query: 360 SQGISIRVASPKL----------------VMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ I ++ + EE +YK+ VV +C GI+KK
Sbjct: 435 KRNIIVKTRERTKRDVRKKRGIQFDKYGELAEEVSAAYKDPEVVVRSCEVSGIAKKVAAF 494
Query: 404 RPVAVIKG 411
R + VIKG
Sbjct: 495 RGIGVIKG 502
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L+EG + + H L S+FD+IP G+G G + ++ L+E L G +W + GY
Sbjct: 107 NLKEGDV----RPHLSELLDSLFDYIPAGLGLSGKVKLSYSQLDEVLLGGSNWCIENGYG 162
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
W ED EH EE GR+ A K+ ++KKRG PQ+
Sbjct: 163 WEEDIEHTEEGGRLKAASIDKIDEKSKKRGSPQL 196
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---RLAQS 474
L S+FD+IP G+G G + ++ L+E L G +W + GY W ED EH E RL +
Sbjct: 120 LLDSLFDYIPAGLGLSGKVKLSYSQLDEVLLGGSNWCIENGYGWEEDIEHTEEGGRLKAA 179
Query: 475 MFDHI 479
D I
Sbjct: 180 SIDKI 184
>gi|239907182|ref|YP_002953923.1| hypothetical protein DMR_25460 [Desulfovibrio magneticus RS-1]
gi|239797048|dbj|BAH76037.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 474
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 217/443 (48%), Gaps = 77/443 (17%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH------------------------------SVPSTQ 66
++Q+ANVA+LPG+VG V LPD H +
Sbjct: 41 LRQLANVASLPGVVGPVVALPDAHPGFGFPIGCVAAFDPEAGGVISAGGVGFDIACGVRT 100
Query: 67 WLSDNTMR---------SSNIWKRSPLTLGAGNHYAEIQIVDEIYDK-------WAASK- 109
L+D ++ + ++ R P +G G +++ D+ D+ WA +
Sbjct: 101 LLTDLSVEDIAPARDRIADALFARVPCGVGQGG---ALRLSDKDMDRMLRHGAAWAVGQG 157
Query: 110 ---------------MGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWA 154
M D GQV R + + GNHY E+Q V++I D+ +
Sbjct: 158 YGEAADLAHCEEGGTMAGADPGQVSATAKERQRDELGSLGS-GNHYLEVQWVEDILDRAS 216
Query: 155 ASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNK 214
A G+ GQV V IH GSRG GHQVATD + M +A +I D LACA + S +
Sbjct: 217 ADAYGLRP-GQVVVSIHCGSRGLGHQVATDHMAAMRRAAPGHDIVLPDPDLACAPVASAE 275
Query: 215 NKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
+A+ + + H++ + FA F + +++DVSHN K E H
Sbjct: 276 GQAYLGAMRAAVNCALAGRQVITHLVREVFAGLFPGC----RLPLLFDVSHNTCKAERHG 331
Query: 269 VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQET 328
G+ +TL VHRKG+TRA+ HP +P + GQPV+IGG+MGT SYVL G + +
Sbjct: 332 AGGRPRTLYVHRKGATRAYGTGHPDLPDFCRDVGQPVIIGGSMGTASYVLAGGTEAAALS 391
Query: 329 FGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVV 388
F S CHGAGRA+ R ++ ++ +EVL +L+ G+++R S + V EEAP +YK++
Sbjct: 392 FASACHGAGRAMGRKQAAKSFPSREVLAELDHIGVALRAKSLRGVGEEAPGAYKDIDSAA 451
Query: 389 DTCHAVGISKKTFKLRPVAVIKG 411
A+G++ T +LRP+A IKG
Sbjct: 452 AAAQALGLAVITARLRPLACIKG 474
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+R+A ++F +P GVG G + ++ +D++ L G W++ +GY A D HCEE G M
Sbjct: 115 DRIADALFARVPCGVGQGGALRLSDKDMDRMLRHGAAWAVGQGYGEAADLAHCEEGGTMA 174
Query: 529 NADPSKVSMRAKKR 542
ADP +VS AK+R
Sbjct: 175 GADPGQVSATAKER 188
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 415 NERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+R+A ++F +P GVG G + ++ +D++ L G W++ +GY A D H E
Sbjct: 114 RDRIADALFARVPCGVGQGGALRLSDKDMDRMLRHGAAWAVGQGYGEAADLAHCE 168
>gi|13542153|ref|NP_111841.1| hypothetical protein TVN1322 [Thermoplasma volcanium GSS1]
Length = 466
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 238/475 (50%), Gaps = 91/475 (19%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G+ + D L +N+ G + Q+ NVA LPGIV S +PD+H
Sbjct: 19 MIVHGIVYSTDKL-------FKNTVEDG-------SLNQVVNVAKLPGIVEASYAMPDIH 64
Query: 61 --------SVPSTQWLSDNTMRSSNIWKR---SPLTLGAGNHYAEIQ-----IVDEIYD- 103
V + + + + + L G +YA+I+ I D I+
Sbjct: 65 LGYGFPIGGVAAFDY-DEGIISPGGVGYDINCGVALLRTGMNYAQIKPRIKDITDYIFQE 123
Query: 104 --------------------------KWAASK--------MGIEDVGQV-----CVMIHS 124
KWA S+ + ED G + V +
Sbjct: 124 VPSGLTSRKGFPVNQNDLQEILTSGLKWAVSRGLATELDMINTEDNGSIESHGTHVSKQA 183
Query: 125 GSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG Q+ T AGNH+ EIQ V +I+D+ A K G+ +V VMIH+GSRG GHQVA
Sbjct: 184 MQRGLS-QIGTLGAGNHFLEIQRVSDIFDEDVARKFGLYK-DEVTVMIHTGSRGLGHQVA 241
Query: 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYD 236
TD L ++ ++ R++I+T+D +L + S + + A F + ++ +
Sbjct: 242 TDYLRELRES--RESIKTSDPELISIHVKSKIGENYLDAMKSAANFAFVNRQMAIYGVRK 299
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
F K F+ P+ ++Y ++HNIAK E+H+V+GK K+L+VHRKG+TRAF P P
Sbjct: 300 VFKKFFDVEPE-----LVYSLAHNIAKVEDHIVEGKTKSLIVHRKGATRAFGPGKSSPP- 353
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
++ TG PVLI G+MGT SYVL G ++ + ++FG+ CHG+GR LSR ++ + V
Sbjct: 354 -FEDTGHPVLIPGSMGTASYVLVGVKENLIKSFGTACHGSGRVLSRNQAIKKFS-SIVDR 411
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+LE + + R A+ +++ EEAP SYKNV +VV +++ ++ P+AV+KG
Sbjct: 412 ELEEKDVYARPATKRVLYEEAPGSYKNVDEVVAAVEGAHLARSIVRMVPLAVVKG 466
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G +A+ K + + +F +P G+ S+ P+N DL+E L G+ W++ G
Sbjct: 100 LRTGMNYAQIKPRIKDITDYIFQEVPSGLTSRKGFPVNQNDLQEILTSGLKWAVSRGLAT 159
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D + E+ G + + + VS +A +RGL Q+
Sbjct: 160 ELDMINTEDNGS-IESHGTHVSKQAMQRGLSQI 191
>gi|114320881|ref|YP_742564.1| hypothetical protein Mlg_1728 [Alkalilimnicola ehrlichii MLHE-1]
gi|114227275|gb|ABI57074.1| protein of unknown function UPF0027 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 475
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 165/278 (59%), Gaps = 4/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V+ +YD A+ +G+ + G V V IH GSRG GHQ+ T+ L M A
Sbjct: 200 SGNHYLEVQAVETLYDPDTAAVLGLAE-GDVVVTIHCGSRGLGHQIGTEFLRDMLPAAAE 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
I DR+LACA I+S + + + + L I FA++ F D + +
Sbjct: 259 AGIHLPDRELACAPIHSPIGERYLGAMRSAINCALANRQILGEFAREVFARFFPDHPLDL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K E H VDG+ + L VHRKG+TRAF P H +P + GQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKVETHTVDGRPRRLFVHRKGATRAFGPAHADLPEALRGVGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
S++L GT G + F S CHGAGRA+SR + + ++V+++L +GI IR S + V
Sbjct: 379 GSHILVGTGAG-DKAFSSACHGAGRAMSRRAALKRWRGRQVVDELAERGILIRSPSMRGV 437
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V VV G++++ LRP+ +KG
Sbjct: 438 AEEAPGAYKDVDQVVIAAERAGLARRVAHLRPLICVKG 475
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L G E + ERLA ++ IP GVGS I + R+++ L G W++ +G+
Sbjct: 102 TLLTGLTVPEVRRVQERLADALMSSIPAGVGSHSGITLQGREMDAMLRGGAAWAVEKGWG 161
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKR 542
AED EE GRM ADP VS RAKKR
Sbjct: 162 GAEDLARIEERGRMEGADPDCVSERAKKR 190
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ ERLA ++ IP GVGS I + R+++ L G W++ +G+ AED E
Sbjct: 115 VQERLADALMSSIPAGVGSHSGITLQGREMDAMLRGGAAWAVEKGWGGAEDLARIE 170
>gi|335438447|ref|ZP_08561191.1| hypothetical protein HLRTI_14918 [Halorhabdus tiamatea SARL4B]
gi|334892068|gb|EGM30312.1| hypothetical protein HLRTI_14918 [Halorhabdus tiamatea SARL4B]
Length = 486
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 168/283 (59%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y + A + G+E+ Q+ V+IH GSRG GHQV TD L ++EK +
Sbjct: 205 SGNHFLEVQRVTDVYREDVAERFGLEE-DQIVVLIHCGSRGLGHQVCTDYLREIEKTHEG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S+ + + N + L MH + FA F+ D+
Sbjct: 264 LLEQLPDKELAAAPAGSHLAEEYYAAMNAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H + + + L VHRKG+TRAFP HP +P Y+ GQP++I G
Sbjct: 324 EMELLYDVAHNIAKKETHTIGDEDRELFVHRKGATRAFPAGHPEVPAAYRDVGQPIIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G E + ETFGST HGAGR +SR +++ ++V + L E+Q I ++
Sbjct: 384 SMGAGSYVLRGGENSLAETFGSTAHGAGRLMSRTEAKNTYWGEDVQDDLRETQEIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK++ +VV +GI + + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDIDEVVRISDELGIGDRVARTFPVCNIKG 486
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ L ++F+ IP G+G G++ + L E LE G++W+L EGY +D HCE+ G
Sbjct: 122 QELVDALFEAIPSGLGGGGVVQTDVDTLAEILERGVEWALEEGYAVEDDLTHCEDEGVRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD VS +AK RG Q+
Sbjct: 182 GADADAVSKKAKDRGRQQL 200
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F+ IP G+G G++ + L E LE G++W+L EGY +D H E
Sbjct: 122 QELVDALFEAIPSGLGGGGVVQTDVDTLAEILERGVEWALEEGYAVEDDLTHCE 175
>gi|268323093|emb|CBH36681.1| conserved hypothetical protein, UPF0027 family [uncultured
archaeon]
Length = 502
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 169/308 (54%), Gaps = 38/308 (12%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDEI+DK A+ GI++VGQV ++IH+G RGF H V T L + E+ M +
Sbjct: 201 SGNHFLEVQVVDEIFDKQLANAYGIDEVGQVTILIHTGGRGFSHGVCTYYLRKFEREMNK 260
Query: 196 D----NIETNDRQLACARINSNK------------NKAFAKQFNTTPDDLDMHVIYDAFA 239
D I +R+LACA +NS+ N AFA + L H F
Sbjct: 261 DATLSKILGLERELACAYLNSDTGMDYFVSMCACANYAFANR------QLATHWTRKVFE 314
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+D+++ ++YD++HNIAK EEH+VDGK+K L VHRKG+TRAFP +P Y+
Sbjct: 315 DVLRRKAEDMEIKLVYDIAHNIAKEEEHVVDGKRKKLCVHRKGATRAFPAGDERLPPIYR 374
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI G+MGT S++ GT+ ETFGS HG+GR +SR + R EV +L
Sbjct: 375 NVGQPVLIPGSMGTRSFLAVGTDVARDETFGSCAHGSGREMSRTAAMRQYRGSEVKAELA 434
Query: 360 SQGISIRVASPKL----------------VMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ I ++ + EE +YK+ VV +C GI+KK
Sbjct: 435 KRNIIVKTRERTKRDVRKKRGIQFDKYGELAEEVSAAYKDPEVVVRSCEVSGIAKKVAAF 494
Query: 404 RPVAVIKG 411
R + VIKG
Sbjct: 495 RGIGVIKG 502
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
+L+EG + + H L S+FD+IP G+G G + ++ L+E L G +W + GY
Sbjct: 107 NLKEGDV----RPHLSELLDSLFDYIPAGLGLSGKVKLSYSQLDEVLLGGSNWCIENGYG 162
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
W ED E EE GR+ A K+ ++KKRG PQ+
Sbjct: 163 WEEDIERTEEGGRLKAASIEKIDEKSKKRGSPQL 196
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L S+FD+IP G+G G + ++ L+E L G +W + GY W ED E E
Sbjct: 120 LLDSLFDYIPAGLGLSGKVKLSYSQLDEVLLGGSNWCIENGYGWEEDIERTE 171
>gi|163782479|ref|ZP_02177476.1| hypothetical protein HG1285_16385 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882052|gb|EDP75559.1| hypothetical protein HG1285_16385 [Hydrogenivirga sp. 128-5-R1-1]
Length = 942
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 115/282 (40%), Positives = 174/282 (61%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V+EIYD+ A K+G+ + GQV +M+HSGSRGFGHQV TD L + +
Sbjct: 664 SGNHFVEVQFVEEIYDEDVAQKIGLNE-GQVTIMVHSGSRGFGHQVCTDYLKVAVNTLPK 722
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
IE D QLAC S + +A+ K + + + + K + +DL
Sbjct: 723 YGIELPDPQLACMPFLSKEGQAYFKAMCASANYAFANRQILGFKTANTVRKFLGLSWEDL 782
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+IYD +HNIAK E H V K K ++VHRKG+TRAFPP +P +P Y+ GQPV+I G
Sbjct: 783 GYRLIYDHAHNIAKVEGHRVGNKVKKVVVHRKGATRAFPPFNPEVPPAYRDVGQPVIIPG 842
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SY+L G + M+++FG+ CHGAGR +SR K+++ + Q L K+ + G+++
Sbjct: 843 DMGRASYLLVGQPEAMEKSFGTACHGAGRVMSRRKAKKFVKEQG-LEKVIA-GLTVVARG 900
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+MEE P++YK+V++VV + +GI+K +L+P+ +KG
Sbjct: 901 KGTIMEEIPQAYKDVSEVVRVINDLGIAKVVARLKPMGTLKG 942
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 466 EHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYG 525
+ + L Q + ++P GVGS G I ++ +EE L G W++ GY + ED EH E +G
Sbjct: 578 DRIKELMQEILKNVPAGVGSTGDIKLSHSKMEEVLVKGARWAVEHGYGFEEDLEHIESFG 637
Query: 526 RMLNADPSKVSMRAKKRGLPQVSDRRGTGSS 556
+ ADP K S A +RG SD GT S
Sbjct: 638 ALPEADPDKASQEAYERG----SDELGTVGS 664
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLA 472
L Q + ++P GVGS G I ++ +EE L G W++ GY + ED EH E
Sbjct: 583 LMQEILKNVPAGVGSTGDIKLSHSKMEEVLVKGARWAVEHGYGFEEDLEHIESFG 637
>gi|296268820|ref|YP_003651452.1| hypothetical protein Tbis_0835 [Thermobispora bispora DSM 43833]
gi|296091607|gb|ADG87559.1| protein of unknown function UPF0027 [Thermobispora bispora DSM
43833]
Length = 465
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 184/290 (63%), Gaps = 15/290 (5%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G QV + +GNH+ E+Q V+++YD+ A+ G+ +GQVCVMIH GSRG GHQ+ TD
Sbjct: 186 RGLG-QVGSLGSGNHFLEVQAVEQVYDEKVAAAFGLR-LGQVCVMIHCGSRGLGHQICTD 243
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ M+KAM+R I DRQLACA + S + +A+ + + ++ +A + F
Sbjct: 244 HVRVMDKAMRRYGISVPDRQLACAPVESPEGRAYLGAMAAAANYSRANRQLLAEATRRAF 303
Query: 243 N-TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
T LD+ +YDVSHN+AK E H DG + L VHRKG+TRA PPHHP +P D
Sbjct: 304 QKVTGARLDL--VYDVSHNLAKLERH--DG--RLLCVHRKGATRALPPHHPDLPPDLAPF 357
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G G + F STCHGAGR SR ++ R + +E+ ++LE+Q
Sbjct: 358 GQPVLIPGTMGTASYVLAGVPDG--KAFHSTCHGAGRTQSRHQAARMVSGRELRDRLEAQ 415
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI++R +S + + EEAP +YK++ V+ G+ + +L P+ V+KG
Sbjct: 416 GIAVRGSSLRGLSEEAPTAYKDIDAVIAASTGAGLCRAVARLVPLGVVKG 465
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHC 521
E RL + IP G G G+ ++ R L+E L G +++ +G+ A D E C
Sbjct: 106 ELAPRLTRLMDILDATIPRGAGPGGVWKLSGRAQLDELLRKGARYAVEQGHGVARDLERC 165
Query: 522 EEYGRMLNADPSKVSMRAKKRGLPQV 547
E+ G + +ADP +V RA KRGL QV
Sbjct: 166 EDQGAVADADPDQVGDRAIKRGLGQV 191
>gi|89902611|ref|YP_525082.1| hypothetical protein Rfer_3852 [Rhodoferax ferrireducens T118]
gi|89347348|gb|ABD71551.1| protein of unknown function UPF0027 [Rhodoferax ferrireducens T118]
Length = 476
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 169/282 (59%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V ++D AS G+ G + +MIH GSRG GHQ+ T+ L +M +A
Sbjct: 200 SGNHYLEVQEVTAVFDAAIASAYGLHQ-GDIVLMIHCGSRGLGHQIGTEFLRKMVEAAPG 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S+ + + + + ++ D FAK +
Sbjct: 259 YGIILPDRELACAPIRSDLGQEYLGAMRAAINCALANRQILTQLVRDVFAKLLPSA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ V+YDVSHN K E H VDG+ + L VHRKG+TRA+ P HP +P + +GQPVLIGG
Sbjct: 315 QLPVLYDVSHNTCKLETHKVDGQPRELYVHRKGATRAWGPGHPELPQALRASGQPVLIGG 374
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GT+ F S CHGAGRA+SR ++ + + + V+++L +GI IR S
Sbjct: 375 SMGTGSYVLAGTKASESLAFSSACHGAGRAMSRHQALKTWNGRTVVDELAQRGILIRSPS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V EEAP++YK+V VVD A G+++K +L P+ IKG
Sbjct: 435 MRGVAEEAPDAYKDVNAVVDAADAAGLARKVARLEPLVCIKG 476
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR +I A +E LA+++F+ IP GVGS G I +N+ ++ L G W++ G+
Sbjct: 107 LRREHIMAVQRE----LAEALFERIPAGVGSTGAIRLNSAQMDAMLSGGAKWAVERGWGS 162
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKR 542
D E EE+G+ML+A P VS +AKKR
Sbjct: 163 NADLERVEEHGQMLHAKPKFVSEQAKKR 190
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ LA+++F+ IP GVGS G I +N+ ++ L G W++ G+ D E E Q
Sbjct: 115 VQRELAEALFERIPAGVGSTGAIRLNSAQMDAMLSGGAKWAVERGWGSNADLERVEEHGQ 174
Query: 474 SM 475
+
Sbjct: 175 ML 176
>gi|289758762|ref|ZP_06518140.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714326|gb|EFD78338.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length = 431
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 18/293 (6%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPES---YKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R ++ +P YK+V +V++ H +++K +L P+ +KG
Sbjct: 383 GIIVR----GRIVGVSPRKAGVYKDVDEVIEASHQSVLARKVARLVPLGCVKG 431
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|448579498|ref|ZP_21644623.1| rtcB-like protein [Haloferax larsenii JCM 13917]
gi|445723204|gb|ELZ74849.1| rtcB-like protein [Haloferax larsenii JCM 13917]
Length = 474
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 161/278 (57%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E+YD AA+ GI D+ ++ VMIH+GSRG GHQ + + + E+A
Sbjct: 198 SGNHFLEVQRVSEVYDSAAAAAFGI-DLDEIVVMIHAGSRGLGHQTCSHYIDEFERAYPD 256
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQFNTTPDDLDMHV 253
+ QL A ++ + N + + + A + F+ +D D+ +
Sbjct: 257 LAESLPNEQLVYAPVSDRLAGEYRSAMNAAANFAWGNRQAMTQAVREVFSDLFEDADVQL 316
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YD+ HNIA E H V ++TLLVHRKG++RAFP HP +P Y GQPV + G MG+
Sbjct: 317 VYDLGHNIATEEHHAVGDDEQTLLVHRKGASRAFPAGHPDVPDAYADVGQPVFVPGDMGS 376
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL G + ++ +FGS HGAGRA SR K+ R E+ L ++GI +R S + +
Sbjct: 377 RSYVLAGGSRSLERSFGSAPHGAGRAKSRTKASREYAAGELQQALRARGIFVRAQSGETL 436
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EE+P +YKNV +VV CH +G+ K + P+A IKG
Sbjct: 437 TEESPGAYKNVDEVVHVCHELGLGTKVAQTTPLANIKG 474
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G + E LA +F IP G G+ + + D+ LE G++W L EG+
Sbjct: 102 LRTGLSFHEVAGRESMLADRLFQTIPTGFGAGSYLDTDIADVRGILETGVEWLLNEGHAR 161
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D EHCEE GR DP+ V A KRG+ QV
Sbjct: 162 KADLEHCEENGRH-PGDPNAVPTEALKRGVDQV 193
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA +F IP G G+ + + D+ LE G++W L EG+ D EH E
Sbjct: 118 LADRLFQTIPTGFGAGSYLDTDIADVRGILETGVEWLLNEGHARKADLEHCE 169
>gi|16081421|ref|NP_393759.1| hypothetical protein Ta0279 [Thermoplasma acidophilum DSM 1728]
gi|10639422|emb|CAC11424.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 466
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 177/289 (61%), Gaps = 21/289 (7%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T AGNH+ E+Q V +I+D A K GI+ + +V VM+H+GSRG GHQVATD + +
Sbjct: 190 QIGTLGAGNHFLEVQKVSQIFDYDLAGKFGIK-MNEVTVMVHTGSRGLGHQVATDYIRML 248
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFN 243
+A +++T+D +L A + S + + A F + ++ I F K F
Sbjct: 249 REA--DYSVKTSDPELISAPVRSPIGEKYIDAMRSAANFAFVNRQIAIYRIRSVFEKHFG 306
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP +IY ++HNIAK E H+VDG+ ++VHRKG+TRAFP P ++ TG
Sbjct: 307 VTP-----RLIYSLAHNIAKEENHVVDGESMKVIVHRKGATRAFPAGKASSP--FEDTGH 359
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK-LESQG 362
PVLI G+MGT SYVL G + ++FG+TCHG+GR LSR ++ + Y ++ K L+ +
Sbjct: 360 PVLIPGSMGTASYVLVGLRDNLDKSFGTTCHGSGRVLSRNQAVKK--YAGLVEKELQEKN 417
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ R A+ +++ EEAPESYKNV +VVD + ++K K+ PV+V+KG
Sbjct: 418 VYARPATKQVLYEEAPESYKNVDEVVDAVYGASLAKPVVKMIPVSVVKG 466
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 458 GYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAED 517
G + E + + +F IP G+ S+ + +++ DL E L G+ W+ +D
Sbjct: 103 GISFDEFMPKIKEVTDDLFIEIPSGLTSRKGLKVSSSDLNEILRSGLKWAYEHDLATRDD 162
Query: 518 KEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+H E++G + N+ VS A++RG+ Q+
Sbjct: 163 MDHTEDHGSIENSG-ENVSKAAQQRGMSQI 191
>gi|374340269|ref|YP_005097005.1| hypothetical protein Marpi_1304 [Marinitoga piezophila KA3]
gi|372101803|gb|AEX85707.1| hypothetical protein Marpi_1304 [Marinitoga piezophila KA3]
Length = 459
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 170/282 (60%), Gaps = 25/282 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQIV+++++K A + G+ + GQ+ MIHSGSRG GHQVATD + +K
Sbjct: 197 SGNHFIEIQIVEKVFEKENAERYGLFE-GQIVYMIHSGSRGLGHQVATDYIKIFRDNLKD 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDM------HVIYDAFAKQFNTTPDDL 249
N + D+QL A S + + N + + H I + F F D+
Sbjct: 256 WNKKIPDKQLINAPFKSKYGQEYFSAMNAAANFAFVNRQIMGHKIRNIFKDLF-----DV 310
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YD++HNIAK E+H VDG++K L+VHRKG+TRAFP Q VLI G
Sbjct: 311 ESKLLYDITHNIAKLEKHNVDGEEKDLIVHRKGATRAFPD-------------QIVLIPG 357
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG+ SY+L GTEK M FGS+ HGAGR L R +++R L+Y+ VLN ++ + I I S
Sbjct: 358 SMGSSSYILLGTEKSMSIAFGSSAHGAGRVLGRRQAKRRLNYKNVLNSMKEKKIKIISKS 417
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++EEAPE YK+V VVD +GIS+K KL PV V+KG
Sbjct: 418 KNTIVEEAPEVYKDVDSVVDIIEKIGISRKIAKLTPVGVVKG 459
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLG+GNH+ EIQIV+++++K A + G+ + GQ+ MIHSGSRG GHQVAT
Sbjct: 194 TLGSGNHFIEIQIVEKVFEKENAERYGLFE-GQIVYMIHSGSRGLGHQVAT 243
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
++E K++ + + +++ IPVGVGS+ ++ +++++ L G+ W++ Y AED +
Sbjct: 106 FSEIKDYIDEILTRVYNEIPVGVGSRTNFKLSVKEMKKILNNGVYWAINNNYGLAEDLYN 165
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
E+ G++ AD VS A KRG +D GT
Sbjct: 166 IEDSGKIKYADADFVSDEAIKRG----ADELGT 194
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 413 YLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
Y++E L + +++ IPVGVGS+ ++ +++++ L G+ W++ Y AED + E
Sbjct: 112 YIDEILTR-VYNEIPVGVGSRTNFKLSVKEMKKILNNGVYWAINNNYGLAEDLYNIE 167
>gi|108758274|ref|YP_633573.1| hypothetical protein MXAN_5426 [Myxococcus xanthus DK 1622]
gi|108462154|gb|ABF87339.1| conserved hypothetical protein, UPF0027 family [Myxococcus xanthus
DK 1622]
Length = 497
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 169/281 (60%), Gaps = 12/281 (4%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q V+ + D AA +G+ + GQ+ V+IH+GSRG GHQV TDA+ M++A+ R+
Sbjct: 223 GNHFLEVQRVERVLDSEAAPALGLFE-GQLTVLIHTGSRGLGHQVCTDAVRTMDRALARE 281
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLD 250
I+ DRQLACA ++S + + + + + + + + F + F
Sbjct: 282 GIQLVDRQLACAPLSSAEGQDYFAAMCAAANFAWANRQVLTYRVREVFRRWFGDRSAAWP 341
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK E H G Q+ L VHRKG+TRAF P HP +P Y GQPV I G+
Sbjct: 342 -RIVYDVAHNIAKLEPH---GGQR-LCVHRKGATRAFGPGHPELPAAYHQVGQPVFIPGS 396
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT S+VL G E + S CHGAGR LSRA S+R + E+ L QGI++ S
Sbjct: 397 MGTASFVLVGKEAAEAISLSSACHGAGRRLSRAASKRQVVGSELRAALNRQGIAVECPSN 456
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP +YK+V VVD A GI++K +L P+AV+KG
Sbjct: 457 AELAEEAPLAYKDVDRVVDVVEAAGIARKVARLVPLAVLKG 497
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLRE-GYIWAEDKEHCEE 523
KE ++A + IP G G G + + ++ L G+ + + G ED ++ E
Sbjct: 134 KEVLPKVAHDLARSIPTGFGRHGRLSLAPEQMDRVLTEGVPYLVDVLGLGTPEDVDYLEA 193
Query: 524 YGRMLNADPSKVSMRAKKRGLPQV 547
G + AD +KVS+RA++RG Q+
Sbjct: 194 RGCLDGADTAKVSVRAQERGHDQL 217
>gi|223937547|ref|ZP_03629450.1| protein of unknown function UPF0027 [bacterium Ellin514]
gi|223893710|gb|EEF60168.1| protein of unknown function UPF0027 [bacterium Ellin514]
Length = 483
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 171/292 (58%), Gaps = 12/292 (4%)
Query: 131 HQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
+Q+ T +GNHY E+Q+ + ++D+ A GI QV VM H GSRGFGHQVATD L
Sbjct: 193 NQIGTLGSGNHYLEVQVARKENVFDQELAHAFGITAPDQVVVMFHCGSRGFGHQVATDYL 252
Query: 187 VQMEKAMK-RDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFA 239
+ M+ + I+ DR+LACA NS + + + + + +H I F+
Sbjct: 253 QIFLRVMENKYRIKILDRELACAPFNSPEGQNYFAAMKCGINMSFANRQVILHHIRKVFS 312
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
F + +DL + ++YDV+HN AK E H V +++ LLVHRKG+TRAF P +P Y+
Sbjct: 313 TIFQRSAEDLGLRMVYDVAHNTAKLERHRVGNQERMLLVHRKGATRAFAPGMAGVPEQYK 372
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPV+IGG+M T SY+L G G Q +F ST HG+GR +SR K+R+ Q++ + LE
Sbjct: 373 QLGQPVIIGGSMETGSYLLVGVPSGAQ-SFFSTAHGSGRTMSRTKARKLWRGQKLQHDLE 431
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+GI +R S + EEA +YK++ +V+ G+ K+ + P+ IKG
Sbjct: 432 QRGIYVRSTSWAGLAEEAGSAYKDIDEVIHAAETAGLCKRVARFSPIGNIKG 483
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E K + L S+F +P GVGS GI+ + + +E G W + GY ED E
Sbjct: 111 EVKPRIKELTNSLFKEVPAGVGSAGILKLTREEFRRVIEEGARWCVANGYGCEEDLALTE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E G + AD KVS RA RGL Q+
Sbjct: 171 EQGCIDGADALKVSERAIDRGLNQI 195
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAED 464
L S+F +P GVGS GI+ + + +E G W + GY ED
Sbjct: 119 LTNSLFKEVPAGVGSAGILKLTREEFRRVIEEGARWCVANGYGCEED 165
>gi|86157373|ref|YP_464158.1| hypothetical protein Adeh_0946 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773884|gb|ABC80721.1| protein of unknown function UPF0027 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 487
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 210/444 (47%), Gaps = 71/444 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDV-----------------HSVPS--------------- 64
++Q+ANVA LPGI+ S+ +PD+ H S
Sbjct: 46 LQQVANVAHLPGILRWSLAMPDIHWGYGFPIGGVAAVDAEHGAVSPGGVGYDINCGVRVV 105
Query: 65 TQWLSDNTMR------SSNIWKRSPLTLGAGNHYAEIQI--VDEIYD---KWAASKMGIE 113
T L +R ++ I++ P +GA + +DE+ +WA ++ G
Sbjct: 106 TTGLDAEDVRPRLHALAARIYRDVPTGVGASAAIPRLTARELDEVLAEGARWAVAR-GFR 164
Query: 114 DVGQVCVMIHSGSRGFGHQVAT-----------------AGNHYAEIQIVDEIYDKWAAS 156
G R G A +GNH+ E+ V I+D AA
Sbjct: 165 AAADDADRCEEGGRLAGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDAVAAE 224
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR---DNIETNDRQLACARINSN 213
G+ GQ+ V IHSGSRG G+QV +AL ++ + D DRQLACA + S
Sbjct: 225 AFGLFP-GQLVVQIHSGSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSP 283
Query: 214 KNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 267
+ + + + + + A + +L ++YDV HN+AK E+H
Sbjct: 284 EGRRYLAAMQAAANFAWANRQVMTGLAVRALLDTLGVSDRELGARLLYDVCHNVAKLEDH 343
Query: 268 MVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQE 327
VDG + +LVHRKG+TRAF P P +P Y+ GQPVLI G MG SYVL GT+K M++
Sbjct: 344 QVDGGVRRVLVHRKGATRAFGPGDPRVPAPYRAVGQPVLIPGDMGRYSYVLAGTDKAMRD 403
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDV 387
TFGS+CHGAGR LSR ++ R + + +L +GI + K + EE E+YK+V V
Sbjct: 404 TFGSSCHGAGRLLSRGEALRRARGRSIARELADRGIEVIARGRKTLGEEMSEAYKDVAQV 463
Query: 388 VDTCHAVGISKKTFKLRPVAVIKG 411
V GIS+ +L P+AV+KG
Sbjct: 464 VAVMDGAGISRLVARLDPLAVVKG 487
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 462 AED-KEHFERLAQSMFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGY-IWAEDK 518
AED + LA ++ +P GVG+ IP + AR+L+E L G W++ G+ A+D
Sbjct: 111 AEDVRPRLHALAARIYRDVPTGVGASAAIPRLTARELDEVLAEGARWAVARGFRAAADDA 170
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553
+ CEE GR+ ADP+ VS RA++RG SD+ GT
Sbjct: 171 DRCEEGGRLAGADPAAVSARARERG----SDQLGT 201
>gi|448361745|ref|ZP_21550358.1| hypothetical protein C481_06816 [Natrialba asiatica DSM 12278]
gi|445649425|gb|ELZ02362.1| hypothetical protein C481_06816 [Natrialba asiatica DSM 12278]
Length = 488
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 163/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +I+D G+E Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDIFDDEVGEAYGLE-ADQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 266 LLNQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRRVFERVFDRSWEAM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DMH++YDV+HNIAK E H V G ++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 DMHLLYDVAHNIAKKETHTVAGDERDLYVHRKGATRAFPAGHPEVPAAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G E M TFGST HGAGR +SR +++ +V ++L E Q I ++
Sbjct: 386 SMGAGSYVLRGGEHSMDLTFGSTAHGAGRLMSRTRAKNEFWGGDVQDELEEQQQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 488
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F +IP G+G G++ ++E L G+DW+L G+
Sbjct: 110 MRTNLTYDELQGREEELVDSLFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G A+P KVS +AK RG Q+
Sbjct: 170 EDDLLHCEDEGMREGANPEKVSQKAKDRGKNQI 202
>gi|167042979|gb|ABZ07692.1| putative uncharacterized protein family UPF0027 [uncultured marine
microorganism HF4000_ANIW137P11]
Length = 547
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 165/290 (56%), Gaps = 17/290 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD + D+ AA+ G+ + GQV MIH+GSRG GHQV ++ + +E R
Sbjct: 261 SGNHFLELQVVDRVVDEVAAAAFGLRE-GQVTAMIHTGSRGLGHQVCSEHVAAIESKYTR 319
Query: 196 DNIE---------TNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT- 245
E DRQLA A I S + A+ + + A ++ T
Sbjct: 320 IGDEWVADEWDYRLRDRQLAAAPIFSREGSAYLDAMRAAGNYAFAN--RSALTQRLRTVL 377
Query: 246 ----PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
D + ++YDV HNIAK E+H V GK VHRKG+TRA H + +
Sbjct: 378 RGHLGSDGGLELVYDVCHNIAKVEDHNVHGKSCKCCVHRKGATRALGGDHSELAARFSAV 437
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVL+ G MGT S+VL G ++G + F S+CHGAGR LSR +R+ +D E+ +LE+
Sbjct: 438 GQPVLVPGDMGTASWVLAGPKEGSNDAFSSSCHGAGRRLSRTAARKLIDSDELRARLEAS 497
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R +P ++ EEAP++YK+V +V+ + +++ +LRP AVIKG
Sbjct: 498 GIHVRAKTPNVLAEEAPDAYKDVDEVIRLSASANLARPVARLRPFAVIKG 547
>gi|448368966|ref|ZP_21555733.1| hypothetical protein C480_12921 [Natrialba aegyptia DSM 13077]
gi|445651509|gb|ELZ04417.1| hypothetical protein C480_12921 [Natrialba aegyptia DSM 13077]
Length = 488
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 163/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDVFDDEVGEAYGLE-TDQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 266 LLNQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRRVFERVFDRSWEAM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DMH++YDV+HNIAK E H V G ++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 DMHLLYDVAHNIAKKETHTVGGDERELYVHRKGATRAFPAGHPEVPAAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE-SQGISIRVA 368
+MG SYVL G E M TFGST HGAGR +SR +++ +V ++LE Q I ++
Sbjct: 386 SMGAGSYVLRGGEHSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDVQDELEDQQQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 488
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F +IP G+G G++ +EE LE G+DW+L G+
Sbjct: 110 MRTNLTYDELQGREEELVDSLFANIPSGLGGGGVVEAGVDTVEEILERGVDWALENGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 170 EDDLLHCEDEGMREGADPGKVSQKAKDRGKNQI 202
>gi|284165831|ref|YP_003404110.1| hypothetical protein Htur_2560 [Haloterrigena turkmenica DSM 5511]
gi|284015486|gb|ADB61437.1| protein of unknown function UPF0027 [Haloterrigena turkmenica DSM
5511]
Length = 488
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 165/285 (57%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++EK +
Sbjct: 205 SGNHFLEVQRVTDVFDGDVGEAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEKQHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + +++
Sbjct: 264 LLNQLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
DMH++YDV+HNIAK E H V DG+Q+ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 DMHLLYDVAHNIAKKETHTVNDDGEQRELYVHRKGATRAFPAGHPEVPKAYRDVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V +LE Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEYWGGDVQQELEEQDQIYVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 AQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F ++P G+G GI+ +EE LE G+DW+L G+
Sbjct: 108 MRTNLTYDELQGREEELVDSLFTNVPSGLGGGGIVEAGVDTVEEILERGVDWALEHGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED HCE+ G AD KVS +AK RG Q+
Sbjct: 168 EEDLLHCEDEGMREGADADKVSQKAKDRGKNQI 200
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L S+F ++P G+G GI+ +EE LE G+DW+L G+ ED H E
Sbjct: 122 EELVDSLFTNVPSGLGGGGIVEAGVDTVEEILERGVDWALEHGHAVEEDLLHCE 175
>gi|78357132|ref|YP_388581.1| hypothetical protein [Desulfovibrio alaskensis G20]
gi|78219537|gb|ABB38886.1| protein of unknown function UPF0027 [Desulfovibrio alaskensis G20]
Length = 478
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 167/282 (59%), Gaps = 13/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY EIQIVD I+D AA+ G+ + Q+ + IHSGSRG GHQ+ATD + M+ A+
Sbjct: 204 SGNHYLEIQIVDSIHDTAAAAHFGLAE-NQIAISIHSGSRGTGHQIATDYIKAMQNALP- 261
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
D D LA A + S+ + + + H++ F + F +
Sbjct: 262 DGHPAPDPSLAYAPLTSDLGRRYLAAMKAGRNCALANRQTIAHMVRKTFLRLFPSC---- 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDVSHN E H+++G+ + L VHRKG+TRA P H + + TGQPVL+GG
Sbjct: 318 RITQLYDVSHNTCNEEHHVIEGQSRRLFVHRKGATRALPSGHAALGPLFDATGQPVLVGG 377
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT S++L +G + + S HGAGR LSRA++R+ + +++ L+ GIS+R S
Sbjct: 378 SMGTASWILCAA-RGAEASMYSANHGAGRLLSRAQARKRQQPRSLMDALKHAGISVRTHS 436
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P+L+ EEAP +YK+V V DT A GI++K +LRP+ IKG
Sbjct: 437 PQLLAEEAPLAYKDVDHVTDTACATGIARKVARLRPLICIKG 478
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
+A ++F IP G+ + +NA ++++ L G W++R G ED H EE G + A
Sbjct: 123 IADALFRAIPAGLKGSSHLSLNAEEIKQILHEGAAWAVRNGMGEKEDLWHTEENGCVAGA 182
Query: 531 DPSKVSMRAKKR 542
D ++VS A++R
Sbjct: 183 DAAQVSTEARQR 194
>gi|52550444|gb|AAU84293.1| conserved hypothetical protein [uncultured archaeon GZfos9D1]
Length = 506
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 170/308 (55%), Gaps = 38/308 (12%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ +VDEI+D+ A GIE GQV V+IH+G RGF H V + L E+ M +
Sbjct: 205 SGNHFLELGVVDEIFDERLAKAYGIEKQGQVTVLIHTGGRGFSHGVCSYYLRSFEREMSK 264
Query: 196 D----NIETNDRQLACARINSNK------------NKAFAKQFNTTPDDLDMHVIYDAFA 239
D I + +R+LACA ++S+ N AFA + + MH + F
Sbjct: 265 DATLSKILSLERELACAYLSSDTGMDYFEAMCACANYAFANR------QIAMHWVRKVFE 318
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
++ +D+++ ++YD++HNIAK EEH+V+GK+K L VHRKG+TRAFP +P Y+
Sbjct: 319 DVLRSSAEDMEIKLVYDIAHNIAKEEEHVVEGKRKKLCVHRKGATRAFPAGDARLPAVYR 378
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI G+MGT S++ GTE ETFGS HG+GR +SR + R EV +L
Sbjct: 379 NIGQPVLIPGSMGTRSFLAVGTETAKLETFGSCAHGSGREMSRTAAMRKYRGSEVREELA 438
Query: 360 SQGISIRVASPKL----------------VMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ I ++ + + EE +YK+ VV +C GI+K+
Sbjct: 439 KRNIIVKTRERRKRDVRRKRGIPFDKYGELAEEVAAAYKDPEVVVRSCEVSGIAKRVAAF 498
Query: 404 RPVAVIKG 411
R + VIKG
Sbjct: 499 RGIGVIKG 506
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + + +F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE
Sbjct: 118 RPYLPEILDVLFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEG 177
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G++ A+P K+ ++KKRG PQ+
Sbjct: 178 GKLEAANPEKIDEKSKKRGAPQL 200
>gi|317153510|ref|YP_004121558.1| hypothetical protein Daes_1800 [Desulfovibrio aespoeensis Aspo-2]
gi|316943761|gb|ADU62812.1| protein of unknown function UPF0027 [Desulfovibrio aespoeensis
Aspo-2]
Length = 486
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 164/291 (56%), Gaps = 21/291 (7%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---EKAM 193
GNHY E+Q ++ I D + G+ + G + IH GSRG GHQ+ D + ++ KA
Sbjct: 201 GNHYLEVQWIERILDADKGAAFGLRE-GDAVISIHCGSRGLGHQIGQDFIDELAPGSKAR 259
Query: 194 KRDN-------IETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAK 240
++ + DR+L CA I+S + + + + H++ FA
Sbjct: 260 RKGKAAAPNPYLPVPDRELVCAPIDSEPGRRYLGAMRAGINCALANRQVITHLVRGVFAD 319
Query: 241 QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
F DL +YDVSHN + E H+ +GK++TL VHRKG+TRA P HP +P +
Sbjct: 320 LFPAARLDL----LYDVSHNTCRAERHLAEGKEQTLFVHRKGATRALGPGHPELPDTLRA 375
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
TGQPVL+GG+MGT SY+L GT +G +F S CHGAGR+LSR ++RR ++V++ L+
Sbjct: 376 TGQPVLVGGSMGTASYILAGTAEGEARSFASACHGAGRSLSRTEARRRFKGRDVVDTLQH 435
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI IR S + + EEAP +YK++ +V+ + G++ + P+ +KG
Sbjct: 436 HGIFIRTFSDRGIAEEAPGAYKDIDEVIASAAGAGLAVPVARTHPLICVKG 486
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA ++F +P GVG G I + ++ + LE G W++ GY D E++GRM
Sbjct: 117 EALADALFHAVPSGVGQGGRIILKGDEMAQMLEGGAAWAVGRGYGLPADLARIEDHGRMP 176
Query: 529 NADPSKVSMRAKKR 542
A P VS RA++R
Sbjct: 177 GAMPGHVSPRARER 190
>gi|338730199|ref|YP_004659591.1| hypothetical protein Theth_0400 [Thermotoga thermarum DSM 5069]
gi|335364550|gb|AEH50495.1| protein of unknown function UPF0027 [Thermotoga thermarum DSM 5069]
Length = 465
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 174/289 (60%), Gaps = 10/289 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RGF +++T AGNH+ EIQ V+EIYD+ A + G+ QV +H GSRGFGHQ+ATD
Sbjct: 183 RGF-DELSTLGAGNHFIEIQKVEEIYDENVAKEFGLFQ-NQVVFSVHCGSRGFGHQIATD 240
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQF 242
+ M + N D+QL A N + + N + + +I K
Sbjct: 241 YIQIMRDKLADHNKNLPDKQLINAPFNHPIGQKYFSAMNCAANYAFANRQMIGFMLTKAA 300
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
++ ++YDV+HNIAK E + +G++ L++HRKG+TRA P +P++ Y+ G
Sbjct: 301 RKVFPKAEVTLLYDVAHNIAKLEVY--NGRK--LIIHRKGATRALGPGNPILNEVYRAIG 356
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
QPVLI G+MG+ SYVL GT+K Q ++GST HGAGR L R + R++ Y++VL L +G
Sbjct: 357 QPVLIPGSMGSASYVLVGTKKAEQISYGSTAHGAGRVLGRRAALRSMSYKDVLQSLAEKG 416
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + K ++EEAPE+YK+V VV+ ++GISKK KL P+ V+KG
Sbjct: 417 IEVVSKEKKTLVEEAPETYKDVDRVVEIVDSIGISKKVAKLVPLGVVKG 465
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 55/94 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
++ + + K +L + +FD +PVGVG++G + ++ + L+E E+G W++ GY
Sbjct: 96 MKTNLTYEQVKPVLRKLLEEIFDSVPVGVGARGAVEIDKKTLKEICELGARWAVENGYGS 155
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVS 548
ED + E+ G + A+P VS +A +RG ++S
Sbjct: 156 KEDLQRIEDGGTVGPANPDDVSDKAYERGFDELS 189
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+L + +FD +PVGVG++G + ++ + L+E E+G W++ GY ED + E
Sbjct: 111 KLLEEIFDSVPVGVGARGAVEIDKKTLKEICELGARWAVENGYGSKEDLQRIE 163
>gi|389845988|ref|YP_006348227.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|448616397|ref|ZP_21665107.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|388243294|gb|AFK18240.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|445751052|gb|EMA02489.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
Length = 478
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/277 (40%), Positives = 159/277 (57%), Gaps = 3/277 (1%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q V ++YD A+ GI D V VMIH+GSRG GHQ + L E+ +
Sbjct: 203 GNHFLEVQRVTDVYDTETAAAFGI-DTDDVVVMIHTGSRGLGHQTYSHYLRAFERKYRSL 261
Query: 197 NIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVI 254
D++L A + + + A + + A K F+ D ++ ++
Sbjct: 262 AESLPDKKLVYAPLGDDLADEYWNAMNAAANFAWANRQALTQAVRKVFDDLFDTTEVELV 321
Query: 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
YDV HN+AK E H VDG+ KTLLVHRKG+TRAFP P IP Y+ GQPV I G+MG+
Sbjct: 322 YDVCHNMAKEERHTVDGETKTLLVHRKGATRAFPAGRPEIPEAYRSVGQPVFIPGSMGSH 381
Query: 315 SYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVM 374
SY+L G + + +FGST HGAGR LSRA++R E+ L ++GI +R S + +
Sbjct: 382 SYILVGGPQSLARSFGSTAHGAGRQLSRAEARTEYSAGELKKALRARGIFVRARSGRTLA 441
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK++ +VV A+GI + + P+A IKG
Sbjct: 442 EEAPGAYKDIDEVVRVSDALGIGTRVARTAPLANIKG 478
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G + + LA ++ IP G G + N D+ LE G++W L G+
Sbjct: 106 LRTGLTYKDIVSEQSILADRLYQTIPTGAAEGGSLDTNISDVRGILEGGLEWMLANGHAT 165
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D +HCEE G L +DP+ V A KRG+ QV
Sbjct: 166 KTDLDHCEENGH-LPSDPNAVPTEALKRGVNQV 197
>gi|448314293|ref|ZP_21503992.1| hypothetical protein C493_20219 [Natronolimnobius innermongolicus
JCM 12255]
gi|445595405|gb|ELY49514.1| hypothetical protein C493_20219 [Natronolimnobius innermongolicus
JCM 12255]
Length = 488
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDVFDDEVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + +D+
Sbjct: 266 LLNQLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEDM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H V+GK++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 EMELLYDVAHNIAKKETHTVEGKERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIRVA 368
+MG +YVL G E M TFGST HGAGR +SR +++ +V +LE Q I ++
Sbjct: 386 SMGAGNYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKDEYWGGDVQQELEEQDQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F ++P G+G GI+ ++E LE G+DW+L G+
Sbjct: 110 MRTNLTYDELQGREEELVDSLFANVPSGLGGGGIVESGVDTVDEILERGVDWALEHGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED HCE+ G AD K+S +AK RG Q+
Sbjct: 170 EEDLLHCEDEGMREGADADKISQKAKDRGKNQI 202
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L S+F ++P G+G GI+ ++E LE G+DW+L G+ ED H E
Sbjct: 124 EELVDSLFANVPSGLGGGGIVESGVDTVDEILERGVDWALEHGHAVEEDLLHCE 177
>gi|448303010|ref|ZP_21492960.1| hypothetical protein C495_01880 [Natronorubrum sulfidifaciens JCM
14089]
gi|445594017|gb|ELY48184.1| hypothetical protein C495_01880 [Natronorubrum sulfidifaciens JCM
14089]
Length = 488
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 166/283 (58%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ S G+E Q+ V+IH GSRG GHQ D L ++EK +
Sbjct: 207 SGNHFLEVQRVTDVFHDEVGSAYGLEK-DQIVVLIHCGSRGLGHQTCNDYLRKIEKQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
D++LA A S + + N + L MH + F + F+ + +D+
Sbjct: 266 LLNTLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTREVFERVFDQSWEDM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 EMDLLYDVAHNIAKKEVHDVDGEKRELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIRVA 368
+MGT SYVL G E M+ TFGST HGAGR +SR +++ +V ++LE Q I ++
Sbjct: 386 SMGTGSYVLRGGENSMELTFGSTAHGAGRLMSRTQAKSEYWGGDVQDELEEQDQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRISDELGIGDKVARTFPVCNIKG 488
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L S+F ++P G+G GI+ ++E L G+DW+L Y +D HCE+ G A
Sbjct: 126 LVDSLFANVPSGLGGGGIVESGVDTVDEILARGVDWALENSYAVEDDLRHCEDEGTREEA 185
Query: 531 DPSKVSMRAKKRGLPQV 547
DPSK+S +AK RG Q+
Sbjct: 186 DPSKISQKAKDRGKNQI 202
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L S+F ++P G+G GI+ ++E L G+DW+L Y +D H E
Sbjct: 126 LVDSLFANVPSGLGGGGIVESGVDTVDEILARGVDWALENSYAVEDDLRHCE 177
>gi|291279625|ref|YP_003496460.1| hypothetical protein DEFDS_1236 [Deferribacter desulfuricans SSM1]
gi|290754327|dbj|BAI80704.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 479
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 175/293 (59%), Gaps = 10/293 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG+ Q+ T +GNH+ E+ V+EI+ + A + G+ GQ+ ++IHSGSRG GHQ+ +D
Sbjct: 189 RGY-DQLGTLGSGNHFLELGYVEEIFLEDIAKEWGLFK-GQLTLLIHSGSRGLGHQICSD 246
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAF 238
L EKA+K+ I+ D+QLACA + S + + + A F + + +
Sbjct: 247 FLDVFEKALKKYQIDVPDKQLACAPVLSPEGQEYLAALSCAANFAWANRQILQSLAINTL 306
Query: 239 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
A +L+ ++YDV+HNI K E+ +DG++K L VHRKG+TR+ P L+P Y
Sbjct: 307 ADILKVKVKNLNPSLLYDVAHNIVKFEKFEIDGEEKLLAVHRKGATRSLPRGSELLPTHY 366
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL 358
+ TGQPV+I G MG SY+L G +K +F S CHGAGR LSR K+ + + + +L
Sbjct: 367 KNTGQPVIIPGDMGRYSYILVGGDKAPVRSFNSACHGAGRVLSRHKAIKMAQNRNIATEL 426
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +GI + K + EE P++YK+V+ VV+ + I+KK KL+P+ VIKG
Sbjct: 427 KQEGIIVISRGKKTLKEEMPDAYKDVSKVVEIVDYLDIAKKVAKLKPLCVIKG 479
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E K + +A+ ++++IP GVG G I + ++L+ L+ G W++ EGY D + E
Sbjct: 110 EIKTDLKDVAKHLYNNIPCGVGEGGNIKLKKKELKNVLKKGSYWAVEEGYGNENDLLNTE 169
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
G++ A+P VS +A +RG Q+
Sbjct: 170 SSGKLDEANPDIVSNKAYERGYDQL 194
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY 459
+A+ ++++IP GVG G I + ++L+ L+ G W++ EGY
Sbjct: 118 VAKHLYNNIPCGVGEGGNIKLKKKELKNVLKKGSYWAVEEGY 159
>gi|448352720|ref|ZP_21541501.1| hypothetical protein C483_01861 [Natrialba hulunbeirensis JCM
10989]
gi|445641999|gb|ELY95070.1| hypothetical protein C483_01861 [Natrialba hulunbeirensis JCM
10989]
Length = 488
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDVFDSEVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 266 LLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWESM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 EMELLYDVAHNIAKKETHEVDGEERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIRVA 368
+MG SYVL G E M TFGST HGAGR +SR +++ +V ++LE Q I ++
Sbjct: 386 SMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDVQDELEEQDQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E E L ++F +IP G+G G++ ++E L G+DW+L G+
Sbjct: 110 MRTNLTYDELTGQEEELVDALFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 170 EDDLLHCEDEGMRDGADPEKVSQKAKDRGKNQI 202
>gi|448606048|ref|ZP_21658627.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sulfurifontis ATCC BAA-897]
gi|445739465|gb|ELZ90972.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sulfurifontis ATCC BAA-897]
Length = 486
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +IY A G+E Q+ V+IH GSRG GHQ TD L ++EK K
Sbjct: 205 SGNHFLEVQRVTDIYRDDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHKD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 EMRLLYDVAHNIAKKEVHEVDGEERELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G ++ + TFGST HGAGR +SR K+++ + V ++L E + I ++
Sbjct: 384 SMGAGSYVLRGGDRSLDLTFGSTAHGAGRLMSRTKAKQEYWGETVRDELREQEKIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 486
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L ++F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G
Sbjct: 120 HEEELVDALFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGF 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+A P VS +AK RG Q+
Sbjct: 180 RDDARPEFVSQKAKDRGRNQI 200
>gi|448348744|ref|ZP_21537592.1| hypothetical protein C484_04270 [Natrialba taiwanensis DSM 12281]
gi|445642405|gb|ELY95473.1| hypothetical protein C484_04270 [Natrialba taiwanensis DSM 12281]
Length = 488
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 163/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDVFDDEVGEAYGLE-ADQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 266 LLNQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRRVFERVFDRSWEAM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DMH++YDV+HNIAK E H V G ++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 DMHLLYDVAHNIAKKETHTVAGDERELYVHRKGATRAFPAGHPEVPAAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE-SQGISIRVA 368
+MG SYVL G + M TFGST HGAGR +SR +++ +V ++LE Q I ++
Sbjct: 386 SMGAGSYVLRGGKHSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDVQDELEDQQQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 488
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F +IP G+G G++ ++E L G+DW+L G+
Sbjct: 110 MRTNLTYDELQGREEELVDSLFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 170 EDDLLHCEDEGMREGADPEKVSQKAKDRGKNQI 202
>gi|448592546|ref|ZP_21651653.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
gi|445731551|gb|ELZ83135.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
Length = 486
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 161/283 (56%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG GHQ TD L ++EK
Sbjct: 205 SGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHAD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
E D++LA A S + + A F L MH + FA F+ ++
Sbjct: 264 LLDELPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWREM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM ++YDV+HNIAK E H VDG ++ L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 DMRLLYDVAHNIAKKEVHTVDGDERELYVHRKGATRAFPAGRPELPPAYAEVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G + + TFGST HGAGR +SR K+++ + V +L E Q I ++
Sbjct: 384 SMGAGSYVLRGGDSSLDLTFGSTAHGAGRLMSRTKAKQEYWGETVQEELREQQKIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVVRTFPVCNIKG 486
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++FD IP G+G G++ +A +++ L GM+W++ GY +D HCE+ G +A
Sbjct: 124 LVEALFDAIPSGLGGGGVVTGDAETIDDILARGMEWAVDAGYATEDDLAHCEDEGFRDDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +AK RG Q+
Sbjct: 184 RPEFVSQKAKDRGRNQI 200
>gi|52549275|gb|AAU83124.1| conserved hypothetical protein [uncultured archaeon GZfos26F9]
Length = 506
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 170/308 (55%), Gaps = 38/308 (12%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ +VDEI+D+ A + GIE+ GQV V+IH+G RGF H V + L E+ M +
Sbjct: 205 SGNHFLELGVVDEIFDERLAKEYGIEEKGQVTVLIHTGGRGFSHGVCSYYLRSFEREMSK 264
Query: 196 DN----IETNDRQLACARINSN------------KNKAFAKQFNTTPDDLDMHVIYDAFA 239
D I + +R+LACA ++S+ N AFA + + MH + F
Sbjct: 265 DTTLSKILSLERELACAYLSSDMGMDYFEAMCACANYAFANR------QIAMHWVRKVFE 318
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+D+++ ++YD++HNIAK EEH+V+GK+K L VHRKG+TRAFP +P Y+
Sbjct: 319 DVLRRKAEDMEIRLVYDIAHNIAKEEEHVVEGKRKKLCVHRKGATRAFPAGDARLPAVYR 378
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI G+MGT S++ GTE ETFGS HG+GR +SR + R EV +L
Sbjct: 379 NIGQPVLIPGSMGTRSFLAVGTETAKLETFGSCAHGSGREMSRTAAMRKYRGIEVREELA 438
Query: 360 SQGISIRVASPKL----------------VMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ I ++ + + EE +YK+ VV +C GI+K+
Sbjct: 439 KRNIIVKTRERRKRDVRRKRGIPFDKYGELAEEVSAAYKDPEVVVRSCEVSGIAKRVAAF 498
Query: 404 RPVAVIKG 411
R + VIKG
Sbjct: 499 RGIGVIKG 506
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
+ ++F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE G++ A
Sbjct: 124 ILDTLFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEGGKLKAA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
+P K+ ++KKRG PQ+
Sbjct: 184 NPEKIDEKSKKRGAPQL 200
>gi|297618298|ref|YP_003703457.1| hypothetical protein Slip_2150 [Syntrophothermus lipocalidus DSM
12680]
gi|297146135|gb|ADI02892.1| protein of unknown function UPF0027 [Syntrophothermus lipocalidus
DSM 12680]
Length = 473
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 170/287 (59%), Gaps = 26/287 (9%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q VD+++D A + G+ + GQ+ VMIH+GSRGFGHQ+ TD A R
Sbjct: 199 GNHFIELQRVDKVFDPEVAERFGLFE-GQLTVMIHTGSRGFGHQICTDYSKGHIPAAPRY 257
Query: 197 NIETNDRQLACARINSNK------------NKAFAKQFNTTPDDLDMHVIYDAFAKQFNT 244
IE + LACA I+S + N AFA + T D I AF +
Sbjct: 258 GIELPSKGLACAPIDSAEGRSYYAAMACAVNYAFANRQIITAD------IRQAFVQVLGL 311
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
+D+ + V+YDV+HNIAK EEH + LLVHRKG+TRA PP HP P Y+ TG P
Sbjct: 312 RLEDIGLQVVYDVAHNIAKWEEH----GGRRLLVHRKGATRALPPGHPANPPVYRGTGHP 367
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
L+ G+MGT SYVL GT+ E+F S HGAGR LSR+ + R++ +E + I
Sbjct: 368 ALVPGSMGTASYVLVGTDLA-AESFFSVNHGAGRTLSRSAAERSITKEEFEASMGE--IL 424
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + V++EAP++YK++ +VVDT +G+++K ++ P+AVIKG
Sbjct: 425 YNTRNFRDVVDEAPQAYKDIEEVVDTLVEIGLTRKIARMMPMAVIKG 471
>gi|448546204|ref|ZP_21626456.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-646]
gi|448548203|ref|ZP_21627547.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-645]
gi|448557390|ref|ZP_21632663.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-644]
gi|445703047|gb|ELZ54983.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-646]
gi|445714285|gb|ELZ66049.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-644]
gi|445714905|gb|ELZ66663.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-645]
Length = 486
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG GHQ TD L ++EK K
Sbjct: 205 SGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHKD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 EMRLLYDVAHNIAKKEVHEVDGEERELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G ++ + TFGST HGAGR +SR K+++ + V ++L E + I ++
Sbjct: 384 SMGAGSYVLRGGDRSLDLTFGSTAHGAGRLMSRTKAKQEYWGETVQDELREQEKIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 486
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K H E L ++F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+
Sbjct: 118 KGHEEELVDALFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATEDDLAHCEDE 177
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G +A P VS +AK RG Q+
Sbjct: 178 GFRDDARPEFVSQKAKDRGRNQI 200
>gi|448330845|ref|ZP_21520121.1| hypothetical protein C489_16894 [Natrinema versiforme JCM 10478]
gi|445610681|gb|ELY64450.1| hypothetical protein C489_16894 [Natrinema versiforme JCM 10478]
Length = 488
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 162/285 (56%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ K
Sbjct: 205 SGNHFLEVQRVTDVFDSGVGEAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHKG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 264 LLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWESM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
DMH++YDV+HNIAK E H V DG ++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 DMHLLYDVAHNIAKKETHTVNADGDERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE-SQGISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V LE Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEYWGGDVQQDLEDQQAIYVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 AQSGATIAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F +IP G+G GI+ ++E L G+DW+L G+
Sbjct: 108 MRTNLTYDELQGREEELVDSLFANIPSGLGGGGIVEPGIDAVDEILARGVDWALENGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED HCE+ G A P KVS +AK RG Q+
Sbjct: 168 EEDLLHCEDEGMREGAAPEKVSQKAKDRGKNQI 200
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L S+F +IP G+G GI+ ++E L G+DW+L G+ ED H E
Sbjct: 122 EELVDSLFANIPSGLGGGGIVEPGIDAVDEILARGVDWALENGHAVEEDLLHCE 175
>gi|448391680|ref|ZP_21566775.1| hypothetical protein C477_11182 [Haloterrigena salina JCM 13891]
gi|445665092|gb|ELZ17770.1| hypothetical protein C477_11182 [Haloterrigena salina JCM 13891]
Length = 488
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 165/285 (57%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D + G+E+ Q+ V+IH GSRG GHQ D L ++EK +
Sbjct: 205 SGNHFLEVQRVTDVFDGDVGAAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEKQHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 264 LLNQLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWESM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
DMH++YDV+HNIAK E H+V DG ++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 DMHLLYDVAHNIAKKETHVVNDDGDERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V +LE Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKSEYWGGDVQQELEEQDQIYVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 AQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F +IP G+G G++ +EE LE G+DW+L G+
Sbjct: 108 MRTNLTYDELQGREEELVDSLFANIPSGLGGGGVVEAGVDTVEEILERGVDWALEHGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED HCE+ G AD KVS +AK RG Q+
Sbjct: 168 EEDLLHCEDEGMREGADADKVSQKAKDRGKNQI 200
>gi|448317565|ref|ZP_21507115.1| hypothetical protein C492_13975 [Natronococcus jeotgali DSM 18795]
gi|445602956|gb|ELY56926.1| hypothetical protein C492_13975 [Natronococcus jeotgali DSM 18795]
Length = 486
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 162/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ K
Sbjct: 205 SGNHFLEVQRVTDVFDDEVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHKG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
D++LA A S + + N + L MH F + F+ + + +
Sbjct: 264 LLDRLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEAM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG ++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 324 EMDLLYDVAHNIAKKETHTVDGTERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE-SQGISIRVA 368
+MG SYVL G E M+ TFGST HGAGR +SR +++ +V +LE Q I ++
Sbjct: 384 SMGAGSYVLRGGENSMERTFGSTAHGAGRLMSRTQAKNEYWGGDVKQELEDQQQIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI + + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDRVARTFPVCNIKG 486
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L S+F ++P G+G GI+ ++E L G+DW+L G+ +D HCE+ G
Sbjct: 122 EELVDSLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALEHGHAVEDDLLHCEDEGTRE 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS +AK RG Q+
Sbjct: 182 GADPSKVSQKAKDRGKNQI 200
>gi|52548849|gb|AAU82698.1| conserved hypothetical protein [uncultured archaeon GZfos19A5]
Length = 506
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 168/308 (54%), Gaps = 38/308 (12%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ +VDEI+D+ A GIE GQV V+IH+G RGF H V + L E+ M +
Sbjct: 205 SGNHFLELGVVDEIFDERLAKAYGIEKQGQVTVLIHTGGRGFSHGVCSYYLRSFEREMSK 264
Query: 196 D----NIETNDRQLACARINSN------------KNKAFAKQFNTTPDDLDMHVIYDAFA 239
D I + +R+LACA ++S+ N AFA + + MH + F
Sbjct: 265 DATLSKILSLERELACAYLSSDMGMDYFEAMCACANYAFANR------QIAMHWVRKVFE 318
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+D+++ ++YD++HNIAK EEH+V+GK+K L VHRKG+TRAFP +P Y+
Sbjct: 319 DVLRRKAEDMEIRLVYDIAHNIAKEEEHVVEGKRKKLCVHRKGATRAFPAGDERLPAVYR 378
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI G+MGT S++ GTE ETFGS HG+GR +SR + R EV +L
Sbjct: 379 NIGQPVLIPGSMGTRSFLAVGTETAKLETFGSCAHGSGREMSRTAAMRKYRGIEVREELA 438
Query: 360 SQGISIRVASPKL----------------VMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ I ++ + + EE +YK+ VV +C GI+KK
Sbjct: 439 KRNIIVKTRERRKRDVRRKSGIPFDKYGELAEEVSAAYKDPEVVVRSCEVSGIAKKVAAF 498
Query: 404 RPVAVIKG 411
R + VIKG
Sbjct: 499 RGIGVIKG 506
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + + H + +F+++P G+G G + ++ L+E L+ G +W + GY W
Sbjct: 108 IRTNLMEKDVRPHLPEILDVLFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGW 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED E EE G++ A+P K+ ++KKRG PQ+
Sbjct: 168 EEDIERTEEGGKLKAANPEKIDEKSKKRGAPQL 200
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 422 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+F+++P G+G G + ++ L+E L+ G +W + GY W ED E E
Sbjct: 128 LFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTE 175
>gi|76801733|ref|YP_326741.1| RtcB-like protein 1 [Natronomonas pharaonis DSM 2160]
gi|76557598|emb|CAI49180.1| 3'-5' RNA ligase [Natronomonas pharaonis DSM 2160]
Length = 485
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/282 (40%), Positives = 160/282 (56%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D A G+E Q+ ++IH GSRG GHQV D L +E+A
Sbjct: 205 SGNHFLEVQRVTDVFDADIADAYGLE-ADQIVILIHCGSRGLGHQVCNDYLRDIEQAHSG 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L H FA F +DL
Sbjct: 264 LLSKLPDKELAAAPAGSQLAEDYYGAMCAAINFAWVNRQLITHQTRTVFADVFGEPWEDL 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H VDG+ K L VHRKG+TRAFP P +P Y+ GQPV+I G
Sbjct: 324 GMELLYDVAHNIAKKEVHDVDGEDKELYVHRKGATRAFPAGRPEVPSAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SYVL G E+ + +FGST HGAGR +SR +++ +V + L Q + ++ S
Sbjct: 384 SMGAGSYVLCGGEQSLDISFGSTAHGAGRLMSRTQAKDEFWGGDVQDDLRGQEVYVKAES 443
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP YK+V +VV A+GI K ++ PV IKG
Sbjct: 444 GATIAEEAPGVYKDVDEVVSVSDALGIGDKVVRVAPVCNIKG 485
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L +++FD +P G+G GI+ + ++ LE G+DW+ EGY D EHCE+ G
Sbjct: 122 EELVEALFDAVPTGLGGGGIVQGDRDTVDAVLERGVDWAREEGYAVKSDLEHCEDEGVRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ADPS VS +AK RG Q+
Sbjct: 182 DADPSAVSQKAKDRGRNQL 200
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ E L +++FD +P G+G GI+ + ++ LE G+DW+ EGY D EH E
Sbjct: 120 MEEELVEALFDAVPTGLGGGGIVQGDRDTVDAVLERGVDWAREEGYAVKSDLEHCE 175
>gi|300710830|ref|YP_003736644.1| hypothetical protein HacjB3_07335 [Halalkalicoccus jeotgali B3]
gi|448295160|ref|ZP_21485233.1| hypothetical protein C497_05742 [Halalkalicoccus jeotgali B3]
gi|299124513|gb|ADJ14852.1| hypothetical protein HacjB3_07335 [Halalkalicoccus jeotgali B3]
gi|445585130|gb|ELY39434.1| hypothetical protein C497_05742 [Halalkalicoccus jeotgali B3]
Length = 486
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+ + ++ V+IH GSRG GHQV TD L ++EK
Sbjct: 205 SGNHFLEVQRVTDVFREDVAEAYGLAE-DRIVVLIHCGSRGLGHQVCTDYLRKIEKRHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
E D++LA A S + + A F L H F + F +++
Sbjct: 264 LLAELPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLITHRTRAVFERVFGRDHEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 324 GMELLYDVAHNIAKKEVHEVDGEERELYVHRKGATRAFPAGHPEVPAAYREVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIRVA 368
+MG SYVL G + M ETFGST HGAGR +SR +++ ++V + L+ Q I ++
Sbjct: 384 SMGAGSYVLRGGSESMAETFGSTAHGAGRVMSRTQAKNEFWGEDVRDDLQDQDRIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI + + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDALGIGDRVARTFPVCNIKG 486
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F ++P G+G G++ +E L+ GM+W+L EGY D +HCE+ G
Sbjct: 122 EELVDALFANVPSGLGGGGVVESGIDTVEAILDRGMEWALEEGYAVPADLDHCEDEGVRE 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
++DP+ VS +AK RG Q+
Sbjct: 182 DSDPAAVSQKAKDRGKNQI 200
>gi|389848149|ref|YP_006350388.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|388245455|gb|AFK20401.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
Length = 503
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 161/283 (56%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG GHQ TD L ++EK
Sbjct: 222 SGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHAD 280
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
E D++LA A S + + A F L MH + FA F+ D+
Sbjct: 281 LLEELPDKELAAAPARSQLAEEYYGAMCAAINFAWVNRQLVMHRTREVFADVFDRDWRDM 340
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+ + L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 341 EMRLLYDVAHNIAKKEVHTVDGEDRELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 400
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SY+L G E + TFGST HGAGR +SR ++++ + V +L E Q I ++
Sbjct: 401 SMGAGSYILRGGESSLDLTFGSTAHGAGRLMSRTQAKQEYWGETVQEELREQQKIFVKAQ 460
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 461 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVVRTFPVCNIKG 503
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ IP G+G G++ +A +++ L GM+W+L GY +D HCE+ G +A
Sbjct: 141 LVDALFEAIPSGLGGGGVVTGDAETIDDILARGMEWALDAGYATEDDLAHCEDEGSRDDA 200
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +AK RG Q+
Sbjct: 201 RPEYVSQKAKDRGRNQI 217
>gi|292656831|ref|YP_003536728.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
volcanii DS2]
gi|448290831|ref|ZP_21481976.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
volcanii DS2]
gi|291371279|gb|ADE03506.1| RNA terminal phosphate cyclase operon orfB homolog, UPF0027 family
[Haloferax volcanii DS2]
gi|445577884|gb|ELY32304.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
volcanii DS2]
Length = 486
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG GHQ TD L ++E+
Sbjct: 205 SGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEQEHAD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E HMVDG+++ L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 EMRLLYDVAHNIAKKEVHMVDGEERELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G ++ + TFGST HGAGR +SR K+++ + V ++L E + I ++
Sbjct: 384 SMGAGSYVLRGGDQSLDLTFGSTAHGAGRLMSRTKAKQEYWGETVQDELREQEKIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 486
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L ++F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G
Sbjct: 120 HEEELVDALFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGF 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+A P VS +AK RG Q+
Sbjct: 180 RDDARPEFVSQKAKDRGRNQI 200
>gi|448618247|ref|ZP_21666592.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|445747802|gb|ELZ99257.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
Length = 486
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 161/283 (56%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG GHQ TD L ++EK
Sbjct: 205 SGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHAD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
E D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLEELPDKELAAAPARSQLAEEYYGAMCAAINFAWVNRQLVMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+ + L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 EMRLLYDVAHNIAKKEVHTVDGEDRELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SY+L G E + TFGST HGAGR +SR ++++ + V +L E Q I ++
Sbjct: 384 SMGAGSYILRGGESSLDLTFGSTAHGAGRLMSRTQAKQEYWGETVQEELREQQKIFVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVVRTFPVCNIKG 486
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ IP G+G G++ +A +++ L GM+W+L GY +D HCE+ G +A
Sbjct: 124 LVDALFEAIPSGLGGGGVVTGDAETIDDILARGMEWALDAGYATEDDLAHCEDEGSRDDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +AK RG Q+
Sbjct: 184 RPEYVSQKAKDRGRNQI 200
>gi|448306210|ref|ZP_21496119.1| hypothetical protein C494_00517 [Natronorubrum bangense JCM 10635]
gi|445598624|gb|ELY52679.1| hypothetical protein C494_00517 [Natronorubrum bangense JCM 10635]
Length = 488
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 168/283 (59%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ S G+E+ Q+ V+IH GSRG GHQ D L ++EK +
Sbjct: 207 SGNHFLEVQRVTDVFHDEVGSAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEKQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH + F + F+ + +++
Sbjct: 266 LLNKLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTREVFERVFDRSWEEM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQP++I G
Sbjct: 326 EMDLLYDVAHNIAKKEVHDVDGEERELYVHRKGATRAFPAGHPDVPEAYRDVGQPIIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIRVA 368
+MG SYVL G E M+ TFGST HGAGR +SR +++ +V ++LE+Q I ++
Sbjct: 386 SMGAGSYVLRGGENSMELTFGSTAHGAGRLMSRTQAKNEYWGGDVQDELEAQDQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRISDELGIGDKVARTFPVCNIKG 488
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ L S+F +IP G+G GI+ ++E L G+DW+L GY +D HCE+ G
Sbjct: 124 QELVDSLFANIPSGLGGGGIVESGVDTVDEILARGVDWALENGYAVEDDLLHCEDEGHRE 183
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSK+S +AK RG Q+
Sbjct: 184 EADPSKISQKAKDRGKNQI 202
>gi|167042796|gb|ABZ07514.1| putative uncharacterized protein family UPF0027, partial
[uncultured marine microorganism HF4000_ANIW137I15]
Length = 415
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 137/219 (62%), Gaps = 9/219 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ EIQ+V EI+D A G+ G + VMIH+GSRG GHQV TD L M
Sbjct: 196 QIGTLGSGNHFVEIQVVREIFDSRIADAFGLFP-GGITVMIHTGSRGLGHQVCTDFLGVM 254
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFN 243
EKAM R I DRQLACA ++S + +A+ A F + + F +
Sbjct: 255 EKAMVRYGIRLPDRQLACAPLDSPEGRAYLGAMQAAANFAWANRQCICGKVEEVFLRVLG 314
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
+P +L M +YDV+HNI K E+H V+GK++ + VHRKG+TRAFPP H +P DY+ GQ
Sbjct: 315 ISPRELGMATLYDVAHNIVKLEDHAVNGKKQKVAVHRKGATRAFPPGHEEVPADYRKVGQ 374
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSR 342
PVLI G MG S+VL GT M E FGSTCHGAGR LSR
Sbjct: 375 PVLIPGDMGRHSFVLAGTVGAMAECFGSTCHGAGRRLSR 413
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
EDK L ++F +P GVGS+G + + D L G W++ G+ + D + E
Sbjct: 115 EDK--IRPLVTALFQQVPSGVGSRGDLRLADGDKAPLLTQGARWAVGRGFGSSSDLPNVE 172
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
G + A P +VS +A +RG Q+
Sbjct: 173 SGGALAGAAPDEVSDKAFERGRRQI 197
>gi|52352411|gb|AAU43700.1| conserved hypothetical protein [uncultured archaeon GZfos26D8]
Length = 506
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 169/308 (54%), Gaps = 38/308 (12%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ +VDEI+D+ A + GIE+ GQV V+IH+G RGF H V + L E+ M +
Sbjct: 205 SGNHFLELGVVDEIFDERLAKEYGIEEKGQVTVLIHTGGRGFSHGVCSYYLRSFEREMSK 264
Query: 196 DN----IETNDRQLACARINSN------------KNKAFAKQFNTTPDDLDMHVIYDAFA 239
D I + +R+LACA ++S+ N AFA + + MH + F
Sbjct: 265 DTTLSKILSLERELACAYLSSDMGMDYFEAMCACANYAFANR------QIAMHWVRKVFE 318
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+D+ + ++YD++HNIAK EEH+V+GK+K L VHRKG+TRAFP +P Y+
Sbjct: 319 DVLRRKAEDMGIRLVYDIAHNIAKEEEHVVEGKRKKLCVHRKGATRAFPAGDARLPAVYR 378
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
GQPVLI G+MGT S++ GTE ETFGS HG+GR +SR + R EV +L
Sbjct: 379 NIGQPVLIPGSMGTRSFLAVGTETAKLETFGSCAHGSGREMSRTAAMRKYRGIEVREELA 438
Query: 360 SQGISIRVASPKL----------------VMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ I ++ + + EE +YK+ VV +C GI+K+
Sbjct: 439 KRNIIVKTRERRKRDVRRKRGIPFDKYGELAEEVSAAYKDPEVVVRSCEVSGIAKRVAAF 498
Query: 404 RPVAVIKG 411
R + VIKG
Sbjct: 499 RGIGVIKG 506
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
+ ++F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE G++ A
Sbjct: 124 ILDTLFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEGGKLKAA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
+P K+ ++KKRG PQ+
Sbjct: 184 NPEKIDEKSKKRGAPQL 200
>gi|448568288|ref|ZP_21637865.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
lucentense DSM 14919]
gi|448600772|ref|ZP_21656151.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
alexandrinus JCM 10717]
gi|445727238|gb|ELZ78852.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
lucentense DSM 14919]
gi|445734785|gb|ELZ86341.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
alexandrinus JCM 10717]
Length = 486
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG GHQ TD L ++E+
Sbjct: 205 SGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEQEHAD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E HMVDG+++ L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 EMRLLYDVAHNIAKKEVHMVDGEERELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G ++ + TFGST HGAGR +SR K+++ + V ++L E + I ++
Sbjct: 384 SMGAGSYVLRGGDQSLDLTFGSTAHGAGRLMSRTKAKQEYWGETVQDELREQEKIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 486
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + + H E L ++F+ +P G+G G++ +A +E+ L GM W++ GY
Sbjct: 108 MRTNLTYEDLQGHEEELVDALFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYAT 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G +A P VS +AK RG Q+
Sbjct: 168 DDDLAHCEDEGFRDDARPEFVSQKAKDRGRNQI 200
>gi|399576613|ref|ZP_10770368.1| hypothetical protein HSB1_24070 [Halogranum salarium B-1]
gi|399238057|gb|EJN58986.1| hypothetical protein HSB1_24070 [Halogranum salarium B-1]
Length = 492
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 162/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ G+E+ Q+ V+IH GSRG GHQ TD L ++EK
Sbjct: 211 SGNHFLEVQRVTDVFRPDVGEAFGLEE-DQIVVLIHCGSRGLGHQTCTDYLRRIEKEHAD 269
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH F + F +++
Sbjct: 270 LLADLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTRQVFERVFGRDWEEM 329
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+ + L VHRKG+TRAFP HP +P Y+ GQP++I G
Sbjct: 330 EMELLYDVAHNIAKKEIHTVDGEDRELYVHRKGATRAFPAGHPEVPKAYRDVGQPIIIPG 389
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ-GISIRVA 368
+MG SYVL G E+ M TFGST HGAGR +SR +++R + V ++L Q I ++
Sbjct: 390 SMGAGSYVLRGGEESMNLTFGSTAHGAGRVMSRTQAKREFWGETVQDELRDQEKIYVKAQ 449
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 450 SGATVAEEAPGVYKDVDEVVRVSDDLGIGDKVARTYPVCNIKG 492
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L S+F ++P G+G GI+ +E L GMDW+L GY +D HCE+ G
Sbjct: 128 EELVDSLFANVPSGLGGGGIVEEGIDTVEAILARGMDWALERGYATEDDLAHCEDEGMRP 187
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ADP VS +AK RG Q+
Sbjct: 188 DADPDAVSQKAKDRGKNQI 206
>gi|448281337|ref|ZP_21472643.1| hypothetical protein C500_02484 [Natrialba magadii ATCC 43099]
gi|445578759|gb|ELY33159.1| hypothetical protein C500_02484 [Natrialba magadii ATCC 43099]
Length = 520
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +I+D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 239 SGNHFLEVQRVTDIFDPEVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 297
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 298 LLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWESM 357
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 358 EMDLLYDVAHNIAKKEMHEVDGEERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 417
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ-GISIRVA 368
+MG +YVL G E M TFGST HGAGR +SR +++ +V ++LE Q I ++
Sbjct: 418 SMGAGNYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDVQDELEEQEQIYVKAQ 477
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 478 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 520
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E K L S+F +IP G+G G++ ++E L G+DW+L G+
Sbjct: 142 MRTNLTYDELKGQEAELVDSLFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAV 201
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G A P KVS +AK RG Q+
Sbjct: 202 EDDLLHCEDEGMREGAKPEKVSQKAKDRGKNQI 234
>gi|448735093|ref|ZP_21717311.1| hypothetical protein C450_17557 [Halococcus salifodinae DSM 8989]
gi|445798962|gb|EMA49347.1| hypothetical protein C450_17557 [Halococcus salifodinae DSM 8989]
Length = 485
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 166/282 (58%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+ + Q+ V+IH GSRG GHQV T+ ++E+A
Sbjct: 205 SGNHFLEVQRVTDVFREDVADAYGLTE-DQIVVLIHCGSRGLGHQVCTEYTREVEQAHPG 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
D++LA A S + + A + L MH + F + F+ + +D+
Sbjct: 264 LLDRLPDKELAAAPAGSQLAEEYYGAMCAAINYAWVNRQLIMHRTREVFERVFDRSWEDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H V+G+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 324 EMDLLYDVAHNIAKKEIHDVEGEERELYVHRKGATRAFPAGHPEVPSAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SYVL G E ++ TFGST HGAGR +SR +++ ++V + LE Q + ++ S
Sbjct: 384 SMGAGSYVLRGGEASLETTFGSTAHGAGRTMSRTQAKNEFWGEDVQDDLEEQKVYVKAQS 443
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EEAP YK+V +VV +GI + PV IKG
Sbjct: 444 GATVAEEAPGVYKDVDEVVRVSDELGIGDTVARTFPVCNIKG 485
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+A+ + H E L +S+F +IP G+G G++ +E LE GMDW+L EGY +D H
Sbjct: 114 YADVEGHEEELVESLFANIPSGLGGGGVVESGIDTVEAILERGMDWALEEGYAVEDDLAH 173
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
CE+ GR +ADP VS +AK RG Q+
Sbjct: 174 CEDEGRRPDADPGVVSQKAKDRGKNQI 200
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +S+F +IP G+G G++ +E LE GMDW+L EGY +D H E
Sbjct: 122 EELVESLFANIPSGLGGGGVVESGIDTVEAILERGMDWALEEGYAVEDDLAHCE 175
>gi|289580098|ref|YP_003478564.1| hypothetical protein Nmag_0414 [Natrialba magadii ATCC 43099]
gi|289529651|gb|ADD04002.1| protein of unknown function UPF0027 [Natrialba magadii ATCC 43099]
Length = 488
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +I+D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDIFDPEVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 266 LLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWESM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 326 EMDLLYDVAHNIAKKEMHEVDGEERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ-GISIRVA 368
+MG +YVL G E M TFGST HGAGR +SR +++ +V ++LE Q I ++
Sbjct: 386 SMGAGNYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDVQDELEEQEQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E K L S+F +IP G+G G++ ++E L G+DW+L G+
Sbjct: 110 MRTNLTYDELKGQEAELVDSLFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G A P KVS +AK RG Q+
Sbjct: 170 EDDLLHCEDEGMREGAKPEKVSQKAKDRGKNQI 202
>gi|307719286|ref|YP_003874818.1| hypothetical protein STHERM_c16050 [Spirochaeta thermophila DSM
6192]
gi|306533011|gb|ADN02545.1| hypothetical protein STHERM_c16050 [Spirochaeta thermophila DSM
6192]
Length = 477
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI +V++++D A +G+ + GQV + IH+GSRG GHQ+A D + +M M+
Sbjct: 197 SGNHFLEIDVVEKVFDPKKAQALGLFE-GQVVIWIHTGSRGLGHQIAMDYMEKMRPRMES 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I +R + + +++A+ + L H + +AF++ F D+L
Sbjct: 256 YGIPLFERDFVSLPVKAPQSQAYLGAMAAAANFAWVNRQLITHRVREAFSRVFRRPGDEL 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HNIAK E + VDG ++ LLVHRKG+TRAFP HP + ++ GQP+L+ G
Sbjct: 316 GLFLLYDVAHNIAKYEVYKVDGAERMLLVHRKGATRAFPAGHPALRGIFREVGQPILLPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
M SY+L GTE+ ++E+FGS HGAGR +SR +++ ++E+ L I +
Sbjct: 376 DMKRGSYILLGTERALEESFGSVAHGAGRQMSRHAAKKAFGFKEMQEDLARDEIRLYAVD 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP +YK+V VV G++ + RP+ VIKG
Sbjct: 436 RRRAQEEAPGAYKDVDTVVKPLVGEGLAVPVVRTRPLLVIKG 477
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R E K E L +F +P G+GS+G+ + ++ A+ G+ W+L +G
Sbjct: 100 IRTSLTAPEVKGVLEELGNILFATVPAGLGSRGLEKFSHKEARRAMRKGLGWALEKGMAM 159
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRG 543
ED E EE G + +ADP VS A RG
Sbjct: 160 EEDLEATEEEGCLKDADPQLVSDEALDRG 188
>gi|429192588|ref|YP_007178266.1| hypothetical protein Natgr_2668 [Natronobacterium gregoryi SP2]
gi|448326501|ref|ZP_21515855.1| hypothetical protein C490_13875 [Natronobacterium gregoryi SP2]
gi|429136806|gb|AFZ73817.1| hypothetical protein Natgr_2668 [Natronobacterium gregoryi SP2]
gi|445611501|gb|ELY65251.1| hypothetical protein C490_13875 [Natronobacterium gregoryi SP2]
Length = 488
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 163/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E++D+ G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTEVFDEGVGEAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + K N + L MH F + F+ +++
Sbjct: 266 LLNQLPDKELAAAPAGSQLAGDYYKAMNAAINFAWVNRQLIMHRTRQVFERVFDRPWEEM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+Q+ L VHRKG+TRAFP H +P Y+ GQPV+I G
Sbjct: 326 EMELLYDVAHNIAKKEVHDVDGEQRELFVHRKGATRAFPAGHHEVPKAYRDVGQPVIIPG 385
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIRVA 368
+MG +YVL G E M TFGST HGAGR +SR +++ ++ +LE Q I ++
Sbjct: 386 SMGAGNYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDIQQELEEQDQIYVKAQ 445
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 446 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L S+F ++P G+G GI+ ++E LE G++W++ G+ D HCE+ G
Sbjct: 124 EELVDSLFANVPSGLGGGGIVEAGVDTVDEILERGVEWAVENGHGVEGDLLHCEDEGHRE 183
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +K+S +AK RG Q+
Sbjct: 184 EADATKISQKAKDRGKNQI 202
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY------IWAEDKEHFE 469
E L S+F ++P G+G GI+ ++E LE G++W++ G+ + ED+ H E
Sbjct: 124 EELVDSLFANVPSGLGGGGIVEAGVDTVDEILERGVEWAVENGHGVEGDLLHCEDEGHRE 183
Query: 470 -----RLAQSMFDHIPVGVGSKG 487
+++Q D +GS G
Sbjct: 184 EADATKISQKAKDRGKNQIGSLG 206
>gi|448611883|ref|ZP_21662313.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
gi|445742644|gb|ELZ94138.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
Length = 486
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 160/283 (56%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG GHQ TD L ++EK
Sbjct: 205 SGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHAD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+ + L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 EMRLLYDVAHNIAKKEVHTVDGEDRELYVHRKGATRAFPAGRPELPPAYAGVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G + + TFGST HGAGR +SR K+++ + V +L E Q I ++
Sbjct: 384 SMGAGSYVLRGGDSSLDLTFGSTAHGAGRLMSRTKAKQEFWGETVQEELREQQKIFVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVVRTFPVCNIKG 486
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ IP G+G G++ +A +++ L GM+W+L GY +D HCE+ G +A
Sbjct: 124 LVDALFEAIPSGLGGGGVVKGDAETIDDILAHGMEWALDAGYATDDDLAHCEDEGFRDDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +AK RG Q+
Sbjct: 184 HPEYVSQKAKDRGRNQI 200
>gi|448385445|ref|ZP_21563951.1| hypothetical protein C478_16372 [Haloterrigena thermotolerans DSM
11522]
gi|445656940|gb|ELZ09772.1| hypothetical protein C478_16372 [Haloterrigena thermotolerans DSM
11522]
Length = 488
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 163/285 (57%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+ + Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDGEVGEAYGLSE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHEG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D +LA A S + + N + L MH F + F+ + +++
Sbjct: 264 LLNQLPDTELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
DMH++YDV+HNIAK E H V DG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 DMHLLYDVAHNIAKKETHTVGEDGEERELYVHRKGATRAFPAGHPEVPSAYRDVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V LE Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKDEFWGGDVQQDLEEQDRIYVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 444 AQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 488
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F ++P G+G GI+ +EE L G+DW+L G+
Sbjct: 108 MRTNLTYDEVQGREEELVDSLFANVPSGLGGGGIVEAGVDTVEEILARGVDWALENGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 168 EDDLLHCEDEGMREGADPDKVSQKAKDRGKNQI 200
>gi|448578377|ref|ZP_21643812.1| rtcB-like protein [Haloferax larsenii JCM 13917]
gi|445726918|gb|ELZ78534.1| rtcB-like protein [Haloferax larsenii JCM 13917]
Length = 486
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 161/283 (56%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG GHQ TD L ++EK
Sbjct: 205 SGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHAD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ ++
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWREM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
DM ++YDV+HNIAK E H VDG+ + L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 DMRLLYDVAHNIAKKEVHEVDGEDRELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G + + TFGST HGAGR +SR K+++ + V +L E Q I ++
Sbjct: 384 SMGAGSYVLRGGDSSLDLTFGSTAHGAGRLMSRTKAKQEYWGETVQEELREQQKIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVVRTFPVCNIKG 486
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++FD IP G+G G++ +A +++ L GM+W++ GY +D HCE+ G +A
Sbjct: 124 LVEALFDAIPSGLGGGGVVTGDAETIDDILARGMEWAVDAGYATEDDLAHCEDEGFRDDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +AK RG Q+
Sbjct: 184 RPEFVSQKAKDRGRNQI 200
>gi|374724729|gb|EHR76809.1| RtcB family protein [uncultured marine group II euryarchaeote]
Length = 491
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 172/291 (59%), Gaps = 19/291 (6%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V + D A K G+ + GQ+ MIHSGSRG GHQV +D + +E
Sbjct: 205 SGNHFLELQTVGKTVDSETAEKWGLYE-GQLVAMIHSGSRGLGHQVCSDHVRALESRYSS 263
Query: 196 DN---IETN------DRQLACARINSNKNKAFAKQFNTTPDDLD------MHVIYDAFAK 240
N +E + DRQLA A +S + +++ N + H + +
Sbjct: 264 SNGMWVEESWGYSLPDRQLAAAPFHSKEGQSYFDAMNAAANFAFANRSALAHRLREVLRL 323
Query: 241 QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
+ T D + V+YDV+HNIAK E H +DG + + VHRKG+TRAF H + Y
Sbjct: 324 ELGT---DGEARVLYDVAHNIAKVEHHHIDGVECKVCVHRKGATRAFGGDHSDLTGHYAQ 380
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
+GQPVL+ G MGT S++L G +KG + FGS+CHGAGRALSR K+++ +D + + +LE+
Sbjct: 381 SGQPVLVPGDMGTGSWLLAGPKKGTNQAFGSSCHGAGRALSRTKAKKTIDGKALKLELEA 440
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+GI I ++P ++ EEAP++YK+V +V+ +++ +L P+AVIKG
Sbjct: 441 RGIRIHASTPNVLAEEAPDAYKDVDEVIALTERADLARPVVRLNPLAVIKG 491
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 464 DKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEE 523
D + ++LA + IP G KG + +N + L++ ++ G ++ G+ + ED H E
Sbjct: 118 DIPNLKKLAGRLAGRIPAGASGKGGLEINNQQLDDLIQRGAHAAVDFGFGFDEDLAHIES 177
Query: 524 YGRMLNADPSKVSMRAKKRGL 544
G ML+ + + +S RA++RGL
Sbjct: 178 KG-MLHTEEAAISTRARERGL 197
>gi|433590971|ref|YP_007280467.1| hypothetical protein Natpe_1666 [Natrinema pellirubrum DSM 15624]
gi|448334504|ref|ZP_21523679.1| hypothetical protein C488_13881 [Natrinema pellirubrum DSM 15624]
gi|433305751|gb|AGB31563.1| hypothetical protein Natpe_1666 [Natrinema pellirubrum DSM 15624]
gi|445619836|gb|ELY73353.1| hypothetical protein C488_13881 [Natrinema pellirubrum DSM 15624]
Length = 965
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 163/285 (57%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+ + Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 682 SGNHFLEVQRVTDVFDGEVGEAYGLSE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHEG 740
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D +LA A S + + N + L MH F + F+ + +++
Sbjct: 741 LLNQLPDTELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 800
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
DMH++YDV+HNIAK E H V DG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 801 DMHLLYDVAHNIAKKETHTVGEDGEERELYVHRKGATRAFPAGHPEVPSAYRDVGQPVII 860
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V LE Q I ++
Sbjct: 861 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKDEFWGGDVQQDLEEQSQIYVK 920
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 921 AQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 965
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L S+F ++P G+G GI+ +EE L G+DW+L G+ +D HCE+ G
Sbjct: 599 EELVDSLFANVPSGLGGGGIVEAGVDTVEEILARGVDWALENGHAVEDDLLHCEDEGMRE 658
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP KVS +AK RG Q+
Sbjct: 659 GADPDKVSQKAKDRGKNQI 677
>gi|153003854|ref|YP_001378179.1| hypothetical protein Anae109_0986 [Anaeromyxobacter sp. Fw109-5]
gi|152027427|gb|ABS25195.1| protein of unknown function UPF0027 [Anaeromyxobacter sp. Fw109-5]
Length = 479
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 216/448 (48%), Gaps = 75/448 (16%)
Query: 35 PGVKQIANVAALPGIVGRSVGLPDV---HSVP---------------------------- 63
P ++Q+ANVA LPGI+ S+ +PD+ + P
Sbjct: 36 PALQQVANVAHLPGILRFSLAMPDIHWGYGFPIGGVAAMDVERGAVSPGGVGYDINCGVR 95
Query: 64 -STQWLSDNTMR------SSNIWKRSPLTLGAGNHYAEI--QIVDEIYD---KWAASK-- 109
T L + +R ++ +++ P +GA + + +DE+ + +WA +
Sbjct: 96 VLTTALEEEDVRARLHAVTAQLFRDVPTGVGASRAIPTLSDRELDEVLEGGARWAVRRGF 155
Query: 110 MGIEDVGQVCVMIHSGSRGFG---------------HQVAT--AGNHYAEIQIVDEIYDK 152
D + C G R G Q+ T +GNH+ E+ V E+YD
Sbjct: 156 AAASDDAERC---EEGGRLAGADASAVSARARARGADQLGTLGSGNHFLEVDRVAEVYDP 212
Query: 153 WAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR---DNIETNDRQLACAR 209
AA G+ G+V + IHSGSRG G+QV + + ++ + D + D QLA A
Sbjct: 213 QAAEAFGLVP-GRVALQIHSGSRGLGYQVCDEFVAEIARRRPEFGPDYADLPDPQLAAAP 271
Query: 210 INSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAK 263
I S + + A F + + A + DL V+YDV HN+AK
Sbjct: 272 IGSALGQRYLGAMQAAANFAWANRQVMTGLAVRALLHVLRISERDLGARVLYDVCHNVAK 331
Query: 264 TEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK 323
EEH ++G ++ +LVHRKG+TR F P +P Y+ GQPVLI G MG SYVL GTE+
Sbjct: 332 LEEHDIEGARRRVLVHRKGATRCFGPGDARVPEPYRGVGQPVLIPGDMGRYSYVLAGTER 391
Query: 324 GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKN 383
M++TFGS+CHGAGR LSR ++ R + + +L ++GI + K + EE ++YK+
Sbjct: 392 AMRDTFGSSCHGAGRLLSRGEALRRGRGRSIAAELAARGIEVISRGKKTLAEEMSDAYKD 451
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V VV A GIS+ +L P+ VIKG
Sbjct: 452 VAQVVAVMDAAGISRLVARLEPMGVIKG 479
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGYIWA-EDKEHCE 522
+ + +F +P GVG+ IP ++ R+L+E LE G W++R G+ A +D E CE
Sbjct: 107 RARLHAVTAQLFRDVPTGVGASRAIPTLSDRELDEVLEGGARWAVRRGFAAASDDAERCE 166
Query: 523 EYGRMLNAD 531
E GR+ AD
Sbjct: 167 EGGRLAGAD 175
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 422 MFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGYIWAED 464
+F +P GVG+ IP ++ R+L+E LE G W++R G+ A D
Sbjct: 117 LFRDVPTGVGASRAIPTLSDRELDEVLEGGARWAVRRGFAAASD 160
>gi|424812828|ref|ZP_18238068.1| hypothetical protein J07AB56_13630 [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757050|gb|EGQ40633.1| hypothetical protein J07AB56_13630 [Candidatus Nanosalinarum sp.
J07AB56]
Length = 466
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 161/282 (57%), Gaps = 12/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDE +D A+ G+E+ GQV VMIHSGSRG GHQ T+ + + EK
Sbjct: 191 SGNHFLEVQVVDETFDADTAAAYGLEE-GQVVVMIHSGSRGLGHQTCTEYVRRFEKEYPD 249
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLD------MHVIYDAFAKQFNTTPDDL 249
D L A + + + + + + ++ + FN
Sbjct: 250 VADGLEDVDLIYAPLQEQPAQDYRDAMYAAANYAWANRQGITYGVRESLQELFNA----- 304
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D ++YDV HNIAK E H VDG Q+ L+VHRKG+TRAFP +P Y+ GQPVLI G
Sbjct: 305 DAELVYDVCHNIAKQETHHVDGNQRELMVHRKGATRAFPAGREEVPKTYRQVGQPVLIPG 364
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SYVL+G E+ ++ +FGS HGAGR SR +++ + + +LE G+++ S
Sbjct: 365 SMGARSYVLSGGERSLEMSFGSAAHGAGRLKSRTQAKEEHSGKRLQKQLERDGVTVEARS 424
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + EEAP++YK++ +VV H +GI ++ + PV IKG
Sbjct: 425 VETIEEEAPDAYKDIDEVVRVSHELGIGRRVAAMEPVVNIKG 466
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+RLA ++ IP G+G GI+ + +L L+ G++W + GY D +CEE GR L
Sbjct: 109 QRLANILYSKIPAGLGGGGIVDTSREELHRVLDEGVEWMVENGYGREGDLRNCEENGR-L 167
Query: 529 NADPSKVSMRAKKRGLPQV 547
D KV +AK+RG Q+
Sbjct: 168 PGDHRKVPDKAKERGNGQI 186
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
+RLA ++ IP G+G GI+ + +L L+ G++W + GY D + E +
Sbjct: 109 QRLANILYSKIPAGLGGGGIVDTSREELHRVLDEGVEWMVENGYGREGDLRNCEENGRLP 168
Query: 476 FDHIPV 481
DH V
Sbjct: 169 GDHRKV 174
>gi|448589678|ref|ZP_21649837.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
gi|445736106|gb|ELZ87654.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
Length = 487
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 160/278 (57%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E+YD AA+ GI D+ ++ VMIH+GSRG GHQ + + + E+A
Sbjct: 211 SGNHFLEVQRVSEVYDSAAAAAFGI-DLDEIVVMIHAGSRGLGHQTCSHYIDEFERAYPD 269
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
+ QL A ++ + A + V+ A + F+ ++ D+ +
Sbjct: 270 LAESLPNEQLVYAPLSDRLAGEYRSAMNAAANFAWANRQVMTQAVREVFSDLFEEADVQL 329
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDV HNIA E H V ++TLLVHRKG+TRA P HP +P Y GQPV + G MG+
Sbjct: 330 VYDVGHNIATEEHHAVGDDEQTLLVHRKGATRALPAGHPDVPDAYADIGQPVFVPGDMGS 389
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL G + ++ +FGS HGAGRA SR ++ R E+ L ++GI +R S + +
Sbjct: 390 RSYVLAGGSRSLERSFGSAPHGAGRAKSRTQASREYAAGELQQALRARGIFVRAQSGETL 449
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EE+P +YKNV +VV CH +G+ K + P+A IKG
Sbjct: 450 TEESPGAYKNVDEVVHVCHELGLGTKVAQTTPLANIKG 487
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G + + LA +F IP G+G + + D+ LE G++W L EG+
Sbjct: 115 LRTGLTFQDVAGRESMLADRLFQTIPTGLGPGSSLDTDISDVRGVLETGVEWLLNEGHAR 174
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D EHCEE GR L DP+ V A KRG+ QV
Sbjct: 175 KADLEHCEENGR-LPGDPNAVPTEALKRGVDQV 206
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 22/135 (16%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFD 477
LA +F IP G+G + + D+ LE G++W L EG+ D EH E +
Sbjct: 131 LADRLFQTIPTGLGPGSSLDTDISDVRGVLETGVEWLLNEGHARKADLEHCEENGR---- 186
Query: 478 HIPVGVGSKGIIPMNARDLEEALEMGMDW--SLREGYIWAEDKEHCEEYGRM------LN 529
+P G +P EAL+ G+D SL G + E + E Y ++
Sbjct: 187 -LP---GDPNAVPT------EALKRGVDQVGSLGSGNHFLEVQRVSEVYDSAAAAAFGID 236
Query: 530 ADPSKVSMRAKKRGL 544
D V + A RGL
Sbjct: 237 LDEIVVMIHAGSRGL 251
>gi|157363789|ref|YP_001470556.1| hypothetical protein Tlet_0926 [Thermotoga lettingae TMO]
gi|157314393|gb|ABV33492.1| protein of unknown function UPF0027 [Thermotoga lettingae TMO]
Length = 465
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 171/288 (59%), Gaps = 27/288 (9%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ EIQ V+ I+DK A GI + GQV V IH GSRGFGHQ+ATD + M +
Sbjct: 193 AGNHFIEIQKVERIFDKDTADIFGIFE-GQVAVCIHCGSRGFGHQIATDYIQIMRDNLSS 251
Query: 196 DNIETNDRQLACA------------RINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFN 243
N D+QL A +N N AFA + + ++I AF K F
Sbjct: 252 HNKNLPDKQLINAPFSHPIGQKYFSAMNCAANYAFANR------QMISYMIQLAFHKTFP 305
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
+ +M ++YDV+HNIAK EE+ +++ ++VHRKG+TR+ + L+P + TGQ
Sbjct: 306 SK----NMWLLYDVAHNIAKIEEY----EKRKMIVHRKGATRSLGAGNHLLPQKFIETGQ 357
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVLI G+MG+ SY+L G +K Q ++ ST HGAGR L R + + L+Y++++N+L+ + I
Sbjct: 358 PVLIPGSMGSASYILVGAKKAEQISYASTAHGAGRLLGRRAALKTLNYEKLMNELKQKNI 417
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + ++EEAP YK+V VVD VGI+++ +L P+ V+KG
Sbjct: 418 EVMSKGKRTLIEEAPAVYKDVDKVVDIVEKVGIARRVARLIPMGVVKG 465
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + +L + ++ +P GVG+ G + +N +DL G W++ +GY D E+ E
Sbjct: 104 EARPVLRKLIEEIYRSVPAGVGASGAVKINKKDLRSICIYGAQWAVDQGYGSKSDLENIE 163
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQVS 548
+ G++ ADP VS +A +RGL ++S
Sbjct: 164 DGGKLSPADPEDVSKKAFERGLDELS 189
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 417 RLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+L + ++ +P GVG+ G + +N +DL G W++ +GY D E+ E
Sbjct: 111 KLIEEIYRSVPAGVGASGAVKINKKDLRSICIYGAQWAVDQGYGSKSDLENIE 163
>gi|448583326|ref|ZP_21646682.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
gibbonsii ATCC 33959]
gi|445729555|gb|ELZ81150.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
gibbonsii ATCC 33959]
Length = 486
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 165/283 (58%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG GHQ TD L ++EK K
Sbjct: 205 SGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHKD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
E D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDELPDKELAAAPAGSALAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP P +P Y GQPV+I G
Sbjct: 324 EMRLLYDVAHNIAKKEVHEVDGEERELYVHRKGATRAFPAGRPELPPAYADVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G ++ + TFGST HGAGR +SR K+++ + V ++L E + I ++
Sbjct: 384 SMGAGSYVLRGGDQSLDLTFGSTAHGAGRLMSRTKAKQEYWGETVQDELREQEKIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 486
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L ++F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G
Sbjct: 120 HEEELVDALFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGF 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+A P VS +AK RG Q+
Sbjct: 180 RDDARPEFVSQKAKDRGRNQI 200
>gi|448410863|ref|ZP_21575491.1| hypothetical protein C475_14213 [Halosimplex carlsbadense 2-9-1]
gi|445671179|gb|ELZ23772.1| hypothetical protein C475_14213 [Halosimplex carlsbadense 2-9-1]
Length = 487
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +IY + A+ G+E QV V+IH GSRG GHQV TD L ++E+A
Sbjct: 205 SGNHFLEVQRVTDIYREDVAADFGLES-DQVVVLIHCGSRGLGHQVCTDYLREIEQAHSG 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + F F+ + +++
Sbjct: 264 LLSQLPDKELAAAPAGSQLAEDYYGAMCAAINFAWVNRQLIMHRTREVFETVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDG-KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+M ++YDV+HNIAK E H V+G + + + VHRKG+TRAFP P +P Y+ GQP+L+
Sbjct: 324 EMDLLYDVAHNIAKKETHEVEGGEDREVYVHRKGATRAFPAGRPEVPPAYRDVGQPILLP 383
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRV 367
G+MG SYVL G E+ + ETFGST HGAGR +SR ++++ +V + L E + I ++
Sbjct: 384 GSMGAGSYVLRGGEQSLTETFGSTAHGAGRLMSRTQAKQEFWGGDVQDDLREGEQIYVKA 443
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+GI + + PV IKG
Sbjct: 444 QSGATVAEEAPGVYKDVDEVVRVSDALGIGDRVARTFPVCNIKG 487
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F ++P G+G G+ + D+E L+ GM+W+L EG ED EHCE+ G
Sbjct: 122 EELVDALFANVPSGLGGGGVYEGSIDDVEAILDRGMEWALEEGVAVPEDLEHCEDEGVRH 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
++DPS VS +AK RG Q+
Sbjct: 182 DSDPSTVSQKAKDRGKNQI 200
>gi|386347393|ref|YP_006045642.1| hypothetical protein [Spirochaeta thermophila DSM 6578]
gi|339412360|gb|AEJ61925.1| protein of unknown function UPF0027 [Spirochaeta thermophila DSM
6578]
Length = 477
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI +V++++D A +G+ + GQV + IH+GSRG GHQ+A D + +M M+
Sbjct: 197 SGNHFLEIDVVEKVFDPQKAKALGLFE-GQVVIWIHTGSRGLGHQIAMDYMEKMRPRMES 255
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I +R + + +++A+ + L H + +AF++ F D+L
Sbjct: 256 YGIPLFERDFVSLPVKAPQSQAYLGAMAAAANFAWVNRQLITHRVREAFSRVFRRPWDEL 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HNIAK E + VDG ++ LVHRKG+TRAFP HP + ++ GQP+L+ G
Sbjct: 316 GLFLLYDVAHNIAKYEVYEVDGAERMFLVHRKGATRAFPAGHPALRGIFREVGQPILLPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
M SYVL GT++ ++E+FGS HGAGR +SR +++ ++E+ L + I +
Sbjct: 376 DMKRGSYVLLGTDRALKESFGSVAHGAGRQMSRHAAKKAFGFKEMQEDLAREEIRLYAVD 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP +YK+V VV G++ + RP+ VIKG
Sbjct: 436 RRRAQEEAPGAYKDVDAVVKPLVGEGLAVPVVRTRPLLVIKG 477
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R E K E + +F +P G+GS+G+ + ++ A++ G+ W+L +G
Sbjct: 100 IRTSLTAPEVKRVLEEIGNILFATVPAGLGSRGLEKFSHKEARRAMKKGLGWALEKGMAV 159
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRG 543
ED E EE G + +ADP VS A RG
Sbjct: 160 EEDLEATEEEGCLRDADPQLVSDEALDRG 188
>gi|448298691|ref|ZP_21488719.1| hypothetical protein C496_04063 [Natronorubrum tibetense GA33]
gi|445591361|gb|ELY45567.1| hypothetical protein C496_04063 [Natronorubrum tibetense GA33]
Length = 490
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 164/285 (57%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D + G+E+ Q+ V+IH GSRG GHQ D L ++EK +
Sbjct: 207 SGNHFLEVQRVTDVFDGDVGTAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEKQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A S + + N + L MH F + F+ + ++
Sbjct: 266 LLDQLPDRELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWQEM 325
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+M ++YDV+HNIAK E H+VD G ++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 326 EMDLLYDVAHNIAKKETHVVDDEGTERELYVHRKGATRAFPAGHPEVPNAYRDVGQPVII 385
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG-ISIR 366
G+MG SY+L G E M TFGST HGAGR +SR +++ +V +LE Q I ++
Sbjct: 386 PGSMGAGSYILRGGENSMDLTFGSTAHGAGRLMSRTQAKDEFWGGDVQQELEDQDQIYVK 445
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI + + PV IKG
Sbjct: 446 AQSGATVAEEAPGVYKDVDEVVRVSDELGIGDRVARTYPVCNIKG 490
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + + L S+F ++P G+G GI+ ++E L G+DW+L G+
Sbjct: 110 MRTNLTYDELQGNERELVDSLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAV 169
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED HCE+ G ADP KVS +AK RG Q+
Sbjct: 170 EEDLLHCEDEGMREGADPEKVSQKAKDRGKNQI 202
>gi|383621929|ref|ZP_09948335.1| hypothetical protein HlacAJ_11331 [Halobiforma lacisalsi AJ5]
gi|448702855|ref|ZP_21700212.1| hypothetical protein C445_19767 [Halobiforma lacisalsi AJ5]
gi|445776948|gb|EMA27924.1| hypothetical protein C445_19767 [Halobiforma lacisalsi AJ5]
Length = 503
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 168/298 (56%), Gaps = 23/298 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDVFDDAVGDAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + K N + L MH F + F+ + +++
Sbjct: 266 LLNQLPDKELAAAPAGSQLAEDYYKAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 325
Query: 250 DMHVIYDVSHNIAKTEEHMV----------DG-----KQKTLLVHRKGSTRAFPPHHPLI 294
DMH++YDV+HNIAK E H V DG +++ L VHRKG+TRAFP HP +
Sbjct: 326 DMHLLYDVAHNIAKKETHAVGVGPEGRPVRDGDAVEHEERELYVHRKGATRAFPAGHPEV 385
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y+ GQPV+I G+MG SYVL G E M TFGST HGAGR +SR +++ +V
Sbjct: 386 PKAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEYWGGDV 445
Query: 355 LNKLESQ-GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++LE Q I ++ S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 446 QDELEQQEQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 503
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L S+F ++P G+G GI+ +EE LE G+DW+L G+ ED HCE+ G
Sbjct: 124 EELVDSLFANVPSGLGGGGIVKAGVDTVEEILERGVDWALENGHAVEEDLLHCEDEGVRT 183
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SK+S +AK RG Q+
Sbjct: 184 EADASKISQKAKDRGKNQI 202
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L S+F ++P G+G GI+ +EE LE G+DW+L G+ ED H E
Sbjct: 124 EELVDSLFANVPSGLGGGGIVKAGVDTVEEILERGVDWALENGHAVEEDLLHCE 177
>gi|448738949|ref|ZP_21720969.1| hypothetical protein C451_15493 [Halococcus thailandensis JCM
13552]
gi|445800763|gb|EMA51111.1| hypothetical protein C451_15493 [Halococcus thailandensis JCM
13552]
Length = 485
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 165/282 (58%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+ Q+ V+IH GSRG GHQV T+ ++E+A
Sbjct: 205 SGNHFLEVQRVTDVFREGVADSYGL-SADQIVVLIHCGSRGLGHQVCTEYTREVEQAHPE 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A + L M F + F+ + +++
Sbjct: 264 LLDQLPDKELAAAPAGSQLAEEYYGAMCAAINYAWVNRQLIMDRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M+++YDV+HNIAK E+H +DG+++ L VHRKG+TRAFP H +P Y+ GQPV+I G
Sbjct: 324 EMNLLYDVAHNIAKKEDHEIDGEERELYVHRKGATRAFPAGHEEVPRAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SYVL G E M+ TFGST HGAGR +SR +++ ++V ++L Q + ++ S
Sbjct: 384 SMGAGSYVLRGGESSMETTFGSTAHGAGRTMSRTQAKDEFWGEDVQDELRGQKVYVKAQS 443
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EEAP YK+V +VV +GI + PV IKG
Sbjct: 444 GATVAEEAPGVYKDVDEVVRVSDELGIGDTVARTFPVCNIKG 485
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L +S+F ++P G+G G++ + +EE L+ G++W+L EG+ +D HCE+ GR
Sbjct: 120 HEEELVESLFANVPSGLGGGGVVESDVETVEEILDRGVEWALDEGHAVEDDLAHCEDEGR 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ADP+ VS +AK RG Q+
Sbjct: 180 RPDADPAVVSQKAKDRGKNQI 200
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +S+F ++P G+G G++ + +EE L+ G++W+L EG+ +D H E
Sbjct: 122 EELVESLFANVPSGLGGGGVVESDVETVEEILDRGVEWALDEGHAVEDDLAHCE 175
>gi|452207430|ref|YP_007487552.1| 3'-5' RNA ligase [Natronomonas moolapensis 8.8.11]
gi|452083530|emb|CCQ36841.1| 3'-5' RNA ligase [Natronomonas moolapensis 8.8.11]
Length = 485
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 158/282 (56%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V E++D A G+E QV V+IH GSRG GHQ+ T+ L ++E
Sbjct: 205 SGNHFLEVQRVAEVFDPETAEAYGLE-ADQVVVLIHCGSRGLGHQLCTEYLRRIETTHSG 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
D++LA A S + + A F L H FA F ++L
Sbjct: 264 LVDALPDKELAAAPAGSQLAEEYYGAMCAATNFAWVNRQLITHRTRTVFADVFGEPWEEL 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK E H VDG+ + L VHRKG+TRAFP P +P Y+ GQPV+I G
Sbjct: 324 GMELLYDVAHNIAKKEVHDVDGEDRELYVHRKGATRAFPAARPEVPDAYRDVGQPVVIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SYVL G + +FGST HGAGR +SR +++ +V ++LE + + ++ S
Sbjct: 384 SMGAGSYVLRGGANSLDVSFGSTAHGAGRLMSRTRAKNEFRGGDVQSELEGREVYVKAQS 443
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ EEAP YK+V +VV A+GI ++ P+ IKG
Sbjct: 444 GATIAEEAPGVYKDVDEVVRVSEALGIGDPVVRVEPICNIKG 485
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ +P G+G G++ + LE ALE G++W L GY D EHCE+ G +A
Sbjct: 124 LVDALFEAVPSGLGGGGVLEGDHGILESALERGVEWCLEAGYAVESDLEHCEDNGVRRDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
DP V RAK RG Q+
Sbjct: 184 DPEAVPQRAKDRGQNQM 200
>gi|169830673|ref|YP_001716655.1| hypothetical protein Daud_0477 [Candidatus Desulforudis audaxviator
MP104C]
gi|169637517|gb|ACA59023.1| protein of unknown function UPF0027 [Candidatus Desulforudis
audaxviator MP104C]
Length = 473
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 165/281 (58%), Gaps = 14/281 (4%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E Q V E+ + A + G+ GQ+ VMIH+GSRGFGHQ+ TD A K+
Sbjct: 199 GNHFIEFQEVAELLEPALAERWGLFP-GQLTVMIHTGSRGFGHQICTDFSRSHVTAAKKY 257
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
IE ++ LACA NS + + + A F L H + AFA F P+ L
Sbjct: 258 GIELPNKGLACAPSNSPEGRQYFQAMACAVNFAFANRHLISHDVGRAFADVFRKEPEKLG 317
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK E H G +K +LVHRKG+TRA PP H P Y+ TG P LI G+
Sbjct: 318 FGLVYDVAHNIAKWERH---GGRK-VLVHRKGATRALPPGHEDNPRPYRETGHPALIPGS 373
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYVL GTE+ TF S HGAGR LSR + R + ++ + + +IR +
Sbjct: 374 MGTSSYVLAGTERAAA-TFFSVNHGAGRVLSRGAAERTISREQFEESMGAVLYNIR--NF 430
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K +++E+P +YK+V VV T +G+++K +LRP+AVIKG
Sbjct: 431 KEIVDESPLAYKDVDQVVQTLAEIGLTRKVARLRPLAVIKG 471
>gi|448414133|ref|ZP_21577272.1| hypothetical protein C474_00742 [Halosarcina pallida JCM 14848]
gi|445682426|gb|ELZ34843.1| hypothetical protein C474_00742 [Halosarcina pallida JCM 14848]
Length = 489
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 164/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++Y A++ G+E Q+ V+IH GSRG GHQV +D L ++EK
Sbjct: 208 SGNHFLEVQRVTDVYRDDVAAEFGLE-ADQIVVLIHCGSRGLGHQVCSDYLRRIEKEHGD 266
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
D++LA A S + + A F L MH F + F + +
Sbjct: 267 LLDSLPDKELAAAPAGSRLAEEYYGAMCAAINFAWVNRQLIMHRTRRVFERVFGRDWEAM 326
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP P +P Y+ GQPV+I G
Sbjct: 327 EMDLLYDVAHNIAKKEVHDVDGEERELYVHRKGATRAFPAGRPELPSTYRDVGQPVIIPG 386
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G E+ + TFGST HGAGR +SR ++++ + V ++L + Q I ++
Sbjct: 387 SMGAGSYVLRGGERSLDLTFGSTAHGAGRTMSRTQAKQEYWGETVRDELRDQQKIYVKAQ 446
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 447 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 489
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 474 SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 533
++F ++P G+G GI+ + +E L G+DW+L G+ D HCE+ GR +ADP
Sbjct: 130 ALFANVPSGLGGGGIVQGDVDAVEGVLSRGVDWALEHGHAVEADLAHCEDEGRRPDADPD 189
Query: 534 KVSMRAKKRGLPQV 547
VS +AK RG Q+
Sbjct: 190 AVSQKAKDRGKNQL 203
>gi|89519333|gb|ABD75810.1| hypothetical protein [uncultured bacterium]
Length = 432
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 138/217 (63%), Gaps = 7/217 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI +DEIYD AS +G+E + V++H+GSRGFG+QV ++L M +A ++
Sbjct: 206 SGNHFVEIDYIDEIYDPAIASALGLER-DAIAVVVHTGSRGFGYQVCDESLPAMLEASRK 264
Query: 196 DNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DRQL CA INS + + A A + + H + F +P DL
Sbjct: 265 YGICLPDRQLCCAPINSQEGQRYFSAMACAANYAFANRQIITHWVRKTFEDVLQVSPRDL 324
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M+++YDV+HNIAK E + + G Q+ + VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 325 RMNLVYDVAHNIAKFETYDIGGTQRKVCVHRKGATRAFPAGHPDVPRAYREIGQPVLIPG 384
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSR 346
MG CSYVL GT+ + +TFGSTCHGAGR +SR +++
Sbjct: 385 DMGRCSYVLVGTDSALHDTFGSTCHGAGRVMSRKRAK 421
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGSK-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
L ++F +IP GVGSK + + +D L G +W++ GY D +H EE G +
Sbjct: 124 LVDALFQNIPCGVGSKRSDLKLKGKDERNVLLKGAEWAVSHGYGTKADLDHIEENGYLRG 183
Query: 530 ADPSKVSMRAKKRGLPQV 547
ADP +S RA KRG PQ+
Sbjct: 184 ADPDVISERAYKRGRPQL 201
>gi|448727839|ref|ZP_21710186.1| hypothetical protein C448_14188 [Halococcus morrhuae DSM 1307]
gi|445789397|gb|EMA40084.1| hypothetical protein C448_14188 [Halococcus morrhuae DSM 1307]
Length = 485
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 163/282 (57%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+ + Q+ V+IH GSRG GHQV T+ ++E+A
Sbjct: 205 SGNHFLEVQRVTDVFREGVADSYGLSE-DQIVVLIHCGSRGLGHQVCTEYTREVEQAHPE 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A + L MH F + F+ + +++
Sbjct: 264 LLEQLPDKELAAAPAGSQLAEEYYGAMCAAINYAWVNRQLIMHRTRKVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP +P Y+ GQPV+I G
Sbjct: 324 EMDLLYDVAHNIAKKEAHEVDGEERELYVHRKGATRAFPAGREEVPSAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SYVL G E M+ TFGST HGAGR +SR +++ +++ + L Q + ++ S
Sbjct: 384 SMGAGSYVLRGGESSMETTFGSTAHGAGRTMSRTQAKDEFWGEDIQDDLREQKVYVKAQS 443
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V EEAP YK+V +VV +GI + PV IKG
Sbjct: 444 GATVAEEAPGVYKDVDEVVRVSDELGIGDTVARTFPVCNIKG 485
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L +S+F +IP G+G G++ +EE L+ G++W+L EGY +D HCE+ GR
Sbjct: 120 HEEELVESLFANIPSGLGGGGVVESGVETVEEILDRGVEWALDEGYAVEDDLAHCEDEGR 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+ADP VS ++K RG Q+
Sbjct: 180 RPDADPDAVSQKSKDRGKNQI 200
>gi|257076499|ref|ZP_05570860.1| RtcB protein [Ferroplasma acidarmanus fer1]
Length = 475
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 164/282 (58%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+ ++ I D+ A K GI + + +M+H+GSRG GHQVATD L+++ +
Sbjct: 197 AGNHFLEMDRIESIMDEAKAKKFGINNKNNLAIMVHTGSRGLGHQVATDYLMRLNEEDSS 256
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
E +DRQL A I+S + + A F + + I AF K F + L
Sbjct: 257 IKSE-DDRQLISAYIHSRTGQDYLNAMNAAANFGFVNRQIITYKIRKAFEKIFGEDFEHL 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +Y ++HN+AK E H VDG ++ L+VHRKG+TRA P + + TG PV+I G
Sbjct: 316 GIETLYSLAHNMAKAEIHNVDGNKRKLMVHRKGATRALPAYAS--SGYFNETGHPVIIPG 373
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG SYV+ G + TF S+CHGAGR LSR ++ + ++V +L+S+GI +R +
Sbjct: 374 NMGGPSYVMVGMPGNEEITFSSSCHGAGRVLSRKRANEQFNAEDVEMELKSRGIYLRATT 433
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K ++EE+P SYKN+ +VV + I+ +L PVAV+KG
Sbjct: 434 KKAIIEESPGSYKNIDEVVRVINGAKIAAPVARLMPVAVMKG 475
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E ++ L + +P G+ K ++ D E L G++W+ GY ED E
Sbjct: 107 YDEARDKINILLDEINKTVPAGIDYKSSFRISIDDENEILSSGIEWAYNNGYATREDIER 166
Query: 521 CEEYGRMLNADPSKVSMRAKKRG 543
EE G+ML +D S VS +A KRG
Sbjct: 167 TEENGKML-SDISGVSEKAIKRG 188
>gi|313125940|ref|YP_004036210.1| hypothetical protein Hbor_11750 [Halogeometricum borinquense DSM
11551]
gi|448285780|ref|ZP_21477019.1| hypothetical protein C499_03368 [Halogeometricum borinquense DSM
11551]
gi|312292305|gb|ADQ66765.1| uncharacterized conserved protein [Halogeometricum borinquense DSM
11551]
gi|445575810|gb|ELY30273.1| hypothetical protein C499_03368 [Halogeometricum borinquense DSM
11551]
Length = 489
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 169/284 (59%), Gaps = 10/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A++ G+E+ Q+ V+IH GSRG GHQV TD L ++EK
Sbjct: 208 SGNHFLEVQRVTDVFREDVATEFGLEE-DQIVVLIHCGSRGLGHQVCTDYLRRIEKEHG- 265
Query: 196 DNIET-NDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
D +E+ D++LA A S+ + + A F L MH F + F ++
Sbjct: 266 DLLESLPDKELAAAPAGSDLAEEYYGAMCAAINFAWVNRQLIMHRTRRVFERVFGRDWEE 325
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
++M ++YDV+HNIAK E H V G+++ L VHRKG+TRAFP P +P Y+ GQP++I
Sbjct: 326 MEMDLLYDVAHNIAKKEVHDVGGEERELFVHRKGATRAFPAGRPELPSAYRDVGQPIIIP 385
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRV 367
G+MG SYVL G E + TFGST HGAGR +SR +++ + + V +L + Q I ++
Sbjct: 386 GSMGAGSYVLRGGEHSLDLTFGSTAHGAGRTMSRTQAKNDYWGETVQEELRDQQKIYVKA 445
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP YK+V +VV +GI K + PV IKG
Sbjct: 446 QSGATIAEEAPGVYKDVDEVVRVSDELGIGDKVVRTFPVCNIKG 489
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E K + E L +++F +IP G+G GI+ + +++ L G+DW+L G+
Sbjct: 111 MRTNLTYDELKGNEEELVEALFANIPSGLGGGGIVESDVDTVDQVLSRGVDWALEHGHAV 170
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D HCE+ G +ADP VS +AK RG Q+
Sbjct: 171 EADLAHCEDEGFRPDADPDAVSQKAKDRGKNQL 203
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +++F +IP G+G GI+ + +++ L G+DW+L G+ D H E
Sbjct: 125 EELVEALFANIPSGLGGGGIVESDVDTVDQVLSRGVDWALEHGHAVEADLAHCE 178
>gi|448346286|ref|ZP_21535172.1| hypothetical protein C485_10874 [Natrinema altunense JCM 12890]
gi|445632875|gb|ELY86081.1| hypothetical protein C485_10874 [Natrinema altunense JCM 12890]
Length = 488
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 163/285 (57%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDSDVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + +++
Sbjct: 264 LLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+M ++YDV+HNIAK E H V DG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 EMELLYDVAHNIAKKETHTVGADGEERELYVHRKGATRAFPAGHPEVPSAYRDVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V L + Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKDEFWGGDVQQDLADQQEIHVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 AQSGATIAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + H E L S+F ++P G+G GI+ ++E L G+DW+L G+
Sbjct: 108 MRTNLTYDEVRGHEEELVDSLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 168 EDDLLHCEDEGMREGADPDKVSQKAKDRGKNQI 200
>gi|435847160|ref|YP_007309410.1| hypothetical protein Natoc_1825 [Natronococcus occultus SP4]
gi|433673428|gb|AGB37620.1| hypothetical protein Natoc_1825 [Natronococcus occultus SP4]
Length = 486
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 162/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D + G+E+ ++ V+IH GSRG GHQ D L ++E+ K
Sbjct: 205 SGNHFLEVQRVTDVFDDEVGAAFGLEE-DRIVVLIHCGSRGLGHQTCNDYLRKIEQQHKG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
D++LA A S + + N + L MH F + F+ T +++
Sbjct: 264 LLDRLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVNRQLIMHRTRQVFERVFDRTWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H V +++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 324 EMELLYDVAHNIAKKETHTVGDEERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE-SQGISIRVA 368
+MG ++VL G E M TFGST HGAGR +SR +++ +V +LE Q I ++
Sbjct: 384 SMGAGNFVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEYWGGDVQQELEDQQQIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 486
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F +IP G+G GI+ + +EE L G+DW+L G+
Sbjct: 108 MRTNLTYDELQGREEELVDSLFANIPSGLGGGGIVEADIDTVEEILARGVDWALEHGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 168 EDDLLHCEDEGMREGADPDKVSQKAKDRGKNQI 200
>gi|322368825|ref|ZP_08043392.1| hypothetical protein ZOD2009_05047 [Haladaptatus paucihalophilus
DX253]
gi|320551556|gb|EFW93203.1| hypothetical protein ZOD2009_05047 [Haladaptatus paucihalophilus
DX253]
Length = 500
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 165/297 (55%), Gaps = 22/297 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+ + GQV V+IH GSRG GHQV TD L ++EK
Sbjct: 205 SGNHFLEVQRVTDVFREEVADAYGLSE-GQVVVLIHCGSRGLGHQVCTDYLRKIEKRHSG 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A S + + A F L MH + F F+ +
Sbjct: 264 LLSKLPDRELAAAPAGSRLAEEYYAAMGAAINFAWVNRQLVMHRTREVFEDVFDRPWRTM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV----------DGK-----QKTLLVHRKGSTRAFPPHHPLI 294
M ++YDV+HNIAK E H+V DG+ ++ L VHRKG+TRAFP HP +
Sbjct: 324 GMELLYDVAHNIAKKETHVVRVGPEGRPVGDGEAVEREERELFVHRKGATRAFPAGHPEV 383
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y GQPV+I G+MGT SYVL G E M+ FGST HGAGR +SR +++++ +V
Sbjct: 384 PGAYLDVGQPVIIPGSMGTGSYVLRGGEASMELGFGSTAHGAGRVMSRTQAKKDYWGGDV 443
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+LE + I ++ S V EEAP YK+V +VV A+GI + PV IKG
Sbjct: 444 REELEREHIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDTVARTFPVCNIKG 500
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L ++FD IP G+G G++ + E LE GM W+L EGY D HCE+ G
Sbjct: 120 HEEELVDALFDAIPSGLGGGGVVESGIDTVNEVLERGMAWALDEGYATDADLAHCEDEGV 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+DPS VS +AK RG Q+
Sbjct: 180 REESDPSAVSTKAKNRGKNQL 200
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L ++FD IP G+G G++ + E LE GM W+L EGY D H E
Sbjct: 122 EELVDALFDAIPSGLGGGGVVESGIDTVNEVLERGMAWALDEGYATDADLAHCE 175
>gi|448340549|ref|ZP_21529520.1| hypothetical protein C486_02768 [Natrinema gari JCM 14663]
gi|445629982|gb|ELY83252.1| hypothetical protein C486_02768 [Natrinema gari JCM 14663]
Length = 488
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 162/285 (56%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDADVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + N + L MH F + F+ + +++
Sbjct: 264 LLDQLPDKELAAAPAGSQLAADYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+M ++YDV+HNIAK E H V DG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 EMDLLYDVAHNIAKKETHTVGADGEERELYVHRKGATRAFPAGHPEVPSAYREVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V L + Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKDEFWGGDVKQDLADQQEIHVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 AQSGATIAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + + H E L +S+F ++P G+G GI+ ++E L G+DW+L GY
Sbjct: 108 MRTNLTYDDVRGHEEELVESLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGYAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
A+D HCE+ G A P KVS +AK RG Q+
Sbjct: 168 ADDLRHCEDEGMREGAAPDKVSQKAKDRGKNQI 200
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +S+F ++P G+G GI+ ++E L G+DW+L GY A+D H E
Sbjct: 122 EELVESLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGYAVADDLRHCE 175
>gi|397772864|ref|YP_006540410.1| hypothetical protein NJ7G_1087 [Natrinema sp. J7-2]
gi|397681957|gb|AFO56334.1| hypothetical protein NJ7G_1087 [Natrinema sp. J7-2]
Length = 488
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 162/285 (56%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDADVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + N + L MH F + F+ + +++
Sbjct: 264 LLDQLPDKELAAAPAGSQLAADYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+M ++YDV+HNIAK E H V DG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 EMDLLYDVAHNIAKKETHTVGADGEERELYVHRKGATRAFPAGHPEVPSAYRGVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V L + Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKDEFWGGDVKQDLADQQEIHVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 AQSGATIAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 488
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R ++ + + H E L +S+F ++P G+G GI+ ++E L G+DW+L GY
Sbjct: 108 MRTNLMYDDVRGHEEELVESLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGYAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
A+D HCE+ G A P KVS +AK RG Q+
Sbjct: 168 ADDLRHCEDEGMREGAAPDKVSQKAKDRGKNQI 200
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +S+F ++P G+G GI+ ++E L G+DW+L GY A+D H E
Sbjct: 122 EELVESLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGYAVADDLRHCE 175
>gi|448730418|ref|ZP_21712726.1| hypothetical protein C449_11548 [Halococcus saccharolyticus DSM
5350]
gi|445793586|gb|EMA44158.1| hypothetical protein C449_11548 [Halococcus saccharolyticus DSM
5350]
Length = 500
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 167/297 (56%), Gaps = 22/297 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+ + Q+ V+IH GSRG GHQV T+ ++E+A
Sbjct: 205 SGNHFLEVQRVTDVFREDVADAYGLTE-DQIVVLIHCGSRGLGHQVCTEYTREVEQAHPG 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + A + L MH + F + F+ + +D+
Sbjct: 264 LLDQLPDKELAAAPAGSQLADDYYGAMCAAINYAWVNRQLIMHRTREVFERVFDRSWEDM 323
Query: 250 DMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +
Sbjct: 324 EMDLLYDVAHNIAKKEVHEVGVGPEGRPAGDDAAVDGEERELYVHRKGATRAFPAGHPEV 383
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y+ GQPV+I G+MG SYVL G E ++ TFGST HGAGR +SR +++ ++V
Sbjct: 384 PSAYRDVGQPVIIPGSMGAGSYVLRGGEASLETTFGSTAHGAGRTMSRTQAKNEFWGEDV 443
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++LE Q + ++ S V EEAP YK+V +VV +GI + PV IKG
Sbjct: 444 QDELEEQKVYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDTVARTFPVCNIKG 500
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+A+ + H E L +S+F +IP G+G G++ +E LE GMDW+L EGY +D H
Sbjct: 114 YADIEGHEEELVESLFANIPSGLGGGGVVESGVDTVEAILERGMDWALEEGYAVEDDIAH 173
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
CE+ GR +ADP VS +AK RG Q+
Sbjct: 174 CEDEGRRPDADPGVVSQKAKDRGKNQI 200
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L +S+F +IP G+G G++ +E LE GMDW+L EGY +D H E
Sbjct: 122 EELVESLFANIPSGLGGGGVVESGVDTVEAILERGMDWALEEGYAVEDDIAHCE 175
>gi|448322486|ref|ZP_21511956.1| hypothetical protein C491_15987 [Natronococcus amylolyticus DSM
10524]
gi|445601244|gb|ELY55233.1| hypothetical protein C491_15987 [Natronococcus amylolyticus DSM
10524]
Length = 486
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 161/283 (56%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ K
Sbjct: 205 SGNHFLEVQRVTDVFDGDVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHKG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
D++LA A S + + N + L MH F + F+ + +++
Sbjct: 264 LLDRLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H VDG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I G
Sbjct: 324 EMELLYDVAHNIAKKELHTVDGEERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPG 383
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV-LNKLESQGISIRVA 368
+MG S+VL G E M TFGST HGAGR +SR +++ +V + Q I ++
Sbjct: 384 SMGAGSFVLRGGEHSMDLTFGSTAHGAGRLMSRTQAKNEYWGGDVQQELQDQQQIYVKAQ 443
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 SGATVAEEAPGVYKDVDEVVRVSDGLGIGDKVARTFPVCNIKG 486
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + E L S+F ++P G+G GI+ + ++E L G+DW+L G+
Sbjct: 108 MRTNLTYDELQGREEELVDSLFANVPSGLGGGGIVEADIDAVDEILARGVDWALEHGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 168 EDDLLHCEDEGMREGADPDKVSQKAKDRGKNQI 200
>gi|289746429|ref|ZP_06505807.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289686957|gb|EFD54445.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length = 396
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 155/254 (61%), Gaps = 11/254 (4%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVME 375
G +R S + + E
Sbjct: 383 GFIVRGTSRRGIAE 396
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
>gi|225181015|ref|ZP_03734462.1| protein of unknown function UPF0027 [Dethiobacter alkaliphilus AHT
1]
gi|225168212|gb|EEG77016.1| protein of unknown function UPF0027 [Dethiobacter alkaliphilus AHT
1]
Length = 473
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 169/281 (60%), Gaps = 18/281 (6%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ IV+ I D+ AA+ G+E G + V+IH+GSRGFGHQ+ TD M KA K
Sbjct: 201 GNHFLEMGIVEIIEDESAANTFGLEK-GMLTVLIHTGSRGFGHQICTDYTEIMFKAAKNY 259
Query: 197 NIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
I + LA +S + A A F L I +AF + T D
Sbjct: 260 GIHLPGKGLAACPTDSPEGSNYLAAMACAVNFAFANRQLITFDIREAFQEVLGET----D 315
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
+ V+YDV+HNIAK EEH + LLVHRKG+TRA PP H PV Y TG P ++ G+
Sbjct: 316 LAVVYDVAHNIAKFEEHF----GEKLLVHRKGATRALPPGHGENPVCYVATGHPAIVPGS 371
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
M + SYVLTGTE +E+F S HGAGR +SR+ +++++ ++ ++ + ++ R +
Sbjct: 372 MNSPSYVLTGTEAA-KESFCSVNHGAGRVMSRSAAKKHISREQFMSSVGDVLLNTR--NY 428
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K +++EAP +YKN+ DVVDT +G++K T +L+P+AVIKG
Sbjct: 429 KQLLDEAPPAYKNINDVVDTLADIGLTKITARLQPLAVIKG 469
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 464 DKEHFERLAQSMFDHIPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCE 522
DK L Q++ IP GVG K R+ LE+AL G + +GY D + CE
Sbjct: 112 DKPTLRALMQAIEKRIPAGVGGKSRHHRLCREGLEDALTHGARGLVSKGYGIRADLDRCE 171
Query: 523 EYGRMLNADPSKVSMRAKKR 542
E G + A + VS +A +R
Sbjct: 172 ESGCLSGAQTAAVSAKALQR 191
>gi|448711993|ref|ZP_21701536.1| hypothetical protein C446_05410 [Halobiforma nitratireducens JCM
10879]
gi|445791078|gb|EMA41727.1| hypothetical protein C446_05410 [Halobiforma nitratireducens JCM
10879]
Length = 503
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 166/298 (55%), Gaps = 23/298 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 207 SGNHFLEVQRVTDVFDDEVGDAYGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 265
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + K N + L MH F + F+ T +++
Sbjct: 266 LLDQLPDKELAAAPAGSQLAEDYYKAMNAAINFAWVNRQLIMHRTRQVFERVFDRTWEEM 325
Query: 250 DMHVIYDVSHNIAKTEEHMV----------DGK-----QKTLLVHRKGSTRAFPPHHPLI 294
+M ++YDV+HNIAK E H V DG+ ++ L VHRKG+TRAFP HP +
Sbjct: 326 EMELLYDVAHNIAKKETHEVGVGPEGRPVRDGEAVEREERELFVHRKGATRAFPAGHPEV 385
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y+ GQPV+I G+MG +YVL G E M TFGST HGAGR +SR +++ +V
Sbjct: 386 PDAYRDVGQPVIIPGSMGAGNYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEYWGGDV 445
Query: 355 LNKLESQG-ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+LE Q I ++ S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 446 QQELEEQDQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 503
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L S+F ++P G+G GI+ ++E LE G++W++ G+ ED HCE+ G
Sbjct: 124 EELVDSLFANVPSGLGGGGIVEAGVDTVDEILERGVEWAVENGHGVEEDLLHCEDEGIRT 183
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SK+S +AK RG Q+
Sbjct: 184 EADASKISQKAKDRGKNQI 202
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L S+F ++P G+G GI+ ++E LE G++W++ G+ ED H E
Sbjct: 124 EELVDSLFANVPSGLGGGGIVEAGVDTVDEILERGVEWAVENGHGVEEDLLHCE 177
>gi|345005046|ref|YP_004807899.1| hypothetical protein [halophilic archaeon DL31]
gi|344320672|gb|AEN05526.1| protein of unknown function UPF0027 [halophilic archaeon DL31]
Length = 485
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 162/283 (57%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +I+D+ + G+ + Q+ V+IH GSRG GHQ+ +D + ++E+
Sbjct: 204 SGNHFLEVQRVTDIFDEETGAAFGLAE-DQIVVLIHCGSRGLGHQICSDYVRRIEQEHGD 262
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
D+ LA A S + + A F L H + F+ F+ ++L
Sbjct: 263 LLDSLPDKDLAAAPAGSELAEEYYGAMCAAVNFAWVNRQLITHRTREVFSDVFDAPVEEL 322
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YDV+HNIAK E H VDG+ + L VHRKG+TRAFP +P Y+ GQPV+I G
Sbjct: 323 GLELLYDVAHNIAKRETHDVDGEDRELFVHRKGATRAFPAGREEVPAAYRDVGQPVIIPG 382
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIRVA 368
+MG SYVL G + +QETFGST HGAGR +SR ++++ +V + L E + I ++
Sbjct: 383 SMGAGSYVLKGGSRSLQETFGSTAHGAGRLMSRTQAKQEFWGDDVQDDLREQEHIYVKAN 442
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV A+ I K + PV IKG
Sbjct: 443 SGATVAEEAPGVYKDVDEVVRVSDALDIGDKVARTFPVCNIKG 485
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + + + H E L +FD +P G+G G++ +E LE G++W++ EGY
Sbjct: 107 LRTTLSYDDVRGHEEELVNVLFDAVPSGLGGGGVVNGTRDAVEAVLEHGVEWAVEEGYAT 166
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G +A P VS +AK RG+ Q+
Sbjct: 167 EDDLAHCEDEGCRPDARPEFVSKKAKDRGMNQL 199
>gi|448337147|ref|ZP_21526229.1| hypothetical protein C487_05614 [Natrinema pallidum DSM 3751]
gi|445626493|gb|ELY79836.1| hypothetical protein C487_05614 [Natrinema pallidum DSM 3751]
Length = 488
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 163/285 (57%), Gaps = 10/285 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ ++ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDADVGEAYGLEE-DRIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + +++
Sbjct: 264 LLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWEEM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+M ++YDV+HNIAK E H V DG+++ L VHRKG+TRAFP HP +P Y+ GQPV+I
Sbjct: 324 EMELLYDVAHNIAKKETHTVGADGEERELYVHRKGATRAFPAGHPEVPSAYRDVGQPVII 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL-ESQGISIR 366
G+MG SYVL G E M TFGST HGAGR +SR +++ +V L + Q I ++
Sbjct: 384 PGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKDEFWGGDVQQDLADQQEIHVK 443
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + EEAP YK+V +VV +GI + + PV IKG
Sbjct: 444 AQSGATIAEEAPGVYKDVDEVVRVSDELGIGDRVARTFPVCNIKG 488
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E + H E L S+F ++P G+G GI+ ++E L G+DW+L G+
Sbjct: 108 MRTNLTYDEVRGHEEELVDSLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAV 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G A+P KVS +AK RG Q+
Sbjct: 168 EDDLLHCEDEGMREGAEPEKVSQKAKDRGKNQI 200
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L S+F ++P G+G GI+ ++E L G+DW+L G+ +D H E
Sbjct: 122 EELVDSLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAVEDDLLHCE 175
>gi|188584797|ref|YP_001916342.1| hypothetical protein Nther_0155 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349484|gb|ACB83754.1| protein of unknown function UPF0027 [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 462
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 216/388 (55%), Gaps = 48/388 (12%)
Query: 34 LPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRS-PLTLGAGNHY 92
LP + + + PG+ G+ T++L ++ N+ ++ P + G +
Sbjct: 113 LPKLLEKITSSVSPGVGGK------------TKYLKAKSLDIQNVLEQGVPYLIRQG--F 158
Query: 93 AEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIY 150
++ +D I D S+ G V+ H + Q+AT +GNH+ EI +++ +
Sbjct: 159 GNMEDLDHIEDGGVISE------GDSSVLSHEAVKRAKEQLATLGSGNHFIEICLLETDF 212
Query: 151 DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARI 210
++ A+ +GI + G+VC +IH+GSRG GHQV T+ + +M+KA+K+D + LA A I
Sbjct: 213 NQKEANDLGI-NYGKVCFLIHTGSRGIGHQVCTEYMDRMKKALKKDRQPLPTKGLAYAEI 271
Query: 211 NSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDD----LDMHVIYDVSHNIAKTEE 266
S + + + +Q TT + ++IYDV HNIAK E
Sbjct: 272 KSPLGREYFSAMAAA-------SNFAFANRQLLTTAIEEAIGCKTNLIYDVPHNIAKFE- 323
Query: 267 HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQ 326
+D ++ LLVHRKG+TRAFP H + ++ TGQPV+I GTMGT SY++ GTE ++
Sbjct: 324 -TIDNQK--LLVHRKGATRAFPAGHSALAKKFKNTGQPVIIPGTMGTGSYIMLGTEN-LR 379
Query: 327 ETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGISIRVASPKLVMEEAPESYKN 383
TF S HGAGR LSR ++++++ +++++N GI + + K V++EAP++YK+
Sbjct: 380 RTFYSVNHGAGRQLSRKQAKKSITKKQFKQMMN-----GIEMSIPGVKNVIDEAPQAYKD 434
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V +VV+T +G++KK +LRP+ VIKG
Sbjct: 435 VDEVVNTLCDIGLTKKIARLRPIGVIKG 462
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 426 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYI-----WAEDKEHFERLAQSMFDHI 479
+P+G G++ + D + A +GMD + I + + K+ +L + + +
Sbjct: 69 LPIG----GVLATDGNDGIISAGAVGMDINCGVRLINTDIDYGDIKDELPKLLEKITSSV 124
Query: 480 PVGVGSKG-IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 538
GVG K + + D++ LE G+ + +R+G+ ED +H E+ G + D S +S
Sbjct: 125 SPGVGGKTKYLKAKSLDIQNVLEQGVPYLIRQGFGNMEDLDHIEDGGVISEGDSSVLSHE 184
Query: 539 AKKRGLPQVS 548
A KR Q++
Sbjct: 185 AVKRAKEQLA 194
>gi|339256436|ref|XP_003370407.1| replication factor C subunit [Trichinella spiralis]
gi|316964986|gb|EFV49852.1| replication factor C subunit [Trichinella spiralis]
Length = 112
Score = 196 bits (497), Expect = 4e-47, Method: Composition-based stats.
Identities = 90/112 (80%), Positives = 100/112 (89%)
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
TGQPVLIGGTMGTCSY+LTGT KGM ETFG+TCHGAGRA+SRAKSRR LDY VL+ L
Sbjct: 1 FTGQPVLIGGTMGTCSYILTGTVKGMSETFGTTCHGAGRAMSRAKSRRTLDYTNVLDALA 60
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++GISIRVASPKL+MEEAPESYKNVTDVV+TCH GISK+ KLRP+AVIKG
Sbjct: 61 AKGISIRVASPKLIMEEAPESYKNVTDVVNTCHEAGISKRCVKLRPIAVIKG 112
>gi|407013224|gb|EKE27395.1| hypothetical protein ACD_3C00213G0004 [uncultured bacterium (gcode
4)]
Length = 479
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 171/297 (57%), Gaps = 14/297 (4%)
Query: 123 HSGSRGFGHQVAT-AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181
H+ R + +GNH+ E+Q V++I+D A+ I + QV +M+H+ SR GHQV
Sbjct: 188 HAKLRWLDQEWTLGSGNHFLEVQKVEKIFDDRIANIFWIRE-NQVVIMVHTWSRWLGHQV 246
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
ATD + M ++ + IE DR+LAC +S + + + A F + ++I
Sbjct: 247 ATDYVRIMLQSQSKYWIELVDRELACLPFSSPEWQDYFAAMSGAANFAWANRQMITYLIR 306
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD-GKQKTLLVHRKGSTRAFPPHHPLI 294
++ + ++ ++YDV+HNI K E H + G LLVHRK +TR+FPPHH I
Sbjct: 307 QSWERVIGK----WELRLLYDVAHNICKIETHQDEKGHNIELLVHRKWATRSFPPHHVNI 362
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y + QPVLI +M T S++L+ E ++F S CH A R+ SR ++ R ++++
Sbjct: 363 PARYMTSWQPVLIPWSMWTSSFILSWWENS-SDSFYSACHWAWRSKSRHQAIREYSWRQI 421
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++L ++ I + +S + + EEAP +YK++ DV++ ++KK +L+P+AVIKG
Sbjct: 422 IDELRARWIVVECSSMRWIAEEAPWAYKDIEDVIEIVDWAWLAKKVAQLKPIAVIKG 478
>gi|354610704|ref|ZP_09028660.1| protein of unknown function UPF0027 [Halobacterium sp. DL1]
gi|353195524|gb|EHB61026.1| protein of unknown function UPF0027 [Halobacterium sp. DL1]
Length = 499
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 162/296 (54%), Gaps = 21/296 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++YD A G+E QV V+IH GSRG GHQ+ +D L ++E
Sbjct: 205 SGNHFLEVQRVTDVYDNDTADAFGLE-ADQVVVLIHCGSRGLGHQICSDYLRRIEDEHPE 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
++ LA A S + A F L H + + FA F+ + + L
Sbjct: 264 FLASLPEKDLAAAPAGSELADDYYGAMCAAINFAWVNRQLITHAVRETFADVFDQSWEAL 323
Query: 250 DMHVIYDVSHNIAKTEEHMV-----------DGK--QKTLLVHRKGSTRAFPPHHPLIPV 296
+M ++YDV+HNIAK E H V DG+ ++ L VHRKG+TRAFP HP +P
Sbjct: 324 EMDLLYDVAHNIAKRETHDVYEVEDGYSLEGDGERVERDLYVHRKGATRAFPAGHPDVPT 383
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
Y+ GQPV+I G+MG SYVL G + ++ +FGST HGAGR +SR +++R V
Sbjct: 384 AYREVGQPVIIPGSMGAGSYVLKGGAESLRRSFGSTAHGAGRLMSRTQAKREYGGGAVQT 443
Query: 357 KLESQG-ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L Q I ++ AS + + EEAP YK+V +VV A+GI + PV +KG
Sbjct: 444 SLREQNQIYVKAASGETIAEEAPGVYKDVDEVVGVSDALGIGDLVVRTFPVCNVKG 499
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++FD +P G+G G+ DLE ALE G+DW + EGY ED+ HCE+ G
Sbjct: 122 EELVDALFDAVPCGLGGGGVHDGTHGDLEAALERGVDWCVEEGYATREDRLHCEDEGMRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+AD S VS +AK RG Q+
Sbjct: 182 DADLSAVSKKAKDRGASQM 200
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
E L ++FD +P G+G G+ DLE ALE G+DW + EGY ED+ H E
Sbjct: 122 EELVDALFDAVPCGLGGGGVHDGTHGDLEAALERGVDWCVEEGYATREDRLHCE 175
>gi|337293317|emb|CCB91307.1| UPF0027 protein TK0358 [Waddlia chondrophila 2032/99]
Length = 475
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 218/443 (49%), Gaps = 77/443 (17%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH---SVP-----------------------------S 64
++Q+ NVA LPGI+G S+ +PD+H P +
Sbjct: 42 LQQVRNVAHLPGIIGYSIAMPDIHWGYGFPIGGVAAMDLEEGVISPGGVGYDINCGVRLA 101
Query: 65 TQWLSDNTMRSSN-------IWKRSPLTLGAGNHYAEIQIVDEIYDKWA--ASKMGIED- 114
L T+++ I+KR P +G G + ++ + Y + S+ +E
Sbjct: 102 VVPLPFQTLKAKEKDALLQAIFKRVPSGVGRGTKQGK-ELTESDYKQIVEKGSRWSVEQG 160
Query: 115 VGQVCVMIHSGSRGF-----------------GHQVAT--AGNHYAEIQIVDEIYDKWAA 155
G + H+ SRGF HQ+ + +GNH+ EI V +Y + A
Sbjct: 161 FGLPQDLEHTESRGFIEGGEIDAVSPLAKERGRHQLGSVGSGNHFVEIGEVSHLYLEEIA 220
Query: 156 SKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN 215
GI G ++IHSGSRGFGHQ+ D L K + + D+QL A I S
Sbjct: 221 QTWGIVK-GMTYILIHSGSRGFGHQICQDTLNTFVKKNLDEGLP--DKQLIAAPIRSALG 277
Query: 216 KAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 269
K + A F +H + +F + T+ + + + IYDV HNIAK E++ +
Sbjct: 278 KQYFQAMASAANFAFNNRQRILHQVRQSFLEVLGTSAESIRL--IYDVCHNIAKFEQYTI 335
Query: 270 DGKQKTLLVHRKGSTRAF-PPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQET 328
DGK KT+ VHRKG+TRAF P L PV +Q TGQPVL+ G MG S+++ G +G T
Sbjct: 336 DGKLKTVCVHRKGATRAFGPGAEELAPV-FQTTGQPVLVPGDMGRASHLMAG--QGNPLT 392
Query: 329 FGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVV 388
+ S+CHGAGRA SR KS + ++ + +E+QG+ + S + + EE P++YK+V VV
Sbjct: 393 WCSSCHGAGRARSRIKSLQAWKGRDPVEYMENQGVKVAARSYRTIAEEMPDAYKDVDAVV 452
Query: 389 DTCHAVGISKKTFKLRPVAVIKG 411
+ G+++ KLRP V+KG
Sbjct: 453 EAVQEAGLARMVAKLRPQLVLKG 475
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 471 LAQSMFDHIPVGVG--SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
L Q++F +P GVG +K + D ++ +E G WS+ +G+ +D EH E G +
Sbjct: 118 LLQAIFKRVPSGVGRGTKQGKELTESDYKQIVEKGSRWSVEQGFGLPQDLEHTESRGFIE 177
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ VS AK+RG Q+
Sbjct: 178 GGEIDAVSPLAKERGRHQL 196
>gi|302341702|ref|YP_003806231.1| hypothetical protein Deba_0260 [Desulfarculus baarsii DSM 2075]
gi|301638315|gb|ADK83637.1| protein of unknown function UPF0027 [Desulfarculus baarsii DSM
2075]
Length = 480
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 166/300 (55%), Gaps = 12/300 (4%)
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V H+ +RG Q+ T AGNH+ E+ +V+ + D AA G+ GQ+ + IHSGSRG
Sbjct: 185 VSTHARNRGR-DQLGTLGAGNHFVELGVVELVADADAAQAFGLFP-GQLVLWIHSGSRGL 242
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDM 231
GHQV D L ++ + +D + + D QL A +S +++ + F +
Sbjct: 243 GHQVCDDYLKRLRQ--DKDAVHSPDSQLIAASPHSPVGQSYLAAMAASANFAFANRQMLT 300
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
H+ A + +P +L + ++YDV+HNIAK E H V +Q+ L VHRKG+TRA P+H
Sbjct: 301 HLARQAIGQTLQISPANLGLALVYDVAHNIAKLETHTVHNRQRQLWVHRKGATRALGPNH 360
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
P +P Y GQPVL G MG SYVL G+ TF S+ HGAGR LSRAK++ N
Sbjct: 361 PELPPRYAAIGQPVLTPGDMGRASYVLKGSHLAETLTFASSAHGAGRRLSRAKAKHNAKG 420
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++ +L + +R + + EE P++YKNV ++ G++ K RP+ IKG
Sbjct: 421 RDISAELAQTNVIVRAKARATLAEEMPDAYKNVNNIAAIMQNSGVAPIVAKTRPLVCIKG 480
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 455 LREGYIWAE-DKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513
LR + A+ + + RLA ++ IP GVG G ++ R L+ L G W++ G+
Sbjct: 104 LRSKLVAADLNHQQLTRLADALAAQIPAGVGQGGAKRLDDRQLDRVLTQGAAWAVNNGHG 163
Query: 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
A D E CE G++ ADP +VS A+ RG Q+
Sbjct: 164 QATDLEFCESNGQIPLADPDQVSTHARNRGRDQL 197
>gi|297620800|ref|YP_003708937.1| hypothetical protein wcw_0561 [Waddlia chondrophila WSU 86-1044]
gi|297376101|gb|ADI37931.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 475
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 218/443 (49%), Gaps = 77/443 (17%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH---SVP-----------------------------S 64
++Q+ NVA LPGI+G S+ +PD+H P +
Sbjct: 42 LQQVRNVAHLPGIIGYSIAMPDIHWGYGFPIGGVAAMDLEEGVISPGGVGYDINCGVRLA 101
Query: 65 TQWLSDNTMRSSN-------IWKRSPLTLGAGNHYAEIQIVDEIYDKWA--ASKMGIED- 114
L T+++ I+KR P +G G + ++ + Y + S+ +E
Sbjct: 102 VVPLPFQTLKAKEKDALLQAIFKRVPSGVGRGTKQGK-ELTESDYKQIVEKGSRWSVEQG 160
Query: 115 VGQVCVMIHSGSRGF-----------------GHQVAT--AGNHYAEIQIVDEIYDKWAA 155
G + H+ SRGF HQ+ + +GNH+ EI V +Y + A
Sbjct: 161 FGLPQDLEHTESRGFIEGGEIDAVSPLAKERGRHQLGSVGSGNHFVEIGEVSHLYLEEIA 220
Query: 156 SKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN 215
GI G ++IHSGSRGFGHQ+ D L K + + D+QL A I S
Sbjct: 221 QTWGIVK-GMTYILIHSGSRGFGHQICQDTLNTFVKKNLDEGLP--DKQLIAAPIRSALG 277
Query: 216 KAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 269
K + A F +H + +F + T+ + + + IYDV HNIAK E++ +
Sbjct: 278 KQYFQAMASAANFAFNNRQRILHQVRQSFLEVLGTSAESIRL--IYDVCHNIAKFEQYTI 335
Query: 270 DGKQKTLLVHRKGSTRAF-PPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQET 328
DGK KT+ VHRKG+TRAF P L PV +Q TGQPVL+ G MG S+++ G +G T
Sbjct: 336 DGKLKTVCVHRKGATRAFGPGAEELAPV-FQTTGQPVLVPGDMGRASHLMAG--QGNPLT 392
Query: 329 FGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVV 388
+ S+CHGAGRA SR KS + ++ + +E+QG+ + S + + EE P++YK+V VV
Sbjct: 393 WCSSCHGAGRARSRIKSLQAWKGRDPVEYMENQGVKVAARSYRTIAEEMPDAYKDVDAVV 452
Query: 389 DTCHAVGISKKTFKLRPVAVIKG 411
+ G+++ KLRP V+KG
Sbjct: 453 EAVQEAGLARMVAKLRPQLVLKG 475
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 471 LAQSMFDHIPVGVG--SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
L Q++F +P GVG +K + D ++ +E G WS+ +G+ +D EH E G +
Sbjct: 118 LLQAIFKRVPSGVGRGTKQGKELTESDYKQIVEKGSRWSVEQGFGLPQDLEHTESRGFIE 177
Query: 529 NADPSKVSMRAKKRGLPQV 547
+ VS AK+RG Q+
Sbjct: 178 GGEIDAVSPLAKERGRHQL 196
>gi|433638733|ref|YP_007284493.1| hypothetical protein Halru_1761 [Halovivax ruber XH-70]
gi|433290537|gb|AGB16360.1| hypothetical protein Halru_1761 [Halovivax ruber XH-70]
Length = 503
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 162/300 (54%), Gaps = 25/300 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D + G+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDDEVGAAFGLT-ADQIVVLIHCGSRGLGHQTCNDYLRKIEQHHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH + F + F+ + D+
Sbjct: 264 LLDQLPDKELAAAPAGSQLAEEYYAAMNAAINFAWVNRQLIMHRTREVFERVFDRSWQDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV-----------------DGKQKTLLVHRKGSTRAFPPHHP 292
+M ++YDV+HNIAK E H V D ++ L VHRKG+TRAFP HP
Sbjct: 324 EMELLYDVAHNIAKKETHTVGAASHSADAASGAEPRADETERELYVHRKGATRAFPAGHP 383
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
+P Y+ GQPV+I G+MG SYVL G E M TFGST HGAGR +SR +++
Sbjct: 384 EVPAAYRDVGQPVIIPGSMGAGSYVLRGGEASMDLTFGSTAHGAGRLMSRTQAKDEYWGG 443
Query: 353 EVLNKLES-QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V +LES I ++ S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 444 DVQEELESDHQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 503
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H L S+F ++P G+G GI+ ++E L G+DW+L GY +D HCE+ G
Sbjct: 120 HERELVDSLFANVPSGLGGGGIVEAGIDTIDEILARGVDWALEHGYAVEDDLRHCEDEGV 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
ADP+ VS +AK RG Q+
Sbjct: 180 REEADPAMVSQKAKDRGKNQI 200
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L S+F ++P G+G GI+ ++E L G+DW+L GY +D H E
Sbjct: 124 LVDSLFANVPSGLGGGGIVEAGIDTIDEILARGVDWALEHGYAVEDDLRHCE 175
>gi|15790456|ref|NP_280280.1| hypothetical protein VNG1454C [Halobacterium sp. NRC-1]
gi|169236192|ref|YP_001689392.1| rtcB-like protein [Halobacterium salinarum R1]
gi|10580950|gb|AAG19760.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727258|emb|CAP14044.1| 3'-5' RNA ligase [Halobacterium salinarum R1]
Length = 500
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 164/298 (55%), Gaps = 24/298 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V ++YD A+ G+ + QV V+IH GSRG GHQ+ +D L ++E+
Sbjct: 205 SGNHFLEVQRVTDVYDDDTAAAFGLAE-DQVVVLIHCGSRGLGHQICSDYLRRIEQEHPD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-- 247
++ LA A S ++ A F L H + + FA F+ PD
Sbjct: 264 FLASLPNKDLAAAPAGSELAASYYGAMCAAINFAWVNRQLITHAVRETFADVFDA-PDWE 322
Query: 248 DLDMHVIYDVSHNIAKTEEHMV-----------DGK--QKTLLVHRKGSTRAFPPHHPLI 294
L M ++YDVSHNIAK E H V DG+ ++ L VHRKG+TRAFP HP +
Sbjct: 323 ALGMDLLYDVSHNIAKRETHAVVETEDGYSLAGDGERVERELFVHRKGATRAFPAGHPEV 382
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y+ GQPV+I G+MG SYVL G + + TFGST HGAGR +SR +++ +V
Sbjct: 383 PAAYREVGQPVIIPGSMGAGSYVLRGGSQSLGRTFGSTAHGAGRLMSRTQAKDEYQGGDV 442
Query: 355 LNKLES-QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ LE+ I ++ AS + EEAP YK++ DVVD +G+ + PV +KG
Sbjct: 443 QDALEADDDIHVKAASGATIAEEAPGVYKDIDDVVDVSAGLGVGDPVVRTYPVCNVKG 500
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L +++D +P G+G G+ DL+ ALE G+DW + EGY D+ HCE+ G+ L+A
Sbjct: 124 LVDALYDAVPCGLGGGGVHDGTHADLDAALERGIDWCVEEGYAVPADRRHCEDEGQRLDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
D VS +A+ RG Q+
Sbjct: 184 DLDAVSKKARDRGASQM 200
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
L +++D +P G+G G+ DL+ ALE G+DW + EGY D+ H E Q +
Sbjct: 124 LVDALYDAVPCGLGGGGVHDGTHADLDAALERGIDWCVEEGYAVPADRRHCEDEGQRL 181
>gi|448358941|ref|ZP_21547614.1| hypothetical protein C482_13475 [Natrialba chahannaoensis JCM
10990]
gi|445644319|gb|ELY97334.1| hypothetical protein C482_13475 [Natrialba chahannaoensis JCM
10990]
Length = 533
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 164/298 (55%), Gaps = 23/298 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +I+D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 237 SGNHFLEVQRVTDIFDTEVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 295
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 296 LLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRQVFERVFDRSWESM 355
Query: 250 DMHVIYDVSHNIAKTEEHMV----------DGK-----QKTLLVHRKGSTRAFPPHHPLI 294
+M ++YDV+HNIAK E H V DG+ ++ L VHRKG+TRAFP HP +
Sbjct: 356 EMELLYDVAHNIAKKETHTVGVGPEGRPVRDGEAVEREERELYVHRKGATRAFPAGHPEV 415
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y+ GQPV+I G+MG +YVL G E M TFGST HGAGR +SR +++ +V
Sbjct: 416 PKAYRDVGQPVIIPGSMGAGNYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKNEFWGGDV 475
Query: 355 LNKLESQ-GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++LE Q I ++ S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 476 QDELEEQEQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 533
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + E K E L ++F +IP G+G G++ ++E L G+DW+L G+
Sbjct: 140 MRTNLTYDELKGQEEELVDALFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAV 199
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
+D HCE+ G ADP KVS +AK RG Q+
Sbjct: 200 EDDLLHCEDEGMREGADPEKVSQKAKDRGKNQI 232
>gi|448613594|ref|ZP_21663474.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
gi|445740491|gb|ELZ91997.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
Length = 478
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 153/278 (55%), Gaps = 3/278 (1%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AG H+ E+Q V ++YD A+ G+ V VMIHSGSRG GHQ + E+ +
Sbjct: 202 AGTHFVEVQRVTDVYDDETAAAFGL-GTDDVVVMIHSGSRGVGHQTCAHYIRAFEREYQS 260
Query: 196 DNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
+ D QL A + + F A + I +A + F+ + V
Sbjct: 261 LSASLPDEQLVYAPLGDDLADEFRGAMNAAANFAWANRQAITEAVREVFDVLFGATGLEV 320
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDV HNIAK E H V+G+ +TLLVHRKG+TRAFP P +P Y+ GQPV + G+MG+
Sbjct: 321 VYDVCHNIAKEERHAVNGEMQTLLVHRKGATRAFPAGRPEVPEAYRAVGQPVFMPGSMGS 380
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYVL G + ++ +FGS HGAGR SR ++ E+ L ++GI +R S + +
Sbjct: 381 HSYVLAGGPESLERSFGSAAHGAGRRKSRTEAASEYSAGELKKALRARGIFVRARSAEAL 440
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK++ +VV A+GI K + P+A +KG
Sbjct: 441 TEEAPGAYKDIDEVVRVSDALGIGTKVARTVPLANVKG 478
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G + + LA + IP G + G + + D+ LE G++W G+
Sbjct: 106 LRTGLSYKDVVSEQSILADRLNQTIPTGPVAGGYVDADISDVRGILEDGLEWMHSNGHAT 165
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D +HCEE+GR L +DP+ V A KRG+ QV
Sbjct: 166 RADLDHCEEHGR-LPSDPNAVPTEALKRGVSQV 197
>gi|448622930|ref|ZP_21669579.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
denitrificans ATCC 35960]
gi|445753438|gb|EMA04855.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
denitrificans ATCC 35960]
Length = 501
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 164/298 (55%), Gaps = 23/298 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +IY A G+E Q+ V+IH GSRG GHQ TD L ++EK K
Sbjct: 205 SGNHFLEVQRVTDIYRDDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHKD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV----------DG-----KQKTLLVHRKGSTRAFPPHHPLI 294
+M ++YDV+HNIAK E H V DG +++ L VHRKG+TRAFP P +
Sbjct: 324 EMRLLYDVAHNIAKKEVHEVGVDPEGRPVRDGDAVEREERELYVHRKGATRAFPAGRPEL 383
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y GQPV+I G+MG SYVL G ++ + TFGST HGAGR +SR K+++ + V
Sbjct: 384 PPAYADVGQPVIIPGSMGAGSYVLRGGDQSLDLTFGSTAHGAGRLMSRTKAKQEYWGETV 443
Query: 355 LNKL-ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++L E + I ++ S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 QDELREQEKIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 501
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L ++F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G
Sbjct: 120 HEEELVDALFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGF 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+A P VS +AK RG Q+
Sbjct: 180 RDDARPEFVSQKAKDRGRNQI 200
>gi|20807196|ref|NP_622367.1| hypothetical protein TTE0709 [Thermoanaerobacter tengcongensis MB4]
gi|20515698|gb|AAM23971.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 480
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 165/281 (58%), Gaps = 15/281 (5%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ V+EI ++ A K G+ GQ+ VMIH+GSRGFGHQ+ATD + +A KR
Sbjct: 207 GNHFIEIQKVEEILEENLAEKFGLFK-GQLAVMIHTGSRGFGHQIATDYTKILWEAAKRY 265
Query: 197 NIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
IE ++ LA A I S + + + K F + + M + AF + +++
Sbjct: 266 GIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFSNRQIIMFDVIRAFEDVLKKSEEEMG 325
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK E H K +LVHRKG+TRA P HP P Y+ TG P LI G+
Sbjct: 326 FKLVYDVAHNIAKWEVH----GGKRMLVHRKGATRALPAGHPQNPPSYRDTGHPALIPGS 381
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYV+ GTEK ETF S HGAGR LSR ++++ + +E + ++R S
Sbjct: 382 MGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNQAKK-ISKEEFERSMGDVVYNVR--SY 437
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K +++E+P +YK+V VV GI+ KL P+AV+KG
Sbjct: 438 KDIVDESPLAYKDVETVVSVFEERGITIPVAKLIPLAVVKG 478
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ V +VND L++L+ ++ ++Q+ N A+LPG+V +G+PD+H
Sbjct: 27 MRVDAVVYVNDSLKELLRDD--------------QSLRQLVNAASLPGVVEPVIGMPDIH 72
>gi|429963038|gb|ELA42582.1| hypothetical protein VICG_00334 [Vittaforma corneae ATCC 50505]
Length = 526
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 189/329 (57%), Gaps = 12/329 (3%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG+GNHY EI++VD+I D+ A K+GIE+ GQ+ + IH+GSRG GH + +
Sbjct: 208 TLGSGNHYLEIEVVDQICDEAIAKKLGIEE-GQIVISIHTGSRGLGHGCCSDILEEMKQS 266
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D +K + + + + + ++ + ++AM + IET
Sbjct: 267 NIDTTQLIKDRTKEEFKKISENDSLSKEEKKVEYEKITQKFRQEKKEAMTKKEIET---- 322
Query: 205 LACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIA 262
L S + + K N+ + + VI + K F+ ++++ +IYDV HN+A
Sbjct: 323 LEFVPFRSEIGQKYLKTMNSASNFAWANRSVITEKVRKVFSQVFPEVEIKLIYDVCHNVA 382
Query: 263 KTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE 322
K E+ +DG++ L+ RKG++R PP H +P +Y+ GQPVL+GG+MGTCSY++ G +
Sbjct: 383 KIEK--IDGRE--YLILRKGASRILPPGHLDLPEEYKDIGQPVLVGGSMGTCSYLIVG-D 437
Query: 323 KGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYK 382
K + T+ STCHGAGR +SR+KS++ +EV+ ++S+ + +V S + ++EE YK
Sbjct: 438 KNAKLTYYSTCHGAGRLVSRSKSKQKFSVEEVIEDMKSKDVVFKVGSIEGMVEECANCYK 497
Query: 383 NVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V VV+ +G+SK +++P+ V+KG
Sbjct: 498 DVEVVVNHSQKIGVSKNVCRVKPILVLKG 526
>gi|448378217|ref|ZP_21560691.1| hypothetical protein C479_15647 [Halovivax asiaticus JCM 14624]
gi|445654199|gb|ELZ07053.1| hypothetical protein C479_15647 [Halovivax asiaticus JCM 14624]
Length = 503
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 163/300 (54%), Gaps = 25/300 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D + G+ + Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDDEVGAAFGLTE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQHHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH + F + F+ + D+
Sbjct: 264 LLNQLPDKELAAAPAGSQLAEEYYAAMNAAINFAWVNRQLIMHRSREVFERVFDRSWQDM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV-----------------DGKQKTLLVHRKGSTRAFPPHHP 292
+M ++YDV+HNIAK E H + D ++ L VHRKG+TRAFP HP
Sbjct: 324 EMELLYDVAHNIAKKETHTIGAAAHSADVASGADPRADETERELYVHRKGATRAFPAGHP 383
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
+P Y+ GQPV+I G+MG SYVL G E M TFGST HGAGR +SR +++
Sbjct: 384 EVPAAYRDVGQPVIIPGSMGAGSYVLRGGEASMDLTFGSTAHGAGRLMSRTQAKDEYWGG 443
Query: 353 EVLNKLES-QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V +LE+ I ++ S V EEAP YK+V +VV A+GI K + PV IKG
Sbjct: 444 DVQEELEADHQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPVCNIKG 503
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H L S+F ++P G+G GI+ ++E L G+DW+L Y +D HCE+ G
Sbjct: 120 HERELVDSLFANVPSGLGGGGIVEAGIDTIDEILARGVDWALEHDYAVEDDLRHCEDEGV 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
ADP+ VS +AK RG Q+
Sbjct: 180 REEADPAAVSQKAKDRGKNQI 200
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L S+F ++P G+G GI+ ++E L G+DW+L Y +D H E
Sbjct: 124 LVDSLFANVPSGLGGGGIVEAGIDTIDEILARGVDWALEHDYAVEDDLRHCE 175
>gi|254478891|ref|ZP_05092254.1| Uncharacterized protein family UPF0027 [Carboxydibrachium pacificum
DSM 12653]
gi|214035157|gb|EEB75868.1| Uncharacterized protein family UPF0027 [Carboxydibrachium pacificum
DSM 12653]
Length = 413
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 165/281 (58%), Gaps = 15/281 (5%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ V+EI ++ A K G+ GQ+ VMIH+GSRGFGHQ+ATD + +A K+
Sbjct: 140 GNHFIEIQKVEEILEENLAEKFGLFK-GQLAVMIHTGSRGFGHQIATDYTKILWEAAKKY 198
Query: 197 NIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
IE ++ LA A I S + + + K F + + M + AF + +++
Sbjct: 199 GIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFSNRQIIMFDVIRAFEDVLKKSEEEMG 258
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK E H K +LVHRKG+TRA P HP P Y+ TG P LI G+
Sbjct: 259 FKLVYDVAHNIAKWEVH----GGKRMLVHRKGATRALPAGHPQNPPSYRDTGHPALIPGS 314
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYV+ GTEK ETF S HGAGR LSR ++++ + +E + ++R S
Sbjct: 315 MGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNQAKK-ISKEEFERSMGDVVYNVR--SY 370
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K +++E+P +YK+V VV GI+ KL P+AV+KG
Sbjct: 371 KDIVDESPLAYKDVEAVVSVLEERGITIPVAKLIPLAVVKG 411
>gi|339500817|ref|YP_004698852.1| hypothetical protein Spica_2226 [Spirochaeta caldaria DSM 7334]
gi|338835166|gb|AEJ20344.1| protein of unknown function UPF0027 [Spirochaeta caldaria DSM 7334]
Length = 475
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 158/282 (56%), Gaps = 11/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH+ E+ ++ IYD A+ G+ + + V IH+GSRG GHQVATD + +K M +
Sbjct: 199 AGNHFLEVDYIETIYDAEYAAAFGLRE-HDIVVWIHTGSRGLGHQVATDFINLFKKKMDQ 257
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I + +LA +++ + + + + + H + AF + +
Sbjct: 258 YKIPLYNHELAALPFKTSEGRQYFAAMSAAANYAWVNRQIITHQVRTAFEQVYPDLMAGQ 317
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +IYDV+HNIAK E H DGK+ LLVHRKG TRAFP HP + + GQPVL+ G
Sbjct: 318 SIDLIYDVAHNIAKEEVH--DGKK--LLVHRKGGTRAFPAGHPELEGPFAQYGQPVLLPG 373
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
M SY+L GT M ETFGST HGAGR LSR ++ R ++++ + I + A
Sbjct: 374 DMKRGSYILVGTGASMDETFGSTAHGAGRRLSRNEAVRRYQFEDISADMAQHHIRLFAAD 433
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K+ EEAP++YKNV +VV GI++ + RP+ VIKG
Sbjct: 434 KKVAREEAPDAYKNVDEVVGPIVHAGIARPVARSRPLLVIKG 475
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR G ++ + L + +F +P GVGS G + +++ L G W + G+
Sbjct: 102 LRTGLSRQAIEDRLDELGKRLFALVPSGVGSTGHRVFSKAEMKGLLSEGAPWIISAGFGV 161
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRG 543
D+ E G + AD VS +A +RG
Sbjct: 162 PSDQSAMESQGHLAAADAELVSEKAIERG 190
>gi|167037990|ref|YP_001665568.1| hypothetical protein Teth39_1588 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116406|ref|YP_004186565.1| hypothetical protein Thebr_1627 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856824|gb|ABY95232.1| protein of unknown function UPF0027 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929497|gb|ADV80182.1| protein of unknown function UPF0027 [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 454
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 167/283 (59%), Gaps = 19/283 (6%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ VD I+D+ A + G+ GQ+ MIH+GSRGFGHQ+ATD + +A K+
Sbjct: 181 GNHFIEIQQVDSIFDEKLAERFGLFK-GQIAAMIHTGSRGFGHQIATDYTKILWEAAKKY 239
Query: 197 NIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
++ ++ LA A I+S + KA+ K F + + M + AF + + +
Sbjct: 240 GVDVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIKAFEDVLKKSSESMG 299
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK EEH K LLVHRKG+TRA P HP P Y+ +G P LI G+
Sbjct: 300 FRLVYDVAHNIAKWEEH----GGKKLLVHRKGATRALPAGHPQNPSFYKESGHPALIPGS 355
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRR--NLDYQEVLNKLESQGISIRVA 368
MGT SYV+ GTEK ETF S HGAGR LSR K+++ ++++ + + V
Sbjct: 356 MGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNKAKKITKEEFEKAMGD-----VIYNVR 409
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S K +++E+P +YK+V +V+ GI+ +L P+AV+KG
Sbjct: 410 SFKDIVDESPLAYKDVEEVISVLSERGITTPVARLVPLAVVKG 452
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ V +VND L++L+ E+ ++QI N A LPG+V +G+PD+H
Sbjct: 1 MRVDAVIYVNDTLKELLHED--------------QSLRQITNAATLPGVVKPVIGMPDIH 46
>gi|448400350|ref|ZP_21571342.1| hypothetical protein C476_11233 [Haloterrigena limicola JCM 13563]
gi|445667373|gb|ELZ20016.1| hypothetical protein C476_11233 [Haloterrigena limicola JCM 13563]
Length = 487
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 160/284 (56%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG GHQ D L ++E+ +
Sbjct: 205 SGNHFLEVQRVTDVFDDEVGEAFGLEE-DQIVVLIHCGSRGLGHQTCNDYLRKIEQQHQG 263
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + N + L MH F + F+ + + +
Sbjct: 264 LLNQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLIMHRTRTVFERVFDRSWEAM 323
Query: 250 DMHVIYDVSHNIAKTEEHMV-DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+M ++YDV+HNIAK E H V DG+++ L VHRKG+TRAFP HP +P Y+ GQP++I
Sbjct: 324 EMDLLYDVAHNIAKKETHTVGDGEERELYVHRKGATRAFPAGHPDVPKAYRDVGQPIIIP 383
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV-LNKLESQGISIRV 367
G+MG SYVL G M TFGST HGAGR +SR +++ +V E + I ++
Sbjct: 384 GSMGAGSYVLRGGANSMDLTFGSTAHGAGRLMSRTQAKNEYWGGDVQQELEEQEQIYVKA 443
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 QSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 487
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L S+F +IP G+G G++ ++E L G+DW+L GY +D HCE+ G
Sbjct: 120 HEEELVDSLFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGYAVKDDLLHCEDEGM 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
A P K+S +AK RG Q+
Sbjct: 180 REGAAPEKISQKAKDRGKNQI 200
>gi|289577937|ref|YP_003476564.1| hypothetical protein Thit_0712 [Thermoanaerobacter italicus Ab9]
gi|289527650|gb|ADD02002.1| protein of unknown function UPF0027 [Thermoanaerobacter italicus
Ab9]
Length = 502
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 167/282 (59%), Gaps = 15/282 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ EIQ VD I D+ A + G+ GQ+ VMIH+GSRGFGHQ+ATD + +A K+
Sbjct: 228 GGNHFIEIQQVDSILDEKLAERFGLFK-GQIAVMIHTGSRGFGHQIATDYTKILWEAAKK 286
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
++ ++ LA A I+S + KA+ K F + + M + AF + + +
Sbjct: 287 YGVDVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIKAFEDVLKKSSESM 346
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++YDV+HNIAK EEH K LLVHRKG+TRA P HP P Y+ +G P LI G
Sbjct: 347 GFQLVYDVAHNIAKWEEH----GGKKLLVHRKGATRALPAGHPQNPSFYKESGHPALIPG 402
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ GTEK ETF S HGAGR LSR K+++ + +E + ++R S
Sbjct: 403 SMGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNKAKK-ITKEEFEKAMGDVIYNVR--S 458
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K +++E+P +YK+V +V+ GI+ +L P+AV+KG
Sbjct: 459 FKDIVDESPLAYKDVEEVISVLSERGITTPVARLIPLAVVKG 500
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ V +VND L++L+ E+ ++QI N A LPG+V +G+PD+H
Sbjct: 49 MRVDAVIYVNDTLKELLHED--------------QSLRQITNAATLPGVVKPVIGMPDIH 94
>gi|297544210|ref|YP_003676512.1| hypothetical protein Tmath_0763 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841985|gb|ADH60501.1| protein of unknown function UPF0027 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 502
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 167/282 (59%), Gaps = 15/282 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ EIQ VD I D+ A + G+ GQ+ VMIH+GSRGFGHQ+ATD + +A K+
Sbjct: 228 GGNHFIEIQQVDSILDEKLAERFGLFK-GQIAVMIHTGSRGFGHQIATDYTKILWEAAKK 286
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
++ ++ LA A I+S + KA+ K F + + M + AF + + +
Sbjct: 287 YGVDVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIKAFEDVLKKSSESM 346
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++YDV+HNIAK EEH K LLVHRKG+TRA P HP P Y+ +G P LI G
Sbjct: 347 GFQLVYDVAHNIAKWEEH----GGKKLLVHRKGATRALPAGHPQNPSFYKESGHPALIPG 402
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYV+ GTEK ETF S HGAGR LSR K+++ + +E + ++R S
Sbjct: 403 SMGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNKAKK-ITKEEFEKAMGDVIYNVR--S 458
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K +++E+P +YK+V +V+ GI+ +L P+AV+KG
Sbjct: 459 FKDIVDESPLAYKDVEEVISVLSERGITTPVARLIPLAVVKG 500
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ V +VND L++L+ E+ ++QI N A LPG+V +G+PD+H
Sbjct: 49 MRVDAVIYVNDTLKELLHED--------------QSLRQITNAATLPGVVKPVIGMPDIH 94
>gi|448565376|ref|ZP_21636243.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
prahovense DSM 18310]
gi|445715120|gb|ELZ66876.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
prahovense DSM 18310]
Length = 501
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 164/298 (55%), Gaps = 23/298 (7%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +IY + A G+E Q+ V+IH GSRG GHQ TD L ++EK K
Sbjct: 205 SGNHFLEVQRVTDIYREDVAESFGLE-ADQIVVLIHCGSRGLGHQTCTDYLRRIEKEHKD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ D++LA A S + + A F L MH + FA F+ D+
Sbjct: 264 LLDDLPDKELAAAPAGSALAEEYYGAMCAAINFAWVNRQLIMHRTREVFADVFDRDWRDM 323
Query: 250 DMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+M ++YDV+HNIAK E H V+ +++ L VHRKG+TRAFP P +
Sbjct: 324 EMRLLYDVAHNIAKKEVHEVGVDPEGRPVRDSDAVEREERELYVHRKGATRAFPAGRPEL 383
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P Y GQPV+I G+MG SYVL G ++ + TFGST HGAGR +SR K+++ + V
Sbjct: 384 PPAYAEVGQPVIIPGSMGAGSYVLRGGDQSLDLTFGSTAHGAGRLMSRTKAKQEYWGETV 443
Query: 355 LNKL-ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++L E + I ++ S V EEAP YK+V +VV +GI K + PV IKG
Sbjct: 444 QDELREQEKIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFPVCNIKG 501
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H E L ++F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G
Sbjct: 120 HEEELVDALFEAVPSGLGGGGVVTGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGF 179
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
+A P VS +AK RG Q+
Sbjct: 180 RDDARPEFVSQKAKDRGRNQI 200
>gi|345017194|ref|YP_004819547.1| hypothetical protein Thewi_0832 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032537|gb|AEM78263.1| protein of unknown function UPF0027 [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 487
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 161/281 (57%), Gaps = 15/281 (5%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ VD I D+ A + G+ GQ+ +MIH+GSRGFGHQ+ATD + +A K+
Sbjct: 214 GNHFIEIQRVDSILDEKLAKQFGLFK-GQIVIMIHTGSRGFGHQIATDYTKILWEAAKKY 272
Query: 197 NIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
IE ++ LA A I S + + + K F + + M + AF + + +
Sbjct: 273 GIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFSNRQIIMFDVIRAFEDVLKKSEESMG 332
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK E H K LLVHRKG+TRA P HP P Y+ TG P LI G+
Sbjct: 333 FQLVYDVAHNIAKWEVH----GGKRLLVHRKGATRALPSGHPQNPSFYKETGHPALIPGS 388
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYV+ GTEK ETF S HGAGR LSR K+++ + +E + ++R S
Sbjct: 389 MGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNKAKK-ISKEEFEKAMGDVIYNVR--SY 444
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + +E+P +YK+V +VV I+ + P+AV+KG
Sbjct: 445 KDIADESPLAYKDVEEVVSVLEKREITIPVARFVPLAVVKG 485
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 454 SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDL-EEALEMGMDWSLREGY 512
SL Y +KE +L + + ++P G+G KG R + + + G++ ++ G+
Sbjct: 117 SLEAAYF---NKELLYKLIERIEYYVPTGIGKKGRHKGITRVIFNDVVHNGVEAVIKAGF 173
Query: 513 IWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D E+ EE GR+ AD S VS A++RG Q+
Sbjct: 174 GKKSDLEYIEENGRLSGADLSAVSKEARERGEEQL 208
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ V +VND L++ + E+ ++Q+ N A+LPG+V +G+PD+H
Sbjct: 34 MKVDAVIYVNDALKEFLHED--------------QSLRQLVNAASLPGVVEPVIGMPDIH 79
>gi|222480435|ref|YP_002566672.1| hypothetical protein Hlac_2024 [Halorubrum lacusprofundi ATCC
49239]
gi|222453337|gb|ACM57602.1| protein of unknown function UPF0027 [Halorubrum lacusprofundi ATCC
49239]
Length = 502
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 161/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A + G+E+ G + V+IH GSRG GHQ D L Q+EK
Sbjct: 205 SGNHFLEVQRVTDVFREEVADEYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRQIEKKHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
E D++LA A S + F L H F + F+ P +D
Sbjct: 264 LLAELPDKELAAAPAGSELADEYYGAMGACINFAWVNRQLITHQARKTFGEVFDADPIED 323
Query: 249 LDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPL 293
L+M ++YDV+HNIAK E H VD + L VHRKG+TRAFP H
Sbjct: 324 LEMELLYDVAHNIAKKETHEVGVDADGLPAVGDEAVDRADRELYVHRKGATRAFPAGHED 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ ++
Sbjct: 384 VPEVYRDVGQPVIIPGSMGAGSYVLRGGDESMGVSFGSTAHGAGRLMSRTQAKQEFWGED 443
Query: 354 VLNKLES-QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQQIYVKARSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 502
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A
Sbjct: 124 LVNALFEAIPSGLGGGGVIEGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +A RG Q+
Sbjct: 184 RPEYVSQKAMDRGRNQM 200
>gi|338174272|ref|YP_004651082.1| hypothetical protein PUV_02780 [Parachlamydia acanthamoebae UV-7]
gi|336478630|emb|CCB85228.1| UPF0027 protein TK0358 [Parachlamydia acanthamoebae UV-7]
Length = 476
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 161/282 (57%), Gaps = 13/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI + +++ A G+E GQ ++IHSGSRGFGHQV D L K
Sbjct: 202 SGNHFVEIGEIQKLFLPEIAKAWGVEQ-GQTYILIHSGSRGFGHQVCQDTLDDFLKQGYA 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLD------MHVIYDAFAKQFNTTPDDL 249
+ DRQL A I+S + + K + +H + +F + P+++
Sbjct: 261 KGLP--DRQLVAAPIHSEAGRNYFKAMAAAANYAFNNRQQILHAVRQSFFETCKIAPEEI 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDV HNIAK E H ++G+ + L VHRKG+TRAF + ++ TGQPVL+ G
Sbjct: 319 RL--LYDVCHNIAKFETHEINGEMRKLCVHRKGATRAFGVGAQELNPLFRQTGQPVLVPG 376
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG S+++ G KG T+ S+CHGAGRA SR +S ++ ++ + ++ QGI+++ S
Sbjct: 377 DMGRASHLMVG--KGNPLTWCSSCHGAGRAKSRIQSLKSWKQKDPIRYMKEQGITVKANS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P+ + EE P++YK+V VVD G++ K +L+P VIKG
Sbjct: 435 PRTIAEEMPDAYKDVDSVVDAVQEAGLADKVARLKPSLVIKG 476
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 471 LAQSMFDHIPVGVG---SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
L ++F ++P GVG SK ++ D +E + G WS+ GY + D E+ E G +
Sbjct: 118 LLNAIFRNVPSGVGHGFSKMKKKLSNSDYQELISKGALWSIEHGYGFELDLEYMESRGFI 177
Query: 528 LNADPSKVSMRAKKRGLPQVSDRRGTGSSKYCHGVGSI 565
D S VS++A++RG Q+ GS + +G I
Sbjct: 178 AGGDLSAVSLQARERGESQLGS---IGSGNHFVEIGEI 212
>gi|282890206|ref|ZP_06298736.1| hypothetical protein pah_c014o070 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499863|gb|EFB42152.1| hypothetical protein pah_c014o070 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 476
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 161/282 (57%), Gaps = 13/282 (4%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI + +++ A G+E GQ ++IHSGSRGFGHQV D L K
Sbjct: 202 SGNHFVEIGEIQKLFLPEIAKAWGVEQ-GQTYILIHSGSRGFGHQVCQDTLDDFLKQGYA 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLD------MHVIYDAFAKQFNTTPDDL 249
+ DRQL A I+S + + K + +H + +F + P+++
Sbjct: 261 KGLP--DRQLVAAPIHSEAGRNYFKAMAAAANYAFNNRQQILHAVRQSFFETCKIAPEEI 318
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ +YDV HNIAK E H ++G+ + L VHRKG+TRAF + ++ TGQPVL+ G
Sbjct: 319 RL--LYDVCHNIAKFETHEINGEMRKLCVHRKGATRAFGVGAQELNPLFRQTGQPVLVPG 376
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MG S+++ G KG T+ S+CHGAGRA SR +S ++ ++ + ++ QGI+++ S
Sbjct: 377 DMGRASHLMVG--KGNPLTWCSSCHGAGRAKSRIQSLKSWKQKDPIRYMKEQGITVKANS 434
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P+ + EE P++YK+V VVD G++ K +L+P VIKG
Sbjct: 435 PRTIAEEMPDAYKDVDSVVDAVQEAGLADKVARLKPSLVIKG 476
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 471 LAQSMFDHIPVGVG---SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
L ++F ++P GVG SK ++ D +E + G WS+ GY + D E+ E G +
Sbjct: 118 LLNAIFRNVPSGVGHGFSKMKKKLSNSDYQELISKGALWSIEHGYGFELDLEYMESRGFI 177
Query: 528 LNADPSKVSMRAKKRGLPQVSDRRGTGSSKYCHGVGSI 565
D S VS++A++RG Q+ GS + +G I
Sbjct: 178 AGGDLSAVSLQARERGESQLGS---IGSGNHFVEIGEI 212
>gi|448485198|ref|ZP_21606506.1| hypothetical protein C462_14043 [Halorubrum arcis JCM 13916]
gi|448504848|ref|ZP_21614142.1| hypothetical protein C465_01264 [Halorubrum distributum JCM 9100]
gi|448518729|ref|ZP_21617736.1| hypothetical protein C466_03582 [Halorubrum distributum JCM 10118]
gi|445701544|gb|ELZ53521.1| hypothetical protein C465_01264 [Halorubrum distributum JCM 9100]
gi|445704662|gb|ELZ56572.1| hypothetical protein C466_03582 [Halorubrum distributum JCM 10118]
gi|445818543|gb|EMA68398.1| hypothetical protein C462_14043 [Halorubrum arcis JCM 13916]
Length = 502
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 159/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG GHQ D L Q+EK
Sbjct: 205 SGNHFLEVQRVTDVFRADVAESYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRQIEKEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
E D++LA A S + + F L H F + F+ P +D
Sbjct: 264 LLDELPDKELAAAPAGSELAEEYYGAMGACINFAWVNRQLITHQARKTFGEVFDADPIED 323
Query: 249 LDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H VD ++ L VHRKG+TRAFP +
Sbjct: 324 LGMELLYDVAHNIAKKETHEVGVDAEGRPAVGDEAVDRAERELYVHRKGATRAFPAGNAD 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPETYRDVGQPVIIPGSMGAGSYVLRGGDQSMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQQIYVKAQSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 502
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR
Sbjct: 122 EELVDALFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 182 DARPEYVSQKAMDRGRNQM 200
>gi|448499735|ref|ZP_21611435.1| hypothetical protein C464_05073 [Halorubrum coriense DSM 10284]
gi|445697200|gb|ELZ49272.1| hypothetical protein C464_05073 [Halorubrum coriense DSM 10284]
Length = 979
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 161/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG GHQ D L ++EK
Sbjct: 682 SGNHFLEVQRVTDVFRGDVAEAYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRRIEKEHGD 740
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
+ D++LA A S + + F L H + + F + F+ P DD
Sbjct: 741 LLADLPDKELAAAPAGSELAEEYYGAMGACINFAWVNRQLITHQVRETFGEVFDADPIDD 800
Query: 249 LDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H VD ++ L VHRKG+TRAFP +
Sbjct: 801 LGMELLYDVAHNIAKKETHEVGVDAEGRPAVGDAAVDRAERELYVHRKGATRAFPAGNED 860
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 861 VPETYREVGQPVIIPGSMGAGSYVLRGGDESMGVSFGSTAHGAGRLMSRTQAKQEFWGGD 920
Query: 354 VLNKLES-QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 921 VRDDLEDGQQIYVKAQSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 979
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ +P G+G G++ A +E ALE G++W++ GY D HCE+ GR
Sbjct: 599 EELVDALFEAVPSGLGGGGVVKGTADAVEGALERGVEWAVEAGYGIESDLAHCEDEGRRP 658
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 659 DARPEHVSQKAMDRGRNQM 677
>gi|448425570|ref|ZP_21582900.1| hypothetical protein C473_07814 [Halorubrum terrestre JCM 10247]
gi|445680641|gb|ELZ33084.1| hypothetical protein C473_07814 [Halorubrum terrestre JCM 10247]
Length = 502
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 159/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG GHQ D L Q+EK
Sbjct: 205 SGNHFLEVQRVTDVFRADVAESYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRQIEKEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
E D++LA A S + + F L H F + F+ P +D
Sbjct: 264 LLDELPDKELAAAPAGSELAEEYYGAMGACINFAWVNRQLITHQARKTFGEVFDADPIED 323
Query: 249 LDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H VD ++ L VHRKG+TRAFP +
Sbjct: 324 LGMELLYDVAHNIAKKETHEVGVDAEGRPAVGDEAVDRAERELYVHRKGATRAFPAGNAD 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPETYRDVGQPVIIPGSMGAGSYVLRGGDQSMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQRIYVKAQSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 502
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR
Sbjct: 122 EELVDALFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 182 DARPEYVSQKAMDRGRNQM 200
>gi|448453026|ref|ZP_21593626.1| hypothetical protein C470_12883 [Halorubrum litoreum JCM 13561]
gi|445808113|gb|EMA58188.1| hypothetical protein C470_12883 [Halorubrum litoreum JCM 13561]
Length = 502
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 159/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG GHQ D L Q+EK
Sbjct: 205 SGNHFLEVQRVTDVFRADVAESYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRQIEKEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
E D++LA A S + + F L H F + F+ P +D
Sbjct: 264 LLDELPDKELAAAPAGSELAEEYYGAMGACINFAWVNRQLISHQARKTFGEVFDADPIED 323
Query: 249 LDMHVIYDVSHNIAKTEEHMV---------------DGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H V D ++ L VHRKG+TRAFP +
Sbjct: 324 LGMELLYDVAHNIAKKETHEVGVDAEGRPAVGDEEVDRAERELYVHRKGATRAFPAGNAD 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPETYRDVGQPVIIPGSMGAGSYVLRGGDQSMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQQIYVKAQSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 502
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR
Sbjct: 122 EELVNALFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 182 DARPEYVSQKAMDRGRNQM 200
>gi|326391486|ref|ZP_08213020.1| protein of unknown function UPF0027 [Thermoanaerobacter ethanolicus
JW 200]
gi|325992462|gb|EGD50920.1| protein of unknown function UPF0027 [Thermoanaerobacter ethanolicus
JW 200]
Length = 483
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 162/281 (57%), Gaps = 15/281 (5%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ VD I D+ A + G+ GQ+ +MIH+GSRGFGHQ+ATD + A K+
Sbjct: 210 GNHFIEIQRVDSILDEKLARQFGLFK-GQIVIMIHTGSRGFGHQIATDYTKILWVAAKKY 268
Query: 197 NIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
IE ++ LA A I+S + KA+ K F + + M + AF + + +
Sbjct: 269 GIEVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIRAFEDVLKKSEESMG 328
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK E H K LLVHRKG+TRA P HP P Y+ +G P LI G+
Sbjct: 329 FQLVYDVAHNIAKWEVH----GGKKLLVHRKGATRALPSGHPQNPSFYKESGHPALIPGS 384
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYV+ GTEK ETF S HGAGR LSR K+++ + +E + ++R S
Sbjct: 385 MGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNKAKK-ISKEEFEKAMGDVIYNVR--SY 440
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + +E+P +YK+V +VV I+ + P+AV+KG
Sbjct: 441 KDIADESPLAYKDVEEVVSVLEKREITIPAARFVPLAVVKG 481
>gi|392940497|ref|ZP_10306141.1| hypothetical protein ThesiDRAFT1_1810 [Thermoanaerobacter
siderophilus SR4]
gi|392292247|gb|EIW00691.1| hypothetical protein ThesiDRAFT1_1810 [Thermoanaerobacter
siderophilus SR4]
Length = 483
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 162/281 (57%), Gaps = 15/281 (5%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ VD I D+ A + G+ GQ+ VMIH+GSRGFGHQ+ATD + +A K+
Sbjct: 210 GNHFIEIQRVDSILDEKLARQFGLFK-GQIVVMIHTGSRGFGHQIATDYTKILWEAAKKY 268
Query: 197 NIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
IE ++ LA A I+S + KA+ K F + + M + AF + + +
Sbjct: 269 GIEVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVMKAFEDVLKKSSESMG 328
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
++YDV+HNIAK E H + LLVHRKG+TRA P HP P Y +G P LI G+
Sbjct: 329 FQLVYDVAHNIAKWEIH----GGRRLLVHRKGATRALPAGHPQNPSVYMNSGHPALIPGS 384
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYV+ GTEK ETF S HGAGR LSR K+++ + +E + ++R S
Sbjct: 385 MGTGSYVVVGTEKA-AETFYSVNHGAGRRLSRNKAKK-ISKEEFEKAMGDVVYNVR--SY 440
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K + +E+P +YK+V +VV I+ + P+AV+KG
Sbjct: 441 KDIADESPLAYKDVEEVVSVLEKREITIPVARFVPLAVVKG 481
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+ V +VND L++L+ E+ +KQ+ N A+LPG+V +G+PD+H
Sbjct: 30 MRVDAVIYVNDTLKELLYED--------------QSLKQLVNAASLPGVVEPVIGMPDIH 75
>gi|448440711|ref|ZP_21588789.1| hypothetical protein C471_04735 [Halorubrum saccharovorum DSM 1137]
gi|445690097|gb|ELZ42318.1| hypothetical protein C471_04735 [Halorubrum saccharovorum DSM 1137]
Length = 502
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 161/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+ + G + V+IH GSRG GHQ D L ++EK
Sbjct: 205 SGNHFLEVQRVTDVFREAVAESYGLREDG-IVVLIHCGSRGLGHQTCNDYLRRIEKEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
+ D++LA A S + + F L H + F + F+ P +D
Sbjct: 264 LLADLPDKELAAAPAGSELAEEYYGAMGACINFAWVNRQLITHQARETFGEVFDADPIED 323
Query: 249 LDMHVIYDVSHNIAKTEEHMV----DGK-----------QKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H V DG+ + L VHRKG+TRAFP H
Sbjct: 324 LGMELLYDVAHNIAKKETHEVGVDDDGRPAVGDEAIDRADRELYVHRKGATRAFPAGHED 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPEAYRGVGQPVIIPGSMGAGSYVLRGGDQSMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQRIFVKAQSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 502
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A
Sbjct: 124 LVDALFEAIPSGLGGGGVIGGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +A RG Q+
Sbjct: 184 RPEYVSQKAMDRGRNQM 200
>gi|448459708|ref|ZP_21596758.1| hypothetical protein C469_13530 [Halorubrum lipolyticum DSM 21995]
gi|445808160|gb|EMA58234.1| hypothetical protein C469_13530 [Halorubrum lipolyticum DSM 21995]
Length = 502
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 159/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A + G+ + G + V+IH GSRG GHQ D L ++EK
Sbjct: 205 SGNHFLEVQRVTDVFREGVADEFGLREDG-IVVLIHCGSRGLGHQTCNDYLRRIEKEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
D++LA A S + F L H + F + F+ P DD
Sbjct: 264 LLDSLPDKELAAAPAGSELADEYYGAMGACINFAWVNRQLITHQARETFGEVFDADPIDD 323
Query: 249 LDMHVIYDVSHNIAKTEEHMV----DGK-----------QKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H V DG+ + L VHRKG+TRAFP H
Sbjct: 324 LGMELLYDVAHNIAKKETHEVGVDADGRPAVGDEATERADRELYVHRKGATRAFPAGHED 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G + M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPDAYRDVGQPVIIPGSMGAGSYVLRGGAESMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQRIYVKAQSGATIAEEAPGVYKDIDEVIRVSDDLGIGDKVARTFPVCNIKG 502
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A
Sbjct: 124 LVDALFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +A RG Q+
Sbjct: 184 RPEYVSQKAMDRGRNQM 200
>gi|448490701|ref|ZP_21608159.1| hypothetical protein C463_06005 [Halorubrum californiensis DSM
19288]
gi|445693819|gb|ELZ45961.1| hypothetical protein C463_06005 [Halorubrum californiensis DSM
19288]
Length = 502
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A G+E+ G + V+IH GSRG GHQ D L ++EK
Sbjct: 205 SGNHFLEVQRVTDVFREDVADAYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRRIEKEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
+ D++LA A S + + F L H + F + F+ P +D
Sbjct: 264 LLADLPDKELAAAPAGSELAEEYYGAMGACINFAWVNRQLITHQARETFGEVFDADPIED 323
Query: 249 LDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H VD + L VHRKG+TRAFP +
Sbjct: 324 LGMELLYDVAHNIAKKETHEVGVDADGLPAVGDEAVDRADRELYVHRKGATRAFPAGNED 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPETYRDVGQPVIIPGSMGAGSYVLRGGDESMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLES-QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQRIYVKAQSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 502
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ +P G+G G+I +A +E ALE G++W++ EGY D CE+ GR
Sbjct: 122 EELVDALFEAVPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 182 DARPEYVSQKAMDRGRNQM 200
>gi|448534046|ref|ZP_21621550.1| hypothetical protein C467_07055 [Halorubrum hochstenium ATCC
700873]
gi|445705261|gb|ELZ57162.1| hypothetical protein C467_07055 [Halorubrum hochstenium ATCC
700873]
Length = 502
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A++ G+E+ G + V+IH GSRG GHQ D L ++E+
Sbjct: 205 SGNHFLEVQRVTDVFREEVAAEYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRRIEQEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
+ D++LA A S + + F L H + F + F+ P +D
Sbjct: 264 LLDDLPDKELAAAPAGSQLAEEYYGAMGACINFAWANRQLITHQARETFGEVFDADPIED 323
Query: 249 LDMHVIYDVSHNIAKTEEHMV---------------DGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H + D +++ L VHRKG+TRAFP +
Sbjct: 324 LGMELLYDVAHNIAKKETHEIGVDAEGNPAVGDAVADREERELYVHRKGATRAFPAGNAD 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPEVYRGVGQPVIIPGSMGAGSYVLRGGDESMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQQIYVKAQSGATIAEEAPGVYKDIDEVIRVSDDLGIGDKVARTFPVCNIKG 502
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ IP G+G G+I A +E ALE G++W++ EGY D CE+ GR
Sbjct: 122 EELVDALFEAIPSGLGGGGVIGGTADAIEGALERGVEWAVEEGYGVESDLARCEDEGRRS 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 182 DARPEYVSQKAMDRGRNQM 200
>gi|448464428|ref|ZP_21598441.1| hypothetical protein C468_05763 [Halorubrum kocurii JCM 14978]
gi|124484034|emb|CAM32979.1| RtcB like protein [Archaeal BJ1 virus]
gi|445815540|gb|EMA65463.1| hypothetical protein C468_05763 [Halorubrum kocurii JCM 14978]
Length = 502
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 157/299 (52%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG GHQ D L ++EK
Sbjct: 205 SGNHFLEVQRVTDVFLPEVAESYGLEEDG-IVVLIHCGSRGLGHQTCNDYLRRIEKEHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
E D++LA A S + F L H F + F+ P ++
Sbjct: 264 LLAELPDKELAAAPAGSELADEYYGAMGACINFAWVNRQLITHQARRTFGEVFDADPVEE 323
Query: 249 LDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H VD ++ L VHRKG+TRAFP H
Sbjct: 324 LGMELLYDVAHNIAKKETHEVGVDADGRPAVGDEAVDRAERELYVHRKGATRAFPAGHED 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G + M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPEVYRDAGQPVIIPGSMGAGSYVLRGGAESMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQQIYVKAQSGATIAEEAPGVYKDIDEVIRVSDELGIGDKVARTFPVCNIKG 502
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
L ++F+ +P G+G G+I +A +E ALE G++W++ +GY D CE+ GR +A
Sbjct: 124 LVDALFEAVPSGLGGGGVIDGDADAIEGALERGVEWAVEQGYGIESDLARCEDEGRRPDA 183
Query: 531 DPSKVSMRAKKRGLPQV 547
P VS +A RG Q+
Sbjct: 184 RPEYVSQKATDRGRNQM 200
>gi|448431416|ref|ZP_21585083.1| hypothetical protein C472_02369 [Halorubrum tebenquichense DSM
14210]
gi|445687678|gb|ELZ39954.1| hypothetical protein C472_02369 [Halorubrum tebenquichense DSM
14210]
Length = 502
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 163/299 (54%), Gaps = 24/299 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V +++ + A++ G+ + G + V+IH GSRG GHQ D L ++E+
Sbjct: 205 SGNHFLEVQRVTDVFREDVAAEYGLREDG-IVVLIHCGSRGLGHQTCNDYLRRIEREHGD 263
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-DD 248
+ D++LA A S + + F L H + F + F+ P DD
Sbjct: 264 LLDDLPDKELAAAPAGSELAEEYYGAMGACINFAWANRQLITHQARETFGEVFDADPIDD 323
Query: 249 LDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHPL 293
L M ++YDV+HNIAK E H + D +++ L VHRKG+TRAFP +
Sbjct: 324 LGMELLYDVAHNIAKKETHEIGVDADGNPAVGDAVADREERELYVHRKGATRAFPAGNAD 383
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P Y+ GQPV+I G+MG SYVL G ++ M +FGST HGAGR +SR ++++ +
Sbjct: 384 VPEVYRGVGQPVIIPGSMGAGSYVLRGGDESMSVSFGSTAHGAGRLMSRTQAKQEFWGGD 443
Query: 354 VLNKLE-SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V + LE Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 444 VQDDLEDGQQIYVKAESGATIAEEAPGVYKDIDEVIRVSDDLGIGDKVARTFPVCNIKG 502
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ IP G+G G+I A +E ALE G++W++ EGY D CE+ GR L
Sbjct: 122 EELVDALFEAIPSGLGGGGVIGGTADAIEGALERGVEWAVEEGYGVESDLARCEDEGRRL 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 182 DARPEYVSQKAMDRGRNQM 200
>gi|302390272|ref|YP_003826093.1| hypothetical protein Toce_1735 [Thermosediminibacter oceani DSM
16646]
gi|302200900|gb|ADL08470.1| protein of unknown function UPF0027 [Thermosediminibacter oceani
DSM 16646]
Length = 477
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 176/313 (56%), Gaps = 22/313 (7%)
Query: 112 IEDVGQV----CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGI-EDVG 164
IED G + + +R Q+AT GNH+ EI V +++D+ A + G+ +D+
Sbjct: 169 IEDRGCIPGGDAAAVPKAARERADQLATIGGGNHFIEIGRVAKVFDQETAERFGLFKDM- 227
Query: 165 QVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARI------NSNKNKAF 218
V V+IH+GSRG GHQ+ TD M + +R+ + + LACA + N K A
Sbjct: 228 -VYVLIHTGSRGLGHQICTDYSRIMWEHSERNGSKAPVKGLACAPVFSEDGQNYLKAMAC 286
Query: 219 AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 278
A + L H + +AF + +L + ++YDV+HNIAK E+H + LLV
Sbjct: 287 AANYAFCNRQLITHFVREAFVEVLKKPESELGLDLLYDVAHNIAKKEKH----GGRWLLV 342
Query: 279 HRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGR 338
HRKG+TRA P H P Y+ TG P +I G+MGT SYVL G + + TF S HGAGR
Sbjct: 343 HRKGATRALPAGHGDNPPCYRDTGHPAIIPGSMGTASYVLVGLPE-IHRTFCSVNHGAGR 401
Query: 339 ALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISK 398
+SR +++ +++L +++ + I ++ K +++EAP +YK++ +VV T G++K
Sbjct: 402 VMSRKRAKSEFTREQLLE--QTKNVVIAASNLKALLDEAPLAYKDIDEVVFTLVDAGLTK 459
Query: 399 KTFKLRPVAVIKG 411
KL+P+ V+KG
Sbjct: 460 PVVKLKPMGVLKG 472
>gi|167616092|ref|ZP_02384727.1| hypothetical protein BthaB_07346 [Burkholderia thailandensis Bt4]
Length = 406
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q +++IYD A + G++ GQV V IH GSRG GHQ+ T+ L M A K
Sbjct: 200 SGNHYLEVQEIEDIYDPACAQRYGLQR-GQVVVTIHCGSRGLGHQIGTEFLKAMVIAAKS 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DR+LACA I S+ + + + + H+ + FAK
Sbjct: 259 YGIALPDRELACAPILSDLGERYLGAMRAAINCALANRQVLTHLTREVFAKVLPAA---- 314
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + YDVSHN K E+H++DG+++ L VHRKG+TRAF P HP +P + GQPVL+GG
Sbjct: 315 QLTLFYDVSHNTCKVEDHVIDGRRRQLYVHRKGATRAFGPGHPALPDALRDAGQPVLVGG 374
Query: 310 TMGTCSYVLTGTEK-GMQETFGSTCHGAGRAL 340
+MGT SYVL G G + FGS CHGAGRA+
Sbjct: 375 SMGTASYVLAGANAPGGERAFGSACHGAGRAM 406
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA ++F HIP G+GS G + ++A ++ L G W++ +GY D E EE G + +A
Sbjct: 119 LADALFAHIPAGIGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIEEGGMVRHA 178
Query: 531 DPSKVSMRAKKR 542
PS VS AK+R
Sbjct: 179 KPSMVSALAKRR 190
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ + LA ++F HIP G+GS G + ++A ++ L G W++ +GY D E E
Sbjct: 115 VKKTLADALFAHIPAGIGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIE 170
>gi|448475026|ref|ZP_21602791.1| hypothetical protein C461_10336 [Halorubrum aidingense JCM 13560]
gi|445817018|gb|EMA66900.1| hypothetical protein C461_10336 [Halorubrum aidingense JCM 13560]
Length = 502
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 159/300 (53%), Gaps = 26/300 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGI-EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
+GNH+ E+Q V +++ A G+ ED + V+IH GSRG GHQ D L ++EK
Sbjct: 205 SGNHFLEVQRVTDVFLDDVAESYGLAEDA--IVVLIHCGSRGLGHQTCNDYLRRIEKRHG 262
Query: 195 RDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP-D 247
D++LA A S + + F L H + F + F+ P D
Sbjct: 263 DLLDSLPDKELAAAPAGSALAEEYYGAMGACINFAWVNRQLITHQTRETFGEVFDADPID 322
Query: 248 DLDMHVIYDVSHNIAKTEEH---------------MVDGKQKTLLVHRKGSTRAFPPHHP 292
DL M ++YDV+HNIAK E H VD ++ L VHRKG+TRAFP H
Sbjct: 323 DLGMELLYDVAHNIAKKETHEVGVDEDGVPAVGDEAVDRAERELYVHRKGATRAFPAGHE 382
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
+P Y+ GQPV+I G+MG SYVL G + M+ +FGST HGAGR +SR ++++
Sbjct: 383 DVPAVYRDVGQPVIIPGSMGAGSYVLRGGAESMRVSFGSTAHGAGRLMSRTQAKQEFWGG 442
Query: 353 EVLNKLES-QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V + LES Q I ++ S + EEAP YK++ +V+ +GI K + PV IKG
Sbjct: 443 DVRDDLESGQQIYVKAQSGATIAEEAPGVYKDIDEVIRVSDDLGIGDKVARTFPVCNIKG 502
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E L ++F+ IP G+G G+I +A +E ALE G++W++ EGY D HCE+ GR
Sbjct: 122 EELVNALFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLTHCEDEGRRP 181
Query: 529 NADPSKVSMRAKKRGLPQV 547
+A P VS +A RG Q+
Sbjct: 182 DARPEYVSQKAIDRGRNQL 200
>gi|338732566|ref|YP_004671039.1| hypothetical protein SNE_A06710 [Simkania negevensis Z]
gi|336481949|emb|CCB88548.1| UPF0027 protein TK0358 [Simkania negevensis Z]
Length = 475
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 172/309 (55%), Gaps = 18/309 (5%)
Query: 112 IEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 169
IE V H+ RG Q+ T +GNH+ EI V + AS GIE+ G M
Sbjct: 176 IEGADLAAVSEHALERGR-DQLGTIGSGNHFVEIGEVQRVLLADVASAWGIEE-GMTYAM 233
Query: 170 IHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL 229
IHSGSRGFGHQV D L K + + DRQL A INS + +A+ +
Sbjct: 234 IHSGSRGFGHQVCQDTLNIFIKKGFHEGLP--DRQLVAAPINSGEGRAYFAGMAAAANFA 291
Query: 230 D------MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGS 283
+H + AF N +++ + IYDV HNIAK E H ++G+Q+ + VHRKG+
Sbjct: 292 FNNRQQILHEVRQAFHDVCNVKMEEVRL--IYDVCHNIAKFETHWIEGEQRKVCVHRKGA 349
Query: 284 TRAFP-PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSR 342
TRA+ L+P+ ++ TGQPVL+ G MG SY+L G G TF S+CHGAGRA SR
Sbjct: 350 TRAYGMGAEELMPL-FKKTGQPVLVPGDMGRASYLLVGL--GNPLTFSSSCHGAGRARSR 406
Query: 343 AKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFK 402
+S ++ ++++ ++++G+ + +S + + EE P++YK+V VV+ ++ + +
Sbjct: 407 VQSLKSWQGIDLIDHMKTKGVIVMASSNRTIAEEMPDAYKDVDTVVEAVEEAKLANRVAR 466
Query: 403 LRPVAVIKG 411
LRP V+KG
Sbjct: 467 LRPHLVLKG 475
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 466 EHFERLAQSMFDHIPVGVG--SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEE 523
E ++L + +++ +P GVG KG ++ +D + ++ G +S+ GY + +D EH E
Sbjct: 113 EMKKKLIEKIYEIVPSGVGRGQKGKKALSQKDYQTLVKQGARYSIELGYGFPQDLEHIES 172
Query: 524 YGRMLNADPSKVSMRAKKRGLPQV 547
+G + AD + VS A +RG Q+
Sbjct: 173 HGCIEGADLAAVSEHALERGRDQL 196
>gi|406873102|gb|EKD23357.1| hypothetical protein ACD_82C00097G0001 [uncultured bacterium]
Length = 216
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 130/214 (60%), Gaps = 5/214 (2%)
Query: 202 DRQLACARINSNKNKAF--AKQFNTTPDDLDMHVI--YDAFAKQFNTTPDDLDMHVIYDV 257
DRQL CA S + + + A + H I + A Q PD ++ +YDV
Sbjct: 3 DRQLVCAPFKSQEGQDYFGAMAAAANFAWANRHTISHWTREAWQKILGPDAY-LNTLYDV 61
Query: 258 SHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV 317
SHN+ K E+H VDG +K LL+HRKG+TR+F P P+ Y+ GQPVLI GTMGT SYV
Sbjct: 62 SHNLGKIEKHKVDGIEKELLLHRKGATRSFGPGTVETPLKYRGIGQPVLIPGTMGTASYV 121
Query: 318 LTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEA 377
L G + M+ +FGS CHGAGR++SR K+++ + + +LE+ GI+IR S + EEA
Sbjct: 122 LAGASESMENSFGSCCHGAGRSMSRMKAKKTVRGSNLRQELENIGITIRCDSDAGLAEEA 181
Query: 378 PESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
P +YK+V +VV ++ K +LRP+AVIKG
Sbjct: 182 PIAYKDVDNVVSVVQEAKLASKVARLRPLAVIKG 215
>gi|78044051|ref|YP_359049.1| hypothetical protein CHY_0177 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996166|gb|ABB15065.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 467
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/474 (29%), Positives = 219/474 (46%), Gaps = 89/474 (18%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEG+ + EKL+ R+ +KQ+ N A+LPG+ G+PD+H
Sbjct: 18 MQVEGLIIAS---EKLLPALYRDES-----------LKQLQNAASLPGVYRAVYGMPDLH 63
Query: 61 S---------------------------------VPSTQWLSDNTMRS------SNIWKR 81
+ +T +L++ R I K
Sbjct: 64 EGFGLPIGGVMATVLPEGLISAGAVGMDINCGVRLLTTPFLAEEISRERLAELIKAIEKY 123
Query: 82 SPLTLGAGNHYAEIQ-------------IVDEIYDKWAASKMGIEDVGQVC--------- 119
P +G N E++ +++E Y +A IE+ G +
Sbjct: 124 VPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYG-FAEDLNKIEEGGVLAGAEIKALSE 182
Query: 120 VMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ G+ G G GNH+ E+Q+V E+ A G+ G +C+M+H+GSRG GH
Sbjct: 183 TALSRGAEGLG--TLGGGNHFIEVQVVAEVRRWEVAQSFGLYP-GMLCLMVHTGSRGLGH 239
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDA 237
QV TD + KA + N+ + LA +S + + + + + + + +I
Sbjct: 240 QVCTDYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHY 299
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
+ F + D + ++YD++HNIAK E H DG + +LVHRKG+TRA P H
Sbjct: 300 LRQVFKSYLGDGKLDLVYDLAHNIAKEEYH--DGIK--VLVHRKGATRALPAGHRENLPQ 355
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
++ GQPVLI G+MGT SYVL T + TF S HGAGR++SR S +NL EV
Sbjct: 356 FREIGQPVLIPGSMGTKSYVLRATSN-ISLTFNSLNHGAGRSMSRKASLKNLTVSEVKKA 414
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L ++ +V + V +EAP++YK++ V++ G+++ L+P+AVIKG
Sbjct: 415 LGDVILNEKV---EYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKG 465
>gi|310643428|ref|YP_003948186.1| hypothetical protein [Paenibacillus polymyxa SC2]
gi|309248378|gb|ADO57945.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 497
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 28/290 (9%)
Query: 137 GNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME 190
GNH+ EIQ ++ E+ + W G+ D GQV VMIHSGSR +G V+ + +
Sbjct: 219 GNHFVEIQAIEIAEENREVAEAW-----GMFD-GQVAVMIHSGSRAWGGAVSQTSSSAIA 272
Query: 191 KAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNT 244
KAM R + T+D +L A +N + + A + L + + +AF F T
Sbjct: 273 KAMSRLGLGTSDPRLVFAPLNHPEAAHYVDMMYSALNYAVVNRHLIAYSVREAFRDVFGT 332
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
++ +YD+ HN A E H G ++ VHRKG+TRA P HP P YQ TG P
Sbjct: 333 ---KCELRTLYDLMHNYAWEESHSDHG---SVFVHRKGATRALPAGHPDNPRPYQSTGHP 386
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQ 361
LI G+MGT SY++ G G Q+ F S CHGAGR SR+ ++R + D+ L
Sbjct: 387 ALIPGSMGTASYIMVGLPGG-QDNFHSICHGAGRIRSRSATKRLVSVDDFAGALGVGRDD 445
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + AS + +++E+P++YKNV D++++ G++ K RP+A +KG
Sbjct: 446 EIVVNQASLESIIDESPQAYKNVDDIIESVTGAGLAAVVAKCRPLAALKG 495
>gi|392304191|emb|CCI70554.1| UPF0027 protein [Paenibacillus polymyxa M1]
Length = 457
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 28/290 (9%)
Query: 137 GNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME 190
GNH+ EIQ ++ E+ + W G+ D GQV VMIHSGSR +G V+ + +
Sbjct: 179 GNHFVEIQAIEIAEENREVAEAW-----GMFD-GQVAVMIHSGSRAWGGAVSQTSSSAIA 232
Query: 191 KAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNT 244
KAM R + T+D +L A +N + + A + L + + +AF F T
Sbjct: 233 KAMSRLGLGTSDPRLVFAPLNHPEAAHYVDMMYSALNYAVVNRHLIAYSVREAFRDVFGT 292
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
++ +YD+ HN A E H G ++ VHRKG+TRA P HP P YQ TG P
Sbjct: 293 ---KCELRTLYDLMHNYAWEESHSDHG---SVFVHRKGATRALPAGHPDNPRPYQSTGHP 346
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQ 361
LI G+MGT SY++ G G Q+ F S CHGAGR SR+ ++R + D+ L
Sbjct: 347 ALIPGSMGTASYIMVGLPGG-QDNFHSICHGAGRIRSRSATKRLVSVDDFAGALGVGRDD 405
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + AS + +++E+P++YKNV D++++ G++ K RP+A +KG
Sbjct: 406 EIVVNQASLESIIDESPQAYKNVDDIIESVTGAGLAAVVAKCRPLAALKG 455
>gi|389615208|dbj|BAM20590.1| simila to CG9987 [Papilio polytes]
Length = 276
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS+RAKKRGLPQ+
Sbjct: 202 NADPSKVSLRAKKRGLPQL 220
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 126/246 (51%), Gaps = 63/246 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+VN LEKLMLEELRNSCRPGM GGF LPG+
Sbjct: 31 MNVEGLFYVNSTLEKLMLEELRNSCRPGMTGGFLPGVKQIANVASLPGIVGHSIGLPDVH 90
Query: 39 -----QIANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I N+AA PG VG + L + +P + L+ +
Sbjct: 91 SGYGFAIGNMAAFDMSDPKSIVSPGGVGFDINCGVRLLRTNLSEKDVLPIKEQLAQSLFD 150
Query: 75 --SSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------VM 121
+ + + + A + +++ + E Y WA K E+ G++ V
Sbjct: 151 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLNADPSKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEI+DK+AASKMG+E GQV VMIHSGSRGFGH
Sbjct: 210 LRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFDKYAASKMGLERTGQVVVMIHSGSRGFGH 268
Query: 180 QVATDA 185
QVATD
Sbjct: 269 QVATDC 274
>gi|379724224|ref|YP_005316355.1| hypothetical protein PM3016_6585 [Paenibacillus mucilaginosus 3016]
gi|378572896|gb|AFC33206.1| hypothetical protein PM3016_6585 [Paenibacillus mucilaginosus 3016]
Length = 483
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 162/300 (54%), Gaps = 21/300 (7%)
Query: 123 HSGSRGFGHQVATAGNHYAEIQIVDEIYDKWA-ASKMGIEDVGQVCVMIHSGSRGFGHQV 181
H G R G +GNH+AEIQ ++ + A A + G++D GQ+ VMIHSGSR +G V
Sbjct: 195 HRGHRQLG--TLGSGNHFAEIQALEIPEEARATAEQWGLKD-GQIIVMIHSGSRAWGGAV 251
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
A ++ K M+ + T D +LA A ++S + + A + L + I
Sbjct: 252 NELAGREVAKWMRSSGMGTADPKLAFAPLDSEAGQLYLHLMYSALNYAVVNRHLIAYAIR 311
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+A F + +M +YD+ HN A EEH + + VHRKG+TRA PP HP P
Sbjct: 312 EAAKDVFGSR---FEMRTLYDLMHNYAWEEEH----EGEAYFVHRKGATRALPPGHPDNP 364
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQ 352
Y+ TG P LI G+MGT SY++ G +G + + S CHGAGR SR+ ++R + D+
Sbjct: 365 EPYRATGHPALIPGSMGTASYLMAGLPQG-RANYHSICHGAGRVRSRSATKRLVSAGDFA 423
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
L + + S + +++EAP++YK+V ++D+ G++ K P+AVIKG+
Sbjct: 424 SALGVGTPDEVVVNQRSLEAIVDEAPQAYKDVDAIIDSVVGAGLAGVVAKCVPLAVIKGV 483
>gi|300707248|ref|XP_002995841.1| hypothetical protein NCER_101173 [Nosema ceranae BRL01]
gi|239605064|gb|EEQ82170.1| hypothetical protein NCER_101173 [Nosema ceranae BRL01]
Length = 464
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 155/294 (52%), Gaps = 38/294 (12%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA--- 192
+GNHY EI+ VD+++D+ + + + + Q+ + IHSGSRG GH V ++L++
Sbjct: 188 SGNHYLEIEYVDKVFDRERCNILNLRE-NQIVISIHSGSRGLGHSVCKESLIKFNNEVKL 246
Query: 193 ------MKRDNIETN-------DRQLACARIN---SNKNKAFAKQFNTTPDDLDMHVIYD 236
+K NI N D +L+ +N S N AF + +I +
Sbjct: 247 KNNGGFLKDSNISINESVYLRADNKLSIEYMNAMASACNYAFGNR----------AMIQE 296
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
K L+ +IYD SHNIAK E + LV RKG++R P + +P
Sbjct: 297 KVIKSLKRIFPYLETELIYDTSHNIAKIETDL------NSLVIRKGASRILEPGNIELPY 350
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
Y+ GQPVL+GG+MGT SY++ G + +T+ STCHG+GR + R +S++ + E++
Sbjct: 351 KYKEIGQPVLVGGSMGTASYIICGDD--CIKTYRSTCHGSGRIIPRGESKKLFKHDEIVK 408
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
L + I I+ S ++EEAPE YKN+ +VV +S+ ++RP+ V+K
Sbjct: 409 DLHKRNIKIKSGSKLGIVEEAPECYKNIDEVVKCSELNKLSRTVCRVRPILVVK 462
>gi|337751210|ref|YP_004645372.1| hypothetical protein KNP414_06990 [Paenibacillus mucilaginosus
KNP414]
gi|336302399|gb|AEI45502.1| hypothetical protein KNP414_06990 [Paenibacillus mucilaginosus
KNP414]
Length = 483
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 123 HSGSRGFGHQVATAGNHYAEIQIVDEIYDKWA-ASKMGIEDVGQVCVMIHSGSRGFGHQV 181
H G R G +GNH+AEIQ ++ + A A + G++D GQ+ VMIHSGSR +G V
Sbjct: 195 HRGHRQLG--TLGSGNHFAEIQALEIPEEARATAEQWGLKD-GQIIVMIHSGSRAWGGAV 251
Query: 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIY 235
A ++ K M+ + T D +LA A ++S + + A + L + I
Sbjct: 252 NELAGREVAKWMRGSGMGTADPKLAFAPLDSEAGQLYLHLMYSALNYAVVNRHLIAYAIR 311
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+A F + +M +YD+ HN A EEH + VHRKG+TRA PP HP P
Sbjct: 312 EAAKDVFGSR---FEMRTLYDLMHNYAWEEEH----GGEAYFVHRKGATRALPPGHPDNP 364
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQ 352
Y+ TG P LI G+MGT SY++ G +G + + S CHGAGR SR+ ++R + D+
Sbjct: 365 EPYRATGHPALIPGSMGTASYLMAGLPQG-RANYHSICHGAGRVRSRSATKRLVCAGDFA 423
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
L + + S + +++EAP++YK+V ++D+ G++ K P+AVIKG+
Sbjct: 424 SALGVGTPDEVVVNQRSLEAIVDEAPQAYKDVDAIIDSVVGAGLAGVVAKCVPLAVIKGV 483
>gi|375309743|ref|ZP_09775023.1| hypothetical protein WG8_3548 [Paenibacillus sp. Aloe-11]
gi|375078107|gb|EHS56335.1| hypothetical protein WG8_3548 [Paenibacillus sp. Aloe-11]
Length = 466
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 155/285 (54%), Gaps = 18/285 (6%)
Query: 137 GNHYAEIQIVD-EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ EIQ ++ ++ A G+ D GQV VMIHSGSR +G V+ + + KAM R
Sbjct: 188 GNHFVEIQAIEIAEENRKTAEAWGMFD-GQVAVMIHSGSRAWGGAVSQTSSSAIAKAMGR 246
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ T+D +L A ++ + + A + L + + +AF F T
Sbjct: 247 LGLGTSDPRLVFAPLDHPEAVHYVDMMYSALNYAVVNRHLIAYSVREAFRDVFGT---KC 303
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++ +YD+ HN A E H G ++ VHRKG+TRA P HP P YQ TG P LI G
Sbjct: 304 ELRTLYDLMHNYAWKESHPEHG---SVFVHRKGATRALPAGHPDNPRPYQATGHPALIPG 360
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGISIR 366
+MGT SY++ G G Q+ F S CHGAGR SR+ ++R + D+ L I +
Sbjct: 361 SMGTASYIMVGLPGG-QDNFYSICHGAGRIRSRSATKRLISVDDFAGALGVGTDDEIVVN 419
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
AS + +++E+P++YKNV D++++ G++ K +P+A +KG
Sbjct: 420 QASLESILDESPQAYKNVDDIIESVTGAGLAAVVAKCKPLAALKG 464
>gi|390454999|ref|ZP_10240527.1| hypothetical protein PpeoK3_13329 [Paenibacillus peoriae KCTC 3763]
Length = 466
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 156/290 (53%), Gaps = 28/290 (9%)
Query: 137 GNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME 190
GNH+ EIQ ++ +I + W G+ D GQV VMIHSGSR +G V+ + +
Sbjct: 188 GNHFVEIQAIEIAEENRKIAEAW-----GMFD-GQVAVMIHSGSRAWGGAVSQTSSSAIA 241
Query: 191 KAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNT 244
KAM R + T+D +L A ++ + + A + L + + +AF F T
Sbjct: 242 KAMGRLGLGTSDPRLVFAPLDHPEAVHYVDMMYSALNYAVVNRHLIAYSVREAFHDVFGT 301
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
++ +YD+ HN A E H G ++ VHRKG+TRA P HP P YQ TG P
Sbjct: 302 ---KCELRTLYDLMHNYAWKESHPEHG---SVFVHRKGATRALPAGHPDNPRPYQATGHP 355
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQ 361
LI G+MGT SY++ G G Q+ F S CHGAGR SR+ ++R + D+ L
Sbjct: 356 ALIPGSMGTASYIMVGLPGG-QDNFHSICHGAGRIRSRSATKRLVSADDFAGALGVGTDD 414
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + AS + +++E+P++YKNV D++++ G++ K +P+A +KG
Sbjct: 415 EIVVNQASLESILDESPQAYKNVDDIIESVTGAGLAAVVAKCKPLAALKG 464
>gi|220933074|ref|YP_002509982.1| hypothetical protein Hore_22420 [Halothermothrix orenii H 168]
gi|219994384|gb|ACL70987.1| uncharacterized conserved protein [Halothermothrix orenii H 168]
Length = 447
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 160/279 (57%), Gaps = 23/279 (8%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ++D++Y+ + G+E+ GQ+ +MIH+GSRGFGHQ+A D + +K K+
Sbjct: 189 SGNHFLEIQVIDKVYNHNS----GLEE-GQISIMIHTGSRGFGHQIAEDYINIAKKRAKK 243
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDM-HVIYDAFAKQ-FNTTPDDLDMHV 253
N + + LA INS + + + + + I F +Q N + V
Sbjct: 244 YNFDFPTKNLASFPINSPEGEDYYRAMACAANFAFANRQILTHFVRQVINHFIPGTFITV 303
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
YD++HNI K E H ++GK+K LLVHRKG+T+ P L+P G+MGT
Sbjct: 304 YYDLAHNICKKEIHQINGKKKALLVHRKGATKLSPDGIALVP-------------GSMGT 350
Query: 314 CSYVLT-GTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
SY++ ++ ++ F S HGAGR + R ++R+ L Y+E L L + + A+
Sbjct: 351 DSYIVRPKNQEALKAAFESVSHGAGRKMGRRQARKKLSYREHLKSLGE--VRVTSATNDN 408
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++E+P +YK++++V+ + G+++ +L+P+AV+KG
Sbjct: 409 LLDESPLAYKDISEVIRSLKETGLAEPVVRLKPLAVLKG 447
>gi|308070237|ref|YP_003871842.1| hypothetical protein PPE_03487 [Paenibacillus polymyxa E681]
gi|305859516|gb|ADM71304.1| UPF0027 protein TK0358 [Paenibacillus polymyxa E681]
Length = 485
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 155/286 (54%), Gaps = 20/286 (6%)
Query: 137 GNHYAEIQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
GNH+ EIQ + EI ++ A G+ D GQV VMIHSGSR +G V+ + + K M
Sbjct: 207 GNHFVEIQTI-EIAEENRETAEAWGMFD-GQVAVMIHSGSRAWGGAVSQASSSAIAKVMS 264
Query: 195 RDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
R + T+D +L A ++ + + A + L + + +AF F T
Sbjct: 265 RLGLGTSDPRLVFAPLDHPEAAHYVDMMYSALNYAVVNRHLIAYSVREAFRDVFGT---K 321
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
++ +YD+ HN A E H G ++ VHRKG+TRA P HP P YQ TG P LI
Sbjct: 322 CELRTLYDLMHNYAWEESHSDHG---SVFVHRKGATRALPAGHPDNPRPYQATGHPALIP 378
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGISI 365
G+MGT SY++ G G Q+ F S CHGAGR SR+ ++R + D+ L I +
Sbjct: 379 GSMGTASYIMVGLPGG-QDNFHSICHGAGRIRSRSATKRLVSVDDFAGALGVGTDDEIVV 437
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
AS + +++E+P++YKNV D++++ G++ K +P+A +KG
Sbjct: 438 NQASLESIIDESPQAYKNVDDIIESVTGAGLAAVVAKCKPLAALKG 483
>gi|83814778|ref|YP_446591.1| hypothetical protein SRU_2493 [Salinibacter ruber DSM 13855]
gi|294508523|ref|YP_003572582.1| hypothetical protein SRM_02709 [Salinibacter ruber M8]
gi|83756172|gb|ABC44285.1| Uncharacterized protein family UPF0027 [Salinibacter ruber DSM
13855]
gi|294344852|emb|CBH25630.1| conserved hypothetical protein containing UPF0027 [Salinibacter
ruber M8]
Length = 476
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 146/281 (51%), Gaps = 13/281 (4%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
G H+ EI V+E++++ AA MG+++ G + IH GSRG+G QV D + + ++
Sbjct: 203 GEHFIEIHSVEEVFNRAAAVTMGLKE-GTLVAQIHCGSRGYGRQVCADYIERFQEVAPSY 261
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL------D 250
+I+ D LA ++S + + + + A + DDL
Sbjct: 262 DIDPPDPNLASVPLDSGEAEDYMGAMRAA--ANYAYANRQVLAHRVREVFDDLLEGAGER 319
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
+ +YDV+HN+ + E H VDGK VHRKG+ RAF P P I + Y+ GQPVL+ G+
Sbjct: 320 LKTVYDVAHNLGQVEMHQVDGKHMRCYVHRKGAARAFGPGTPGISLPYRALGQPVLVPGS 379
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MG S+V+ T MQ++FGS CHGAGR +SR ++ ++Q L+ G + V S
Sbjct: 380 MGETSWVMLATRDAMQKSFGSACHGAGRTMSRHEA----NHQAEPVPLDGDGDGVAVRSG 435
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +N+ VV+T ++ K +L P+AV+ G
Sbjct: 436 DGSASAGVQLKENIGGVVETVAGSRLAGKVARLEPLAVMHG 476
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + +F+ LA ++ +HIP G ++G I +N +++ + G W+LR+ +D E
Sbjct: 113 EAEGNFDALADALKNHIPSGTDAEGSISLNKSEVDHVAQSGAQWALRKDMAQQDDLVRAE 172
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GR+ ADP KVS A+ G Q+
Sbjct: 173 EGGRLNEADPKKVSEAARSIGAQQL 197
>gi|374325256|ref|YP_005078385.1| hypothetical protein HPL003_27250 [Paenibacillus terrae HPL-003]
gi|357204265|gb|AET62162.1| hypothetical protein HPL003_27250 [Paenibacillus terrae HPL-003]
Length = 485
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 153/290 (52%), Gaps = 28/290 (9%)
Query: 137 GNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME 190
GNH+ EIQ ++ EI + W G+ D GQV VM+HSGSR +G V+ + +
Sbjct: 207 GNHFVEIQAIEIAEHNREIAEAW-----GMFD-GQVAVMVHSGSRAWGGAVSQTSSSAIA 260
Query: 191 KAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNT 244
KAM R + T+D +L A + + + A + L + +AF F T
Sbjct: 261 KAMGRLGLGTSDPRLVFAPLEHPEAAHYINMMYSALNYAVVNRHLIAFSVREAFRDVFGT 320
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
++ +YD+ HN E H G ++ VHRKG+TRA P HP P Y+ TG P
Sbjct: 321 ---KCELRTLYDLMHNYGWEESHPDHG---SVFVHRKGATRALPAGHPNNPKPYRETGHP 374
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQ 361
LI G+MGT SY++ G G Q+ F S CHGAGR SR+ ++R + D+ L
Sbjct: 375 ALIPGSMGTSSYIMVGLPGG-QDNFHSICHGAGRIRSRSATKRLVSVDDFAGALGVGTDD 433
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + +S + +++E+P++YKNV D++++ G++ K +P+A +KG
Sbjct: 434 EIVVNQSSLESILDESPQAYKNVDDIIESVTGAGLATVVAKCKPLAALKG 483
>gi|357008866|ref|ZP_09073865.1| hypothetical protein PelgB_05270 [Paenibacillus elgii B69]
Length = 480
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 154/287 (53%), Gaps = 19/287 (6%)
Query: 136 AGNHYAEIQIVDEIYDKWA-ASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
+GNH+AEIQ ++ D A A K G+ D GQ+ VMIHSGSR +G V+ ++ K M+
Sbjct: 203 SGNHFAEIQAIEIHEDNRAIAEKWGLRD-GQIVVMIHSGSRAWGGAVSQYGGSEIGKWMR 261
Query: 195 RDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
R T D +L A ++S +A+ A + T L + I +AF +
Sbjct: 262 RTGTGTADPRLIFAPLDSEAAEAYVHLMYSALNYAVTNRHLIAYAIREAFR---DVCGSK 318
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+M +YD+ HN A E H L VHRKG+TRA P HP P Y TG P LI
Sbjct: 319 FEMTTLYDLMHNYAWEETH----GGTPLFVHRKGATRALPAQHPDNPEPYLATGHPALIP 374
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY++ G + G + + S CHGAGR SR+ ++R + + + L V
Sbjct: 375 GSMGTSSYLMVG-QPGGERNYYSICHGAGRIRSRSATKRLVTVDQFESSLRVGTADEIVV 433
Query: 369 SPKL---VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
+ ++ +++E+P++YK+V ++++ G++ K +P+A IKG+
Sbjct: 434 NQRMLESIIDESPQAYKDVDQIIESVVGAGLASVVAKCKPLASIKGV 480
>gi|402696901|gb|AFQ90639.1| chromosome 22 open reading frame 28, partial [Malaclemys terrapin]
Length = 236
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 86 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 145
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 146 QADPNKVSSRAKKRGLPQL 164
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 75/107 (70%), Gaps = 9/107 (8%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VD+IY+++AA
Sbjct: 131 WAEDKEHCEEYGRMLQADPNKVSSRAKKRGL-PQLGTLGAGNHYAEIQVVDDIYNEYAAR 189
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDR 203
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDR
Sbjct: 190 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDXIIVNDR 236
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 28 GMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHS 61
G GGFLP +KQI NVAALPGI+ RS+GLPDVHS
Sbjct: 2 GGAGGFLPAMKQIGNVAALPGIIHRSIGLPDVHS 35
>gi|256084900|ref|XP_002578663.1| hypothetical protein [Schistosoma mansoni]
Length = 1072
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q++FDHIPVGVGSKGIIPM+A+ LEEALEMGMDWSLR+GY+WAEDKEHCEEYGRML
Sbjct: 939 EKLTQTLFDHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGRML 998
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS RAKKRGLPQ+
Sbjct: 999 QADPSKVSSRAKKRGLPQL 1017
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L Q++FDHIPVGVGSKGIIPM+A+ LEEALEMGMDWSLR+GY+WAEDKEH E +
Sbjct: 937 VKEKLTQTLFDHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGR 996
Query: 474 SMFDHIPVGVGSKG 487
M P V S+
Sbjct: 997 -MLQADPSKVSSRA 1009
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 42/49 (85%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
TLGAGNHYAEIQ+V+EI+DK AA+KMGI + QV +MIH GSRG GHQV
Sbjct: 1019 TLGAGNHYAEIQVVEEIFDKHAATKMGINHLNQVVLMIHCGSRGMGHQV 1067
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 9/85 (10%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+V+EI+DK AA+
Sbjct: 984 WAEDKEHCEEYGRMLQADPSKVSSRAKKRGLP-QLGTLGAGNHYAEIQVVEEIFDKHAAT 1042
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQV 181
KMGI + QV +MIH GSRG GHQV
Sbjct: 1043 KMGINHLNQVVLMIHCGSRGMGHQV 1067
>gi|333372729|ref|ZP_08464653.1| RtcB protein [Desmospora sp. 8437]
gi|332971791|gb|EGK10739.1| RtcB protein [Desmospora sp. 8437]
Length = 482
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 154/284 (54%), Gaps = 13/284 (4%)
Query: 136 AGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
GNH+ E Q V+ K A G+ D GQ+ VMIHSGSR +G + + ++AM+
Sbjct: 205 GGNHFIEFQRVEISEQKRDVAEAWGLFD-GQIVVMIHSGSRAWGGMMGARYIKDFKRAMQ 263
Query: 195 RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVI-YDAFAKQFNTTPDDLDM 251
+ + T D L A I+S++ + + + + H+I Y +D +M
Sbjct: 264 KWGVGTPDPNLVYAPIDSDEGHRYINLMYSALNFAVANRHMIAYGVLQGLKEFAGNDAEM 323
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTM 311
V+YD+ HN A E H + + +LVHRKG+TRA PP H + Y+ TG P LI G+M
Sbjct: 324 PVLYDLMHNYALKEVH----RNQPMLVHRKGTTRALPPGHFMNAAPYRKTGHPALIPGSM 379
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE---SQGISIRVA 368
GT SY++ G EK ++ F S CHGAGR SR ++ + ++ + I +
Sbjct: 380 GTASYIMVG-EKAGEKNFHSICHGAGRLRSRRATKELVTVDAFSRSMKVGTDEEIVVNQN 438
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
+ + +++E+P++YK+V ++D+ G++K + +P+AVIKG+
Sbjct: 439 TLESILDESPQAYKDVDQIIDSVEGAGLAKVVARCKPLAVIKGV 482
>gi|402696903|gb|AFQ90640.1| chromosome 22 open reading frame 28, partial [Testudo hermanni]
Length = 236
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 86 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 145
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS R+KKRGLPQ+
Sbjct: 146 QADPNKVSSRSKKRGLPQL 164
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 75/107 (70%), Gaps = 9/107 (8%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V S RG Q+ T AGNHYAEIQ+VD+IY+++AA
Sbjct: 131 WAEDKEHCEEYGRMLQADPNKVSSRSKKRGL-PQLGTLGAGNHYAEIQVVDDIYNEYAAR 189
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDR 203
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDR
Sbjct: 190 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVSMEKAMKRDKIIVNDR 236
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 28 GMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHS 61
G GGFLP +KQI NVAALPGI+ RS+GLPDVHS
Sbjct: 2 GGAGGFLPAMKQIGNVAALPGIIHRSIGLPDVHS 35
>gi|418489529|ref|YP_007003344.1| hypothetical protein [Bacillus phage SP10]
gi|340545176|dbj|BAK52899.1| hypothetical protein [Bacillus phage SP10]
Length = 502
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 136 AGNHYAEIQ---IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA 192
GNH+ E+Q I DE ++ A K G+ D GQ+ M+HSGSRGFG + DA+ ++
Sbjct: 225 GGNHFIEVQSASIEDE--NRETAKKWGLFD-GQIVFMVHSGSRGFGARAGRDAVKAFKEE 281
Query: 193 MKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQF-NTTPDDL 249
M R +E+ D L A NS + + + + + H+I ++ F + + +
Sbjct: 282 MYRWGVESPDPNLVFAPFNSEVGQDYYTMLRASLNYAVANRHMIAYGVSQAFRDVMGEHV 341
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YD+ HN A+ E H + +VHRKG+TRA P H L P ++ TG P LI G
Sbjct: 342 ETELLYDLMHNYAQVEFH----RNSPHIVHRKGATRALPAGHHLNPKVFKETGHPALIPG 397
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL---ESQGISIR 366
+MGT SY++ G ++G++ F S CHGAGR SR +R + E L E I +
Sbjct: 398 SMGTSSYIMLGKDEGVK-NFYSICHGAGRVRSRRATREVVTVDEFAKSLRVGEDDEIVVN 456
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S + +++E P++YK+V ++D+ ++ +P+ V+KG
Sbjct: 457 QKSLETILDECPQAYKDVDQIIDSVVGAKLASVVAVCKPLVVVKG 501
>gi|289570803|ref|ZP_06451030.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544557|gb|EFD48205.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length = 165
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
TP DL +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P + GQP
Sbjct: 5 TPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAVGQP 60
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
VLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +GI
Sbjct: 61 VLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKRGII 118
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 119 VRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 165
>gi|76152960|gb|AAX24630.2| SJCHGC04301 protein [Schistosoma japonicum]
Length = 278
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q++FDHIPVGVGSKGIIPM+A+ LEEALEMGMDWSLR+GY+WAEDKEHCEEYGRML
Sbjct: 141 EKLTQTLFDHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS RAKKRGLPQ+
Sbjct: 201 QADPSKVSSRAKKRGLPQL 219
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 119/247 (48%), Gaps = 63/247 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNVEGVF+VND LEKLM +ELRN R G GGFLPG+KQI
Sbjct: 30 MNVEGVFYVNDFLEKLMFDELRNFTRSGDYGGFLPGMKQIGNVAALPGIVHRSVGLPDVH 89
Query: 42 --------NVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
N+AA PG VG + V + + L D + ++
Sbjct: 90 SGYGFAIGNMAAFDLANPKSVVSPGGVGFDINC-GVRLIRTNLTLKDVLPVKEKLTQTLF 148
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + Q ++E + WA K E+ G++ V
Sbjct: 149 DHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGRMLQADPSKVS 208
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+V+E + + AA+KMGI + Q+ +MIH GSRG GH
Sbjct: 209 SRAKKRGL-PQLGTLGAGNHYAEIQVVEEDFRQHAATKMGINHLNQIVLMIHCGSRGMGH 267
Query: 180 QVATDAL 186
QVATDAL
Sbjct: 268 QVATDAL 274
>gi|379724293|ref|YP_005316424.1| hypothetical protein PM3016_6662 [Paenibacillus mucilaginosus 3016]
gi|378572965|gb|AFC33275.1| hypothetical protein PM3016_6662 [Paenibacillus mucilaginosus 3016]
Length = 472
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 154/287 (53%), Gaps = 19/287 (6%)
Query: 136 AGNHYAEIQIVDEIYD-KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
+GNH+ EIQ ++ + K A+ G+ D GQV VMIHSGSR +G + + + AM+
Sbjct: 195 SGNHFCEIQYLEIAEEHKDTAAAWGLFD-GQVVVMIHSGSRAWGAMLGREYTQVIRGAMQ 253
Query: 195 RDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
+ D + A I S + + + A F + + + +AF + F
Sbjct: 254 SWGVTNPDPNVIYAPIGSTEGRTYLNLMNSALNFAVSNRHMIAFGVQEAFREVFGP---Q 310
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+++ V+YD+ HN A E H + + +LVHRKG+TRA PP H + Y TG P LI
Sbjct: 311 MELPVLYDLMHNYALKEFH----RNQGMLVHRKGATRALPPKHYMNTPAYMATGHPALIP 366
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGISI 365
G+MGT SY++ G ++G++ F S CHGAGR SR +++ + +++ L I +
Sbjct: 367 GSMGTSSYIMVGRDEGIK-NFYSICHGAGRLRSRRATKQAVTVDQFEQSLKVGTEDEILV 425
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
S +++E P++YK+V ++D+ G++ K RP+A IKG+
Sbjct: 426 NHRSLAAILDECPQAYKDVDQIIDSVVGAGLADVVAKCRPMAAIKGL 472
>gi|337751291|ref|YP_004645453.1| hypothetical protein KNP414_07071 [Paenibacillus mucilaginosus
KNP414]
gi|336302480|gb|AEI45583.1| hypothetical protein KNP414_07071 [Paenibacillus mucilaginosus
KNP414]
Length = 472
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 154/289 (53%), Gaps = 23/289 (7%)
Query: 136 AGNHYAEIQ---IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA 192
+GNH+ EIQ I +E D AA G+ D GQV VMIHSGSR +G + + + A
Sbjct: 195 SGNHFCEIQYLEIAEEHKDTAAA--WGLFD-GQVVVMIHSGSRAWGAMLGREYTQVIRGA 251
Query: 193 MKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTP 246
M+ + D + A I S + + + A F + + + +AF + F
Sbjct: 252 MQSWGVTNPDPNVIYAPIGSTEGRTYLNLMNSALNFAVSNRHMIAFGVQEAFREVFGP-- 309
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+++ V+YD+ HN A E H + + +LVHRKG+TRA PP H + Y TG P L
Sbjct: 310 -QMELPVLYDLMHNYALKEFH----RNQGMLVHRKGATRALPPKHYMNTPAYMATGHPAL 364
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGI 363
I G+MGT SY++ G ++G++ F S CHGAGR SR +++ + +++ L I
Sbjct: 365 IPGSMGTSSYIMVGRDEGIK-NFYSICHGAGRLRSRRATKQAVTVDQFEQSLKVGTEDEI 423
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
+ S +++E P++YK+V ++D+ G++ K RP+A IKG+
Sbjct: 424 LVNHRSLAAILDECPQAYKDVDQIIDSVVGAGLADVVAKCRPMAAIKGL 472
>gi|386727028|ref|YP_006193354.1| hypothetical protein B2K_33655 [Paenibacillus mucilaginosus K02]
gi|384094153|gb|AFH65589.1| hypothetical protein B2K_33655 [Paenibacillus mucilaginosus K02]
Length = 472
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 154/287 (53%), Gaps = 19/287 (6%)
Query: 136 AGNHYAEIQIVDEIYD-KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
+GNH+ EIQ ++ + K A+ G+ D GQV VMIHSGSR +G + + + AM+
Sbjct: 195 SGNHFCEIQYLEIAEEHKDTAAAWGLFD-GQVVVMIHSGSRAWGAMLGREYTQVIRGAMQ 253
Query: 195 RDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
+ D + A I S + + + A F + + + +AF + F
Sbjct: 254 SWGVTNPDPNVIYAPIGSTEGRTYLNLMNSALNFAVSNRHMIAFGVQEAFREVFGP---Q 310
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+++ V+YD+ HN A E H + + +LVHRKG+TRA PP H + Y TG P LI
Sbjct: 311 MELPVLYDLMHNYALKEFH----RNQGMLVHRKGATRALPPKHYMNTPAYMATGHPALIP 366
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGISI 365
G+MGT SY++ G ++G++ F S CHGAGR SR +++ + +++ L I +
Sbjct: 367 GSMGTSSYIMVGRDEGIK-NFYSICHGAGRLRSRRATKQAVTVDQFEQSLKVGTEDEILV 425
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
S +++E P++YK+V ++D+ G++ K RP+A +KG+
Sbjct: 426 NHRSLAAILDECPQAYKDVDQIIDSVVGAGLADVVAKCRPMAAVKGL 472
>gi|374604206|ref|ZP_09677173.1| hypothetical protein PDENDC454_14627 [Paenibacillus dendritiformis
C454]
gi|374390192|gb|EHQ61547.1| hypothetical protein PDENDC454_14627 [Paenibacillus dendritiformis
C454]
Length = 521
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 156/282 (55%), Gaps = 13/282 (4%)
Query: 137 GNHYAEIQIVD-EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+AEIQ V+ + ++ A G+ D GQV VMIHSGSR +G V+ +M + M+
Sbjct: 245 GNHFAEIQAVEIDESNRDTAEAWGLFD-GQVIVMIHSGSRAWGGAVSQQCSKEMAQWMRS 303
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAFAKQF-NTTPDDLDMH 252
+ T D +L A ++ + + + + ++ H++ + F + ++M
Sbjct: 304 AGVGTADPRLVFAPLSEPVAERYVHLMYSALNYAVVNRHLMAFGIREAFRDVLGSKVEMT 363
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+YD+ HN A E H +G++ + VHRKG+TRA PPHHP P Y TG P LI G+MG
Sbjct: 364 TLYDLMHNYAWEESH--NGRR--MFVHRKGATRALPPHHPDNPKPYAATGHPALIPGSMG 419
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
+ SY++ G + G + S CHGAGR SR+ +++ + E L+ V + ++
Sbjct: 420 SASYLMVGRDPGAANYY-SICHGAGRVRSRSATKQLVTVDEFAASLQVGTDDEVVVNQRM 478
Query: 373 ---VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++EAP++YK+V ++++ G++ + +P+A +KG
Sbjct: 479 LESIIDEAPQAYKDVEQIIESVVGAGLAGVVARCKPLATVKG 520
>gi|222530149|ref|YP_002574031.1| hypothetical protein Athe_2183 [Caldicellulosiruptor bescii DSM
6725]
gi|222456996|gb|ACM61258.1| protein of unknown function UPF0027 [Caldicellulosiruptor bescii
DSM 6725]
Length = 451
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 172/347 (49%), Gaps = 36/347 (10%)
Query: 87 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHS--------GSRGFG-HQVAT-- 135
G G +I + Y+++ + +D+ V+IH + G Q AT
Sbjct: 117 GVGKKNKKIALSKTKYEEYLQNTEIDKDISDKMVLIHEFDLDTIPDEAHEIGKEQFATLG 176
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG + + + MK
Sbjct: 177 GGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGAVIGDYYQKKFKDVMKS 234
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT-------PDD 248
I T D QL I++ K + K + IY + + +
Sbjct: 235 KGITTPDPQLTFLPIDNKVAKDYIKAMQSA-------AIYAKINRHYMSNFIISVLEKHS 287
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLI 307
+D V+YDV+HNIA E + LV RKG+TRA PP+H LIP + TG PV++
Sbjct: 288 IDAWVLYDVAHNIAYMERF----ANREKLVIRKGATRALPPNHYLIPNPKFAETGHPVIL 343
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGIS 364
G+MG+ SY++ G E + ++ + HGAGR LSR K+++ + ++ + L + +S I
Sbjct: 344 PGSMGSSSYLMRGIEDNII-SYHTVNHGAGRVLSRTKAKKTISIEEFSKALKQGQSGEIL 402
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + K ++E+P+SYK++ V+++ ++ K+ P+ VIKG
Sbjct: 403 INTKNLKDFLDESPQSYKDIELVINSVITSRLATPVAKMEPLGVIKG 449
>gi|334136072|ref|ZP_08509551.1| hypothetical protein HMPREF9413_4359 [Paenibacillus sp. HGF7]
gi|333606685|gb|EGL18020.1| hypothetical protein HMPREF9413_4359 [Paenibacillus sp. HGF7]
Length = 474
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 154/286 (53%), Gaps = 17/286 (5%)
Query: 137 GNHYAEIQIVD-EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+AEIQ V+ ++ A G+ D GQV VMIHSGSR +G V+ +++ M+
Sbjct: 196 GNHFAEIQSVEIAEENRGTAEAWGLFD-GQVIVMIHSGSRAWGGSVSQLCGSDIKRMMRA 254
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ + T D L A ++ + A + L + I +A F +
Sbjct: 255 EGMGTADPNLLFASLDHPLAVQYTDLMYSALNYAVVNRHLIAYAIREAGKDVFGS---KF 311
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
++ +YD+ HN A E+ +G++ + VHRKG+TRA P +HP P Y TG P LI G
Sbjct: 312 ELATLYDLMHNYAWEEDTEDEGRR--VFVHRKGATRALPANHPDNPEPYASTGHPALIPG 369
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE---SQGISIR 366
+MGT SY++ G++ G + + S CHGAGR SR+ ++R + E + + +
Sbjct: 370 SMGTSSYIMVGSDGG-KANYHSICHGAGRIRSRSATKRLVTVDEFSASMRVGTEDEVVVN 428
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
S + +++E+P++YK+V ++++ G++ K RP+AVIKG+
Sbjct: 429 QRSLESILDESPQAYKDVDQIIESVVGAGLASVVAKCRPMAVIKGV 474
>gi|312621558|ref|YP_004023171.1| hypothetical protein Calkro_0452 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202025|gb|ADQ45352.1| protein of unknown function UPF0027 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 451
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 170/347 (48%), Gaps = 36/347 (10%)
Query: 87 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF---------GHQVAT-- 135
G G +I + Y+++ + +D+ V+IH Q AT
Sbjct: 117 GVGKKNKKIALSKTKYEEYLQNTEIDKDISDKMVLIHEFDLDTIPDEAYEIGKEQFATLG 176
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG + + + MK
Sbjct: 177 GGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGAVIGDYYQKKFKDVMKS 234
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT-------PDD 248
I T D QL I++ K + K + IY + + +
Sbjct: 235 KGITTPDPQLTFLPIDNKVAKDYIKAMQSA-------AIYAKINRHYMSNFIISVLEKHS 287
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLI 307
+D V+YDV+HNIA E + LV RKG+TRA PP+H LIP + TG PV++
Sbjct: 288 IDAWVLYDVAHNIAYMERF----ANREKLVIRKGATRALPPNHYLIPNPKFAETGHPVIL 343
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGIS 364
G+MG+ SY++ G E + ++ + HGAGR LSR K+++ + ++ + L + +S I
Sbjct: 344 PGSMGSSSYLMRGIEDNII-SYHTVNHGAGRVLSRTKAKKTISIEEFSKALKQGQSGEIL 402
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + K ++E+P+SYK++ V+++ ++ K+ P+ VIKG
Sbjct: 403 INTKNLKDFLDESPQSYKDIELVINSVITSRLATPVAKMEPLGVIKG 449
>gi|398813268|ref|ZP_10571968.1| hypothetical protein PMI05_00362 [Brevibacillus sp. BC25]
gi|398039157|gb|EJL32300.1| hypothetical protein PMI05_00362 [Brevibacillus sp. BC25]
Length = 514
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 155/306 (50%), Gaps = 32/306 (10%)
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSR 175
S SRG+G Q+ T GNH+ EIQ +D EI W G+ D GQV +MIHSGSR
Sbjct: 224 SWSRGWG-QLGTLGGGNHFIEIQHIDIAEENREIAKAW-----GLFD-GQVVIMIHSGSR 276
Query: 176 GFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDL 229
+G + D ++AM + I + L A I S + + + A F T +
Sbjct: 277 AWGAMLGRDYTKSFKEAMYKWGIHNPEPSLVYAPIQSEEGQQYLNLMYSALNFAVTNRHM 336
Query: 230 DMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP 289
+ AF F + ++ V+YD+ HN A E H + +LVHRKG+T+A P
Sbjct: 337 IGFSVEQAFRDVFGS---EMRTPVLYDLMHNYALKEFH----RNTPMLVHRKGATKALPA 389
Query: 290 HHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL 349
H P Y+ TG P LI G+MGT SY++ G++ G + F S CHGAGR SR ++ +
Sbjct: 390 GHFQNPKAYRETGHPALIPGSMGTSSYIMVGSDAGAK-NFYSICHGAGRVRSRKATKELV 448
Query: 350 ---DYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPV 406
+++ + + I + S +++E P++YK+V ++D+ ++ K P+
Sbjct: 449 TIDQFEQAMRVGQEDEIMVNHRSLASILDECPQAYKDVDQIIDSVVGANLASVVAKCNPL 508
Query: 407 AVIKGI 412
IKG+
Sbjct: 509 IAIKGV 514
>gi|344997173|ref|YP_004799516.1| hypothetical protein Calla_1965 [Caldicellulosiruptor lactoaceticus
6A]
gi|343965392|gb|AEM74539.1| protein of unknown function UPF0027 [Caldicellulosiruptor
lactoaceticus 6A]
Length = 451
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 169/348 (48%), Gaps = 38/348 (10%)
Query: 87 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF---------GHQVAT-- 135
G G +I + Y+++ + +D+ V+IH Q AT
Sbjct: 117 GVGKKNKKIALSKTKYEEYLQNTEIDKDISDKMVLIHEFDLDTIPDEAYEIGKEQFATLG 176
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG + + + MK
Sbjct: 177 GGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGAVIGDYYQKKFKDVMKS 234
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT-------PDD 248
I T D QL I++ K + K + IY + + +
Sbjct: 235 KGITTPDPQLTFLPIDNKVAKDYIKAMQSA-------AIYAKINRHYMSNFIISVLEKHS 287
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLI 307
+D V+YDV+HNIA E + LV RKG+TRA PP+H LIP + TG PV++
Sbjct: 288 IDAWVLYDVAHNIAYMERF----ANREKLVIRKGATRALPPNHYLIPNPKFADTGHPVIL 343
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG----I 363
G+MG+ SY++ G E + ++ + HGAGR LSR K+++ + +E +K QG I
Sbjct: 344 PGSMGSSSYLMRGIEDNII-SYHTVNHGAGRVLSRTKAKKTISIEE-FSKALKQGQDGEI 401
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + K ++E+P+SYK++ V+++ ++ K+ P+ VIKG
Sbjct: 402 LINTKNLKDFLDESPQSYKDIEVVINSVITSRLALPVAKMEPLGVIKG 449
>gi|339236909|ref|XP_003380009.1| hypothetical protein Tsp_05733 [Trichinella spiralis]
gi|316977248|gb|EFV60375.1| hypothetical protein Tsp_05733 [Trichinella spiralis]
Length = 235
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 70/79 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L Q +FD IPVGVGS+GIIP+N RD EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 152 EQLTQCLFDFIPVGVGSRGIIPINGRDFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 211
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQV
Sbjct: 212 EADPAKVSTRAKKRGLPQV 230
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L Q +FD IPVGVGS+GIIP+N RD EE LEMGMDW+LREGY WAEDKEH E +
Sbjct: 150 VKEQLTQCLFDFIPVGVGSRGIIPINGRDFEECLEMGMDWTLREGYSWAEDKEHCEEYGR 209
Query: 474 SMFDHIPVGVGSK 486
M + P V ++
Sbjct: 210 -MLEADPAKVSTR 221
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V+G F+VN +LE LM EELR C G G F P VKQI NVA+LPG+V RS+GLPD+H
Sbjct: 30 MRVDGYFYVNKNLENLMFEELR-LCSKGGGGCFQPAVKQIGNVASLPGVVWRSIGLPDIH 88
Query: 61 S 61
+
Sbjct: 89 A 89
>gi|269859414|ref|XP_002649432.1| RTCB protein [Enterocytozoon bieneusi H348]
gi|220067195|gb|EED44662.1| RTCB protein [Enterocytozoon bieneusi H348]
Length = 455
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 153/276 (55%), Gaps = 38/276 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNHY EIQ VDE+++ ++ ++ + H GSR G ++ +A + +
Sbjct: 218 AGNHYLEIQRVDEVFEPYSEFEIDDIIIFI-----HCGSRSLGSAIS-EAYCEKISDLFI 271
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIY 255
D N + +N+ N AF + + +I + F ++F D + +I
Sbjct: 272 DFYSENGQNYF-ESMNAAANYAFVNR------EFISMIINNVFKEEF----ADFQLKIIT 320
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
D HNIAK E ++DGK+ L+HRKG++R++P + + +GG+MGTCS
Sbjct: 321 DTGHNIAKIE--IIDGKE--YLIHRKGASRSYPNEY-------------IAVGGSMGTCS 363
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVME 375
Y+L GT ++TF STCHG+GR + R ++ + +Y+ +++ +++ I ++ +S K ++E
Sbjct: 364 YILKGTP--CKDTFYSTCHGSGRLVPRREAHKIFNYKTMMDSMKN--IELKFSSKKKILE 419
Query: 376 EAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EAP YK++ VV+ C +GI+KK + +P+ VIKG
Sbjct: 420 EAPNCYKDIEIVVNHCEKMGINKKIARTKPLIVIKG 455
>gi|312792637|ref|YP_004025560.1| hypothetical protein Calkr_0396 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179777|gb|ADQ39947.1| protein of unknown function UPF0027 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 451
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 169/348 (48%), Gaps = 38/348 (10%)
Query: 87 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF---------GHQVAT-- 135
G G +I + Y+++ + +D+ V+IH Q AT
Sbjct: 117 GVGKKNKKIALSKAKYEEYLQNTEIDKDISDKMVLIHEFDLDTIPDEAYEIGKEQFATLG 176
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG + + + MK
Sbjct: 177 GGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGAVIGDYYQKKFKDVMKS 234
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT-------PDD 248
I T D QL I++ K + K + IY + + +
Sbjct: 235 KGITTPDPQLTFLPIDNKVAKDYIKAMQSA-------AIYAKINRHYMSNFIISVLEKHS 287
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLI 307
+D ++YDV+HNIA E + LV RKG+TRA PP+H LIP + TG PV++
Sbjct: 288 IDAWILYDVAHNIAYMERF----ANREKLVIRKGATRALPPNHYLIPNPKFADTGHPVIL 343
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG----I 363
G+MG+ SY++ G E + ++ + HGAGR LSR K+++ + +E +K QG I
Sbjct: 344 PGSMGSSSYLMRGIEDNVI-SYHTVNHGAGRVLSRTKAKKTISIEE-FSKALKQGQDGEI 401
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + K ++E+P+SYK++ V+++ ++ K+ P+ VIKG
Sbjct: 402 LINTKNLKDFLDESPQSYKDIEVVINSVITSRLALPVAKMEPLGVIKG 449
>gi|312126809|ref|YP_003991683.1| hypothetical protein Calhy_0573 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776828|gb|ADQ06314.1| protein of unknown function UPF0027 [Caldicellulosiruptor
hydrothermalis 108]
Length = 451
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 169/347 (48%), Gaps = 36/347 (10%)
Query: 87 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF---------GHQVAT-- 135
G G +I + Y+++ + +D+ V+IH Q AT
Sbjct: 117 GVGKKNKKIALSKAKYEEYLQNTEIDKDISDKMVLIHEFDLDTIPDEAYEIGKEQFATLG 176
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG + + + MK
Sbjct: 177 GGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGAVIGDYYQKKFKDVMKS 234
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT-------PDD 248
I T D QL I++ K + K + IY + + +
Sbjct: 235 KGITTPDPQLTFLPIDNKVAKDYIKAMQSA-------AIYAKINRHYMSNFIISVLEKHS 287
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLI 307
+D V+YDV+HNIA E + LV RKG+TRA PP+H LIP + TG PV++
Sbjct: 288 IDAWVLYDVAHNIAYMERF----ANREKLVIRKGATRALPPNHYLIPNPKFADTGHPVIL 343
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKLESQGIS 364
G+MG+ SY++ G + + ++ + HGAGR LSR K+++ + ++ + L + + I
Sbjct: 344 PGSMGSSSYLMRGIQDNII-SYHTVNHGAGRVLSRTKAKKTISIDEFSKALKQGQDGEIL 402
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
I + K ++E+P+SYK++ V+++ ++ K+ P+ VIKG
Sbjct: 403 INTKNLKDFLDESPQSYKDIELVINSVITSRLATPVAKMEPLGVIKG 449
>gi|312135864|ref|YP_004003202.1| hypothetical protein Calow_1873 [Caldicellulosiruptor owensensis
OL]
gi|311775915|gb|ADQ05402.1| protein of unknown function UPF0027 [Caldicellulosiruptor
owensensis OL]
Length = 451
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 152/294 (51%), Gaps = 29/294 (9%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q AT GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG + +
Sbjct: 171 QFATLGGGNHFIEFQKL-YVLDKDIAQKWGLFD-GQFVVMIHSGSRRFGAVIGDYYQKKF 228
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT---- 245
+ MK I T D QL I++ K + K + IY + + +
Sbjct: 229 KDVMKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA-------AIYAKINRHYMSNFIIS 281
Query: 246 ---PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLT 301
+D V+YDV+HNIA E + LV RKG+TRA PP H LIP + + T
Sbjct: 282 VLEKHSIDAWVLYDVAHNIAYMERF----ANREKLVIRKGATRALPPDHYLIPNLKFVDT 337
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
G PV++ G+MG+ SY++ G + + ++ + HGAGR LSR K+++ + +E +K Q
Sbjct: 338 GHPVILPGSMGSSSYLMRGIQDNII-SYHTVNHGAGRVLSRTKAKKTISIEE-FSKALRQ 395
Query: 362 G----ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
G I I + K ++E+P+SYK++ V+++ ++ K+ P+ VIKG
Sbjct: 396 GQDGEILINTRNLKDFLDESPQSYKDIEVVINSVITSRLALPVAKMEPLGVIKG 449
>gi|312087806|ref|XP_003145616.1| hypothetical protein LOAG_10041 [Loa loa]
Length = 218
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 69/78 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIP+ A EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGIIPIGALQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQ 546
AD +KVS RAKKRGLPQ
Sbjct: 201 QADAAKVSPRAKKRGLPQ 218
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 49/61 (80%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG F+VN LEKLM EELRNSCR +GGFLP V+Q+ NVAALP IV SVGLPD+H
Sbjct: 30 MNVEGRFYVNRALEKLMFEELRNSCRSDGIGGFLPAVRQVGNVAALPAIVNASVGLPDIH 89
Query: 61 S 61
S
Sbjct: 90 S 90
>gi|405956469|gb|EKC23057.1| UPF0027 protein C22orf28-like protein [Crassostrea gigas]
Length = 276
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 71/77 (92%)
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
LTGQPVLIGGTM TCSYVLTGT++GM ET+G+TCHGAGRALSRAK RRNLDY EVL+ LE
Sbjct: 14 LTGQPVLIGGTMETCSYVLTGTQQGMDETYGTTCHGAGRALSRAKCRRNLDYTEVLSALE 73
Query: 360 SQGISIRVASPKLVMEE 376
+GISIRVASPKLVMEE
Sbjct: 74 EKGISIRVASPKLVMEE 90
>gi|440492591|gb|ELQ75143.1| hypothetical protein THOM_1873 [Trachipleistophora hominis]
Length = 521
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 175/336 (52%), Gaps = 49/336 (14%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH-------QVATAG 137
+LGAGNH+ E+Q V E++D A G E + ++ MIH+GSRG G QVAT+
Sbjct: 226 SLGAGNHFLELQRVVEVHDNDA----GFE-IDELVFMIHTGSRGLGFEVCESASQVATSM 280
Query: 138 NHYAEIQIVDEIYD-KWAASKMGIEDVGQVCV-MIHSGSRGFGHQVATDALVQMEKAMKR 195
++ +I DE ++ + MG+ + + V ++S G + + L E
Sbjct: 281 RSISKSEIGDESHEIRQVKQAMGLYENDETTVSSVNSSQLG-----SFENLSYFEIHESE 335
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIY 255
D I ++ CA N AF + + + K +N + ++Y
Sbjct: 336 DYI----LEMGCA-----ANFAFCNRAIISKK-------VENVLKNWN-----IKCELVY 374
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
DV HN E +DGK+ L VHRKG+ RA PP+HP + + + GQP+ IGG+MGT S
Sbjct: 375 DVGHNSLHKEN--IDGKE--LFVHRKGAARALPPNHPELRSNRE-NGQPIPIGGSMGTSS 429
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVME 375
Y+L + +++ S+ HGAGR +SR+K+R+ L E L ++ + + S K +E
Sbjct: 430 YLLYAQD--TKKSLFSSPHGAGRRISRSKARK-LITMEQLKQMMGNTV-LMSKSEKGAIE 485
Query: 376 EAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EAP YK++ DVV+ +G+ KK KL P+AVIKG
Sbjct: 486 EAPIVYKDIEDVVNAAVELGLVKKVVKLEPLAVIKG 521
>gi|146296270|ref|YP_001180041.1| hypothetical protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409846|gb|ABP66850.1| protein of unknown function UPF0027 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 451
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 154/293 (52%), Gaps = 27/293 (9%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q AT GNH+ E Q + I DK A + G+ + GQ+ VMIHSGSR FG + +
Sbjct: 171 QFATLGGGNHFIEFQKLHVIDDK-VAKEWGLFE-GQLVVMIHSGSRRFGAVIGDYYQRKF 228
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQF--NTTPD 247
+ MK I T D QL I++ K + K + IY + + N
Sbjct: 229 KDVMKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA-------AIYAKVNRHYMSNFIIS 281
Query: 248 DLDMH-----VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLT 301
LD H V+YDV+HNIA E+ + LV RKG+TRA P +H LIP + T
Sbjct: 282 VLDEHGIDAWVLYDVAHNIAYMEKF----ANREKLVIRKGATRALPQNHYLIPNPKFLKT 337
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNL---DYQEVLNKL 358
G PV++ G+MG+ SY++ G E + ++ + HGAGR LSR K+++ + ++ + L +
Sbjct: 338 GHPVILPGSMGSSSYLMRGIEDNII-SYHTVNHGAGRVLSRNKAKKTISVEEFSKALRQG 396
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ I I + K ++E+P+SYK++ V+++ ++ K+ P+ VIKG
Sbjct: 397 QENEILINTKNLKDFLDESPQSYKDIDTVINSVITSKLAMPVAKMTPLGVIKG 449
>gi|226313516|ref|YP_002773410.1| hypothetical protein BBR47_39290 [Brevibacillus brevis NBRC 100599]
gi|226096464|dbj|BAH44906.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 478
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 38/309 (12%)
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSR 175
S SR +G Q+ T GNH+ EIQ ++ EI W G+ D GQV +MIHSGSR
Sbjct: 188 SWSRAWG-QLGTLGGGNHFIEIQHIEIAEENREIAKAW-----GLFD-GQVVIMIHSGSR 240
Query: 176 GFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDL 229
+G + D ++ M + I + L A I S + + + A F T +
Sbjct: 241 AWGAMLGRDYTKSFKEVMYKWGIHNPEPSLVYAPIQSEEGQQYLNLMYSALNFAVTNRHM 300
Query: 230 DMHVIYDAFAKQF---NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRA 286
+ AF F TP V+YD+ HN A E H + +LVHRKG+T+A
Sbjct: 301 IGFSVEQAFRDIFGRETRTP------VLYDLMHNYALKESH----RNTPVLVHRKGATKA 350
Query: 287 FPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSR 346
P H P Y+ TG P LI G+MGT SY++ G+E G + F S CHGAGR SR ++
Sbjct: 351 LPAGHFQNPKAYRKTGHPALIPGSMGTSSYIMVGSEAGAK-NFYSICHGAGRVRSRKATK 409
Query: 347 RNL---DYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
+ +++ + + I + S +++E P++YK+V ++D+ ++ K
Sbjct: 410 ELVTIDQFEQAMRVGQEDEIMVNHRSLASILDECPQAYKDVDQIIDSVVGANLASVVAKC 469
Query: 404 RPVAVIKGI 412
P+ IKG+
Sbjct: 470 NPLIAIKGV 478
>gi|310830881|ref|YP_003965982.1| hypothetical protein PPSC2_p0525 [Paenibacillus polymyxa SC2]
gi|309250348|gb|ADO59914.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 473
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 150/291 (51%), Gaps = 29/291 (9%)
Query: 137 GNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME 190
GNH+ E+Q V+ E+ +KW G+ D GQV VMIHSGSR +G + + +
Sbjct: 197 GNHFIELQHVEIDEANHEVAEKW-----GLFD-GQVIVMIHSGSRAWGAMLGREYTKLFK 250
Query: 191 KAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNT 244
+AM+ I D L A + S + + + A F + + + + F F
Sbjct: 251 EAMEMWGISNPDPALMYAPMKSIEGQTYLNLMYSALNFAVSNRHMIAYGVQQGFRDIFGA 310
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
+ +M V+YD+ HN A E H + + +LVHRKG+TRA P H L Y+ TG P
Sbjct: 311 ---EFEMPVLYDLMHNYALKEFH----RNQAMLVHRKGATRALPKGHFLNVPAYKETGHP 363
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL---ESQ 361
LI G+M T SY++ G + G Q+ F S CHGAGR SR ++ + +V + E
Sbjct: 364 ALIPGSMATASYIMLGQDAG-QKNFYSICHGAGRVRSRRATKELITIDQVAQSMRVGEDD 422
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
I + + + +++E+ +YK+V ++D+ G++ K P+AVIKG+
Sbjct: 423 EILVNHRTLEGLVDESKYAYKDVDQIIDSIVESGLANVVAKCNPLAVIKGM 473
>gi|429963953|gb|ELA45951.1| hypothetical protein VCUG_02559 [Vavraia culicis 'floridensis']
Length = 514
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 161/335 (48%), Gaps = 55/335 (16%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYA--- 141
+LGAGNH+ EIQ V E+YD A V ++ MIH+GSRG G +V + A
Sbjct: 227 SLGAGNHFLEIQRVAEVYDNDADFA-----VDELVFMIHTGSRGLGFEVCESATQVAAST 281
Query: 142 ----EIQIVDEIYDKWAASK-MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
E +I +E +D A K +G+ F + D L++M
Sbjct: 282 RCITESEIGNESHDIQAVRKSIGLCSASISASGSSENLSYFEAHESEDYLLEM------- 334
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
CA N AF + + + Q+N + ++YD
Sbjct: 335 ---------GCA-----ANYAFCNRAIISKK-------VEEVLGQWN-----VKCELVYD 368
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V HN E +DG++ VHRKG+ RA PP+HP + + + GQP+ IGG+MGT SY
Sbjct: 369 VGHNSLIREN--IDGRE--CFVHRKGAARALPPNHPELRCNRE-KGQPIPIGGSMGTSSY 423
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEE 376
+L + ++ S+ HGAGR +SR K+R+ + +++ + I + S K +EE
Sbjct: 424 LLYAQDTA--KSLFSSPHGAGRKISRHKARKLITMEQLRQVMGD--IILMSKSEKGAIEE 479
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
AP YK++ DVVD +G+ KK KL P+AVIKG
Sbjct: 480 APMVYKDIDDVVDAAVELGLVKKAVKLEPLAVIKG 514
>gi|405946452|gb|EKC17641.1| UPF0027 protein C22orf28-like protein [Crassostrea gigas]
Length = 149
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 65/76 (85%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH AEIQ+VD+IY+K+AA KMGIE GQVCVMIH GSR GHQVATDALV MEKAMKRD
Sbjct: 39 GNHTAEIQVVDKIYNKFAAKKMGIEYTGQVCVMIHCGSRRLGHQVATDALVAMEKAMKRD 98
Query: 197 NIETNDRQLACARINS 212
NI NDRQLACA+I S
Sbjct: 99 NINVNDRQLACAKIYS 114
>gi|387593281|gb|EIJ88305.1| hypothetical protein NEQG_01749 [Nematocida parisii ERTm3]
gi|387596007|gb|EIJ93629.1| hypothetical protein NEPG_01201 [Nematocida parisii ERTm1]
Length = 535
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 153/321 (47%), Gaps = 55/321 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNHY EIQ+V+EI+D ++G+E + VC+ +H+GSR G +D L +K M+ +
Sbjct: 224 GNHYVEIQVVNEIFDDKICKQLGLE-LDMVCISVHTGSRSVGGGAVSDLL---KKCMRCE 279
Query: 197 NIETNDRQL-----------------ACAR--------INSNKNKAFAKQFNTTPDDLDM 231
+ +D ++ AC+ I +A + F + D +
Sbjct: 280 SKYVHDEKVEIPINDPMAENYFEMVNACSNFAFCNRVMIGREVEEALKQTFEQSMGDTEE 339
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP--- 288
+ D + + + M VI D +HNI + EE DGK+ +L RKGST+ P
Sbjct: 340 TEVKDTRGVRNIKSGSSITMRVISDSAHNIVRLEER--DGKK--VLRIRKGSTQILPYGD 395
Query: 289 ---------------PHHPLIPVDY-QLTGQP--VLIGGTMGTCSYVLTGTEKGMQETFG 330
+P D + T P V +GG+M T SYVL+ + G +
Sbjct: 396 KERSIARDINKTSLYNSESSMPDDSNKCTIYPHVVSVGGSMSTGSYVLSAGKNGESVDY- 454
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
TCHG+GR L R + + + + + N+LES +S+RV + + EE+ ++YK + VVD
Sbjct: 455 VTCHGSGRILRRKDANKEITQEGLKNELESADVSMRVKNINKIREESSKAYKCIKKVVDY 514
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
C G+S K +L P+ IKG
Sbjct: 515 CEESGLSNKVCRLAPIGGIKG 535
>gi|115372288|ref|ZP_01459598.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|310817389|ref|YP_003949747.1| hypothetical protein STAUR_0111 [Stigmatella aurantiaca DW4/3-1]
gi|115370753|gb|EAU69678.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|309390461|gb|ADO67920.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 450
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 141/280 (50%), Gaps = 37/280 (13%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM--- 193
GNH+ E+Q+ +E G+V VM+H+GSRGFG +A V+ +A+
Sbjct: 201 GNHFTEMQVDEE---------------GRVWVMLHTGSRGFGWNIAKHFFVEGARALGLS 245
Query: 194 -KRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ D + R N + A F + + A + F T D
Sbjct: 246 SRSEDFIWLDAETKLGREYWNLHN-MAANFAVANRLIIGEAVCAALEEVFGGTAD----- 299
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP-LIPVDYQLTGQPVLIGGTM 311
+ Y++SHN+ + E GK V RKG+TRAFP HP L ++ TG P+LI G+M
Sbjct: 300 IYYEISHNLIQKEA----GK----FVARKGATRAFPKGHPSLRKTSWEHTGHPILIPGSM 351
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
T S +L E+G +++ S HG+GR LSR ++RR L +E ++ GI + +
Sbjct: 352 ETGSAILF-AEEGAEKSIYSVNHGSGRRLSRGEARRVLRQEETDQRMAQAGILLNTRTTP 410
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L +E+ YKN+ DV++T G+++ +L PVA IKG
Sbjct: 411 L--DESGPCYKNLDDVLETVEMAGLARVAHRLTPVACIKG 448
>gi|123392138|ref|XP_001300198.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881197|gb|EAX87268.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 285
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 113/201 (56%), Gaps = 17/201 (8%)
Query: 126 SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
+RG G Q+ T AGNHY E+Q VD+I D+ A M + + GQV VMIH+GSRG GHQVA
Sbjct: 87 ARGKG-QLGTVGAGNHYIEVQRVDKILDEEKARVMDLHE-GQVVVMIHTGSRGLGHQVAD 144
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA 237
+ + + ++++ D+QLA +S + + + A F + MH + A
Sbjct: 145 ENMKVCSEKFVKESLP--DKQLAAPSFHSEEGQKYLRAMYAAANFVWCNRQVIMHNVRRA 202
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
F+ F L+ H++YDV+HNIAK E+H +DG +K +VHRKG+TRAF P I
Sbjct: 203 FSDVFKDRK--LETHLVYDVAHNIAKVEKHNIDGVEKEYIVHRKGATRAFGPGRQEISEK 260
Query: 298 YQLTGQP---VLIGGTMGTCS 315
Y+ GQP I G CS
Sbjct: 261 YRSIGQPNPHWWINGNSIICS 281
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
W E + + L + ++++IPVGVG K + L + + G W+L G+ ED ++
Sbjct: 7 WEEVEPVKKELVEKLYEYIPVGVGGKLDGVCDRDHLRDVMLKGAGWALENGFAVQEDIDN 66
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
CEE G + ADPS +S R RG Q+
Sbjct: 67 CEENGCLKGADPSLISDRTIARGKGQL 93
>gi|312144051|ref|YP_003995497.1| hypothetical protein Halsa_1722 [Halanaerobium hydrogeniformans]
gi|311904702|gb|ADQ15143.1| protein of unknown function UPF0027 [Halanaerobium
hydrogeniformans]
Length = 439
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 50/298 (16%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
R F +Q+AT +GNH+ E+Q V E+Y A G+ + GQ+ MIH+GSR FGHQ+A
Sbjct: 179 RAF-NQLATLGSGNHFLELQRVKEVY----AEDCGLFE-GQLVFMIHTGSRAFGHQIAK- 231
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDM----------HVI 234
K+ + T + LA +I+S + K + H+I
Sbjct: 232 ---HYSNIAKKSGVATPTKNLASFKIDSEGGINYKKAMAAAANFAFANRHLIAHKLRHII 288
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+ + K+ + YD++HNIAK E + G++ +LVHRKG+ + LI
Sbjct: 289 KEFYPKE--------SFDLFYDITHNIAKKE--LYQGEE--VLVHRKGACKLAKEDIALI 336
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTG-TEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
P G+MGT SY++ K + ++ ST HGAGR +SR+++++++ ++
Sbjct: 337 P-------------GSMGTFSYLIKAQNSKANELSYYSTAHGAGRKMSRSQAKKDISQKD 383
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
N + + + + +S +++E+P +YK++ V+D ++K K P+AVIKG
Sbjct: 384 HFNSMGT--VKLFHSSRDSILDESPLAYKDINSVIDALEKTDLAKAAAKFEPLAVIKG 439
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 8/59 (13%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEI 143
TLG+GNH+ E+Q V E+Y A G+ + GQ+ MIH+GSR FGHQ+A HY+ I
Sbjct: 186 TLGSGNHFLELQRVKEVY----AEDCGLFE-GQLVFMIHTGSRAFGHQIA---KHYSNI 236
>gi|417305358|ref|ZP_12092329.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
gi|327538367|gb|EGF25040.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
Length = 510
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 24/286 (8%)
Query: 137 GNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E ++V D + A G+ D G V + H GSRGFGH +A+ ++
Sbjct: 230 GNHFGECEVVEVGDNDRAREVAQTFGLRD-GNVAFLSHCGSRGFGHNLASGQFRTLQDKF 288
Query: 194 KRDNIE--TNDRQLACARINSNK------NKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
R I DRQL A + S++ + A F T L ++ +AF + T
Sbjct: 289 DRWGIPLPAGDRQLVYAPLGSDEANDYLDDMALGANFATVNHLLINALVLEAFQEVIPGT 348
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
+L +Y +SHNIA+ E +VD + VHRKG+TRA P HH L + +G P
Sbjct: 349 RGNL----VYFISHNIARKE--IVD--NQPAWVHRKGATRAMPGGHHSLANTPFAKSGHP 400
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
+L+ G S V+ E G E+ S HGAGR L R ++R LD V ++ +S I
Sbjct: 401 ILLPGNPRDGSAVMVADE-GASESCYSVNHGAGRTLGRRHAKRVLDQATVDSEFDSNDIL 459
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
K ++EAP +YK+ +V+ + + G++ + +L+ VIK
Sbjct: 460 SNCR--KYPIDEAPAAYKDFNEVLRSVKSAGLASEVARLKARFVIK 503
>gi|171915919|ref|ZP_02931389.1| hypothetical protein VspiD_32150 [Verrucomicrobium spinosum DSM
4136]
Length = 501
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 141/287 (49%), Gaps = 25/287 (8%)
Query: 137 GNHYAEIQIVD----EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA 192
GNH+ E + V+ + AA G++D G V + H GSRGFGH +A+ +E
Sbjct: 220 GNHFGECERVELAEGSPEARRAAEAFGLKD-GHVAFLSHCGSRGFGHDLASRQFKSLEAF 278
Query: 193 MKRDNIE--TNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNT 244
++ ++ DRQL A + S + A+ F T L ++ +AF +
Sbjct: 279 FRQWSLPFPAEDRQLVYAPLGSPEANAYLDDMSLGANFATVNHLLINSLVLEAFQEVLPG 338
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP-LIPVDYQLTGQ 303
T +L +Y +SHNIA+ E +VDG+ VHRKG+TRAFP HP L + TG
Sbjct: 339 TQGEL----VYFISHNIAR--EELVDGRNT--WVHRKGATRAFPALHPGLKETPFHETGH 390
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
P+L+ G S V+ ++ + S HGAGR + R ++ R LD + V + I
Sbjct: 391 PILLPGNPRDGSVVMVAKPGAVKSCY-SVNHGAGRCMGRKQAGRVLDQKLVDADFVTHDI 449
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ ++EAP +YK+ +V+ + G+++ KL+ VIK
Sbjct: 450 LTNCRT--YPIDEAPNAYKDFNEVLRSVETAGLAETVCKLKARFVIK 494
>gi|290559082|gb|EFD92453.1| protein of unknown function UPF0027 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 134
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 89/134 (66%)
Query: 278 VHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAG 337
+H KG+TR F P + + + TGQPV+IGG+M T SY+ GT+K E+FG+T HG+G
Sbjct: 1 MHSKGATRNFGPKYKELNGVLKSTGQPVIIGGSMETGSYLCVGTKKSELESFGTTLHGSG 60
Query: 338 RALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGIS 397
R +SR K+R ++ ++++N+LE +GI ++ S ++EE +YK++ VV++ H GIS
Sbjct: 61 RTMSRVKAREVIEGKKLVNELEKKGIYVKSNSLNGLIEEGGAAYKDIDQVVNSMHDAGIS 120
Query: 398 KKTFKLRPVAVIKG 411
K KL P+ IKG
Sbjct: 121 LKVLKLVPIGNIKG 134
>gi|440716071|ref|ZP_20896590.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
gi|436439017|gb|ELP32516.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
Length = 510
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 24/286 (8%)
Query: 137 GNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E ++V D + A G+ D G V + H GSRGFGH +A+ ++
Sbjct: 230 GNHFGECEVVEVGDNDRAREVAQTFGLRD-GNVAFLSHCGSRGFGHNLASGQFRTLQDKF 288
Query: 194 KRDNI--ETNDRQLACARINSNK------NKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
R I DRQL A + S++ + A F T L ++ +AF + T
Sbjct: 289 DRWGIPLPAGDRQLVYAPLGSDEANDYLDDMALGANFATVNHLLINALVLEAFQEVIPGT 348
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP-PHHPLIPVDYQLTGQP 304
+L +Y +SHNIA+ E +VD + VHRKG+TRA P HH L + +G P
Sbjct: 349 RGNL----VYFISHNIARKE--IVD--NQPAWVHRKGATRAMPGGHHALANTPFAKSGHP 400
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
+L+ G S V+ E G + S HGAGR L R ++R LD V ++ +S I
Sbjct: 401 ILLPGNPRDGSAVMVADE-GASASCYSVNHGAGRTLGRRHAKRVLDQATVDSEFDSNDIL 459
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
K ++EAP +YK+ +V+ + + G++ + +L+ VIK
Sbjct: 460 SNCR--KYPIDEAPAAYKDFNEVLRSVKSAGLASEVARLKARFVIK 503
>gi|444918192|ref|ZP_21238270.1| Protein RtcB [Cystobacter fuscus DSM 2262]
gi|444710088|gb|ELW51077.1| Protein RtcB [Cystobacter fuscus DSM 2262]
Length = 450
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 133/279 (47%), Gaps = 35/279 (12%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q+ ++ G+V VM+H+GSRGFG +A V+ A+
Sbjct: 201 GNHFTEMQV---------------DESGRVWVMLHTGSRGFGWNIAKHFFVEGAAALGLG 245
Query: 197 NIETNDRQL-ACARINSN--KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
+ L A +R+ + A F L + A F T +
Sbjct: 246 KHSEDFIWLDASSRLGKDYWNLHNMAANFAVANRLLIGEAVCGALEDVFGGTAS-----I 300
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP-LIPVDYQLTGQPVLIGGTMG 312
Y++SHN+ + K+ V RKG+TRAFP HP L + +G P+LI G+M
Sbjct: 301 YYEISHNLIQ--------KESGRFVARKGATRAFPGGHPALTGTPWAKSGHPILIPGSME 352
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T S +L EKG ++ S HGAGR LSR ++RR LD E ++ I + + L
Sbjct: 353 TGSAILF-AEKGASQSIYSVNHGAGRRLSRGEARRVLDQDETDLRMMEADILLNTRTTPL 411
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+E+ YKN+ DV++T G++ +L+PVA IKG
Sbjct: 412 --DESGPCYKNLDDVLNTVEMAGLATVARRLKPVACIKG 448
>gi|405371177|ref|ZP_11026888.1| Protein RtcB [Chondromyces apiculatus DSM 436]
gi|397089162|gb|EJJ20098.1| Protein RtcB [Myxococcus sp. (contaminant ex DSM 436)]
Length = 450
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 39/281 (13%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME-----K 191
GNH+ E+Q+ + G+V VM+H+GSRGFG +A V+ K
Sbjct: 201 GNHFTEMQVDQD---------------GRVWVMLHTGSRGFGWNIAKHFFVEGAAQLGLK 245
Query: 192 AMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
+ D++ D + R N + A F + + DA F T
Sbjct: 246 SRSEDHVWL-DAESPLGRDYWNLHN-MAANFAVANRLIIGEAVCDALEAVFGGT-----A 298
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLIGGT 310
HV Y++SHN+ + K+ V RKG+TRAFP HP + ++ +G P+LI G+
Sbjct: 299 HVYYEISHNLIQ--------KEAGRFVARKGATRAFPGGHPALKGTPWEKSGHPILIPGS 350
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
M T S +L E G +++ S HG+GR +SR ++RR L ++ GI +
Sbjct: 351 METGSAILF-AEPGAEKSIYSVNHGSGRRMSRGEARRVLKQDATDQRMAEAGILLNTRQT 409
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L +E+ YKN+ DV++T G+++ +L+PVA IKG
Sbjct: 410 PL--DESGPCYKNLDDVLETVEMAGLARVAHRLKPVACIKG 448
>gi|449135861|ref|ZP_21771290.1| protein belonging to Uncharacterized protein family UPF0027
[Rhodopirellula europaea 6C]
gi|448885476|gb|EMB15918.1| protein belonging to Uncharacterized protein family UPF0027
[Rhodopirellula europaea 6C]
Length = 507
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 149/288 (51%), Gaps = 28/288 (9%)
Query: 137 GNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E ++V ++ Y + + G+ D G V + H GSRGFGH +A M+
Sbjct: 227 GNHFGEAEVVSLSEKQYFRSIGEQWGLRD-GCVAFLSHCGSRGFGHDLAMSQFRAMKAHF 285
Query: 194 KRDNIE--TNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + + D QL A +S + + A F T L ++ ++F + F
Sbjct: 286 QSNGLAFPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVNHMLINQLVLESFREVFPGI 345
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
+L +Y +SHNIA+ E VDG+ + VHRKG+TRA P H L+ +++ TG P
Sbjct: 346 RGEL----VYFISHNIARQEP--VDGRLQ--WVHRKGATRALPKGHEQLVGTEFEATGHP 397
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL--NKLESQG 362
+L+ G S ++ ++G + S HGAGR LSR K+++NL+ Q V+ N L+
Sbjct: 398 ILLPGNPRDGSSIMV-AQRGAAASAFSVNHGAGRQLSRTKAKKNLN-QTVIDQNLLDHDV 455
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
IS P+ +EAP++YK+ +V+ + G++ + +L+ V+K
Sbjct: 456 ISNCRVYPR---DEAPDAYKDFAEVLKSVTKAGLADEVARLKAKFVLK 500
>gi|32475849|ref|NP_868843.1| hypothetical protein RB9360 [Rhodopirellula baltica SH 1]
gi|32446392|emb|CAD76220.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 510
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 140/286 (48%), Gaps = 24/286 (8%)
Query: 137 GNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E ++V D + A G+ D G V + H GSRGFGH +A+ ++
Sbjct: 230 GNHFGECEVVEVGDNDRAREVAQTFGLRD-GNVAFLSHCGSRGFGHNLASGQFRTLQDKF 288
Query: 194 KRDNI--ETNDRQLACARINSNK------NKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
R I DRQL A + +++ + A F T L ++ +AF + T
Sbjct: 289 DRWGIPLPAGDRQLVYAPLGTDEANDYLDDMALGANFATVNHLLINALVLEAFQEVIPGT 348
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP-PHHPLIPVDYQLTGQP 304
+L +Y +SHNIA+ E +VD + VHRKG+TRA P HH L + +G P
Sbjct: 349 RGNL----VYFISHNIARKE--IVD--NQPAWVHRKGATRAMPGGHHSLANTPFAKSGHP 400
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
+L+ G S V+ E G + S HGAGR L R ++R LD V ++ +S I
Sbjct: 401 ILLPGNPRDGSAVMVADE-GASASCYSVNHGAGRTLGRRHAKRVLDQATVDSEFDSNDIL 459
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
K ++EAP +YK+ +V+ + + G++ + +L+ VIK
Sbjct: 460 SNCR--KYPIDEAPAAYKDFNEVLRSVKSAGLASEVARLKARFVIK 503
>gi|421612911|ref|ZP_16054005.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
gi|408496221|gb|EKK00786.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
Length = 510
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 24/286 (8%)
Query: 137 GNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E ++V D + A G+ D G V + H GSRGFGH +A+ ++
Sbjct: 230 GNHFGECEVVEVGDNDRAREVAQTFGLLD-GNVAFLSHCGSRGFGHNLASGQFRTLQDKF 288
Query: 194 KRDNI--ETNDRQLACARINSNK------NKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
R I DRQL A + S++ + A F T L ++ +AF + T
Sbjct: 289 DRWGIPLPAGDRQLVYAPLGSDEANDYLDDMALGANFATVNHLLINALVLEAFQEVIPGT 348
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP-PHHPLIPVDYQLTGQP 304
+L +Y +SHNIA+ E +VD + VHRKG+TRA P HH L + +G P
Sbjct: 349 RGNL----VYFISHNIARKE--IVD--NQPAWVHRKGATRAMPGGHHSLANTPFAKSGHP 400
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
+L+ G S V+ E G + S HGAGR L R ++R LD V ++ +S I
Sbjct: 401 ILLPGNPRDGSAVMVADE-GASASCYSVNHGAGRTLGRRHAKRVLDQATVDSEFDSNDIL 459
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
K ++EAP +YK+ +V+ + + G++ + +L+ VIK
Sbjct: 460 SNCR--KYPIDEAPAAYKDFNEVLRSVKSAGLASEVARLKARFVIK 503
>gi|442317077|ref|YP_007357098.1| hypothetical protein MYSTI_00055 [Myxococcus stipitatus DSM 14675]
gi|441484719|gb|AGC41414.1| hypothetical protein MYSTI_00055 [Myxococcus stipitatus DSM 14675]
Length = 450
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 133/280 (47%), Gaps = 37/280 (13%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV----QMEKA 192
GNH+ E+Q+ +E G+V VM+H+GSRGFG +A V Q+
Sbjct: 201 GNHFTEMQVDEE---------------GRVWVMLHTGSRGFGWNIAKHFFVEGAAQLGLK 245
Query: 193 MKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ D R N + A F + + A F T
Sbjct: 246 SRSEDFVWLDADSPLGREYWNLHN-MAANFAVANRLIIGEAVCAALEDVFGGTAS----- 299
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP-LIPVDYQLTGQPVLIGGTM 311
V Y++SHN+ + E GK V RKG+TRAFP HP L ++ TG P+LI G+M
Sbjct: 300 VYYEISHNLIQKEA----GK----FVARKGATRAFPAGHPSLKKTTWEGTGHPILIPGSM 351
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
T S +L E+G ++ S HG+GR LSR ++RR L ++ GI +
Sbjct: 352 ETGSAILF-AEEGASKSIYSVNHGSGRRLSRGEARRVLKQDVTDARMAESGILLNTRHTP 410
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L +E+ YKN+ DV++T G++K +L+PVA IKG
Sbjct: 411 L--DESGPCYKNLEDVLETVEMAGLAKVARRLKPVACIKG 448
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 16/56 (28%)
Query: 80 KRSPL-TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 134
KR L +LG GNH+ E+Q+ +E G+V VM+H+GSRGFG +A
Sbjct: 191 KRGQLGSLGGGNHFTEMQVDEE---------------GRVWVMLHTGSRGFGWNIA 231
>gi|417305712|ref|ZP_12092661.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
gi|327537981|gb|EGF24676.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
Length = 526
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 147/288 (51%), Gaps = 28/288 (9%)
Query: 137 GNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E +IV ++ Y + + G+ D G V + H GSRGFGH +A M+
Sbjct: 246 GNHFGEAEIVSLSNKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDLAMSQFRAMKTHF 304
Query: 194 KRDNIE--TNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + D QL A +S + + A F T L ++ ++F + F
Sbjct: 305 QSSGLAFPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVNHLLINQLVLESFREVFPGI 364
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
+L IY +SHNIA+ E VDG+ + VHRKG+TRA P H L +++ TG P
Sbjct: 365 RGEL----IYFISHNIARQEP--VDGRLQ--WVHRKGATRALPKGHEQLAGTEFESTGHP 416
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL--NKLESQG 362
+L+ G S ++ ++G + S HGAGR LSR K+++NL+ Q V+ N L+
Sbjct: 417 ILLPGNPRDGSSIMV-AQRGASVSAFSVNHGAGRQLSRTKAKKNLN-QTVIDQNLLDHDV 474
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
IS P+ +EAP++YK+ +V+ + G++ + +L+ V+K
Sbjct: 475 ISNCRVYPR---DEAPDAYKDFAEVLKSVTKAGLADEVARLKAKFVLK 519
>gi|338531340|ref|YP_004664674.1| hypothetical protein LILAB_08425 [Myxococcus fulvus HW-1]
gi|337257436|gb|AEI63596.1| hypothetical protein LILAB_08425 [Myxococcus fulvus HW-1]
Length = 450
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 39/281 (13%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME-----K 191
GNH+ E+Q+ + G+V VM+H+GSRGFG +A V+ K
Sbjct: 201 GNHFTEMQVDQD---------------GRVWVMLHTGSRGFGWNIAKHFFVEGAAQLGLK 245
Query: 192 AMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
+ D++ D + R N + A F + + A F T
Sbjct: 246 SRSEDHVWL-DAESPLGRDYWNLHN-MAANFAVANRLIIGEAVCAALEDVFGGTAS---- 299
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLIGGT 310
V Y++SHN+ + K+ V RKG+TRAFP HP + ++ TG P+LI G+
Sbjct: 300 -VYYEISHNLIQ--------KEAGRFVARKGATRAFPGGHPALKGTPWEKTGHPILIPGS 350
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
M T S +L E+G Q++ S HG+GR LSR +++R L ++ GI +
Sbjct: 351 METGSAILF-AEEGAQKSIYSVNHGSGRRLSRGEAKRVLKQDATDKRMAEAGILLNTRQT 409
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L +E+ YKN+ DV++T G+++ ++L+PVA IKG
Sbjct: 410 PL--DESGPCYKNLDDVLETVEMAGLARVAYRLKPVACIKG 448
>gi|283778155|ref|YP_003368910.1| hypothetical protein Psta_0360 [Pirellula staleyi DSM 6068]
gi|283436608|gb|ADB15050.1| protein of unknown function UPF0027 [Pirellula staleyi DSM 6068]
Length = 498
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 26/287 (9%)
Query: 137 GNHYAE---IQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E +QI + + A G+ D G V + H GSRG GH +A ++
Sbjct: 218 GNHFGECEVVQIENNARARSVADTFGLRD-GCVAFLSHCGSRGIGHNLAMHQFKTLQSKF 276
Query: 194 KRDNIET--NDRQLACARINSNKNKAFAKQFN-----TTPDDLDMHV-IYDAFAKQFNTT 245
+ +I NDR+L A + S++ A+ + T + L +++ + +AF + F
Sbjct: 277 AKWDIPLPGNDRELVYAPLGSDEGNAYIDDMSLGANFATLNHLVINLQVLEAFQQVFPGV 336
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
DL +Y +SHNIA+ E +V+ ++ VHRKG+TRAFP HH L Y+ TG P
Sbjct: 337 KGDL----VYFISHNIAR--EEVVENRKA--WVHRKGATRAFPAGHHALKGTPYENTGHP 388
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
+L+ G S V+ F S HGAGR L R + R LD Q + + I
Sbjct: 389 ILLPGNPQAGSAVMVADAGAALSCF-SVNHGAGRVLGRKAAIRALDQQSIDKSFDDHDIL 447
Query: 365 IRVAS-PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
PK +EAP +YK+ +V+ + G++ + +L+ VIK
Sbjct: 448 TNCRQYPK---DEAPAAYKDFEEVLRSVKLAGLASEVARLKARFVIK 491
>gi|440714895|ref|ZP_20895464.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
gi|436440267|gb|ELP33619.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
Length = 528
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 146/288 (50%), Gaps = 28/288 (9%)
Query: 137 GNHYAEIQIVD---EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E +IV + Y + + G+ D G V + H GSRGFGH +A M+
Sbjct: 248 GNHFGEAEIVSLSSKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDLAMSQFRAMKTHF 306
Query: 194 KRDNIE--TNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + D QL A +S + + A F T L ++ ++F + F
Sbjct: 307 QSSGLSFPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVNHLLINQLVLESFREVFPGI 366
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
+L IY +SHNIA+ E VDG+ + VHRKG+TRA P H L +++ TG P
Sbjct: 367 RGEL----IYFISHNIARQEP--VDGRLQ--WVHRKGATRALPKGHEQLAGTEFESTGHP 418
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL--NKLESQG 362
+L+ G S ++ ++G + S HGAGR LSR K+++NL+ Q V+ N L+
Sbjct: 419 ILLPGNPRDGSSIMV-AQRGASVSAFSVNHGAGRQLSRTKAKKNLN-QTVIDQNLLDHDV 476
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
IS P+ +EAP++YK+ +V+ + G++ + +L+ V+K
Sbjct: 477 ISNCRVYPR---DEAPDAYKDFAEVLKSVTKAGLADEVARLKAKFVLK 521
>gi|108756827|ref|YP_628347.1| hypothetical protein MXAN_0064 [Myxococcus xanthus DK 1622]
gi|108460707|gb|ABF85892.1| conserved hypothetical protein, UPF0027 family [Myxococcus xanthus
DK 1622]
Length = 450
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 141/281 (50%), Gaps = 39/281 (13%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQME-----K 191
GNH+ E+Q+ + G+V VM+H+GSRGFG +A V+ K
Sbjct: 201 GNHFTEMQVDQD---------------GRVWVMLHTGSRGFGWNIAKHFFVEGAAQLGLK 245
Query: 192 AMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
+ D++ D + R N + A F + + A F T
Sbjct: 246 SRSEDHVWL-DAESPLGRDYWNLHN-MAANFAVANRLIIGEAVCAALEDVFGGTAS---- 299
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLIGGT 310
V Y++SHN+ + E GK V RKG+TRAFP HP + ++ TG P+LI G+
Sbjct: 300 -VYYEISHNLIQKEA----GK----FVARKGATRAFPGGHPALKGTPWEKTGHPILIPGS 350
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
M T S +L E G Q++ S HG+GR +SR ++RR L Q+V +K ++ I + +
Sbjct: 351 METGSAILF-AEPGAQKSIYSVNHGSGRRMSRGEARRVLK-QDVTDKRMAEA-GILLNTR 407
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++E+ YKN+ DV++T G+++ ++L+PVA IKG
Sbjct: 408 QTPLDESGPCYKNLDDVLETVEMAGLARVAYRLKPVACIKG 448
>gi|421609581|ref|ZP_16050771.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
gi|408499677|gb|EKK04146.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
Length = 526
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 146/288 (50%), Gaps = 28/288 (9%)
Query: 137 GNHYAEIQIVD---EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E +IV + Y + + G+ D G V + H GSRGFGH +A M+
Sbjct: 246 GNHFGEAEIVSLSSKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDLAMSQFRAMKAHF 304
Query: 194 KRDNIE--TNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + D QL A +S + + A F T L ++ ++F + F
Sbjct: 305 QSSGLAFPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVNHLLINQLVLESFREVFPGI 364
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
+L IY +SHNIA+ E VDG+ + VHRKG+TRA P H + +++ TG P
Sbjct: 365 RGEL----IYFISHNIARQEP--VDGRLQ--WVHRKGATRALPKGHEQMAGTEFESTGHP 416
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL--NKLESQG 362
+L+ G S ++ ++G + S HGAGR LSR K+++NL+ Q V+ N L+
Sbjct: 417 ILLPGNPRDGSSIMV-AQRGASVSAFSVNHGAGRQLSRTKAKKNLN-QTVIDQNLLDHDV 474
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
IS P+ +EAP++YK+ +V+ + G++ + +L+ V+K
Sbjct: 475 ISNCRVYPR---DEAPDAYKDFAEVLKSVTKAGLADEVARLKAKFVLK 519
>gi|378755851|gb|EHY65877.1| hypothetical protein NERG_01484 [Nematocida sp. 1 ERTm2]
Length = 532
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 147/325 (45%), Gaps = 66/325 (20%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL----VQMEKA 192
GNHY E+Q+V +++DK +++G+ D+ VCV +H+GSR G T L Q +
Sbjct: 224 GNHYIEVQVVGDVFDKEVCARLGL-DLDTVCVSVHTGSRSVGSTAVTRLLNKCAEQQDVY 282
Query: 193 MKRDNIET--ND--RQLACARINSNKNKAFAKQ--FNTTPDDLDMHVIY-------DAFA 239
M+ +E ND + +N+ N AF + +D+ +I D
Sbjct: 283 MQTGTVEIPINDPLAEKYFETVNACSNFAFCNRVVIGKEVEDVFREIIKANQPSTDDPNT 342
Query: 240 KQFNTTP-----DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP------ 288
Q P + M VI D +HNI + EE +GK+ + RKGST+ P
Sbjct: 343 AQTTCVPGIGLPQNFTMQVISDSAHNIVRLEER--NGKKVVRI--RKGSTQIVPYGDKER 398
Query: 289 ----------------------PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQ 326
H P + V +GG+M T SYVL+ EKG
Sbjct: 399 KEMGAASGKEDTSTSECAQQGSVHCPYV----------VSVGGSMSTGSYVLSAGEKGEN 448
Query: 327 ETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTD 386
+ TCHG+GR + R +++ + + + +L + +S+RV + + EE+ +YK +
Sbjct: 449 VDY-VTCHGSGRLVRRKDAKQAVTEESIKEELANANVSMRVRNINKIGEESSRTYKCIDK 507
Query: 387 VVDTCHAVGISKKTFKLRPVAVIKG 411
VV+ C G+S K +L P+ IKG
Sbjct: 508 VVEYCKKTGLSNKVCRLIPLGGIKG 532
>gi|32473892|ref|NP_866886.1| hypothetical protein RB5774 [Rhodopirellula baltica SH 1]
gi|32444428|emb|CAD74427.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 528
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 146/288 (50%), Gaps = 28/288 (9%)
Query: 137 GNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E +IV ++ Y + + G+ D G V + H GSRGFGH A M+
Sbjct: 248 GNHFGEAEIVSLSNKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDWAMSQFRAMKTHF 306
Query: 194 KRDNIE--TNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + D QL A +S + + A F T L ++ ++F + F
Sbjct: 307 QSSGLAFPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVNHLLINQLVLESFREVFPGI 366
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
+L IY +SHNIA+ E VDG+ + VHRKG+TRA P H L +++ TG P
Sbjct: 367 RGEL----IYFISHNIARQEP--VDGRLQ--WVHRKGATRALPKGHEQLAGTEFESTGHP 418
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL--NKLESQG 362
+L+ G S ++ ++G + S HGAGR LSR K+++NL+ Q V+ N L+
Sbjct: 419 ILLPGNPRDGSSIMV-AQRGASVSAFSVNHGAGRQLSRTKAKKNLN-QTVIDQNLLDHDV 476
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
IS P+ +EAP++Y++ +V+ + G++ + +L+ V+K
Sbjct: 477 ISNCRVYPR---DEAPDAYQDFAEVLKSVTKAGLADEVARLKAKFVLK 521
>gi|196233202|ref|ZP_03132048.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
gi|196222673|gb|EDY17197.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
Length = 504
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 142/289 (49%), Gaps = 30/289 (10%)
Query: 137 GNHYAE---IQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E ++I D + AA G+ D G + + H GSRGFGH +A+ +++
Sbjct: 221 GNHFGECEAVEIGDNDRARKAAETFGLRD-GGLAFLSHCGSRGFGHNLASGQFRALQRFF 279
Query: 194 KRDNIET--NDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + D++L A + + + A+ F T L ++ +AF +
Sbjct: 280 ETWGLPLPGQDKELVYAPLGTPEADAYLDDMALGANFATVNHLLINALVLEAFQEIIPGA 339
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQP 304
L +Y +SHNIA+ E +VD ++ VHRKG+TRAFP HH L + TG P
Sbjct: 340 TGRL----VYFISHNIARRE--IVDNREA--WVHRKGATRAFPAGHHALRDTPFAETGHP 391
Query: 305 VLIGG--TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
+L+ G T G+C V E G ++ S HGAGRA R + R LD + V ++ +
Sbjct: 392 ILLPGNPTAGSCVMV---AEPGADKSCYSVNHGAGRAKGRKAAIRELDQKTVDDEFITHD 448
Query: 363 ISIRVA-SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
I PK +EAP +YK+ +V+ + G++ + +LR VIK
Sbjct: 449 ILTNCRFYPK---DEAPAAYKDFNEVLRSVERAGLAAEVARLRARFVIK 494
>gi|223935743|ref|ZP_03627659.1| cyclic nucleotide-binding protein [bacterium Ellin514]
gi|223895751|gb|EEF62196.1| cyclic nucleotide-binding protein [bacterium Ellin514]
Length = 503
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 149/300 (49%), Gaps = 34/300 (11%)
Query: 137 GNHYAE---IQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
GNH+ E +++VD + AA G++D V + H GSRG GH++A+ +++
Sbjct: 220 GNHFGECEVVELVDNQRARRAAEVFGMKD-NCVAFLSHCGSRGMGHRLASGQFRTLQEKF 278
Query: 194 KRDNIET--NDRQLACARINSNKNKAFAKQFNTTPDDLDM--------HVIYDAFA-KQF 242
+R I D++L A + + + N DD+ M H++ +A + F
Sbjct: 279 ERWGIALPGQDKELVYAPLGT-------AEANDYLDDMAMGANFATVNHLLINALVLEAF 331
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLT 301
+ ++Y +SHNIA+ E V+G++ VHRKG+TRAFP H+ LI Y T
Sbjct: 332 QEVIPGVKGQLVYFISHNIARRER--VNGEEA--WVHRKGATRAFPAGHYSLIDTPYYET 387
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
G P+L+ G S V+ + G +++ S HGAGR R + R LD ++V L
Sbjct: 388 GHPILLPGNPQDGSVVMV-ADSGAEKSCYSVNHGAGRCKGRKAAIRELDQEKVDAGLAKH 446
Query: 362 GI--SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLA 419
I + RV PK +EAP +YK+ +V+ + G++ KL+ VIK L R A
Sbjct: 447 DILTNCRV-YPK---DEAPAAYKDFGEVLRSVEEAGLASPVAKLKARFVIKDAELGLRGA 502
>gi|383452095|ref|YP_005366084.1| hypothetical protein COCOR_00071 [Corallococcus coralloides DSM
2259]
gi|380727250|gb|AFE03252.1| hypothetical protein COCOR_00071 [Corallococcus coralloides DSM
2259]
Length = 452
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 37/280 (13%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV----QMEKA 192
GNH+ E+Q+ ++ G+V VM+H+GSRGFG +A V Q+
Sbjct: 203 GNHFTEMQV---------------DETGRVWVMLHTGSRGFGWNIAKHFFVAGAAQLGLK 247
Query: 193 MKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ D A R N + A F L + A F T +
Sbjct: 248 SRSEDFVWLDADSALGRSYWNLHN-MAANFAVANRLLIGEAVCGALEDVFGGTAN----- 301
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP-VDYQLTGQPVLIGGTM 311
+ Y++SHN+ + E GK V RKG+TRAFP HP + ++ TG P+LI G+M
Sbjct: 302 IYYEISHNLIQRE----GGK----FVARKGATRAFPAGHPALKGTTWEATGHPILIPGSM 353
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
T S +L E G +++ S HG+GR LSRA +RR L +E ++ GI + +
Sbjct: 354 ETGSAILF-AEPGAEKSIYSVNHGSGRRLSRAAARRQLQQEETDRRMAEAGILLNTRTTP 412
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L +E+ YKN+ DV++T G+++ +L+PVA IKG
Sbjct: 413 L--DESGPCYKNLDDVLETVEQAGLARVAHRLKPVACIKG 450
>gi|355677841|ref|ZP_09060608.1| release factor H-coupled RctB family protein [Clostridium citroniae
WAL-17108]
gi|354812927|gb|EHE97541.1| release factor H-coupled RctB family protein [Clostridium citroniae
WAL-17108]
Length = 357
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 166/383 (43%), Gaps = 58/383 (15%)
Query: 39 QIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR---SPLTLGAGNHYAEI 95
Q+ V LPG++ ++VGLPD+H P + + + + + G +E+
Sbjct: 23 QLCGVGRLPGVI-KAVGLPDLH--PGKIPVGMAVLSQGRFYPHLIGNDIGCGMSLFQSEV 79
Query: 96 QIVDEIYDKWAASKMGIEDVGQVCVMI----HSGSRGFGHQVATAGNHYAEIQIVDEIYD 151
+ DKW I ++G + I R FG GNH+AE Q +D++YD
Sbjct: 80 RQKKFRMDKWVTRLNSIRELGDIPCDIPYEEKCPFRDFG--TIGTGNHFAEFQCLDQVYD 137
Query: 152 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN 211
+ AA K+G+ D G+V ++IHSGSRG+G + + + + +E + A A +
Sbjct: 138 ETAAGKLGLMD-GKVLLLIHSGSRGYGQDI-------LSRFYSPEGLEDGTPE-AEAYLA 188
Query: 212 SNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+ N + N A AK + D + ++ D HN +
Sbjct: 189 EHNNALLWAERNRLA----------AAAKLLDHLGVDSQVKLLMDSCHNYVE-------- 230
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV-LTGTEKGMQETFG 330
+ K +HRKGS A + V+I G+ G+ +YV + G + G+ +
Sbjct: 231 QTKEGWLHRKGSVSA--------------GHRAVVIPGSRGSLTYVCVPGKDTGL--SLN 274
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEEAPESYKNVTDVV 388
S HGAGR +R+ + +D N + S +V L+ EAPE+YKNV V+
Sbjct: 275 SLSHGAGRKWARSICKSRIDRMYDRNSIRSTKYKSQVVCHDTNLLFAEAPEAYKNVEQVI 334
Query: 389 DTCHAVGISKKTFKLRPVAVIKG 411
+ G+ LRP+ KG
Sbjct: 335 GSLQEYGLIHVAATLRPLITFKG 357
>gi|253689917|ref|YP_003019107.1| hypothetical protein PC1_3555 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756495|gb|ACT14571.1| protein of unknown function UPF0027 [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 466
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 153/368 (41%), Gaps = 81/368 (22%)
Query: 44 AALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYD 103
A L I G D P + +R S++ T+G+GNH+ E+QIVD + D
Sbjct: 180 AELASIAGTEAVRADSRHAPEPFFAPREILRPSSLG-----TVGSGNHFVELQIVDAVLD 234
Query: 104 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDV 163
+ AA + G+++ G+V +MIH+GSR G V G +D+ W A +
Sbjct: 235 RHAAYQAGVQE-GEVVIMIHTGSRDVGFYVGQRG--------IDKARACWPAGEK----- 280
Query: 164 GQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFN 223
SG G + ATD + M A + I +R + I S+ + F + +
Sbjct: 281 -----YPASGLFGLVDEQATDYMEAMGVAARYAWI---NRIVLTELIRSSWKQVFTRDTS 332
Query: 224 TTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGS 283
++ D+SHNI E M +HRKG+
Sbjct: 333 K----------------------------LVVDLSHNIILPEHGMN--------LHRKGA 356
Query: 284 TRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA 343
T A G+ LI G+MG SY++TG KG + S HGAGRA R
Sbjct: 357 TPA-------------KAGEFALIPGSMGDYSYLVTG--KGNPDWLWSCSHGAGRAERRQ 401
Query: 344 KSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
R +D + L Q I+++ + + EEAP +YK VT V+D G+ + +L
Sbjct: 402 SMRNKVDTAKSAETLPWQCITLK---DERLREEAPAAYKPVTPVIDIQEQSGLIQPVARL 458
Query: 404 RPVAVIKG 411
RP K
Sbjct: 459 RPWLTFKA 466
>gi|271966907|ref|YP_003341103.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270510082|gb|ACZ88360.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 511
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 132/308 (42%), Gaps = 59/308 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA---- 192
GNH+AE+Q V I+D+ AA G +GQV +M+HSGS GHQ L Q A
Sbjct: 230 GNHFAELQYVSAIHDRQAAHGWGFS-LGQVVLMVHSGSLSLGHQANASGLDQARAAWPAG 288
Query: 193 ----------MKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQF 242
M D R+ + N A +F + ++ A +
Sbjct: 289 VPLPDNRIIPMMTDGRSAPARRRYLDAFGNAANFAVGNRFFLS------LMLRAGLAAEC 342
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
DL +YD HN+ + DG+ +VHRKG+T A + Y + G
Sbjct: 343 GELAADL----VYDAPHNLLWQHD---DGQ----VVHRKGATPAGG-YAETAGGPYAMWG 390
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
+PV++ G+MG SYVL G G T S CHGAGR + RR Q +L++
Sbjct: 391 EPVIVPGSMGAASYVLRG--HGNPRTLASACHGAGR-----RVRRGAAAQAGEAELDAFL 443
Query: 363 ISIRVASP-------------------KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
RV +P + + +EAP YK++ VV + G+++ +L
Sbjct: 444 RDFRVVTPLDHRDPAVNRRSDVMAAWRRDLKQEAPWVYKDIGPVVSSLRRAGVAEPVVEL 503
Query: 404 RPVAVIKG 411
RP+ +KG
Sbjct: 504 RPLLTVKG 511
>gi|167590759|ref|ZP_02383147.1| hypothetical protein BuboB_35813 [Burkholderia ubonensis Bu]
Length = 380
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 173/396 (43%), Gaps = 70/396 (17%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ A LPG+ R G+PD+H P + S+ P +G G+ +
Sbjct: 27 IRQLQLAATLPGMR-RVAGMPDLH--PGRGYPVGAAFFSTGCLY--PALIG-GDIGCGMA 80
Query: 97 IVDEIYDKWAASKMGIEDVGQV---------CVMIHSGSRGF-GHQVATA------GNHY 140
+ D AS + + VGQ+ C G GH A + GNH+
Sbjct: 81 LWQTALDARRASAVRL--VGQLGSIDARLDDCWQASIADAGLAGHAFAASLGTIGSGNHF 138
Query: 141 AEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIET 200
AE+Q +D +YD A +G+ D G++ +++HSGSRGFG + +E+ M
Sbjct: 139 AELQKLDTVYDAEAVQALGL-DRGRLQLLVHSGSRGFGQSI-------LERHMAAHGYNA 190
Query: 201 -NDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSH 259
+D CA ++A ++ DL + A+ ++ + DV+H
Sbjct: 191 LDDTHAECAAYLRRHDEAL--RYAVANRDL---IARRMLARWRSSG------QRVLDVNH 239
Query: 260 NIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLT 319
N+ +VDG L HRKG+T P D PV+I G+ G SY++
Sbjct: 240 NL--VSRAVVDGVPGWL--HRKGAT----------PAD----AGPVVIPGSRGDYSYLVE 281
Query: 320 GTEKGMQETFGSTCHGAGRALSRAKS-----RRNLDYQEVLNKLESQGISIRVASPKLVM 374
+ + S HGAGR SRA RR +Q + +L SQ + + +L+
Sbjct: 282 PLPRDDAASLASLAHGAGRKWSRADCKGRLERRFAPWQLIRTRLGSQ---VVCENRELLY 338
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK + VVD A G+ +K +L PV K
Sbjct: 339 EEAPQAYKPIDSVVDALEAAGLMRKLARLTPVLTYK 374
>gi|407002074|gb|EKE18928.1| protein of unknown function UPF0027, partial [uncultured bacterium]
Length = 417
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 159/379 (41%), Gaps = 73/379 (19%)
Query: 73 MRSSNIWKRSPL--TLGAGNHYAE-------IQIVDEIYDKWAASKMGIEDVGQVCVMIH 123
MR NI ++ L T GN + + ++ ++Y +A ++GI
Sbjct: 68 MRHLNIQTKNELENTQCGGNFFEKEMTRQDIFDVIPKLYLFFAKFRLGI----------- 116
Query: 124 SGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH---- 179
+ AGNH+ ++ V EI D A K+GI+ GQ MIH+GS G
Sbjct: 117 ---------IGAAGNHFLDLMKVGEIADPLMAEKLGIKK-GQYLFMIHTGSGILGQYTMY 166
Query: 180 -----------QVATDALVQMEKAMKRDNIE-----------TNDRQLACARINSN---- 213
Q AL ++ K+ ++ T D L N +
Sbjct: 167 THTAKKAEHLSQALMVALGRLTFRSKKKDVYKKMQEKISLHMTKDDSLLKYDANGDDGEM 226
Query: 214 --KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+A A F T + H I +A K F P M +IYD+ H EEH
Sbjct: 227 YMNARAAASNFGTANRAVITHNISEAIKKLFGKDP---QMDLIYDLPHISITKEEHF--- 280
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K ++VHR ++RA+ P Y+ TG+PV I +M T +Y+ GT+ E+F S
Sbjct: 281 -GKNVIVHRSNTSRAYGPQKMSEHQTYKETGEPVFIPSSMSTDAYICVGTDSN-AESFYS 338
Query: 332 TCHGAGRAL-SRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
HG G+ + KS N +E+ K++ +G+ + A +V+ + YKN+ V+
Sbjct: 339 APHGTGKGKNNNEKSIEN--KEELFAKMKEKGVRLYNAKSSIVINQDSARYKNIDQVIKG 396
Query: 391 CHAVGISKKTFKLRPVAVI 409
G++ K+ PVAV+
Sbjct: 397 VQENGVAHVVAKMEPVAVL 415
>gi|406992592|gb|EKE11929.1| hypothetical protein ACD_14C00070G0005, partial [uncultured
bacterium]
Length = 304
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 54/315 (17%)
Query: 133 VATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV----------- 181
+ AGNH+ ++ V +I D A K G++ GQ +M+H+GS G
Sbjct: 4 LGAAGNHFLDMLKVSDIIDPEIAQKFGLKK-GQYLLMVHTGSGILGQYTMYTHTAKKAEH 62
Query: 182 -----------------ATDALVQMEKAM-----KRDNIETNDRQLACARINSNKNKAFA 219
D +M++ + K D++ T D ++ N +A A
Sbjct: 63 LSQALMVMLGKLTFRSSKKDVYKKMQEKIAKHMTKDDSLLTYDGNGEDGKMYMNA-RAAA 121
Query: 220 KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 279
F T + +H I + +++M +IYD+ H E H +K + VH
Sbjct: 122 SNFGTANRAVIIHNIATTMQEVLGR---EVEMDLIYDLPHISITKENHF----EKDVWVH 174
Query: 280 RKGSTRAFPP----HHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHG 335
R ++RAF P HP+ Y+ TG+PV I +M T +Y+ GT++ +E+F S HG
Sbjct: 175 RSNTSRAFGPAKMAEHPI----YKETGEPVFIPSSMSTDAYICVGTDRN-EESFYSAPHG 229
Query: 336 AGRALSRA-KSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAV 394
G+ + A K+ N D E+ K+E +G+ + A +V+ + YKN+ V++ A
Sbjct: 230 TGKGKNNAEKTIENKD--ELFAKMEEKGVKLYNAKSSIVINQDSARYKNIDQVIEGVEAN 287
Query: 395 GISKKTFKLRPVAVI 409
GI+ K+ PVAVI
Sbjct: 288 GIAHVVAKMEPVAVI 302
>gi|194378000|dbj|BAG63363.1| unnamed protein product [Homo sapiens]
Length = 156
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
>gi|194388518|dbj|BAG60227.1| unnamed protein product [Homo sapiens]
Length = 175
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 22/23 (95%)
Query: 414 LNERLAQSMFDHIPVGVGSKGII 436
+ E+LAQ+MFDHIPVGVGSKG++
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVM 161
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 21/21 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGII 489
E+LAQ+MFDHIPVGVGSKG++
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVM 161
>gi|227327976|ref|ZP_03832000.1| hypothetical protein PcarcW_11830 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 466
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 155/370 (41%), Gaps = 85/370 (22%)
Query: 44 AALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYD 103
A L I G D P + +R S++ T+G+GNH+ E+QIVD + D
Sbjct: 180 AELGSIAGTDTVRADSRHAPEPFFAPREILRPSSLG-----TVGSGNHFVELQIVDAVLD 234
Query: 104 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDV 163
+ AA + G+++ G+V VMIH+GSR G V G +D+ W A +
Sbjct: 235 RHAAYQAGVQE-GEVVVMIHTGSRDVGFYVGQRG--------IDKARACWPAGEK----- 280
Query: 164 GQVCVMIHSGSRGFG--HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ 221
+ S FG + ATD + M A + I +R + I S+ + F +
Sbjct: 281 -------YPASVLFGLVDEQATDYMEAMGVAARYAWI---NRIVLTELIRSSWKQVFTRD 330
Query: 222 FNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 281
+ ++ D+SHNI E M +HRK
Sbjct: 331 AS----------------------------KLVVDLSHNIILPEHGMN--------LHRK 354
Query: 282 GSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALS 341
G+T A G+ LI G+MG SY++TG KG + S HGAGRA
Sbjct: 355 GATPA-------------KAGEFALIPGSMGDYSYLVTG--KGNPDWLWSCSHGAGRAER 399
Query: 342 RAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTF 401
R R +D + + L Q I+++ + + EEAP +YK VT V+D G+ +
Sbjct: 400 RQSMRNKVDAAKQADTLPWQCITLK---DERLREEAPAAYKPVTPVIDIQEQSGLIQPVA 456
Query: 402 KLRPVAVIKG 411
+LRP K
Sbjct: 457 RLRPWLTFKA 466
>gi|383111494|ref|ZP_09932304.1| hypothetical protein BSGG_4322 [Bacteroides sp. D2]
gi|313696787|gb|EFS33622.1| hypothetical protein BSGG_4322 [Bacteroides sp. D2]
Length = 389
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 137/327 (41%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ E D W VMIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSAMVPGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N ++ + + + D + +++HN A
Sbjct: 224 VAFAFANR-------------------QLMMNRICESIQAVKPETDFEPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ G+ +I G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAY-------------EGEIGIIPGSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E +++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMDQQGI-IHGLRSQNELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLVELAPMAVIKG 389
>gi|295084035|emb|CBK65558.1| Uncharacterized conserved protein [Bacteroides xylanisolvens XB1A]
Length = 389
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 138/327 (42%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ E D W VMIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 224 VAFAFANRQ---------------LMMTRICEA----IQAVKPETDFEPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ G+ +I G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAY-------------EGEIGIIPGSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E ++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMNQQGI-IHGLRSQDELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLVELAPMAVIKG 389
>gi|298481165|ref|ZP_06999359.1| protein RtcB [Bacteroides sp. D22]
gi|423213761|ref|ZP_17200290.1| hypothetical protein HMPREF1074_01822 [Bacteroides xylanisolvens
CL03T12C04]
gi|298272739|gb|EFI14306.1| protein RtcB [Bacteroides sp. D22]
gi|392693418|gb|EIY86650.1| hypothetical protein HMPREF1074_01822 [Bacteroides xylanisolvens
CL03T12C04]
Length = 389
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 138/327 (42%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ E D W VMIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 224 VAFAFANRQ---------------LMMTRICEA----IQAVKPETDFEPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ G+ +I G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAY-------------EGEIGIIPGSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E ++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMNQQGI-IHGLRSQDELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLVELAPMAVIKG 389
>gi|336401990|ref|ZP_08582735.1| hypothetical protein HMPREF0127_00048 [Bacteroides sp. 1_1_30]
gi|335948712|gb|EGN10414.1| hypothetical protein HMPREF0127_00048 [Bacteroides sp. 1_1_30]
Length = 389
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 137/327 (41%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ E D W VMIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 224 VAFAFANRQ---------------LMMTRICEA----IQAVKPETDFEPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ +IP G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAYEGEIGIIP-------------GSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E ++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMNQQGI-IHGLRSQDELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLVELAPMAVIKG 389
>gi|421082586|ref|ZP_15543469.1| Hypothetical protein Y17_3889 [Pectobacterium wasabiae CFBP 3304]
gi|401702823|gb|EJS93063.1| Hypothetical protein Y17_3889 [Pectobacterium wasabiae CFBP 3304]
Length = 466
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 141/327 (43%), Gaps = 76/327 (23%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T+G+GNH+ E+QIVD + D+ AA + G+++ G+V +MIH+GSR G V G
Sbjct: 216 TVGSGNHFVELQIVDAVLDRHAAYQAGVKE-GEVVIMIHTGSRDVGFYVGQRG------- 267
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D+ W A + SG G A D + M A + I +R
Sbjct: 268 -IDKARACWPAGEK----------YPASGLFGLVDAHAADYMEAMGVAARYAWI---NRI 313
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+ I S+ + F + + ++ D+SHNI
Sbjct: 314 VLTELIRSSWKQVFTRDTSK----------------------------LVVDLSHNIILP 345
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E M +HRKG+T A G+ LI G+MG SY++TG KG
Sbjct: 346 EHGMN--------LHRKGATPA-------------KAGEFALIPGSMGDYSYLVTG--KG 382
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+ S HGAGRA R R +D + ++ L Q I+++ + + EEAP +YK V
Sbjct: 383 DPDWLWSCSHGAGRAERRQSMRNKIDTAKQVDALPWQCITLK---DERLREEAPAAYKPV 439
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
T V+D G+ + +LRP K
Sbjct: 440 TPVIDIQEQSGLIQPVARLRPWLTFKA 466
>gi|77967077|gb|ABB08457.1| protein of unknown function UPF0027 [Burkholderia sp. 383]
Length = 402
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 167/390 (42%), Gaps = 58/390 (14%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGA--GNHYAE 94
++Q+ + A LPG+ R G+PD+H P + S+ + P +G G A
Sbjct: 47 IRQLEHAATLPGMR-RVAGMPDLH--PGRGYPVGAAFFSTG--QLYPALIGGDIGCGMAL 101
Query: 95 IQIV---DEIYDKWAASKMG-IEDVGQVCVMIHSGSRGFGHQVATA-------GNHYAEI 143
Q + AS++G I+ + GF A GNH+AE
Sbjct: 102 WQTALDARRVSASKLASRLGSIDATPDASWQPLIAAAGFADHAYAASLGTIGSGNHFAEA 161
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIE-TND 202
Q +D +YD A + +G+ D ++ +++HSGSRGFG + +E+ M+ +D
Sbjct: 162 QRIDAVYDTDAVAALGL-DPDRLLLLVHSGSRGFGQSI-------LEQHMREHGYNGLDD 213
Query: 203 RQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIA 262
AC + + A ++ DL I ++ T D + DV+HN+
Sbjct: 214 TDAACTAYLARHDAAL--RYAIANRDL----IARRMLARWRT-----DGRCVLDVNHNL- 261
Query: 263 KTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE 322
VDG+ L HRKG+T P D PV+I G+ G SY++
Sbjct: 262 -VSRATVDGEPGWL--HRKGAT----------PAD----AGPVVIPGSRGDYSYLVAPVR 304
Query: 323 KGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ--GISIRVASPKLVMEEAPES 380
+ S HGAGR +R + L+ + ++L G + +L+ EEAP++
Sbjct: 305 PDDAASLASLAHGAGRKWARGDCKGRLERRFTPSQLTRTPLGSHVICEDRELLYEEAPQA 364
Query: 381 YKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
YK + VVD A G+ +K +L PV K
Sbjct: 365 YKPIDSVVDALEAAGLLRKLARLAPVLTYK 394
>gi|161702960|ref|YP_369101.2| hypothetical protein Bcep18194_A4862 [Burkholderia sp. 383]
Length = 382
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 167/390 (42%), Gaps = 58/390 (14%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGA--GNHYAE 94
++Q+ + A LPG+ R G+PD+H P + S+ + P +G G A
Sbjct: 27 IRQLEHAATLPGMR-RVAGMPDLH--PGRGYPVGAAFFSTG--QLYPALIGGDIGCGMAL 81
Query: 95 IQIV---DEIYDKWAASKMG-IEDVGQVCVMIHSGSRGFGHQVATA-------GNHYAEI 143
Q + AS++G I+ + GF A GNH+AE
Sbjct: 82 WQTALDARRVSASKLASRLGSIDATPDASWQPLIAAAGFADHAYAASLGTIGSGNHFAEA 141
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIE-TND 202
Q +D +YD A + +G+ D ++ +++HSGSRGFG + +E+ M+ +D
Sbjct: 142 QRIDAVYDTDAVAALGL-DPDRLLLLVHSGSRGFGQSI-------LEQHMREHGYNGLDD 193
Query: 203 RQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIA 262
AC + + A ++ DL I ++ T D + DV+HN+
Sbjct: 194 TDAACTAYLARHDAAL--RYAIANRDL----IARRMLARWRT-----DGRCVLDVNHNL- 241
Query: 263 KTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE 322
VDG+ L HRKG+T P D PV+I G+ G SY++
Sbjct: 242 -VSRATVDGEPGWL--HRKGAT----------PAD----AGPVVIPGSRGDYSYLVAPVR 284
Query: 323 KGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ--GISIRVASPKLVMEEAPES 380
+ S HGAGR +R + L+ + ++L G + +L+ EEAP++
Sbjct: 285 PDDAASLASLAHGAGRKWARGDCKGRLERRFTPSQLTRTPLGSHVICEDRELLYEEAPQA 344
Query: 381 YKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
YK + VVD A G+ +K +L PV K
Sbjct: 345 YKPIDSVVDALEAAGLLRKLARLAPVLTYK 374
>gi|239623938|ref|ZP_04666969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521969|gb|EEQ61835.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 357
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 165/385 (42%), Gaps = 62/385 (16%)
Query: 39 QIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR---SPLTLGAGNHYAEI 95
Q+ V LPG++ R+VGLPD+H P + + + + + G E+
Sbjct: 23 QLCGVGRLPGVI-RAVGLPDLH--PGKTPVGMAVLSQGRFYPHLIGNDIGCGMSLFKTEV 79
Query: 96 QIVDEIYDKWAA---SKMGIEDVGQVCVMIHSGS---RGFGHQVATAGNHYAEIQIVDEI 149
+ DKW S G+ED+ C + + + R FG AGNH+AE Q +D++
Sbjct: 80 KQKKFKMDKWVTRLNSIRGLEDI--PCDIPYEEACPIRDFG--TIGAGNHFAEFQCLDQV 135
Query: 150 YDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAR 209
YD A K+G+ D G++ ++IHSGSRG+G ++ + + D ++ + A A
Sbjct: 136 YDGDRAEKLGLMD-GKIFLLIHSGSRGYGQEI-------LSRFYSPDGLKEGTSK-ADAY 186
Query: 210 INSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHN-IAKTEEHM 268
+ + N N A K + D + D HN + +T E
Sbjct: 187 LAEHDNALLWAGRNRLA----------AAVKLLDYLNVDSRTERLTDSCHNYVEQTREGW 236
Query: 269 VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQET 328
+HRKGS A HH L+ I G+ G+ +YV + +
Sbjct: 237 ---------LHRKGSVSA--GHHALV------------IPGSRGSLTYVCV-PGRDTHIS 272
Query: 329 FGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEEAPESYKNVTD 386
S HGAGR +R+ + +D + N + S +V L+ EAPE+YKNV
Sbjct: 273 LDSISHGAGRKWARSICKSRIDRKYDRNSIRSTRYKSQVVCHDTNLLFAEAPEAYKNVEQ 332
Query: 387 VVDTCHAVGISKKTFKLRPVAVIKG 411
V+++ G+ LRP+ KG
Sbjct: 333 VMESLLEYGLVDVVATLRPLITFKG 357
>gi|337738586|ref|YP_004638033.1| hypothetical protein SMB_G3419 [Clostridium acetobutylicum DSM
1731]
gi|384460097|ref|YP_005672517.1| hypothetical protein CEA_G3385 [Clostridium acetobutylicum EA 2018]
gi|325510786|gb|ADZ22422.1| hypothetical protein CEA_G3385 [Clostridium acetobutylicum EA 2018]
gi|336291677|gb|AEI32811.1| hypothetical protein SMB_G3419 [Clostridium acetobutylicum DSM
1731]
Length = 410
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 56/290 (19%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM-- 193
GNH+ E+Q +++G++C+MIHSGSR FG QV D + + +
Sbjct: 163 GGNHFIELQE---------------DELGKLCIMIHSGSRNFGKQVC-DYFNNIARELNE 206
Query: 194 KRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL---- 249
K + + +LA +++K K + N L + Y+ AK + +
Sbjct: 207 KWKSSVPQEFRLAFLPTDTDKGKRYINWMN-----LALDFAYENRAKMMDNVKSIIEKWL 261
Query: 250 ----DMHVIY----DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
D+++ Y + HN A+ E H K + VHRKG+T A +IP
Sbjct: 262 NKYTDLNIEYTEEINCHHNYARLENHY----GKNVWVHRKGATSAREGELAVIP------ 311
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
G MG+ SYV+ G KG +E+F S+ HGAGR SR + N +EV+ L+++
Sbjct: 312 -------GAMGSFSYVVEG--KGNKESFCSSSHGAGRRYSRKAAMNNFTVEEVMKDLKTR 362
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + K + EE+ +YKN+ +V+ + + K KL+ + V+KG
Sbjct: 363 NVILGKGKKKDIPEESRFAYKNIDEVM--LNQTDLVKPIKKLKTIGVVKG 410
>gi|299146001|ref|ZP_07039069.1| protein RtcB [Bacteroides sp. 3_1_23]
gi|298516492|gb|EFI40373.1| protein RtcB [Bacteroides sp. 3_1_23]
Length = 389
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 137/327 (41%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ D W VMIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTATSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 224 VAFAFANRQ---------------LMMTRICEAI----QAVKPETDFDPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ +IP G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAYEGEIGIIP-------------GSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E +++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMDQQGI-IHGLRSQNELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLMELAPMAVIKG 389
>gi|77165476|ref|YP_344001.1| hypothetical protein Noc_2009 [Nitrosococcus oceani ATCC 19707]
gi|254434860|ref|ZP_05048368.1| Uncharacterized protein family UPF0027 [Nitrosococcus oceani AFC27]
gi|76883790|gb|ABA58471.1| Protein of unknown function UPF0027 [Nitrosococcus oceani ATCC
19707]
gi|207091193|gb|EDZ68464.1| Uncharacterized protein family UPF0027 [Nitrosococcus oceani AFC27]
Length = 396
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 137/285 (48%), Gaps = 42/285 (14%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ EIQ + G + +MIHSGSR G VA +
Sbjct: 150 YQIGTLGGGNHFIEIQKGSD---------------GYIWIMIHSGSRNIGFTVA-NHYEG 193
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQFNTTP 246
+ K M +D E ++LA S K + + N + + ++ + F
Sbjct: 194 VAKKMNQDAGEDVSQELAYIPETSEYFKLYWNEMNYCLEFALANRKLMMERARSAFTEIL 253
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+++ + HN A E+H + ++VHRKG+TRA +IP
Sbjct: 254 PEVEFADFINKPHNFAAEEKHFGE----WVIVHRKGATRARKGEWGMIP----------- 298
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+ GT S+++ G KG ++F S HGAGR +SR K+R+ LD +E + L+ +GI +
Sbjct: 299 --GSQGTRSFLVKG--KGEAQSFESCAHGAGRIMSRTKARKTLDLKEEVKALKDRGI-LH 353
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++EAP SYK++ +V+ + V + +L+P+AVIKG
Sbjct: 354 AIRHRKDLDEAPGSYKDIDEVM--ANQVDLVDVQIELQPLAVIKG 396
>gi|237718093|ref|ZP_04548574.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229452514|gb|EEO58305.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 384
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 137/327 (41%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ D W VMIHSGSR G +VA NHY +
Sbjct: 141 TLGGGNHFIEIQKDTATSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 181
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 182 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 218
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 219 VAFAFANRQ---------------LMMTRICEAI----QAVKPETDFDPMINIAHNYAAW 259
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ +IP G+MGT SY++ G G
Sbjct: 260 ENHF----DQDVIVHRKGATRAYEGEIGIIP-------------GSMGTKSYIVEGL--G 300
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E +++ QGI I + ++EAP +YK++
Sbjct: 301 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMDQQGI-IHGLRSQNELDEAPGAYKDI 359
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 360 AQVI--ANERDLVKPLVELAPMAVIKG 384
>gi|423296282|ref|ZP_17274367.1| hypothetical protein HMPREF1070_03032 [Bacteroides ovatus
CL03T12C18]
gi|392670892|gb|EIY64370.1| hypothetical protein HMPREF1070_03032 [Bacteroides ovatus
CL03T12C18]
Length = 389
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 137/327 (41%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ D W VMIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTATSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 224 VAFAFANRQ---------------LMMTRICEAI----QAVKPETDFDPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ +IP G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAYEGEIGIIP-------------GSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E +++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMDQQGI-IHGLRSQNELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLVELAPMAVIKG 389
>gi|262406506|ref|ZP_06083055.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646104|ref|ZP_06723767.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294808301|ref|ZP_06767059.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|345510056|ref|ZP_08789634.1| hypothetical protein BSAG_02912 [Bacteroides sp. D1]
gi|229445410|gb|EEO51201.1| hypothetical protein BSAG_02912 [Bacteroides sp. D1]
gi|262355209|gb|EEZ04300.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638548|gb|EFF56903.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294444520|gb|EFG13229.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 389
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 137/326 (42%), Gaps = 83/326 (25%)
Query: 86 LGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQI 145
LG GNH+ EIQ E D W VMIHSGSR G +VA NHY +I
Sbjct: 147 LGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVA---NHYN--KI 187
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQL 205
+KW + V+ A + ME M +D + +
Sbjct: 188 AQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYCV 224
Query: 206 ACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 265
A A N L M I +A + D + +++HN A E
Sbjct: 225 AFAFANRQ---------------LMMTRICEA----IQAVKPETDFEPMINIAHNYAAWE 265
Query: 266 EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM 325
H + ++VHRKG+TRA+ G+ +I G+MGT SY++ G G
Sbjct: 266 NHF----DQDVIVHRKGATRAY-------------EGEIGIIPGSMGTKSYIVEGL--GN 306
Query: 326 QETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVT 385
E+F S HGAGR + R + R L E ++ QGI I + ++EAP +YK++
Sbjct: 307 PESFKSCSHGAGRLMGRKDACRRLSLDEEKERMNQQGI-IHGLRSQDELDEAPGAYKDIA 365
Query: 386 DVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 366 QVI--ANERDLVKPLVELAPMAVIKG 389
>gi|355627973|ref|ZP_09049526.1| release factor H-coupled RctB family protein [Clostridium sp.
7_3_54FAA]
gi|354820028|gb|EHF04458.1| release factor H-coupled RctB family protein [Clostridium sp.
7_3_54FAA]
Length = 358
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 170/386 (44%), Gaps = 60/386 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLT-LGAGNHYAEI 95
V Q+ V+ LPG++ R+VGLPD+H P + + + +G G
Sbjct: 22 VDQLRGVSRLPGMI-RTVGLPDLH--PGNTPVGMAALSRGRFYPHLIGNDIGCGMSLFST 78
Query: 96 QIVDEIY--DKWAASKMGIEDVGQV-CVMIHSGS---RGFGHQVATAGNHYAEIQIVDEI 149
Q+ + + +KW I ++G + C + R FG +GNH+ E Q ++++
Sbjct: 79 QVRRKRFKMEKWVTRLNSIRELGDIPCDNPYEEECPIRDFG--TIGSGNHFIEFQCLEQV 136
Query: 150 YDKWAASKMGIEDVGQ-VCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACA 208
YD+ AA MG+ +G+ V V++HSGSRG+G ++ + + + + IE + Q A
Sbjct: 137 YDESAAKAMGL--LGENVLVLVHSGSRGYGQEI-------LSRYNRPEGIEEDSIQAAAY 187
Query: 209 RINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
+ +A + A K + D + ++ + HN + E
Sbjct: 188 LAAHDDALKWAGRNRLA-----------AAGKLLDYLNTDSQLDILMESCHNYLEQTE-- 234
Query: 269 VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV-LTGTEKGMQE 327
DG +HRKGS A V+I G+ G+ +YV + G + G+
Sbjct: 235 -DG-----WLHRKGSVSA--------------KHGAVVIPGSRGSLTYVCVPGKDTGI-- 272
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEEAPESYKNVT 385
+ S HGAGR +R+ + +D + N + S +V L+ EAPE+YKNV
Sbjct: 273 SLDSLSHGAGRKWARSVCKSRIDRKYDRNSIRSTKFKSQVVCHDTNLLFAEAPEAYKNVE 332
Query: 386 DVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + G+ + LRP+ KG
Sbjct: 333 QVIASLQEFGLIEVAATLRPLITYKG 358
>gi|323691950|ref|ZP_08106200.1| hypothetical protein HMPREF9475_01063 [Clostridium symbiosum
WAL-14673]
gi|323504008|gb|EGB19820.1| hypothetical protein HMPREF9475_01063 [Clostridium symbiosum
WAL-14673]
Length = 364
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 170/386 (44%), Gaps = 60/386 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLT-LGAGNHYAEI 95
V Q+ V+ LPG++ R+VGLPD+H P + + + +G G
Sbjct: 28 VDQLRGVSRLPGMI-RTVGLPDLH--PGNTPVGMAALSRGRFYPHLIGNDIGCGMSLFST 84
Query: 96 QIVDEIY--DKWAASKMGIEDVGQV-CVMIHSGS---RGFGHQVATAGNHYAEIQIVDEI 149
Q+ + + +KW I ++G + C + R FG +GNH+ E Q ++++
Sbjct: 85 QVRRKRFKMEKWVTRLNSIRELGDIPCDNPYEEECPIRDFG--TIGSGNHFIEFQCLEQV 142
Query: 150 YDKWAASKMGIEDVGQ-VCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACA 208
YD+ AA MG+ +G+ V V++HSGSRG+G ++ + + + + IE + Q A
Sbjct: 143 YDESAAKAMGL--LGENVLVLVHSGSRGYGQEI-------LSRYNRPEGIEEDSIQAAAY 193
Query: 209 RINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
+ +A + A K + D + ++ + HN + E
Sbjct: 194 LAAHDDALKWAGRNRLA-----------AAGKLLDYLNTDSQLDILMESCHNYLEQTE-- 240
Query: 269 VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV-LTGTEKGMQE 327
DG +HRKGS A V+I G+ G+ +YV + G + G+
Sbjct: 241 -DG-----WLHRKGSVSA--------------KHGAVVIPGSRGSLTYVCVPGKDTGI-- 278
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEEAPESYKNVT 385
+ S HGAGR +R+ + +D + N + S +V L+ EAPE+YKNV
Sbjct: 279 SLDSLSHGAGRKWARSVCKSRIDRKYDRNSIRSTKFKSQVVCHDTNLLFAEAPEAYKNVE 338
Query: 386 DVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + G+ + LRP+ KG
Sbjct: 339 QVIASLQEFGLIEVAATLRPLITYKG 364
>gi|293369745|ref|ZP_06616321.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292635167|gb|EFF53683.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 389
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 137/327 (41%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ D W VMIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTATSDVW--------------VMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 224 VAFAFANRQ---------------LMMTRICEAI----QAVKPETDFDPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ +IP G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAYEGEIGIIP-------------GSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E +++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMDQQGI-IHGLRSQNELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLVELAPMAVIKG 389
>gi|160884445|ref|ZP_02065448.1| hypothetical protein BACOVA_02429 [Bacteroides ovatus ATCC 8483]
gi|423286495|ref|ZP_17265346.1| hypothetical protein HMPREF1069_00389 [Bacteroides ovatus
CL02T12C04]
gi|156110184|gb|EDO11929.1| hypothetical protein BACOVA_02429 [Bacteroides ovatus ATCC 8483]
gi|392675182|gb|EIY68624.1| hypothetical protein HMPREF1069_00389 [Bacteroides ovatus
CL02T12C04]
Length = 389
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 139/328 (42%), Gaps = 85/328 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEI- 143
TLG GNH+ EIQ D W VMIHSGSR G +VA NHY +I
Sbjct: 146 TLGGGNHFIEIQKDTATSDVW--------------VMIHSGSRNIGLKVA---NHYNKIA 188
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDR 203
Q +E KW + V+ A + ME M +D +
Sbjct: 189 QYWNE---KW-----------------------YSKMVSGLAYLPMETQMAKDYFREMNY 222
Query: 204 QLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAK 263
+A A N L M I +A + D + +++HN A
Sbjct: 223 CVAFAFANRQ---------------LMMTRICEAI----QAVKPETDFDPMINIAHNYAA 263
Query: 264 TEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK 323
E H + ++VHRKG+TRA+ +IP G+MGT SY++ G
Sbjct: 264 WENHF----DQDVIVHRKGATRAYEGEIGIIP-------------GSMGTKSYIVEGL-- 304
Query: 324 GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKN 383
G E+F S HGAGR + R + R L E +++ QGI I + ++EAP +YK+
Sbjct: 305 GNPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMDQQGI-IHGLRSQNELDEAPGAYKD 363
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V+ + + K +L P+AVIKG
Sbjct: 364 IAQVI--ANERDLVKPLVELAPMAVIKG 389
>gi|227115463|ref|ZP_03829119.1| hypothetical protein PcarbP_21018 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 267
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 143/327 (43%), Gaps = 76/327 (23%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T+G+GNH+ E+QIVD + D+ AA + G+++ G+V VMIH+GSR G V G
Sbjct: 17 TVGSGNHFVELQIVDAVLDRHAAYQAGVQE-GEVVVMIHTGSRDVGFYVGQRG------- 68
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D+ W A + SG G + AT+ + M A + I +R
Sbjct: 69 -IDKARACWPAGEK----------YPASGLFGLVDEQATEYMEAMGVAARYAWI---NRI 114
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+ I S+ + F +DA ++ D+SHNI
Sbjct: 115 VLTELIRSSWKQVFT---------------HDA-------------SKLVVDLSHNIILP 146
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E M +HRKG+T A G+ LI G+MG SY++TG KG
Sbjct: 147 EHGMN--------LHRKGATPA-------------KAGEFALIPGSMGDYSYLVTG--KG 183
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+ S HGAGRA R R ++ + + L Q I+++ + + EEAP +YK V
Sbjct: 184 NPDWLWSCSHGAGRAERRQSMRNKVETAKQADTLPWQCITLK---DERLREEAPAAYKPV 240
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
T V+D G+ + +LRP K
Sbjct: 241 TPVIDIQAQSGLIQPVARLRPWLTFKA 267
>gi|402696899|gb|AFQ90638.1| chromosome 22 open reading frame 28, partial [Draco beccarii]
Length = 222
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 48/58 (82%)
Query: 490 PMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
PMNA+DL EALEM + WSL GY WAEDK HCEEYGRML ADP+K S RAKKRGLPQ+
Sbjct: 93 PMNAKDLXEALEMXVXWSLXXGYAWAEDKXHCEEYGRMLQADPNKXSARAKKRGLPQL 150
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 64/107 (59%), Gaps = 9/107 (8%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVATAGN--HYAEIQIVDEIYDKWAAS 156
WA K E+ G++ + RG Q+ T G HY IQ+VD+IY++ AA
Sbjct: 117 WAEDKXHCEEYGRMLQADPNKXSARAKKRGLP-QLGTLGXXXHYXXIQVVDDIYNEXAAR 175
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDR 203
K I+ QVCVMIHS SRG GHQVATDAL MEKAMKRD I NDR
Sbjct: 176 KXXIDHXXQVCVMIHSDSRGLGHQVATDALXAMEKAMKRDKIIVNDR 222
>gi|407010195|gb|EKE25155.1| hypothetical protein ACD_5C00268G0002 [uncultured bacterium]
Length = 497
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 153/331 (46%), Gaps = 43/331 (12%)
Query: 87 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIV 146
AGNH+ ++ + ++ D A K+G++ GQ +IH+GS G
Sbjct: 200 AAGNHFLDLFKISDVIDPKIAEKLGVKK-GQYLFLIHTGSGILGQ--------------- 243
Query: 147 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM-----KRDNIETN 201
Y + + E + Q VM+ G F + +M++ + K D++ T
Sbjct: 244 ---YTMYTHTAKKAEHLSQ-AVMVALGKLTF-KTTKKEVYSKMQEKIAQHMIKDDSLLTY 298
Query: 202 DRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNI 261
D ++ N +A A F T + H I AK+ D+++ ++YD+ H
Sbjct: 299 DGDGEDGKLYMNA-RAAASNFGTANRAVITHNIAQT-AKEI--LGRDIELDLVYDLPHIS 354
Query: 262 AKTEEHMVDGKQKTLLVHRKGSTRAFPP---HHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
E H +K + VHR ++RA+ P +HP+ Y+ TG+PV I +M T Y+
Sbjct: 355 ITRENHF----EKDVWVHRSSTSRAYGPSKTNHPI----YKETGEPVFIPSSMSTDGYLC 406
Query: 319 TGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAP 378
GT++ E+F S HG G+ ++ + +E+ K+ +G+ + A +V ++
Sbjct: 407 VGTDRN-DESFYSAPHGTGKGVN-TNEKSVSSKEELFAKMNEKGVKLYNAKSSIVTKQDS 464
Query: 379 ESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409
Y+NV V+++ A GI+ K++PVAVI
Sbjct: 465 ARYRNVDKVIESVEANGIAHVVAKMKPVAVI 495
>gi|336413562|ref|ZP_08593914.1| hypothetical protein HMPREF1017_01022 [Bacteroides ovatus
3_8_47FAA]
gi|335938606|gb|EGN00496.1| hypothetical protein HMPREF1017_01022 [Bacteroides ovatus
3_8_47FAA]
Length = 389
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 137/327 (41%), Gaps = 83/327 (25%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ D W +MIHSGSR G +VA NHY +
Sbjct: 146 TLGGGNHFIEIQKDTATSDVW--------------LMIHSGSRNIGLKVA---NHYN--K 186
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I +KW + V+ A + ME M +D +
Sbjct: 187 IAQYWNEKW-----------------------YSEMVSGLAYLPMETQMAKDYFREMNYC 223
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+A A N L M I +A + D + +++HN A
Sbjct: 224 VAFAFANRQ---------------LMMTRICEAI----QAVKPETDFDPMINIAHNYAAW 264
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H + ++VHRKG+TRA+ +IP G+MGT SY++ G G
Sbjct: 265 ENHF----DQDVIVHRKGATRAYEGEIGIIP-------------GSMGTKSYIVEGL--G 305
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E+F S HGAGR + R + R L E +++ QGI I + ++EAP +YK++
Sbjct: 306 NPESFKSCSHGAGRLMGRKDACRRLSLDEEKERMDQQGI-IHGLRSQNELDEAPGAYKDI 364
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + + K +L P+AVIKG
Sbjct: 365 AQVI--ANERDLVKPLMELAPMAVIKG 389
>gi|323486905|ref|ZP_08092221.1| hypothetical protein HMPREF9474_03972 [Clostridium symbiosum
WAL-14163]
gi|323399768|gb|EGA92150.1| hypothetical protein HMPREF9474_03972 [Clostridium symbiosum
WAL-14163]
Length = 364
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 167/386 (43%), Gaps = 58/386 (15%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLT-LGAGNHYAE 94
V Q+ V+ LPG++ R+VGLPD+H P + + + +G G
Sbjct: 27 AVDQLRGVSRLPGMI-RTVGLPDLH--PGNTPVGMAALSRGRFYPHLIGNDIGCGMSLFS 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQV-CVMIHSGS---RGFGHQVATAGNHYAEIQIVDE 148
Q+ + + +KW I ++G + C + R FG +GNH+ E Q +++
Sbjct: 84 TQVRRKRFKMEKWVTRLNSIRELGDIPCDNPYEEECPIRDFG--TIGSGNHFIEFQCLEQ 141
Query: 149 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACA 208
+YD+ AA MG+ V V++HSGSRG+G ++ + + + + IE + Q A
Sbjct: 142 VYDESAAKAMGLL-CENVLVLVHSGSRGYGQEI-------LSRYNRPEGIEEDSIQAAAY 193
Query: 209 RINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
+ +A + A K + D + ++ + HN + E
Sbjct: 194 LAAHDDALKWAGRNRLA-----------AAGKLLDYLNTDSQLDILMESCHNYLEQTE-- 240
Query: 269 VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV-LTGTEKGMQE 327
DG +HRKGS A V+I G+ G+ +YV + G + G+
Sbjct: 241 -DG-----WLHRKGSVSA--------------KHGAVVIPGSRGSLTYVCVPGKDTGI-- 278
Query: 328 TFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEEAPESYKNVT 385
+ S HGAGR +R+ + +D + N + S +V L+ EAPE+YKNV
Sbjct: 279 SLDSLSHGAGRKWARSVCKSRIDRKYDRNSIRSTKFKSQVVCHDTNLLFAEAPEAYKNVE 338
Query: 386 DVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + G+ + LRP+ KG
Sbjct: 339 QVIASLQEFGLIEVAATLRPLITYKG 364
>gi|114330884|ref|YP_747106.1| hypothetical protein Neut_0880 [Nitrosomonas eutropha C91]
gi|114307898|gb|ABI59141.1| protein of unknown function UPF0027 [Nitrosomonas eutropha C91]
Length = 390
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 50/289 (17%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ EIQ + G + +MIHSGSR G VA +
Sbjct: 144 YQIGTLGGGNHFIEIQKGSD---------------GYIWIMIHSGSRNIGFTVA-NHYND 187
Query: 189 MEKAMKRDNIETNDRQLACARINSN-----KNKA-FAKQFNTTPDDLDMHVIYDAFAKQF 242
+ KA+ + E LA +S KN+ + +F L M + AF +
Sbjct: 188 VAKALNKAAGEDISNDLAYLPESSEYFELYKNEMDYCLEFALANRKLMMERVKTAFRE-- 245
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
++ + HN A EEH +T+LVHRKG+TRA +IP
Sbjct: 246 --IRPEVGFSEFINKPHNFAAEEEHF----GETVLVHRKGATRARKGEWGMIP------- 292
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
G+ GT S+++ G KG ++F S HGAGR +SR ++R+ LD +E + L+ G
Sbjct: 293 ------GSQGTGSFLVKG--KGEAQSFESCAHGAGRIMSRTQARKKLDLEEEIQALDDLG 344
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + + ++EAP SYK++ +V++ H + + +L+P+AVIKG
Sbjct: 345 V-LHAIRGRKDLDEAPGSYKDIDEVMN--HQKDLVEVQIELQPLAVIKG 390
>gi|167947789|ref|ZP_02534863.1| hypothetical protein Epers_15082 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 106
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%)
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
+IGG+MGT SY+L G ++ + F S CHGAGRA+SR ++ + + V+ +LE++GI I
Sbjct: 1 IIGGSMGTESYILAGVKESEKLAFSSACHGAGRAMSRHQATKRWYGRNVIKELETRGILI 60
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
R S + V EEAP +YK+V+ VVD H G+S+K +L P+ + G
Sbjct: 61 RSPSLRGVAEEAPGAYKDVSRVVDVAHQAGLSRKVARLEPLICVNG 106
>gi|385873425|gb|AFI91945.1| RtcB protein [Pectobacterium sp. SCC3193]
Length = 466
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 139/327 (42%), Gaps = 76/327 (23%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T+G+GNH+ E+QIVD + D+ AA + G+++ G+V +MIH+GSR G V G
Sbjct: 216 TVGSGNHFVELQIVDAVLDRHAAYQAGVKE-GEVVIMIHTGSRDVGFYVGQRG------- 267
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D+ W A + SG G A D + M A + I +R
Sbjct: 268 -IDKARACWPAGEK----------YPASGLFGLVDGHAADYMEAMGVAARYAWI---NRI 313
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+ I S+ + F + + ++ D+SHNI
Sbjct: 314 VLTELIRSSWKQVFTRDTSK----------------------------LVVDLSHNIILP 345
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E M +HRKG+T A G+ LI G+MG SY++TG KG
Sbjct: 346 EHGMN--------LHRKGATPA-------------KAGEFALIPGSMGDYSYLVTG--KG 382
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+ S HGAGRA R R +D + + L Q I+++ + + EEAP +YK V
Sbjct: 383 DPDWLWSCSHGAGRAERRQSMRNKVDTAKQADALPWQCITLK---DERLREEAPAAYKPV 439
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+D G+ + +LRP K
Sbjct: 440 APVIDIQEQSGLIQPVARLRPWLTFKA 466
>gi|226315420|ref|YP_002775316.1| hypothetical protein BBR47_58350 [Brevibacillus brevis NBRC 100599]
gi|226098370|dbj|BAH46812.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 491
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 147/305 (48%), Gaps = 48/305 (15%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ EIQ+V +++ AS+ G+++ GQV +MIH+GS G+ + +M K M
Sbjct: 206 GGNHFFEIQVVKKVHQGSIASQWGLKE-GQVVLMIHTGSVSIGYHSGA-WIKEMLKKMYP 263
Query: 196 DNIETNDR---------------QLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAK 240
+++ D ++ + +++ N AFA + ++ K
Sbjct: 264 TSLKHPDNGMYPLPLSERSLPQWKMFWSLLHNAANFAFANRL----------MLGLMMYK 313
Query: 241 QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
+ D + ++YD HN E+ +Q +HRKGS A ++ +Q
Sbjct: 314 SISDVLGDFEHRLLYDAPHNYLWEEQL----EQVGGFLHRKGSCTAKSAEQ-MMGTPFQY 368
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA--------KSRRNLDYQ 352
TG+PV I G+MG+ S++L G G +++ S HGAGRALSR + R L
Sbjct: 369 TGEPVFIPGSMGSHSFILAGL--GNRDSLYSASHGAGRALSRGDAVKVDDDRFREFLANF 426
Query: 353 EVLNKLESQGISIRVAS------PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPV 406
V+N ++ + +R S + + +EAP +YK++T V+ + G+++ ++ P+
Sbjct: 427 RVINPIDPKRADLRGRSDILKKWEEELKKEAPYAYKDITPVIQSHVDHGMAEIVAEVAPI 486
Query: 407 AVIKG 411
A +KG
Sbjct: 487 ATVKG 491
>gi|261822976|ref|YP_003261082.1| hypothetical protein Pecwa_3740 [Pectobacterium wasabiae WPP163]
gi|261606989|gb|ACX89475.1| protein of unknown function UPF0027 [Pectobacterium wasabiae
WPP163]
Length = 466
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 139/327 (42%), Gaps = 76/327 (23%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T+G+GNH+ E+QIVD + D+ AA + G+++ G+V +MIH+GSR G V G
Sbjct: 216 TVGSGNHFVELQIVDAVLDRHAAYQAGVKE-GEVVIMIHTGSRDVGFYVGQRG------- 267
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D+ W A + SG G A D + M A + I +R
Sbjct: 268 -IDKARACWPAGEK----------YPASGLFGLVDGHAADYMEAMGVAARYAWI---NRI 313
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+ I S+ + F + + ++ D+SHNI
Sbjct: 314 VLTELIRSSWKQVFTRDTSK----------------------------LVVDLSHNIILP 345
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E M +HRKG+T A G+ LI G+MG SY++TG KG
Sbjct: 346 EHGMN--------LHRKGATPA-------------KAGEFALIPGSMGDYSYLVTG--KG 382
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+ S HGAGRA R R +D + + L Q I+++ + + EEAP +YK V
Sbjct: 383 DPDWLWSCSHGAGRAERRQSMRNKVDTAKQADALPWQCITLK---DERLREEAPAAYKPV 439
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+D G+ + +LRP K
Sbjct: 440 APVIDIQEQSGLIQPVARLRPWLTFKA 466
>gi|238231370|ref|NP_001154119.1| UPF0027 protein F16A11.2 [Oncorhynchus mykiss]
gi|225704178|gb|ACO07935.1| UPF0027 protein F16A11.2 [Oncorhynchus mykiss]
Length = 152
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VN+ LEKLM EELRN+C+ G GGFLP +KQI NVAALPGIV RS+GLPD H
Sbjct: 30 MQVEGVFYVNESLEKLMFEELRNACKGGGFGGFLPAMKQIGNVAALPGIVHRSIGLPDCH 89
Query: 61 S 61
S
Sbjct: 90 S 90
>gi|300114416|ref|YP_003760991.1| hypothetical protein Nwat_1815 [Nitrosococcus watsonii C-113]
gi|299540353|gb|ADJ28670.1| protein of unknown function UPF0027 [Nitrosococcus watsonii C-113]
Length = 396
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 137/285 (48%), Gaps = 42/285 (14%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ EIQ + G + +MIHSGSR G VA +
Sbjct: 150 YQIGTLGGGNHFIEIQKGSD---------------GYIWIMIHSGSRNIGFTVA-NHYDG 193
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQFNTTP 246
+ K M +D E ++LA S + + + N + + ++ + F
Sbjct: 194 VAKKMNQDAGEDVSQELAYIPETSAYFQLYWNEMNYCLEFALANRKLMMERAKLAFTEIL 253
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+++ + HN A E+H + ++VHRKG+TRA +IP
Sbjct: 254 PEVEFADFINKPHNFAAEEKHFGE----WVIVHRKGATRARKGEWGMIP----------- 298
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+ GT S+++ G KG ++F S HGAGR +SR K+R+ LD +E + L+ +GI +
Sbjct: 299 --GSQGTRSFLVKG--KGEAQSFESCAHGAGRIMSRTKARKTLDLKEEVKSLKDRGI-LH 353
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++EAP SYK++ +V+ + V + +L+P+AVIKG
Sbjct: 354 AIRHRKDLDEAPGSYKDIDEVM--ANQVDLVDVQIELQPLAVIKG 396
>gi|443722953|gb|ELU11594.1| hypothetical protein CAPTEDRAFT_212641 [Capitella teleta]
Length = 129
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG+F+VN++LE+LM +ELR R G GGFLPG+KQI NVA+LPGIVG+SVGLPDVH
Sbjct: 30 MNVEGIFYVNENLERLMFDELRQHTRTGGFGGFLPGMKQIGNVASLPGIVGKSVGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
>gi|398814819|ref|ZP_10573497.1| hypothetical protein PMI05_01917 [Brevibacillus sp. BC25]
gi|398035907|gb|EJL29133.1| hypothetical protein PMI05_01917 [Brevibacillus sp. BC25]
Length = 491
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 147/305 (48%), Gaps = 48/305 (15%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+ EIQ+V +++ AS+ G+++ GQV +MIH+GS G+ + +M K M
Sbjct: 206 GGNHFFEIQVVKKVHQGSIASQWGLKE-GQVVLMIHTGSVSIGYNSGA-WIKEMLKKMYP 263
Query: 196 DNIETNDR---------------QLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAK 240
+++ D ++ + +++ N AFA + ++ K
Sbjct: 264 TSLKHPDNGMYPLPLSERSLPQWKMFWSLLHNAANFAFANRL----------MLGLMMYK 313
Query: 241 QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
+ D + ++YD HN E+ +Q +HRKGS A ++ +Q
Sbjct: 314 SISDVLGDFEHRLLYDAPHNYLWEEQL----EQVGGFLHRKGSCTAKSAEQ-MMGTPFQY 368
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA--------KSRRNLDYQ 352
TG+PV I G+MG+ S++L G G +++ S HGAGRALSR + R L
Sbjct: 369 TGEPVFIPGSMGSHSFILAGL--GNRDSLYSASHGAGRALSRGDAVKVDDDRFREFLANF 426
Query: 353 EVLNKLESQGISIRVAS------PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPV 406
V+N ++ + +R S + + +EAP +YK++T V+ + G+++ ++ P+
Sbjct: 427 RVINPIDPKRADLRGRSDILKKWEEELKKEAPYAYKDITPVIRSHVDHGMAEIVAEVAPI 486
Query: 407 AVIKG 411
A +KG
Sbjct: 487 ATVKG 491
>gi|406920583|gb|EKD58621.1| hypothetical protein ACD_56C00084G0003 [uncultured bacterium]
Length = 502
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 144/312 (46%), Gaps = 48/312 (15%)
Query: 133 VATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH------------- 179
+ AGNH+ ++ V ++ D A K+G++ GQ +M+H+GS G
Sbjct: 202 LGAAGNHFLDLMKVSDVIDSQMAEKLGVKK-GQYLLMVHTGSGILGQYTMYTHTAKKAEH 260
Query: 180 --QVATDALVQM------------------EKAMKRDNIETNDRQLACARINSNKNKAFA 219
Q AL +M + K D++ T D + ++ N +A A
Sbjct: 261 LSQAIMVALGKMTFKTSKKEVYQRMQEKIAKHMTKDDSLLTYDGEGEDGQLYMNA-RAAA 319
Query: 220 KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 279
F T + +H I A + +++M +IYD+ H E H K + VH
Sbjct: 320 SNFGTANRAVIIHNIAQACQEVLGR---EVEMDLIYDLPHISITQENHF----GKDVWVH 372
Query: 280 RKGSTRAF-PPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGR 338
R ++RA+ P P PV Y+ TG+PV I +M T +Y+ GT++ +E+F S HG G+
Sbjct: 373 RSNTSRAYGPAKMPDHPV-YKETGEPVFIPSSMATDAYICVGTDRN-EESFYSAPHGTGK 430
Query: 339 ALSRA-KSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGIS 397
+ KS + D E+ K++ +G+ + A +V+ + YKN+ V+ A GI
Sbjct: 431 GKNNGEKSVSSKD--ELFAKMQEKGVKLYNAQSSIVINQDSARYKNIDRVMKGVEANGIV 488
Query: 398 KKTFKLRPVAVI 409
K++PVAVI
Sbjct: 489 HVVAKMKPVAVI 500
>gi|428319032|ref|YP_007116914.1| protein of unknown function UPF0027 [Oscillatoria nigro-viridis PCC
7112]
gi|428242712|gb|AFZ08498.1| protein of unknown function UPF0027 [Oscillatoria nigro-viridis PCC
7112]
Length = 504
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 123/295 (41%), Gaps = 64/295 (21%)
Query: 138 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDN 197
NH+ EIQ+VDE+ DK A G+ GQ+ MIHSGSR G + M RD
Sbjct: 253 NHFVEIQVVDEVVDKATAYTWGVRS-GQIAFMIHSGSRNVGKYIG---------GMWRDR 302
Query: 198 IETNDRQLAC----ARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFN---------- 243
AC + K++ F P+ + ++ +A A +
Sbjct: 303 --------ACEAWATTLKHPKSRLFPLSVAANPELVSSYLQAEATAANYGFINRLLLAEL 354
Query: 244 ------TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
D++ ++YD+ HNI E V RKG A P H
Sbjct: 355 LRLRLRQVFGDVEAPLVYDLPHNITLAE--------GAGWVTRKG---ACPAH------- 396
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAK-SRRNLDYQEVLN 356
TGQPV++ G+MG SY+L G KG S HGAGRA SR SR+ +D + +
Sbjct: 397 ---TGQPVIVPGSMGAPSYLLIG--KGNDRFLRSASHGAGRARSRFDMSRKGVDKTD--S 449
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L G+ + +EEAP +YK + V+D I KL+PV K
Sbjct: 450 TLGLIGVDCITLREERRIEEAPAAYKPIQPVIDVQVEAQIVGAVAKLKPVLTFKA 504
>gi|154417347|ref|XP_001581694.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915923|gb|EAY20708.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 365
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 14/157 (8%)
Query: 126 SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
+RG G Q+ T AGNHY E+Q VD+I D+ A M + + GQV VMIH+GSRG GHQVA
Sbjct: 214 TRGTG-QLGTVGAGNHYIEVQRVDKILDEEKARVMDLHE-GQVVVMIHTGSRGLGHQVAD 271
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA 237
+ + + ++++ D+QLA +S +++ + A F + MH + A
Sbjct: 272 ENMKVCSEKFVKESLP--DKQLAAPSFHSEESQKYLRAMYAAANFAWCNRQVIMHNVRRA 329
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 274
F+ F L+ H++YDV+HNIAK E+H +DG +K
Sbjct: 330 FSDVFKDR--KLETHLVYDVAHNIAKVEKHNIDGVEK 364
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
W E + + L + ++++IPVGVG K + L + + G W+L G+ ED ++
Sbjct: 134 WEEVEPVKKELVEKLYEYIPVGVGGKLDGVCDRDHLRDVMLKGAGWALENGFAVQEDIDN 193
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQV 547
CEE G + ADPS +S R RG Q+
Sbjct: 194 CEENGCLKGADPSLISDRTITRGTGQL 220
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G F+ + K +EL+N G LP + QI+ VA LPGI S G+ D+H
Sbjct: 33 MKVPGYFYSTPEMAKYAFDELQNWMSNRNQG--LPSILQISFVATLPGITKGSFGMLDMH 90
Query: 61 S 61
S
Sbjct: 91 S 91
>gi|440780195|ref|ZP_20958783.1| hypothetical protein F502_01430 [Clostridium pasteurianum DSM 525]
gi|440221871|gb|ELP61075.1| hypothetical protein F502_01430 [Clostridium pasteurianum DSM 525]
Length = 410
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 56/295 (18%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T GNH+ E+Q +E G + +M+HSGSR FG +V D +M
Sbjct: 157 QIGTLGGGNHFIELQEDEE---------------GNLGIMLHSGSRNFGRRVC-DHFNKM 200
Query: 190 EKAM--KRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD---------LDMHVIYDAF 238
+ + K + + +LA +++++ K + N D + +I + +
Sbjct: 201 ARELNEKWHSAVPLEYRLAFLPVDTDEGKRYIDWMNLALDFAYENREKMITAVTIIIEKW 260
Query: 239 AKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
+++ DL++ +++ HN A E H K + VHRKG+TRA
Sbjct: 261 LEKYT----DLNIEYTLEINCHHNYASLENHYC----KNVWVHRKGATRA---------- 302
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
G+ +I G MG+ SY++ G KG +E+F S+ HGAGR SR + +N +EV+N
Sbjct: 303 ---KQGELAVIPGAMGSYSYIVQG--KGNKESFCSSSHGAGRRYSRKAAMKNFTTEEVMN 357
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ GI + V EE+ +YKN+ +V+ + + KL+ V V+KG
Sbjct: 358 DLKKSGIILGKNKKNDVAEESRFAYKNIDEVM--LNQTDLVDPLKKLKTVGVVKG 410
>gi|162450226|ref|YP_001612593.1| hypothetical protein sce1954 [Sorangium cellulosum So ce56]
gi|161160808|emb|CAN92113.1| hypothetical protein sce1954 [Sorangium cellulosum So ce56]
Length = 520
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 132/304 (43%), Gaps = 49/304 (16%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ VDE+ D A G+ V +M H+GS G GH V + +A+
Sbjct: 237 GNHFVEIQAVDELVDGATARSFGLSK-NAVTIMAHAGSVGLGHAVG-GYFNERARALYPA 294
Query: 197 NI---------------ETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQ 241
+ ++ + + + N AFA + + + + + +
Sbjct: 295 GVPHPAHGFYVLPAVGPHAHEASVYLDAMRNAANFAFANRLFL--GLMVVRAMREVLGRH 352
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+T ++YD HN+ DG + L HRKG+T A P Y T
Sbjct: 353 VTST-------LVYDAPHNLIWEP----DGAEPRYL-HRKGATPAGGPDGEGGAFSY--T 398
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKS--------RRNLDYQE 353
G PV+I G+MG S+VL G S CHGAGR+L+R +S RR ++
Sbjct: 399 GDPVIIPGSMGDSSWVLAGAGHAALLA--SACHGAGRSLTRGRSAHADEDVYRRAVEKLH 456
Query: 354 VLNKLESQGISIRVASPKL------VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVA 407
V+ L+ +R L + EEAP +YK +T VV + GI+++ +L P+
Sbjct: 457 VVTPLDPDAPHVRRRRDILAKYHQRMKEEAPYAYKPITPVVRSVEEAGIARRVARLWPLV 516
Query: 408 VIKG 411
+KG
Sbjct: 517 TVKG 520
>gi|167945336|ref|ZP_02532410.1| hypothetical protein Epers_01970 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 145
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 168 VMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF--AKQFNTT 225
+ IH GSRG GHQ+ T+ L M K I DR+LACA I S +++ A +
Sbjct: 5 ISIHCGSRGLGHQIGTEFLKFMATKAKDHGIWLPDRELACAPIESKLGQSYLGAMRAGIN 64
Query: 226 PDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTR 285
+ ++ + + + ++YDVSHN K E H +DGK+K L VHRKG+T
Sbjct: 65 CALANRQILTHLTREVCDDVLPGTQLTLLYDVSHNTCKRETHRIDGKEKQLFVHRKGATL 124
Query: 286 AFPPHHPLIPVDYQLTGQPVL 306
A P HP +P + GQPV+
Sbjct: 125 ALGPGHPDLPDGLREVGQPVI 145
>gi|355674268|ref|ZP_09059532.1| hypothetical protein HMPREF9469_02569 [Clostridium citroniae
WAL-17108]
gi|354814069|gb|EHE98671.1| hypothetical protein HMPREF9469_02569 [Clostridium citroniae
WAL-17108]
Length = 411
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 136/294 (46%), Gaps = 47/294 (15%)
Query: 128 GFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDA 185
GF +Q+ T GNH+ E+Q DE G +CVMIHSGSR G V
Sbjct: 155 GF-YQIGTLGGGNHFIELQADDE---------------GYLCVMIHSGSRHIGKSVCDYF 198
Query: 186 LVQMEKAMKRDNIETNDR-QLACARINSNKNKAFAKQFNTTPDDLD-----MHVIYDAFA 239
+ + +R + D +LA +++ + + + + D M + +
Sbjct: 199 HFKARELNRRWYSDVPDEYRLAFLPVDTGEGRQYLNWMQLSMDFAKENREKMMLATKSVL 258
Query: 240 KQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
+++ DL++ +D++ HN A E H K + VHRKG+ RA
Sbjct: 259 EKYIGKYTDLELKFSHDINCHHNYAALEHHY----DKDVWVHRKGAVRAG---------- 304
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
G+ +I G MG+ SYV+ G KG E+F S+ HGAGR SR + +EV+
Sbjct: 305 ---NGELAVIPGAMGSYSYVVMG--KGNPESFCSSSHGAGRRYSRKGAMAAFSCEEVMVD 359
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ QG+ + V EE+ +YK++ +V++ + + K +LR + V+KG
Sbjct: 360 LQKQGVILGKKGKADVAEESRFAYKDIQEVMNNQLDLVVPVK--RLRTIGVVKG 411
>gi|326793232|ref|YP_004311053.1| hypothetical protein Clole_4183 [Clostridium lentocellum DSM 5427]
gi|326543996|gb|ADZ85855.1| protein of unknown function UPF0027 [Clostridium lentocellum DSM
5427]
Length = 411
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 134/292 (45%), Gaps = 48/292 (16%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ E Q +E G+V +MIH+GSR G ++ D Q
Sbjct: 157 YQIGTLGGGNHFIEFQEDEE---------------GKVGIMIHTGSRHLGKEIG-DYFNQ 200
Query: 189 MEKAMKRDNIET--NDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQFNT 244
+ K + + LA S++ + + + N D + + I +A K+ T
Sbjct: 201 IAKELNEKWYSSVPESYNLAFLPAKSDEGRLYLEYMNLALDFAEENREKILEAVMKEVTT 260
Query: 245 T-PDDLDMHVIY----DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
D+ V Y +V HN A E H + + VHRKG+ RA +IP
Sbjct: 261 LLKKQCDLDVTYANKINVHHNYAAMEIHY----GRNVWVHRKGAIRAGAGERGIIP---- 312
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
G+MG+ SY++ G KG E+F S HGAGR SR K++ ++V+ L+
Sbjct: 313 ---------GSMGSYSYIVEG--KGNAESFESCSHGAGRVYSRTKAKELYSVEKVMCDLK 361
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q + + + K V EE +YKN+ +V++ + + + KL+ + VIKG
Sbjct: 362 EQAVILGKNNKKDVAEECRFAYKNIDEVIE--NQLDLITPIKKLKTIGVIKG 411
>gi|333912611|ref|YP_004486343.1| hypothetical protein DelCs14_0952 [Delftia sp. Cs1-4]
gi|333742811|gb|AEF87988.1| protein of unknown function UPF0027 [Delftia sp. Cs1-4]
Length = 472
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 134/326 (41%), Gaps = 74/326 (22%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T+G+GNH+ E+Q+VDE+ D+ AA + G+ G V VMIHSGSR G V A
Sbjct: 220 TVGSGNHFVELQVVDEVLDRHAAYRAGLR-AGDVVVMIHSGSRDLGFYVGQA-------- 270
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D +W G++ SG G +A + L M A +
Sbjct: 271 WMDRARAEW---PQGVKHPA-------SGLYGLSGPLAGEYLQAMGVAAR---------- 310
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
A+A + V+ + K D ++ DV HN+
Sbjct: 311 -----------YAWANRV----------VLAELVRKDLEQIVGAADSRLVVDVPHNVVL- 348
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
+Q + +HRKG+T A LIP G+MG SY++TG G
Sbjct: 349 -------QQGGMNIHRKGATPANEGDFALIP-------------GSMGDASYLVTGL--G 386
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+ S HGAGR + R ++ R L + + QG + +EEAPE+YK +
Sbjct: 387 AADWLWSCSHGAGRRMRR-QAVRALRPEAHAGRAGEQGWQCVTLREERRIEEAPEAYKPI 445
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIK 410
V+++ A G+ KLRP K
Sbjct: 446 GPVIESQEAAGLIHAAVKLRPWITFK 471
>gi|160901079|ref|YP_001566661.1| hypothetical protein Daci_5648 [Delftia acidovorans SPH-1]
gi|160366663|gb|ABX38276.1| protein of unknown function UPF0027 [Delftia acidovorans SPH-1]
Length = 472
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 134/326 (41%), Gaps = 74/326 (22%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T+G+GNH+ E+Q+VDE+ D+ AA + G+ G V VMIHSGSR G V A
Sbjct: 220 TVGSGNHFVELQVVDEVLDRHAAYRAGLR-AGDVVVMIHSGSRDLGFYVGQA-------- 270
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D +W G++ SG G +A + L M A +
Sbjct: 271 WMDRARAEW---PQGVKHPA-------SGLYGLSGPLAGEYLQAMGVAAR---------- 310
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
A+A + V+ + K D ++ DV HN+
Sbjct: 311 -----------YAWANRV----------VLAELVRKDLEQIVGAADSRLVVDVPHNVVL- 348
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
+Q + +HRKG+T A LIP G+MG SY++TG G
Sbjct: 349 -------QQGGMNIHRKGATPANEGDFALIP-------------GSMGDASYLVTGL--G 386
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+ S HGAGR + R ++ R L + + QG + +EEAPE+YK +
Sbjct: 387 AADWLWSCSHGAGRRMRR-QAVRALRPEAHAGRAGEQGWQCVTLREERRIEEAPEAYKPI 445
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIK 410
V+++ A G+ KLRP K
Sbjct: 446 GPVIESQEAAGLIHAAVKLRPWITFK 471
>gi|124003948|ref|ZP_01688795.1| protein RtcB [Microscilla marina ATCC 23134]
gi|123990527|gb|EAY30007.1| protein RtcB [Microscilla marina ATCC 23134]
Length = 499
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 46/300 (15%)
Query: 99 DEIYDK--WAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAAS 156
D+++DK W +K+ I D+ + + GS G GNH+ E +D + D S
Sbjct: 202 DDLFDKPVWRETKV-IRDLKRKAIQ-QIGSSG-------TGNHFVEWGTIDILEDN---S 249
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
++G+ + ++ HSGSRGFG +A AM++ + + R LA +N+ + +
Sbjct: 250 ELGLPKGQYLALLSHSGSRGFGANIAGHY---TNIAMEKTKLPKHARHLAWLDLNTQEGQ 306
Query: 217 AFAKQFNTTPD--DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 274
+ N + + H I+ A+ T P L M + HN A + + DG +
Sbjct: 307 EYWIGMNLAGEYASANHHQIHKRMAQSLETQP--LKM---IENHHNFA-WRDQLADGTE- 359
Query: 275 TLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH 334
++VHRKG+T A +IP G+M Y++ G KG E S H
Sbjct: 360 -VIVHRKGATPAHENEWGIIP-------------GSMTAPGYLVQG--KGKAEAVFSASH 403
Query: 335 GAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAV 394
GAGR LSR ++++ LD +V L+ G+++ ++EAP +YKN+ +V+ A+
Sbjct: 404 GAGRQLSRNQAKKTLDEDDVQRVLKQNGVTLIGGD----LDEAPMAYKNIDEVMQMQQAL 459
>gi|70730945|ref|YP_260686.1| hypothetical protein PFL_3584 [Pseudomonas protegens Pf-5]
gi|68345244|gb|AAY92850.1| conserved hypothetical protein [Pseudomonas protegens Pf-5]
Length = 477
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 125/279 (44%), Gaps = 36/279 (12%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ+V E+ D+ A G+ VGQV +MIH+GSR G V + KA+
Sbjct: 229 GNHFVEIQVVTELVDRQACFAQGL-SVGQVVMMIHTGSRDVGFYVGRRWM-DKAKALWPA 286
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT-PDDLDMHVIY 255
I+ D ++ A D + +I + ++ ++ +I
Sbjct: 287 GIKHPDSKIFALFGEMADEYLLAMHSAAHYADANRALIAEMVRQRTRQVFGAGIEAPLIV 346
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
DV HNI EE G VHRKG+T A+ GQP+LI G+MG S
Sbjct: 347 DVPHNIVLREE---GGN-----VHRKGATPAY-------------AGQPLLIPGSMGHDS 385
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRA----KSRRNLDYQEVLNKLESQGISIRVASPK 371
Y+LTG G + S HGAGR++SR+ K+++ + L QG+ +
Sbjct: 386 YLLTGL--GNERWLRSASHGAGRSMSRSEVVFKAKKGKAF------LGLQGVECITTKEE 437
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
++EEAP +YK + V+ + G + P+ K
Sbjct: 438 RMIEEAPGAYKEIGQVIQSQVEEGTVSVIARFSPILTFK 476
>gi|295822063|gb|ADG36685.1| hypothetical protein [Odontobutis potamophila]
gi|295822065|gb|ADG36686.1| hypothetical protein [Micropercops swinhonis]
gi|295822067|gb|ADG36687.1| hypothetical protein [Rhinogobius giurinus]
gi|295822071|gb|ADG36689.1| hypothetical protein [Hypophthalmichthys nobilis]
Length = 67
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 44/47 (93%)
Query: 501 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EMG+DWSLREGY WAEDKEHCEEYGRML ADP+KVS +AKKRGLPQ+
Sbjct: 1 EMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQL 47
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 448 EMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSK 486
EMG+DWSLREGY WAEDKEH E + M P V SK
Sbjct: 1 EMGVDWSLREGYAWAEDKEHCEEYGR-MLQADPNKVSSK 38
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 19/19 (100%)
Query: 85 TLGAGNHYAEIQIVDEIYD 103
TLGAGNHYAEIQ+VDEIY+
Sbjct: 49 TLGAGNHYAEIQVVDEIYN 67
>gi|295822073|gb|ADG36690.1| hypothetical protein [Larimichthys crocea]
Length = 66
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 44/47 (93%)
Query: 501 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EMG+DWSLREGY WAEDKEHCEEYGRML ADP+KVS +AKKRGLPQ+
Sbjct: 1 EMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQL 47
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 448 EMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSK 486
EMG+DWSLREGY WAEDKEH E + M P V SK
Sbjct: 1 EMGVDWSLREGYAWAEDKEHCEEYGR-MLQADPNKVSSK 38
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 18/18 (100%)
Query: 85 TLGAGNHYAEIQIVDEIY 102
TLGAGNHYAEIQ+VDEIY
Sbjct: 49 TLGAGNHYAEIQVVDEIY 66
>gi|290473553|ref|YP_003466423.1| PLP-dependent transferase [Xenorhabdus bovienii SS-2004]
gi|289172856|emb|CBJ79627.1| putative PLP-dependent transferase [Xenorhabdus bovienii SS-2004]
Length = 466
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 143/327 (43%), Gaps = 76/327 (23%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T+G+GNH+ E+QIVD I D+ AA G+ + G+V +MIH+GSR G + G +
Sbjct: 216 TVGSGNHFVELQIVDTILDRHAAYAAGLHE-GEVLMMIHTGSRDVGFYI---GQRW---- 267
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
VD+ W + SG G + A + + M
Sbjct: 268 -VDKARALWPVT----------AKYPSSGLFGLTDEHAQEYFLAM--------------- 301
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
CA A+A + T ++ A+ + F L I D+SHNI
Sbjct: 302 -GCA-----ARYAWANRIVLT------ELVRAAWKQIFGQDKSKL----IVDLSHNIIFP 345
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E+ M +HRKG+T A G+ LI G+MG SY++ G KG
Sbjct: 346 EQGMN--------LHRKGATPA-------------RAGELALIPGSMGDYSYLVLG--KG 382
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
++ S HGAGR++ R R + + ++L Q I+++ S +L EEAPE+YK +
Sbjct: 383 NEDWLWSCSHGAGRSIRRQAMRNKVPDLQKNSRLPWQCITLK--SDRL-REEAPEAYKPI 439
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
T V++ G+ + ++RP K
Sbjct: 440 TPVIEIQEQAGLIQPVARVRPWITFKA 466
>gi|414154441|ref|ZP_11410760.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411454232|emb|CCO08664.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 402
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 135/327 (41%), Gaps = 81/327 (24%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ ++ VC+M+HSGSR FG Q+A NH A+
Sbjct: 157 TLGGGNHFIEIQ---------------ADERDMVCIMLHSGSRNFGWQIAKHFNHLAKTL 201
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+ +W D+ + + S + G + V D +Q +E R
Sbjct: 202 NI-----RWQQPDPVTYDLAFLPL---SSTEGNSYMVWMDLALQFA-------MENRHRM 246
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+ + D L H F++ N HN A
Sbjct: 247 M-----------------DIVMDILQKHRPAVTFSRFINA-------------HHNYAAL 276
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H G+Q ++VHRKG+ RA G+P ++ G MGT SY++ G G
Sbjct: 277 EHHF--GRQ--VVVHRKGAIRA-------------RRGEPGIVPGAMGTASYIVEGL--G 317
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+F S HGAGR +SR K+ + Q+ + L+ G+ + V EE+ +YK++
Sbjct: 318 NAASFHSCSHGAGRIMSRKKATATIPVQKTMEDLQQLGVVLGKHKKSDVSEESRFAYKDI 377
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+ + K KLR +AV+KG
Sbjct: 378 EYVIS--QQRDLIKPVKKLRTLAVVKG 402
>gi|296122742|ref|YP_003630520.1| hypothetical protein Plim_2495 [Planctomyces limnophilus DSM 3776]
gi|296015082|gb|ADG68321.1| protein of unknown function UPF0027 [Planctomyces limnophilus DSM
3776]
Length = 514
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 137/308 (44%), Gaps = 56/308 (18%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ +D+I+DK A G++ G V VM+H+GS GH RD
Sbjct: 230 GNHFVEIQRIDKIHDKAVAHAWGLKP-GMVTVMVHTGSVSIGHFCG---------GYYRD 279
Query: 197 NIETNDRQLACARINSNKNKAF----AKQFNTTP----DDLDMHVIYDAFAKQF------ 242
+ R + A + N F + T D L+ + + F
Sbjct: 280 KV----RAIHPAGLKHPDNGIFILPTGEAHRETAELFWDTLNNAANFAFANRMFLAIMAL 335
Query: 243 ---NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGS--TRAFPPHHPLIPVD 297
D ++YD HN+ EE DG + +++HRKG+ R F P
Sbjct: 336 DCLRQVVGKADFPLLYDAPHNLVWKEER--DGAE--VVLHRKGACPARGFEAMEG-TPFA 390
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRN--------L 349
YQ G+PVL+ G+MG S++L G +G + S HGAGR LSR + + L
Sbjct: 391 YQ--GEPVLVPGSMGANSFILVG--QGNAASLSSASHGAGRTLSRGDAMKGHHAEFEAFL 446
Query: 350 DYQEVLNKLESQGISIR----VASPKL--VMEEAPESYKNVTDVVDTCHAVGISKKTFKL 403
++ ++ + IR + KL + +EAP ++K + VV+T A GI++ ++
Sbjct: 447 KAFRIVTPVDLRRPEIRQRRDILEAKLADIKQEAPFAFKGIAPVVETLTAAGIARPVAEV 506
Query: 404 RPVAVIKG 411
P+ +KG
Sbjct: 507 IPLMTVKG 514
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 131
++G GNH+ EIQ +D+I+DK A G++ G V VM+H+GS GH
Sbjct: 226 SIGGGNHFVEIQRIDKIHDKAVAHAWGLKP-GMVTVMVHTGSVSIGH 271
>gi|366165206|ref|ZP_09464961.1| hypothetical protein AcelC_16160 [Acetivibrio cellulolyticus CD2]
Length = 367
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 166/386 (43%), Gaps = 48/386 (12%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR---SPLTLGAGNHY 92
V Q+ ++ LPG+V ++VGLPD+H P + + I+ + + G
Sbjct: 18 AVNQLNQISTLPGVV-KAVGLPDLH--PGKTPVGATIITEGIIYPHLIGNDIGCGMSMFA 74
Query: 93 AEIQIVDEIYDKWAASKMGIEDVGQVCV----MIHSGSRGFGHQVAT--AGNHYAEIQIV 146
+I+ D+ I+++ ++ + + S G + T GNH+AE Q V
Sbjct: 75 TDIEKRKLKIDRMVKKAEDIQNLKEIPLPESEETNQTSSPLGASLGTIGGGNHFAEFQEV 134
Query: 147 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLA 206
D I+++ A + +G D ++ ++IHSGSRG+G + D + + N + + A
Sbjct: 135 DTIFEEKAFNSLGF-DKNRITLLIHSGSRGYGQAILDDCI----RIHSAQNGLSQSSEAA 189
Query: 207 CARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 266
++ + N + N L + + A +T D L D HN ++
Sbjct: 190 AEYLSKHDNAVYWASLNR---KLIAYRLLKALG--ISTQADRL-----IDCCHNSVSIKK 239
Query: 267 HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQ 326
K +HRKGS +P D V+I G+ G+ +Y++ T+
Sbjct: 240 ----SDDKLQYLHRKGS----------LPTD----KGAVVIPGSRGSLTYLVMPTDATCV 281
Query: 327 ETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEEAPESYKNV 384
+ S HGAGR R+ R L+ + ++S + RV KL+ EEAPE+YKN+
Sbjct: 282 SGY-SLAHGAGRKWERSLCRSRLESKYTKESIKSTKLKGRVVCDDTKLLFEEAPEAYKNI 340
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ + G+ +P+ K
Sbjct: 341 DIVIQSLIDFGLISIIATFKPLLTYK 366
>gi|160941636|ref|ZP_02088965.1| hypothetical protein CLOBOL_06534 [Clostridium bolteae ATCC
BAA-613]
gi|158435444|gb|EDP13211.1| hypothetical protein CLOBOL_06534 [Clostridium bolteae ATCC
BAA-613]
Length = 411
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 48/292 (16%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ E+Q D+ G + VMIHSGSR FG V D
Sbjct: 157 YQIGTLGGGNHFIELQEDDD---------------GYLAVMIHSGSRHFGKSVC-DYFHY 200
Query: 189 MEKAMKRDNIET--NDRQLACARINSNKNKAFAKQFNTTPDDLD-----MHVIYDAFAKQ 241
+ + + ++ +LA +++ + K + + D M + A ++
Sbjct: 201 KARQLNQKWFSAVPDEYRLAFLPVDTREGKQYLNWMQLSMDFAKENREKMMLAVKAILEK 260
Query: 242 FNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+ +L + +D++ HN A E H K + VHRKG+ A
Sbjct: 261 WIGKYTELSLEFSHDINCHHNYASFENHY----GKDVWVHRKGAVSA------------- 303
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
G+ +I G MG+ SYV+ G KG QE+F S+ HGAGR SR + +EV+ L+
Sbjct: 304 QNGELAVIPGAMGSYSYVVMG--KGNQESFCSSSHGAGRQYSRKGAMAAFSCEEVILDLQ 361
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QG+ + V EE+ +YKN+ +V+D + + K +L+ + V+KG
Sbjct: 362 KQGVILGKKGKADVAEESRFAYKNIEEVMDNQQDLVVPVK--RLKTIGVVKG 411
>gi|225420117|ref|ZP_03762420.1| hypothetical protein CLOSTASPAR_06460 [Clostridium asparagiforme
DSM 15981]
gi|225041247|gb|EEG51493.1| hypothetical protein CLOSTASPAR_06460 [Clostridium asparagiforme
DSM 15981]
Length = 491
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 133/291 (45%), Gaps = 46/291 (15%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ E+Q D+ G + VMIHSGSR FG V +
Sbjct: 237 YQIGTLGGGNHFIELQESDD---------------GFLTVMIHSGSRHFGKSVCDYFHFK 281
Query: 189 MEKAMKRDNIETNDR-QLACARINSNKNKAFAKQFNTTPDDLD-----MHVIYDAFAKQF 242
+ KR + D +LA +S++ K + N + D M + A +++
Sbjct: 282 ARELNKRWYSQVPDEYRLAFLPTDSSEGKRYLDWMNLSMDFAKENREKMMLAVKAILEKW 341
Query: 243 NTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
D ++ D++ HN A E H K + VHRKG+ RA
Sbjct: 342 IGKYTDFELTFSGDINCHHNYAALENHY----DKNVWVHRKGAVRA-------------R 384
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
G+ +I G MG+ SYV+ G KG E+F S+ HGAGR SR + ++V+ L +
Sbjct: 385 NGELAVIPGAMGSYSYVVMG--KGNPESFCSSSHGAGRRYSRKGAMSAFSCEQVIQDLNT 442
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QG+ + + V EE+ +YK++ V++ + + K +L+ + V+KG
Sbjct: 443 QGVVLGKKNKSDVAEESRFAYKDIETVMNDQTDLVVPVK--RLKTIGVVKG 491
>gi|326789648|ref|YP_004307469.1| release factor H-coupled RctB family protein [Clostridium
lentocellum DSM 5427]
gi|326540412|gb|ADZ82271.1| release factor H-coupled RctB family protein [Clostridium
lentocellum DSM 5427]
Length = 368
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 163/385 (42%), Gaps = 62/385 (16%)
Query: 39 QIANVAALPGIVGRSVGLPDVHSVPS---TQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
Q+ V+ L ++ R VGLPD+H+ S LS N I + + G G +
Sbjct: 23 QLVGVSQLKDVI-RVVGLPDLHAGKSPIGIALLSQNRFYPHLI--GNDIGCGMGLFETAV 79
Query: 96 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGN--HYAEIQIVDEIYDKW 153
++ DKW I + + +M ++ T GN H+AE Q + E+ +K
Sbjct: 80 KLKKYKQDKWVTRLSNIRQLSDLWIMNPYEEESPILELGTIGNGNHFAEFQCIHEVVNKD 139
Query: 154 AASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDN-----IETNDRQLACA 208
++G+E +V +++HSGSRG+G ++ A ++ E +K + +E +++ L A
Sbjct: 140 LYEQLGLEK-DKVFLLVHSGSRGYGEKILR-AHLKPEGILKNSDEAVTYLEEHEKALIWA 197
Query: 209 RINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
R +N+ + K + ++ + D HN E
Sbjct: 198 R----RNRELVAK------------------KLLGHLGVNDEIVTVIDCYHNFL---EET 232
Query: 269 VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQET 328
+G +HRKG+T + P++I G+ G+ SY+ E +
Sbjct: 233 SEG-----FIHRKGTTSS--------------KVGPIVIPGSRGSLSYICMPKED-TSLS 272
Query: 329 FGSTCHGAGRALSRA--KSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTD 386
S HGAGR +R+ KSR N Y + + L+ +EAPE+YKN+
Sbjct: 273 LDSLSHGAGRKWARSLCKSRINNKYDRDSIRCTELKSKVVCHDTNLLFQEAPEAYKNIEQ 332
Query: 387 VVDTCHAVGISKKTFKLRPVAVIKG 411
V+D+ G+ + LRP+ KG
Sbjct: 333 VIDSLMKFGLIEVVATLRPLITYKG 357
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 27 PGMVGGFLP-GVKQIANVAALPGIVGRSVGL--------PDVHSVPSTQWLS--DNTMRS 75
P + G P G+ ++ P ++G +G + +W++ N +
Sbjct: 40 PDLHAGKSPIGIALLSQNRFYPHLIGNDIGCGMGLFETAVKLKKYKQDKWVTRLSNIRQL 99
Query: 76 SNIWKRSPL----------TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 125
S++W +P T+G GNH+AE Q + E+ +K ++G+E +V +++HSG
Sbjct: 100 SDLWIMNPYEEESPILELGTIGNGNHFAEFQCIHEVVNKDLYEQLGLEK-DKVFLLVHSG 158
Query: 126 SRGFGHQVATA 136
SRG+G ++ A
Sbjct: 159 SRGYGEKILRA 169
>gi|239624209|ref|ZP_04667240.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520595|gb|EEQ60461.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 408
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 47/294 (15%)
Query: 128 GFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDA 185
GF +Q+ T GNH+ E+Q +E G +CVMIHSGSR G V
Sbjct: 152 GF-YQIGTLGGGNHFIELQEDNE---------------GYLCVMIHSGSRHIGKSVCDYF 195
Query: 186 LVQMEKAMKRDNIETNDR-QLACARINSNKNKAFAKQFNTTPDDL-----DMHVIYDAFA 239
+ + +R + + D +LA +S++ K + + D M + A
Sbjct: 196 HNKARELNRRWHSDVPDEYRLAFLPTDSHEGKQYLNWMQLSMDFARENREKMMLAVKAVL 255
Query: 240 KQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
+++ D ++ D++ HN A E H K + VHRKG+ RA
Sbjct: 256 EKYIGKYTDFNLEFSGDINCHHNYAALEHHY----DKDVWVHRKGAVRAG---------- 301
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
G+ +I G MG+ SYV+ G KG E+F S+ HGAGR SR + +EV+
Sbjct: 302 ---NGEMAVIPGAMGSYSYVVMG--KGNPESFCSSSHGAGRRYSRKGAMAAFSCEEVILD 356
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ QG+ + V EE+ +YK++ +V+D + + K +L+ + V+KG
Sbjct: 357 LQKQGVILGKKGKADVAEESRFAYKDIEEVMDCQQDLVVPVK--RLKTIGVVKG 408
>gi|297569020|ref|YP_003690364.1| protein of unknown function UPF0027 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924935|gb|ADH85745.1| protein of unknown function UPF0027 [Desulfurivibrio alkaliphilus
AHT2]
Length = 392
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 139/298 (46%), Gaps = 65/298 (21%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ EIQ + G + +M+HSGSR G +VA
Sbjct: 143 YQLGTLGGGNHFIEIQRGSD---------------GHIWLMVHSGSRNLGFKVAN----Y 183
Query: 189 MEKAMKRDNIETNDR-----QLACARINSNKNKAF--AKQ----FNTTPDDLDM----HV 233
+ + N E N + QLA +S +++ A Q F DL +
Sbjct: 184 FNRLAIKLNREQNSKVPTNWQLAYLTADSPAGRSYLLAMQYCVDFAYANRDLMLTRIKET 243
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
I + Q P + +++HN A EEH + ++VHRKG+TRA
Sbjct: 244 IREILGPQVTFAP-------MINIAHNYAALEEHY----GQKVIVHRKGATRA------- 285
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
L G+ +I G+ GT SY++ G G E+F S HGAGR + R +++R L+ +E
Sbjct: 286 ------LAGEIGIIPGSQGTPSYLVRGL--GNPESFQSCSHGAGRKMGRKQAQRQLNLEE 337
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+L+++GI I K ++EA +YK + V++ + + + + +L P+AVIKG
Sbjct: 338 EKKRLDARGI-IHAIRSKGDLDEAAGAYKEIDQVIE--NQLDLVEVLVELHPLAVIKG 392
>gi|423106790|ref|ZP_17094485.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5243]
gi|376388916|gb|EHT01608.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5243]
Length = 379
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 168/397 (42%), Gaps = 74/397 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S + + +G G +
Sbjct: 27 IQQLHTTANLPHMQ-RVVGMPDLH--PGRGYPIGAVFFSLGHLYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVC---------VMIHSGSRGFGHQVATAGNHYAEI 143
I+ Y DK+ +EDV Q ++ H G GNH+AE+
Sbjct: 84 TDILARKYNADKFEKKLSAMEDVAQASWLDEHLPEHLLTHPWRSALGS--IGGGNHFAEL 141
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV--------ATDALVQMEKAMKR 195
Q V+++ D + G+ D ++ ++ HSGSRG G + + D L + A R
Sbjct: 142 QQVEQVVDNDRFQQAGL-DAQRLLLLAHSGSRGLGQSILQRHIAAFSHDGLAE-GSAAAR 199
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIY 255
D + +D LA AR+N ++I +Q D +
Sbjct: 200 DYLAEHDDALAFARVNR-------------------YLIATRILQQIRA-----DGRSVL 235
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
D++HN E VDG Q L HRKG+T P D L V+I G+ G S
Sbjct: 236 DIAHNF--VESCSVDGLQGWL--HRKGAT----------PDDRGL----VIIPGSRGDHS 277
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLV 373
+++ + +ET S HGAGR R + + L + +L + RV +L+
Sbjct: 278 WLVQPVTR--EETLHSLAHGAGRKWMRTECKGRLSGKYTPAQLARTELGSRVICRDRQLI 335
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+V V++ G+ + +LRP+ +K
Sbjct: 336 YEEAPQAYKSVESVLNCLVQAGLVEPIARLRPLLTLK 372
>gi|441506783|ref|ZP_20988718.1| Protein RtcB [Photobacterium sp. AK15]
gi|441425542|gb|ELR63069.1| Protein RtcB [Photobacterium sp. AK15]
Length = 398
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 174/407 (42%), Gaps = 71/407 (17%)
Query: 38 KQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQI 97
+Q+ A+LP I G+PDVH S + I + +G G + + +
Sbjct: 30 EQLRRTASLPFIFHHVAGMPDVHLGKGATIGSVIATVKAIIPAAVGVDIGCGINAVRLSL 89
Query: 98 -VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIY------ 150
++ D + IEDV I G G H VA + + +++IY
Sbjct: 90 NASQLPDNLREIRHAIEDV------IPLGP-GQEHSVAKINRNSPLAKGLEKIYHVNPGL 142
Query: 151 ------DKWA--ASKMG---------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
D+WA A +G +++ + VM+HSGSRG G+ + + Q ++ M
Sbjct: 143 KKMVKPDRWAYQAGTLGGGNHFFELCLDEADNLWVMLHSGSRGIGNAIGRYFISQAKQDM 202
Query: 194 KRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNT 244
+R NI D+ LA S + A+++ +L M + + QF
Sbjct: 203 ERHNIHLPDKDLAYFEEGSKNYHGYIQGVEWAQEYARINRELMMKAALEVLVNYLPQFEI 262
Query: 245 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
T + ++ H HN + E H + + + RKG+ RA + G
Sbjct: 263 TQEAINCH------HNYIEREMHF----GQEVWLTRKGAIRA-------------MKGDL 299
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
+I G+MG S+++ G G E+F S HGAGR LSR ++++ Q + L +Q +
Sbjct: 300 GVIPGSMGASSFIVRGL--GNPESFFSCSHGAGRRLSRTQAKK----QYTVKDLIAQTVG 353
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ K V++E P++YK++ V++ + + + LR + IKG
Sbjct: 354 VECRKDKGVLDELPKAYKDIDKVME--NQIDLVDIVHTLRQIVNIKG 398
>gi|327398940|ref|YP_004339809.1| hypothetical protein Hipma_0780 [Hippea maritima DSM 10411]
gi|327181569|gb|AEA33750.1| protein of unknown function UPF0027 [Hippea maritima DSM 10411]
Length = 391
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 122/252 (48%), Gaps = 26/252 (10%)
Query: 164 GQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDR-QLACARINSNKNKAFAKQF 222
G + +MIHSGSR G QVA +K +R + +L S + + + ++
Sbjct: 162 GFIWIMIHSGSRNLGKQVADYYHRLAKKLNERMGYPVPESYELFFLSTKSQEGQMYLEEM 221
Query: 223 NTTPD--DLDMHVIYDAFAKQFNTTPDDLDMHVI-YDVSHNIAKTEEHMVDGKQKTLLVH 279
N + +++ T D+ + +DV HN A E+H K + VH
Sbjct: 222 NFCIGYAKANRNLMAKRIIGITETVLSKRDIVIEEHDVIHNYASLEKHF----SKKVWVH 277
Query: 280 RKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRA 339
RKG+T+A G +I G+ G+ SY+ G G +E+F S HGAGR
Sbjct: 278 RKGATKAS-------------EGDICIILGSQGSESYIAIGL--GNEESFKSCSHGAGRI 322
Query: 340 LSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKK 399
LSR K+R++L + KL GI I + K ++EAP +YK+++ V+ + + + K
Sbjct: 323 LSRHKARKSLSLANEIKKLNKLGI-IHSLNSKRDLDEAPGAYKDISKVIQ--NQLDLIKP 379
Query: 400 TFKLRPVAVIKG 411
+LRP+AVIKG
Sbjct: 380 IIQLRPLAVIKG 391
>gi|406890037|gb|EKD36051.1| protein of unknown function UPF0027, partial [uncultured bacterium]
Length = 163
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 92/160 (57%), Gaps = 26/160 (16%)
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+ +++HN A EEH K ++VHRKG+TRA ++P G+ GT
Sbjct: 28 MINIAHNYAAMEEHF----GKNVIVHRKGATRAQAGEIGIVP-------------GSQGT 70
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI--SIRVASPK 371
SY++ G KG +E+F S HGAGR + R +++R LD + +L+ QGI +IR S
Sbjct: 71 PSYIVRG--KGNKESFESCAHGAGRKMGRKQAQRQLDLAQEKKRLDEQGIIHAIRSVSD- 127
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EEA +YK++ +V+D + + + + +LRP+AV+KG
Sbjct: 128 --LEEAAGAYKDIDEVID--NQLDLVEVLVELRPLAVVKG 163
>gi|94263171|ref|ZP_01286989.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
gi|94265106|ref|ZP_01288872.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
gi|93454436|gb|EAT04731.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
gi|93456542|gb|EAT06656.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
Length = 391
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 137/292 (46%), Gaps = 46/292 (15%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT- 183
R +Q+ T GNH+ EIQ + G + +M+HSGSR G +VA
Sbjct: 139 RNARYQLGTLGGGNHFIEIQRGSD---------------GHIWLMVHSGSRNLGFKVANY 183
Query: 184 --DALVQMEKAMKRDNIETNDRQLACARINS--NKNKAFAKQFNTTPDDLDMHVIYDAFA 239
+Q+ + K + N QLA ++S ++ A Q+ + ++
Sbjct: 184 FNRLAIQLNREQK-SKVPAN-WQLAYLPVDSPVGRDYLLAMQYCVDFAYANRDLMLARIR 241
Query: 240 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+ + + +++HN A EEH + ++VHRKG+TRA
Sbjct: 242 ETLQEVLGPVTFAPMINIAHNYAALEEHY----GQKVIVHRKGATRA------------- 284
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
L G+ +I G+ GT SY++ G G E+F S HGAGR + R +++R L ++ +L+
Sbjct: 285 LAGEIGIIPGSQGTPSYLVRGL--GNPESFHSCSHGAGRKMGRKQAQRQLSLEDEKGRLD 342
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QGI I K ++EA +YK + V++ + + + + +L P+AVIKG
Sbjct: 343 RQGI-IHAVRSKGDLDEAAGAYKEIDQVIE--NQLDLVEVLVELHPMAVIKG 391
>gi|223935757|ref|ZP_03627673.1| release factor H-coupled RctB family protein [bacterium Ellin514]
gi|223895765|gb|EEF62210.1| release factor H-coupled RctB family protein [bacterium Ellin514]
Length = 374
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 172/394 (43%), Gaps = 67/394 (17%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPS----TQWLSDNTMRSSNIWKRSPLTLGAGNHY 92
V Q+ A LPG+ +VG PD+H ++S T+ I + + G G
Sbjct: 23 VDQLKRTAELPGMR-LAVGFPDLHPGKGHPVGAAFVSSGTIYPYLI--GNDIGCGMGFWQ 79
Query: 93 AEIQIVDEIYDKWAASKMGIE-----DVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQI 145
++ D+WA +E DVG+ + H + T GNH+AE+Q
Sbjct: 80 TDLLRRKAKLDRWAGRLSDLENPWEGDVGEWLQRAELPTTHSDHSLGTIGGGNHFAELQA 139
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT-------DALVQMEKAMKRDNI 198
V+++ D+ +K+ + ++ +++HSGSRG G + DA V +E +D +
Sbjct: 140 VEKVEDETEFAKLNLSKE-KLMLLVHSGSRGLGESILRAYVDQHRDAGVAVESTDAKDYL 198
Query: 199 ETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
+ +D + A+ N + +I FA N ++ + D S
Sbjct: 199 QKHDEAVRWAKANRS-------------------LIAHRFASVLNAACEN-----VVDGS 234
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HN H + G+ T+ +HRKG+ A TG P++I G+ GT SY++
Sbjct: 235 HN--SITRHELAGE--TVWLHRKGAAPAE-------------TG-PMIIPGSRGTVSYLV 276
Query: 319 TGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEE 376
T + S HGAGR +R++S+ + + ++L + RV + L+ EE
Sbjct: 277 LPTGD-LPAAAWSLAHGAGRKWTRSESKSRIRDRYRPDELSQTELGSRVICENRDLLYEE 335
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
AP++YK + V+ T G+ + LRP+ K
Sbjct: 336 APDAYKKIEVVIKTLVDEGLIRVIASLRPLITYK 369
>gi|221066896|ref|ZP_03543001.1| protein of unknown function UPF0027 [Comamonas testosteroni KF-1]
gi|220711919|gb|EED67287.1| protein of unknown function UPF0027 [Comamonas testosteroni KF-1]
Length = 492
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 43/282 (15%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD----ALVQMEK 191
+GNH+ E +VDEI+D+ AA G++ G V VMIH+GSR G V A Q +
Sbjct: 248 SGNHFLEFCVVDEIFDRHAAYAAGLKK-GDVTVMIHTGSRDVGFYVGRRWMDLARQQWPQ 306
Query: 192 AMK--RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+K R + LA + + A FN + + K+
Sbjct: 307 GIKHPRHGLYGLSGALAQDYLQAMGVAARYAWFNRM-------ALAELVRKELEDIAAPD 359
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+I DV HN+ TE VHRKGST P H GQ LI G
Sbjct: 360 ASRLIVDVPHNVVMTEGEFN--------VHRKGST---PAH----------DGQWALIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG S+++ G G ++ S HGAGR + R +RR ++ L + Q I++R
Sbjct: 399 SMGDYSFLVKGL--GHEDWLQSCSHGAGRQVRRQDTRR---MKQPLIESMWQCITLR--- 450
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++EEAP +YK V V+ G+ + + KL+P K
Sbjct: 451 EERLIEEAPSAYKPVGPVLQAQEEAGLIRASLKLKPWLTFKA 492
>gi|359425742|ref|ZP_09216836.1| hypothetical protein GOAMR_52_00150 [Gordonia amarae NBRC 15530]
gi|358238909|dbj|GAB06418.1| hypothetical protein GOAMR_52_00150 [Gordonia amarae NBRC 15530]
Length = 398
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 140/303 (46%), Gaps = 58/303 (19%)
Query: 122 IHSGSRGF----GHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSR 175
+H G R G Q+ T GNH+AE+ + DE G V +M+HSGSR
Sbjct: 141 LHRGVRQLDTRAGRQLGTLGGGNHFAEVCLDDE---------------GAVWIMLHSGSR 185
Query: 176 GFGHQVATDALVQMEKAMKR-DNIETNDRQLACARINSNKNKAF------AKQFNTTPDD 228
G ++A M A K N + DR LA + + A+ A+++
Sbjct: 186 NIGKELAER---HMSVAAKLPHNADLPDRDLAVFLTGTPEMDAYRHDLDWAQEYAARNRQ 242
Query: 229 LDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP 288
+ + +I +A F T D + HN TE +DG + LLV RKG+ RA
Sbjct: 243 VMLALICNAIRDSFPTRAVRFDDPI--SCHHNYVATE--TIDGLE--LLVTRKGAIRAGA 296
Query: 289 PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRN 348
LIP G+MGT SYV+ G G +++F S HGAGR +SR+K+R+
Sbjct: 297 GDLGLIP-------------GSMGTGSYVVRGL--GSEQSFFSASHGAGRRMSRSKARKL 341
Query: 349 LDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAV 408
++++ ++QG+ R + V++E P +YK++ +V+ + + LR V
Sbjct: 342 FTEEDLIA--QTQGVESR--KDRGVVDEIPAAYKDINEVI--AAQTDLVEVVAHLRQVVC 395
Query: 409 IKG 411
+KG
Sbjct: 396 VKG 398
>gi|429086737|ref|ZP_19149469.1| Protein with similarity to RtcB [Cronobacter universalis NCTC 9529]
gi|426506540|emb|CCK14581.1| Protein with similarity to RtcB [Cronobacter universalis NCTC 9529]
Length = 379
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 120/276 (43%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ L + D
Sbjct: 135 GNHFAELQQIDSVYDDEAIAALGIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHD 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+E ++ + FA + +I T + + D
Sbjct: 190 GLEAGSKEAGEYLAQHQQALDFAVA--------NRALIARRLLAHIKETGEP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + + Q L HRKG+T P D PV+I G+ G SY
Sbjct: 237 VNHNL--LAPYTLGDTQGWL--HRKGAT----------PADLG----PVVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ T G E S HGAGR R + + L + +L RV +L+
Sbjct: 279 LVQPT--GGSEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK++ V+ G+ K +L+PV +K
Sbjct: 337 EEAPQAYKSIESVMQCLTGAGLVKPLARLKPVLTLK 372
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
++G GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ A
Sbjct: 131 SVGGGNHFAELQQIDSVYDDEAIAALGIRPA-QLLLLAHSGSRGFGQQILRA 181
>gi|160938913|ref|ZP_02086264.1| hypothetical protein CLOBOL_03807 [Clostridium bolteae ATCC
BAA-613]
gi|158437876|gb|EDP15636.1| hypothetical protein CLOBOL_03807 [Clostridium bolteae ATCC
BAA-613]
Length = 513
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 145/348 (41%), Gaps = 68/348 (19%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
++G GNH+ E+Q V EIYD A+ GI G + VMIHSGS GHQ
Sbjct: 211 SIGGGNHFVEMQRVAEIYDGRTANAWGIRK-GSILVMIHSGSLTIGHQSGRINR-----I 264
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK---RDNIETN 201
I E+Y K G H L+ + M+ R+N+ +
Sbjct: 265 ITKELYPK-----------------------GVPHPDNGIYLLPEREKMEINSRENVPVS 301
Query: 202 DR-----QLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
D+ Q C+ + N FA + + + +M ++YD
Sbjct: 302 DKTDSPWQRFCSTTYNAANFGFANRL----------FLGLMLQRAVTDKVRPYEMKLLYD 351
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
HN EE ++G+ +HRKG+ A + + G+PV+I G+MG+ SY
Sbjct: 352 SPHNFIWKEE--MEGRN--YFIHRKGACSA-RGMEGMEGTPFAYYGEPVMIPGSMGSSSY 406
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD--YQEVLNKL-----------ESQGI 363
+L G G ++ S HGAGR LSR ++ D ++E + K + +G
Sbjct: 407 LLRGM--GNPQSLWSASHGAGRRLSRGEAIHGNDREFKEFMKKFHIVTPIDPDRSDLKGR 464
Query: 364 S-IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ I + + EAP +YK++ VV G++ ++ PV +K
Sbjct: 465 NDILKKWEETIRSEAPYAYKDIHQVVKVHEEHGMAGLVARMEPVFTVK 512
>gi|197287315|ref|YP_002153187.1| hypothetical protein PMI3510 [Proteus mirabilis HI4320]
gi|194684802|emb|CAR46875.1| conserved hypothetical protein [Proteus mirabilis HI4320]
Length = 382
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 42/286 (14%)
Query: 129 FGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
F H + + GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G
Sbjct: 129 FAHSLGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLG-------- 179
Query: 187 VQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTP 246
+++ R + E Q A ++ + A L+ H+I +Q +T
Sbjct: 180 ----QSILRAHTEQFGHQGLVANTDAANDYLQAHDHALNYAKLNRHLIGHRMMEQIHTQG 235
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
VI DV+HN+ + E + +Q L HRKG+T P HH + V+
Sbjct: 236 T-----VITDVNHNLVEPCE--LYNQQGWL--HRKGAT---PAHHEI-----------VV 272
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
I G+ G SY++ + + S HGAGR R + + L ++ +L + R
Sbjct: 273 IPGSRGDHSYLVKPIISEL--SLHSLPHGAGRKWMRTECKGRLSHRFTPLQLSRTALGSR 330
Query: 367 V--ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ A+ +L+ EEAP+SYK++ V+++ ++G+ + +L+PV K
Sbjct: 331 IICANKQLIYEEAPQSYKSIETVIESMRSLGLIEVIARLKPVITYK 376
>gi|410638866|ref|ZP_11349419.1| tRNA-splicing ligase RtcB [Glaciecola lipolytica E3]
gi|410141394|dbj|GAC16624.1| tRNA-splicing ligase RtcB [Glaciecola lipolytica E3]
Length = 397
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 171/413 (41%), Gaps = 104/413 (25%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHS----------------VPST-------------- 65
+ Q+ VA+LP I G+PD+H +PS
Sbjct: 27 ALAQMRRVASLPFIFKHVAGMPDIHLGVGATVGSVIATTDAIIPSAVGVDIGCGMNAVRL 86
Query: 66 ----QWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 121
L DN ++ +R+ + LGAG H+ Q+ +A M ++ +
Sbjct: 87 SLKASELPDNLLQIRQDIERT-VPLGAGGHHKYEQL-----QGGSAMAMNLDKILAKHPQ 140
Query: 122 I--HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
I H ++ F +Q+ T +GNH+ EI +DE D W VM+HSGSRG
Sbjct: 141 ISRHGSAKKFANQLGTLGSGNHFIEI-CIDENDDVW--------------VMLHSGSRGI 185
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
G+ + + K M+ I D+ L + + + A+A+ + + M
Sbjct: 186 GNMIGQYFIRLARKEMEIHQINLPDKDLGYLKEGTQYFNDYVEAVAWAQDYALLNREHMM 245
Query: 232 HVIYDAFA---KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP 288
+ + K F T + ++ H HN + E H DG ++ V RKG+ RA
Sbjct: 246 KAVLRSLTFRLKPFTVTKEAINCH------HNFVEKELH--DGH--SVWVTRKGAIRARE 295
Query: 289 PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRN 348
+IP G+MG SY++ G KG E+F S HGAGR +SR K+++
Sbjct: 296 SELGIIP-------------GSMGAKSYIIKG--KGNPESFCSCAHGAGRKMSRTKAKKT 340
Query: 349 LDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV-------TDVVDTCHAV 394
++ L +Q I + V++E P +YK++ +D+V+ H +
Sbjct: 341 F----TVDDLTAQTKGIECRKDEGVIDEIPSAYKSIDKVMEMQSDLVEVVHTL 389
>gi|227356999|ref|ZP_03841371.1| release factor H-coupled RctB family protein [Proteus mirabilis
ATCC 29906]
gi|227162877|gb|EEI47836.1| release factor H-coupled RctB family protein [Proteus mirabilis
ATCC 29906]
Length = 382
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 42/286 (14%)
Query: 129 FGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
F H + + GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G
Sbjct: 129 FAHSLGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLG-------- 179
Query: 187 VQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTP 246
+++ R + E Q A ++ + A L+ H+I +Q +T
Sbjct: 180 ----QSILRAHTEQFGHQGLVANTDAANDYLQAHDHALNYAKLNRHLIGHRMMEQIHTQG 235
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
VI DV+HN+ + E + +Q L HRKG+T P HH + V+
Sbjct: 236 T-----VITDVNHNLVEPCE--LYNQQGWL--HRKGAT---PAHHEI-----------VV 272
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
I G+ G SY++ + + S HGAGR R + + L ++ +L + R
Sbjct: 273 IPGSRGDHSYLVKPIISEL--SLHSLPHGAGRKWMRTECKGRLSHRFTPLQLSRTALGSR 330
Query: 367 V--ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ A+ +L+ EEAP+SYK++ V+++ ++G+ + +L+PV K
Sbjct: 331 IICANKQLIYEEAPQSYKSIETVIESMRSLGLIEVIARLKPVITYK 376
>gi|429082976|ref|ZP_19146029.1| Protein with similarity to RtcB [Cronobacter condimenti 1330]
gi|426548230|emb|CCJ72070.1| Protein with similarity to RtcB [Cronobacter condimenti 1330]
Length = 379
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 158/387 (40%), Gaps = 54/387 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
+Q+ A LPG+ R VG+PD+H P + S N + + + +G G +
Sbjct: 27 TQQLLTTARLPGMT-RIVGMPDLH--PGRGYPVGAAFFSVNRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEI--YDKWAASKMGIEDVGQV-----CVMIHSGSRGFGHQVAT--AGNHYAEIQI 145
+ DK D+ V + H + + + + GNH+AE+Q
Sbjct: 84 TSLSSRKANLDKLEKRLHSYSDIAPVEWLESALPPHLAAHPYAASLGSVGGGNHFAELQH 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQL 205
+D +YD A + + I Q+ ++ HSGSRGFG Q+ L + D +E
Sbjct: 144 IDHVYDDEAVNALNIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHDGLEAG---- 194
Query: 206 ACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 265
S + Q LD + A + + + DV+HN+ E
Sbjct: 195 ------SEAADDYLAQHQQA---LDFAIANRALIARRLLEHIKVTGEPVLDVNHNL--LE 243
Query: 266 EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM 325
+ KQ L HRKG+T P H PV+I G+ G SY++ T G
Sbjct: 244 PYTWGEKQGWL--HRKGAT---PAH-----------CGPVVIPGSRGDYSYLVQPT--GS 285
Query: 326 QETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVMEEAPESYKN 383
E S HGAGR R + + L + +L RV +L+ EEAP++YK+
Sbjct: 286 SEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLIYEEAPQAYKS 345
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ V+ G+ K +L+PV +K
Sbjct: 346 IESVMQCLIGAGLVKPLARLKPVLTLK 372
>gi|266625286|ref|ZP_06118221.1| RtcB protein, partial [Clostridium hathewayi DSM 13479]
gi|288862818|gb|EFC95116.1| RtcB protein [Clostridium hathewayi DSM 13479]
Length = 329
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 136/296 (45%), Gaps = 56/296 (18%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQVATDALV 187
+Q+ T GNH+ E+Q ED G + +MIHSGSR FG ++ D
Sbjct: 75 YQIGTLGGGNHFIELQ----------------EDQDGYLGIMIHSGSRHFGKEIC-DYFH 117
Query: 188 QMEKAMKR--DNIETNDRQLACARINSNKNKAFAKQFNTTPD----------DLDMHVIY 235
+ + + + + LA ++S + + + N + + + ++
Sbjct: 118 KRARELNAAWHSAVPDSYHLAFLPVDSAEGQDYIPWMNLALEYAFENRKRMMEKTLEIVA 177
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ K +TT + H+ + HN A E H K + VHRKG+TRA
Sbjct: 178 EKVEKYLDTTME-FTEHI--NCHHNYASLETHY----GKEVWVHRKGATRAG-------- 222
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
G+ +I G MG+ SYV+ G KG E+F S+ HGAGRA SR + +EV+
Sbjct: 223 -----NGEMAVIPGAMGSYSYVVMG--KGNPESFESSSHGAGRAYSRKAAMEKFSCEEVI 275
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
N L++QG+ + V EE+ +YK++ V+D + + K KL+ V V+KG
Sbjct: 276 NDLKAQGVVLGKMKKSDVAEESRFAYKDIDHVMDQQKDLVVPVK--KLKTVGVVKG 329
>gi|429105784|ref|ZP_19167653.1| Protein with similarity to RtcB [Cronobacter malonaticus 681]
gi|426292507|emb|CCJ93766.1| Protein with similarity to RtcB [Cronobacter malonaticus 681]
Length = 379
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 119/276 (43%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ L + D
Sbjct: 135 GNHFAELQQIDSVYDDDAIAALGIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHD 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+E S + + Q LD V A + + D
Sbjct: 190 GLEAG----------SEEASEYLAQHQQA---LDFAVANRALIARRLLAHIKETGEPVLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + + Q L HRKG+T P D PV+I G+ G SY
Sbjct: 237 VNHNL--LAPYTLGDTQGWL--HRKGAT----------PADLG----PVVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ T G E S HGAGR R + + L + +L RV +L+
Sbjct: 279 LVQPT--GGSEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK++ V+ G+ K +L+PV +K
Sbjct: 337 EEAPQAYKSIESVMQCLTGAGLVKPLARLKPVLTLK 372
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
++G GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ A
Sbjct: 131 SVGGGNHFAELQQIDSVYDDDAIAALGIRPA-QLLLLAHSGSRGFGQQILRA 181
>gi|381160805|ref|ZP_09870037.1| release factor H-coupled RctB family protein [Thiorhodovibrio sp.
970]
gi|380878869|gb|EIC20961.1| release factor H-coupled RctB family protein [Thiorhodovibrio sp.
970]
Length = 395
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 168/400 (42%), Gaps = 72/400 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR---SPLTLGAGNHYA 93
++Q+ AALPG+ +VGLPD+H P + S I+ + + G G
Sbjct: 23 LRQLEQTAALPGMRA-AVGLPDLH--PGKGYPIGAAFLSERIYPALVGNDIGCGMGLWQT 79
Query: 94 EIQIVDEIYDKWAASKMGIE-----DVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIV 146
++ I ++ A G+E D+ V F + T GNH+AE Q +
Sbjct: 80 DLAIRKFKPERAAERLTGLEGPWDGDLAHWRVDHGLTPTAFDQALGTIGGGNHFAEWQTL 139
Query: 147 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL-------VQMEKAMKRDNIE 199
E+ D A +++ + D ++ +++HSGSRG G V + ++ E RD ++
Sbjct: 140 AEVLDPSALAELDL-DPERLLLLVHSGSRGLGESVLRAVIDRHGHLGLEPESTAARDYLK 198
Query: 200 TNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSH 259
+D+ + A N + A++ N + + + DV H
Sbjct: 199 AHDQAIHWAEAN---RRLIARRL-------------------LNALGTEAERRL--DVWH 234
Query: 260 NIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV-- 317
N+ + +D +TL +HRKG+ P D PV+I G+ GT SY+
Sbjct: 235 NLVQP----IDWAGETLWLHRKGAA----------PADRG----PVVIPGSRGTLSYLVK 276
Query: 318 --LTGTEKGMQET---FGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASP 370
+ K ET S HGAGR R ++R L ++ + L+ + V
Sbjct: 277 PLIQPRLKSAPETDASLRSLAHGAGRKWKRGEARGRLSARQRPDDLQKTALGGHVICEDK 336
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK V VV G+ + LRPV K
Sbjct: 337 ELLYDEAPEAYKAVDRVVADLVDAGLCRVIATLRPVLTYK 376
>gi|425073954|ref|ZP_18477059.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW4]
gi|404594607|gb|EKA95176.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW4]
Length = 378
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 42/286 (14%)
Query: 129 FGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
F H + + GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G
Sbjct: 125 FAHSLGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLG-------- 175
Query: 187 VQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTP 246
+++ R + E Q A ++ + A L+ H+I +Q +T
Sbjct: 176 ----QSILRAHTEQFGHQGLVANTDAANDYLQAHDHALNYAKLNRHLIGHRMMEQIHTQG 231
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
VI DV+HN+ + E + +Q L HRKG+T P HH + V+
Sbjct: 232 T-----VITDVNHNLVEPCE--LYNQQGWL--HRKGAT---PAHHDI-----------VV 268
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
I G+ G SY++ + + S HGAGR R + + L ++ +L + R
Sbjct: 269 IPGSRGDNSYLVKPIISEL--SLHSLPHGAGRKWMRTECKGRLSHRFTPLQLSRTALGSR 326
Query: 367 V--ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ A+ +L+ EEAP+SYK++ V+++ ++G+ + +L+PV K
Sbjct: 327 IICANKQLIYEEAPQSYKSIETVIESMRSLGLIEVIARLKPVITYK 372
>gi|429109050|ref|ZP_19170820.1| Protein with similarity to RtcB [Cronobacter malonaticus 507]
gi|426310207|emb|CCJ96933.1| Protein with similarity to RtcB [Cronobacter malonaticus 507]
Length = 379
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 120/276 (43%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ L + D
Sbjct: 135 GNHFAELQQIDSVYDDDAIAALGIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHD 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+E ++ + FA + +I T + + D
Sbjct: 190 GLEAGSKEAGEYLAQHQQALDFAVA--------NRALIARRLLAHIKETGEP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + + Q L HRKG+T P D PV+I G+ G SY
Sbjct: 237 VNHNL--LAPYTLGDTQGWL--HRKGAT----------PADLG----PVVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ T G E S HGAGR R + + L + +L RV +L+
Sbjct: 279 LVQPT--GGSEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK++ V+ G+ K +L+PV +K
Sbjct: 337 EEAPQAYKSIESVMQCLTGAGLVKPLARLKPVLTLK 372
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
++G GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ A
Sbjct: 131 SVGGGNHFAELQQIDSVYDDDAIAALGIRPA-QLLLLAHSGSRGFGQQILRA 181
>gi|422593608|ref|ZP_16667900.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330983917|gb|EGH82020.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 407
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 56/273 (20%)
Query: 130 GHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV 187
G Q+ T +GNH+ E+ +DE D W +M+HSGSRG G+ + + +
Sbjct: 159 GTQLGTLGSGNHFIEL-CIDENQDVW--------------IMLHSGSRGIGNMIGSHFIK 203
Query: 188 QMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFA-- 239
+ +K M R I+ DR LA + + + ++A+++ +L M + A
Sbjct: 204 EAQKLMDRWYIDLPDRNLAYLPEGAQEFEDYVEALSWAQEYAFKNRELMMEKVILALRRT 263
Query: 240 --KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
K+F T + ++ H HN A E H + L V RKG+ RA +IP
Sbjct: 264 IDKEFTITQEAINCH------HNYATRENHF----GENLWVTRKGAIRAQRGDLGIIP-- 311
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
G+MG SY++ G KG E++ S HGAGR +SR+++R+ +
Sbjct: 312 -----------GSMGQRSYIVRG--KGNAESYCSCSHGAGRKMSRSQARKEF----TVAD 354
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
L++Q + + V++E P +YK++ V+D
Sbjct: 355 LKAQTEGVECLKTEAVLDEIPGAYKDIDVVMDN 387
>gi|389842111|ref|YP_006344195.1| release factor H-coupled RctB family protein [Cronobacter sakazakii
ES15]
gi|387852587|gb|AFK00685.1| putative release factor H-coupled RctB family protein [Cronobacter
sakazakii ES15]
Length = 379
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 122/277 (44%), Gaps = 42/277 (15%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ L + D
Sbjct: 135 GNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHD 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAF-AKQFNTTPDDLDMHVIY 255
+E S + + Q LD V A A++ + V+
Sbjct: 190 GLEAG----------SEEASEYLAQHQQA---LDFAVANRALIARRLLAHIKETGERVL- 235
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
DV+HN+ + + Q L HRKG+T P D PV+I G+ G S
Sbjct: 236 DVNHNL--LAPYTLGDTQGWL--HRKGAT----------PADLG----PVVIPGSRGDYS 277
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLV 373
Y++ T G E S HGAGR R + + L + +L RV +L+
Sbjct: 278 YLVQPT--GGSEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLI 335
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK++ V+ G+ K +L+PV +K
Sbjct: 336 YEEAPQAYKSIESVMQCLTGAGLVKPLARLKPVLTLK 372
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
++G GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ A
Sbjct: 131 SVGGGNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQILRA 181
>gi|152986556|ref|YP_001351579.1| hypothetical protein PSPA7_6268 [Pseudomonas aeruginosa PA7]
gi|150961714|gb|ABR83739.1| hypothetical protein PSPA7_6268 [Pseudomonas aeruginosa PA7]
Length = 379
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 170/387 (43%), Gaps = 54/387 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ AAL G+ R VGLPD+H P + S+ + + + +G G E
Sbjct: 27 IQQLQTTAALDGMQ-RVVGLPDLH--PGRGYPVGAAFFSAGRFYPALVGNDIGCGMALWE 83
Query: 95 IQIV------DEIYDKWAASKMGIEDVGQVCV-MIHSGSRGFGHQVAT--AGNHYAEIQI 145
+V D++ + + ++D C+ + +R + T GNH+AE+Q
Sbjct: 84 TGLVPGKLSADKLEKRLGNLDLPLDDSWHDCIEALELPAREHWRALGTIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQL 205
V+ ++D+ A +G+ D G++ +++HSGSRG G A++Q E R + D L
Sbjct: 144 VETVFDRAALHALGL-DAGRLQLLVHSGSRGLGQ-----AILQ-EHVSLRGHAGLPDGSL 196
Query: 206 ACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 265
A + +A +F L I + D L++ DV+HN+
Sbjct: 197 EAAAYLARHAEAL--RFAEGNRQLIARRILE------RLRCDGLEL---LDVNHNLVAAA 245
Query: 266 EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM 325
+ VDG L RKG+T P D V+I G+ G SY++ +
Sbjct: 246 Q--VDGVHGWL--QRKGAT----------PADQG----AVVIPGSRGDYSYLVEPLPSAL 287
Query: 326 QETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEEAPESYKN 383
+ S HGAGR R + R L + +++L + RV +L+ EEAPE+YK
Sbjct: 288 --SLFSLAHGAGRKWQRGECRERLSARFSVDQLGRTRLGSRVICGDRQLIYEEAPEAYKG 345
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ VV G+ + +L+PV K
Sbjct: 346 IDSVVGALLEAGLLRLVARLKPVLTYK 372
>gi|154417349|ref|XP_001581695.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915924|gb|EAY20709.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 87
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
M+ FGSTCHGAGR +SR+K+ + + ++V N L S G+ ++ A + + +E+P++YK++
Sbjct: 1 MKCAFGSTCHGAGRLMSRSKALKTIPLEKVQNDLASHGVFLKAADKQTIQDESPDAYKDI 60
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+D C VGIS K +L P+ VIKG
Sbjct: 61 EQVIDACETVGISHKVARLVPMGVIKG 87
>gi|302808941|ref|XP_002986164.1| hypothetical protein SELMODRAFT_2870 [Selaginella moellendorffii]
gi|300146023|gb|EFJ12695.1| hypothetical protein SELMODRAFT_2870 [Selaginella moellendorffii]
Length = 360
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 168/396 (42%), Gaps = 62/396 (15%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYA 93
+ Q+ VA LPG+V ++VG+PD+H PS + + S + +G G
Sbjct: 6 AIDQLEQVARLPGVV-KAVGMPDLH--PSDHYPIGAAIESEECIYPVLIGGDVGCGMALF 62
Query: 94 EIQIVDEIYDKWAASKM-GIEDV---GQVCVMIH------SGSRGFGHQVAT--AGNHYA 141
+ + K K+ GIE G + + S S F + T GNH+A
Sbjct: 63 QTTLSSSTRPKRICDKLQGIEGRWKDGSLSEWLAKNGISASSSTPFDESLGTIGGGNHFA 122
Query: 142 EIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETN 201
EIQ V+ + D + S +G+ + ++ +++HSGSRG G +A VQ+ + +
Sbjct: 123 EIQQVERVEDPVSFSALGLHE-DKLVLLVHSGSRGLGKHIAHSQPVQLRENTPEFDAYMQ 181
Query: 202 DRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNI 261
AC +N+ DL H I ++ D + D+ HN
Sbjct: 182 QHNYACNWARTNR-------------DLIAHRIMTCL-----SSDPDASASKVLDIWHNN 223
Query: 262 AKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGT 321
+E +D +++ +HRKG+ P D V+I G+ G+ SY++
Sbjct: 224 VTNKE--ID--SRSVWLHRKGAA----------PSDQG----AVVIPGSRGSFSYLVMPV 265
Query: 322 EKGMQETFGSTCHGAGRALSRAKS-RRNLDYQEVLNK----LESQGISIRVASP--KLVM 374
+ +F S HGAGR+L+R + R + +N L+ + RV L+
Sbjct: 266 GDQRENSF-SLAHGAGRSLTRGVALTRMKNKASTVNAAAAALQETRLGGRVICEDVNLLF 324
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK+V VV GI K RPV K
Sbjct: 325 EEAPEAYKDVDAVVGELVGCGIIKVVAVYRPVVTYK 360
>gi|123392134|ref|XP_001300197.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881196|gb|EAX87267.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 87
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
M+ FGSTCHGAGR +SR+K+ + + + V N L S G+ ++ A + + +E+P++YK++
Sbjct: 1 MKCAFGSTCHGAGRLMSRSKALKTIPLENVQNDLASHGVFLKAADKQTIQDESPDAYKDI 60
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+D C VGIS K +L P+ VIKG
Sbjct: 61 EQVIDACETVGISHKVARLVPMGVIKG 87
>gi|317056822|ref|YP_004105289.1| hypothetical protein Rumal_2169 [Ruminococcus albus 7]
gi|315449091|gb|ADU22655.1| protein of unknown function UPF0027 [Ruminococcus albus 7]
Length = 411
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 132/327 (40%), Gaps = 76/327 (23%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ EIQ DE G +M+HSGSR FG+ V N +
Sbjct: 161 TLGGGNHFIEIQQDDE---------------GMCGIMLHSGSRHFGNIVGQYFN-----K 200
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I E+ D+W + ++ + G R L M+ M + +R
Sbjct: 201 IAHELNDRWFSCVPSEWNLPFLPADTDEGKR---------YLAWMQLCM---DFAYENRA 248
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+ ++ K K TP D+++ H HN A
Sbjct: 249 IMLGKVKEIFTKHIEKHTGITP-----------------IFSDEINCH------HNYAAL 285
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H K + VHRKG+ RA +IP G MG+ SY++ G KG
Sbjct: 286 ESHF----GKNVWVHRKGAIRAREGEMGIIP-------------GAMGSYSYIVRG--KG 326
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
+E+F S+ HGAGRA SR + + V+ L+ Q + + V EE+ +YK++
Sbjct: 327 CEESFMSSSHGAGRAYSRTAAMEKFSVESVMVDLKKQNVVLAKNKKSDVPEESRFAYKDI 386
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
DV+ +++ +L V VIKG
Sbjct: 387 DDVMTNQQE--LTEPVKRLFTVGVIKG 411
>gi|357018552|ref|ZP_09080822.1| hypothetical protein KEK_01100 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356481706|gb|EHI14804.1| hypothetical protein KEK_01100 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 347
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 168/380 (44%), Gaps = 59/380 (15%)
Query: 44 AALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR----SPLTLGAGNHYAEIQIVD 99
A +P VG +G + + T++ +D+ W R S + L GN+ ++
Sbjct: 14 AVIPAAVGVDIGCGMIAA--RTRFTADDIADKDPAWLRKSLESSIPLSPGNYNRSLRR-- 69
Query: 100 EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASK 157
+D A +E + + S S + Q+ + GNH+ E
Sbjct: 70 --FDFTQARLDRLERLATESGVDLSHSPKWREQLGSLGGGNHFIE--------------- 112
Query: 158 MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKA 217
+ I+D V + +HSGSRG GH++A + ++ ++ I+ + LA + +
Sbjct: 113 LCIDDDEVVWLFLHSGSRGVGHKIARRHIAAAKRQCEQHGIDLPNPDLAYLTEGTPEFDR 172
Query: 218 F------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+ A+QF + M +FA+ PDD+++ I + HN E+H G
Sbjct: 173 YITELNWAQQFALANREEMMDRFRQSFARWMRVDPDDVEVQRI-NTHHNYTVQEQHA--G 229
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
KQ + V RKG+ A P +IP G+MGT SY++ G KG ++ S
Sbjct: 230 KQ--VWVTRKGAINAHPGVMGIIP-------------GSMGTRSYIVRG--KGNPDSLCS 272
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
HGAGR SR ++RR ++ ++ +GI R + + +E P++YK++ V+
Sbjct: 273 APHGAGRRFSRTEARRRFSADDLAKRM--KGIEYRHGAAWV--DEIPDAYKSIDQVM--A 326
Query: 392 HAVGISKKTFKLRPVAVIKG 411
+V + + LR V +KG
Sbjct: 327 DSVDLVEVVTSLRQVVNVKG 346
>gi|239617433|ref|YP_002940755.1| hypothetical protein Kole_1045 [Kosmotoga olearia TBF 19.5.1]
gi|239506264|gb|ACR79751.1| protein of unknown function UPF0027 [Kosmotoga olearia TBF 19.5.1]
Length = 383
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 146/356 (41%), Gaps = 107/356 (30%)
Query: 75 SSNIWKRSPL----------------TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQV 118
+S+ WKR P TLG GNH+ EIQ +++G +
Sbjct: 116 ASDFWKREPAGPITERERKNAEKQLGTLGGGNHFIEIQK---------------DELGNI 160
Query: 119 CVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWA---ASKMGIEDVGQVCVMIHSGSR 175
+ +HSGSR G QVA+ YDK A K GI+ + + +
Sbjct: 161 YLTVHSGSRNLGKQVAS-------------YYDKIAREYCKKRGIKPPPGLAWLPRNSKS 207
Query: 176 GFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIY 235
G + L +ME M + +R+L A + V+
Sbjct: 208 GRQY------LAEMEFCMA---FASENRRLLVAS--------------------ALEVMR 238
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
F P+ ++ I V HN A E H + +LVHRKG+
Sbjct: 239 YFF-------PEMKELERIETV-HNYASLERHYGE----KVLVHRKGAV----------- 275
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
L V+I G+MG+ +Y+ G E+F S HGAGR L R +++R L++ EV
Sbjct: 276 ----LAKGKVIIPGSMGSPTYIAKGLCN--PESFCSCSHGAGRVLGRHEAKRKLNFAEVK 329
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ + + + V+EEA +YK++ V+D + + ++ KL P+AVIKG
Sbjct: 330 KDLDERNVVLMTPDKGAVIEEARVAYKDIDKVMD--YQKDLVERLVKLTPLAVIKG 383
>gi|196231795|ref|ZP_03130652.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
gi|196224267|gb|EDY18780.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
Length = 467
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 36/258 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E D A GIE V ++ HSGSRG G QV V ++AM R
Sbjct: 212 SGNHFVEFGAF--TADAAQAEAFGIEPGEHVALLSHSGSRGTGAQVCD---VYSKRAMAR 266
Query: 196 -DNIETNDRQLACARINSNKNKAFAKQFNTTP--DDLDMHVIYDAFAKQFNTTPDDLDMH 252
+++ + LA ++ + + N + +I+ AK+ L
Sbjct: 267 HEHLPKELKHLAWLSLDDADGQEYWAAMNLMGRYAAANHALIHKHIAKK-------LGAD 319
Query: 253 VIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
I D+ HN A E H+V+G+++ ++VHRKG+T P + G +I G+
Sbjct: 320 AILDIENHHNFAWKERHVVNGEEREVIVHRKGAT----------PAGAGVLG---IIPGS 366
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
M + YV+ G KG E+ S HGAGR +SR K+ ++ + V +L + G+ + A
Sbjct: 367 MASPGYVVRG--KGSPESLLSASHGAGRVMSRTKALQSFTWSAVKKQLAAAGVELLSAG- 423
Query: 371 KLVMEEAPESYKNVTDVV 388
++E P YK++ V+
Sbjct: 424 ---LDEVPGVYKDIAQVM 438
>gi|320354586|ref|YP_004195925.1| hypothetical protein Despr_2496 [Desulfobulbus propionicus DSM
2032]
gi|320123088|gb|ADW18634.1| protein of unknown function UPF0027 [Desulfobulbus propionicus DSM
2032]
Length = 390
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 47/282 (16%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA---TDALVQMEKAM 193
GNH+ EIQ + ++ +M+HSGSR G++VA +++ K
Sbjct: 149 GNHFIEIQRGRD---------------QRIWLMVHSGSRNIGYKVAGQYNTLAIRLAKTK 193
Query: 194 KRDNIETNDRQLACARINSNKNKAFAKQ--FNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
++ I + QLA + S + + + ++ + + + +AF +
Sbjct: 194 GQEAIPSQ-WQLAALPLASAEGQRYLREMEYCVAFARANRREMMNAFQEIVAEITGCDQF 252
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTM 311
DV+HN A E H + + VHRKG+TRAF + +IP G+
Sbjct: 253 EPPVDVAHNYAARETHF----GREVWVHRKGATRAFAGEYGIIP-------------GSQ 295
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI--SIRVAS 369
G+ SY++ G G ++F S HGAGR L R +++R L+ +E ++KL ++ I S+R S
Sbjct: 296 GSRSYIVRGL--GNPQSFMSCSHGAGRVLGRKEAQRVLNLREEIDKLNARHILHSLRHRS 353
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EEAP +YK++ V+ + + + +L P+AV+KG
Sbjct: 354 D---LEEAPGAYKDINVVIAS--QADLIEVVTELEPLAVLKG 390
>gi|395003952|ref|ZP_10388044.1| hypothetical protein PMI14_00499 [Acidovorax sp. CF316]
gi|394318129|gb|EJE54596.1| hypothetical protein PMI14_00499 [Acidovorax sp. CF316]
Length = 467
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 120/281 (42%), Gaps = 40/281 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+V++I D+ AA G+ G V VMIHSGSR G V + M R
Sbjct: 220 SGNHFVELQVVEKILDRHAAYHAGLR-AGDVVVMIHSGSRDIGFYVG-------QAWMDR 271
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDL 249
E Q A + A+++ + V+ + K
Sbjct: 272 AKAEWPHGQRHPASGLYGLSGPLAEEYLQAMGVAARYAWANRVVLAELVRKDLEQLIGAS 331
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D ++ DV HN+ E K + +HRKG+T A LIP G
Sbjct: 332 DSRLVVDVPHNVVLQE--------KGMNIHRKGATPANEGDFALIP-------------G 370
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SY++TG G E S HGAGR++ R R + Q +++R
Sbjct: 371 SMGDASYLVTGL--GSAEWLWSCSHGAGRSMRRQAMRAMRPNPANAGEQGWQCVTLR--- 425
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +EEAP++YK + V+D + G+ + +LRP K
Sbjct: 426 EERRIEEAPQAYKPIGPVIDAQDSAGLVRPAVRLRPWVTFK 466
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 64 STQWLSDNTMRSSNIWKRSPL--TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 121
S ++ D ++ + R P T+G+GNH+ E+Q+V++I D+ AA G+ G V VM
Sbjct: 194 SARYAPDAYLQERHAVFRDPCLGTVGSGNHFVELQVVEKILDRHAAYHAGLR-AGDVVVM 252
Query: 122 IHSGSRGFGHQVATA 136
IHSGSR G V A
Sbjct: 253 IHSGSRDIGFYVGQA 267
>gi|424798130|ref|ZP_18223672.1| Protein with similarity to RtcB [Cronobacter sakazakii 696]
gi|423233851|emb|CCK05542.1| Protein with similarity to RtcB [Cronobacter sakazakii 696]
Length = 379
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 159/395 (40%), Gaps = 70/395 (17%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSN----------------IWK 80
+Q+ A L GI R VG+PD+H P + S N +W+
Sbjct: 27 TQQLLTTARLAGIT-RVVGMPDLH--PGRGYPIGAAFFSVNRFYPALVGNDIGCGMALWQ 83
Query: 81 RSPLT--LGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGN 138
S LT L +Q +I A +E + H + G GN
Sbjct: 84 TSLLTRKLNLDKLEKRLQTYSDI-----APADWLEAALPPSLAAHPYAASLGS--VGGGN 136
Query: 139 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNI 198
H+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ L + D +
Sbjct: 137 HFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHDGL 191
Query: 199 ETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAF-AKQFNTTPDDLDMHVIYDV 257
+ S + + Q LD V A A++ + V+ DV
Sbjct: 192 DAG----------SEEASEYLAQHQQA---LDFAVANRALIARRLLAHIKETGERVL-DV 237
Query: 258 SHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV 317
+HN+ + + Q L HRKG+T P D PV+I G+ G SY+
Sbjct: 238 NHNL--LAPYTLGDTQGWL--HRKGAT----------PADLG----PVVIPGSRGDYSYL 279
Query: 318 LTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVME 375
+ T G E S HGAGR R + + L + +L RV +L+ E
Sbjct: 280 VQPT--GGSEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLIYE 337
Query: 376 EAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EAP++YK++ V+ G+ K +L+PV +K
Sbjct: 338 EAPQAYKSIESVMQCLTGAGLVKPLARLKPVLTLK 372
>gi|427739306|ref|YP_007058850.1| hypothetical protein Riv7116_5942 [Rivularia sp. PCC 7116]
gi|427374347|gb|AFY58303.1| hypothetical protein Riv7116_5942 [Rivularia sp. PCC 7116]
Length = 482
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 51/290 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q VD++ + A GI++ GQ+ MIHSGSR G + M RD
Sbjct: 227 GNHFVEVQRVDKVINSALAYAWGIKE-GQIAFMIHSGSRHVGKYIG---------GMWRD 276
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFN------------- 243
+ A + +K F N+ P+ + ++ +A A +
Sbjct: 277 KAVSAWE----AGVKYPDSKIFPLSLNSHPELVAGYLQAEATAANYGFMNRLLLAELLRL 332
Query: 244 ---TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
D++ ++YD+ HNI E + + + RKG+ A
Sbjct: 333 RLREVYGDVEAPLVYDLPHNITLPVESKI-----SRWITRKGACPAN------------- 374
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPV+I G+MG SY+ G KG + S HGAGR SR + R +E +L
Sbjct: 375 LGQPVIIPGSMGAYSYLCVG--KGNHKFANSASHGAGRLRSRFELSRG-GARETEEELGL 431
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
G+ + +EEAP +YK + V+D GI +L P+ K
Sbjct: 432 TGVDCITLREERRIEEAPAAYKPIDSVIDVQLKAGIVDVVARLSPILTFK 481
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T+G GNH+ E+Q VD++ + A GI++ GQ+ MIHSGSR G +
Sbjct: 223 TIGGGNHFVEVQRVDKVINSALAYAWGIKE-GQIAFMIHSGSRHVGKYI 270
>gi|89093038|ref|ZP_01165989.1| hypothetical protein MED92_03138 [Neptuniibacter caesariensis]
gi|89082688|gb|EAR61909.1| hypothetical protein MED92_03138 [Oceanospirillum sp. MED92]
Length = 390
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 46/283 (16%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE Q++D++ D + +GI D +V +++HSGSRG G ++ T+
Sbjct: 139 GNHFAEFQVIDQVEDSAKLAALGI-DAKKVLLLVHSGSRGLGQKILTE------------ 185
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+I + Q A + + A +L+ I F K + + +I D
Sbjct: 186 HISFFNHQGLLAETQAFHDYLTAHNEALRWAELNREFIAKRFLKAIRESGE-----LILD 240
Query: 257 VSHN-IAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
++HN ++KTE G+ L HRKGST P D V+I G+ G S
Sbjct: 241 INHNLVSKTE---CGGEPAWL--HRKGST----------PADQG----AVIIPGSRGDYS 281
Query: 316 YVLTGT------EKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA- 368
Y++ T G+ E+ S HGAGR R ++ L + L + RV
Sbjct: 282 YLVQPTASTDEVSSGLDESLHSLAHGAGRKWKRGDCQQRLSSKYKKQDLLKTELGSRVIC 341
Query: 369 -SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +L+ +EAP++YK+ ++D G+ + +LRP K
Sbjct: 342 NNKELLYDEAPQAYKDCETIIDDLCDAGLVRVIARLRPALTFK 384
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 56 LPDVHSVPSTQWLSDNTMR------SSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASK 109
L DV S + W + T R ++ + ++ T+G GNH+AE Q++D++ D +
Sbjct: 100 LNDVESPLGSAWQDEITERKQQKQVTNAAFDQAFGTIGGGNHFAEFQVIDQVEDSAKLAA 159
Query: 110 MGIEDVGQVCVMIHSGSRGFGHQVAT 135
+GI D +V +++HSGSRG G ++ T
Sbjct: 160 LGI-DAKKVLLLVHSGSRGLGQKILT 184
>gi|406896722|gb|EKD40901.1| hypothetical protein ACD_74C00133G0003 [uncultured bacterium]
Length = 397
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 58/293 (19%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T GNH+ EIQ + G V +MIHSGSR G +VA
Sbjct: 150 QIGTLGGGNHFIEIQQGSD---------------GFVWLMIHSGSRNIGFKVA------- 187
Query: 190 EKAMKRDNIETNDR---------QLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFA 239
+ I N+R +LA + + + +A+ ++ D L + A
Sbjct: 188 -RYYNELAITLNERWQVSVPKNWELAFLPLETEEGQAYLEEMQYCVDFALASRRLMMKRA 246
Query: 240 KQ-FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
K D++ + +++HN A E H + +++HRKG+T+A+
Sbjct: 247 KACLADVVGDVEFGGLINIAHNYAALEHHF----KTNVMIHRKGATKAY----------- 291
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL 358
GQ +I G+ GT SY++ G KG E+F S HGAGR + R +++R L + +L
Sbjct: 292 --NGQLGIIPGSQGTASYIVRG--KGEPESFMSCSHGAGRKMGRKQAQRELCLEAEKERL 347
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ G+ + + K +EEA +YK+++ V+ + + +LRP+AVIKG
Sbjct: 348 DALGVIHAIRTEK-DLEEAAGAYKDISTVMS--NQADLVDVEVELRPLAVIKG 397
>gi|225390313|ref|ZP_03760037.1| hypothetical protein CLOSTASPAR_04066 [Clostridium asparagiforme
DSM 15981]
gi|225043637|gb|EEG53883.1| hypothetical protein CLOSTASPAR_04066 [Clostridium asparagiforme
DSM 15981]
Length = 379
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 168/395 (42%), Gaps = 82/395 (20%)
Query: 39 QIANVAALPGIVGRSVGLPDVHSVPS-------TQWLSDNTMRSSNIWKRSPLTLGAGNH 91
Q+A V+ LPG+V ++VGLPD+H + +Q L + ++I L G
Sbjct: 45 QLAGVSRLPGVV-KTVGLPDLHPGKTPVGMAVLSQGLFYPHLIGNDIGCGMSL-FSTGVR 102
Query: 92 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS--------RGFGHQVATAGNHYAEI 143
A ++ ++ I ++ V SG+ R FG +GNH+AE
Sbjct: 103 RARFKV-----ERCVTRLNSIRELSDV----PSGNPYEEDCPIRDFG--TIGSGNHFAEF 151
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL----VQMEKAMKRDNIE 199
Q ++ D A +G+ D GQV +++HSGSRG+G + + ++ + RD +
Sbjct: 152 QCLENAPDPEMAQALGLMD-GQVFLLVHSGSRGYGQDILSRFYNPGGIREDSEQARDYLL 210
Query: 200 TNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSH 259
+DR L A ++N+ A A++ LD + D
Sbjct: 211 EHDRALLWA----DRNRL-------------------AVAEKL------LDYLGVDDTVE 241
Query: 260 NIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ-PVLIGGTMGTCSYVL 318
+ ++ + V+ + + L HRKGS T Q PV+I G+ G+ +YV
Sbjct: 242 PVVQSCHNYVERRPEGWL-HRKGSVS---------------TKQGPVVIPGSRGSLTYVC 285
Query: 319 TGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEE 376
E + S HGAGR +R+ + +D + N + S V L+ E
Sbjct: 286 MPGED-TAFSLDSVSHGAGRKWARSICKSRIDQKYDRNSIRSTKYKSHVVCHDTNLLFAE 344
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
APE+YKNV V+D+ G+ LRP+ KG
Sbjct: 345 APEAYKNVEQVIDSLLEYGLIHVVATLRPLITFKG 379
>gi|336428344|ref|ZP_08608325.1| hypothetical protein HMPREF0994_04331 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336005597|gb|EGN35641.1| hypothetical protein HMPREF0994_04331 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 411
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 130/290 (44%), Gaps = 46/290 (15%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T GNH+ E+Q +D G + VM+HSGSR FG V +
Sbjct: 158 QIGTLGGGNHFIELQE---------------DDNGYLAVMLHSGSRHFGKSVCDYFHAKA 202
Query: 190 EKAMKRDNIETNDR-QLACARINSNKNKAFAKQFNTTPDDLD-----MHVIYDAFAKQFN 243
+ ++ + D +LA +++ + + + D M + A +++
Sbjct: 203 RELNQKWYSQVPDEYRLAFLPVDTKEGAHYLNWMQLSMDFAKENREKMMLAVKAILEKWI 262
Query: 244 TTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
DL + D++ HN A E H + + VHRKG+ RA
Sbjct: 263 GKYTDLTLEFSGDINCHHNYAALENHY----GENVWVHRKGAVRA-------------RN 305
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
G+ +I G MG+ SYV+ G KG E+F S+ HGAGR SR + +EV+ L+ Q
Sbjct: 306 GELAVIPGAMGSYSYVVMG--KGNPESFCSSSHGAGRQYSRKGAMAAFTCEEVMLDLQKQ 363
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
G+ + V EE+ +YKN+ DV+D + + K +L+ + VIKG
Sbjct: 364 GVILGKKGKADVAEESRFAYKNIEDVMDNQTDLVVPVK--RLKTIGVIKG 411
>gi|423112671|ref|ZP_17100362.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5245]
gi|376390165|gb|EHT02851.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5245]
Length = 379
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 166/399 (41%), Gaps = 78/399 (19%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH---SVP-STQWLSDNTMRSSNIWKRSPLTLGAGNHY 92
++Q+ A LP + R VG+PD+H P + S + + + +G G
Sbjct: 27 IQQLHTTANLPHMQ-RVVGMPDLHPGRGYPIGAAFFSLGHLYPALVGN----DIGCGMAL 81
Query: 93 AEIQIVDEIY--DKWAASKMGIEDVGQVC---------VMIHSGSRGFGHQVATAGNHYA 141
+ I+ Y DK+ + DV Q ++ H G GNH+A
Sbjct: 82 WQTDILARKYNADKFEKKLSAMGDVAQASWLDEHLPENLLTHPWRSALG--SIGGGNHFA 139
Query: 142 EIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV--------ATDALVQMEKAM 193
E+Q V+++ D + G+ D + ++ HSGSRG G + + D L + A
Sbjct: 140 ELQQVEQVVDNDRFQQAGL-DAQHLLLLAHSGSRGLGQSILQRHIAAFSHDGLAE-GSAA 197
Query: 194 KRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHV 253
RD + +D LA AR+N H+I +Q D
Sbjct: 198 ARDYLAEHDDALAFARVNR-------------------HLIATRILQQIRA-----DGRS 233
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+ D++HN E V G Q L HRKG+T P D L V+I G+ G
Sbjct: 234 VLDIAHNF--VESCSVAGLQGWL--HRKGAT----------PDDRGL----VIIPGSRGD 275
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPK 371
S+++ + +ET S HGAGR R + + L + +L + RV +
Sbjct: 276 HSWLVQPVTR--EETLHSLAHGAGRKWMRTECKGRLSGKYTPAQLARTELGSRVICRDRQ 333
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
L+ EEAP++YK+V V++ G+ + +LRP+ +K
Sbjct: 334 LIYEEAPQAYKSVESVLNCLVQAGLVEPIARLRPLLTLK 372
>gi|288871478|ref|ZP_06410190.1| putative RtcB protein, partial [Clostridium hathewayi DSM 13479]
gi|288863323|gb|EFC95621.1| putative RtcB protein [Clostridium hathewayi DSM 13479]
Length = 571
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 146/329 (44%), Gaps = 39/329 (11%)
Query: 105 WAASKMGIED-VGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDV 163
WA G+ED +G + + G GNH+ E+Q V EIYD A+ GI+
Sbjct: 258 WAEETEGLEDFIGDAHTLTYDDQIG----SIGGGNHFVEMQRVAEIYDGQTANAWGIKR- 312
Query: 164 GQVCVMIHSGSRGFGHQVATDALVQM-EKAMKRDNIETNDRQLACARINSNKNKAFAKQF 222
G + +MIH+GS GHQ + + QM + + I D + + + + +
Sbjct: 313 GAILLMIHTGSLMIGHQ--SGRISQMITRGLYPKLIPHPDNGIYLLPEGEGEGREWRRFR 370
Query: 223 NTTPDDLDMHVIYDAF-------AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 275
+TT + + F A + P +M ++YD HN +E +G++
Sbjct: 371 STTGNAANFGFANRMFLGLMLQNAVENRVHP--FEMKLLYDSPHNFIWEKES--EGRKS- 425
Query: 276 LLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHG 335
+HRKG+ A + + G+PV+I G+MG+ SY+L G G + S HG
Sbjct: 426 -YIHRKGACSA-RGMAEMEGTPFAYYGEPVMIPGSMGSSSYLLRGM--GNPDALWSASHG 481
Query: 336 AGRALSRAKSRRNLD--YQEVLNKL-----------ESQGIS-IRVASPKLVMEEAPESY 381
AGR LSR ++ D +QE + K + +G + I + + EAP +Y
Sbjct: 482 AGRRLSRGEAIHGSDREFQEFMKKFHIVTPIDPNRSDLKGRNDILKKWEESLRSEAPYAY 541
Query: 382 KNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
K++ VV G++ ++ PV IK
Sbjct: 542 KDIDKVVKVHADHGMAGLVARMEPVFTIK 570
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 132
++G GNH+ E+Q V EIYD A+ GI+ G + +MIH+GS GHQ
Sbjct: 283 SIGGGNHFVEMQRVAEIYDGQTANAWGIKR-GAILLMIHTGSLMIGHQ 329
>gi|432945872|ref|ZP_20141654.1| hypothetical protein A153_01398 [Escherichia coli KTE196]
gi|433042226|ref|ZP_20229751.1| hypothetical protein WIG_00764 [Escherichia coli KTE117]
gi|431462559|gb|ELH42770.1| hypothetical protein A153_01398 [Escherichia coli KTE196]
gi|431559575|gb|ELI33123.1| hypothetical protein WIG_00764 [Escherichia coli KTE117]
Length = 398
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 126/279 (45%), Gaps = 37/279 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL--VQMEKAM 193
+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V + + E
Sbjct: 154 SGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRRWMDRARAEWPA 212
Query: 194 KRDNIETNDRQLACARINSN-KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ LA + A ++ ++ FA F+ D H
Sbjct: 213 GHKHPQSGLYGLAGGLAEEYLQAMGMAARYAWLNRVTIAEMVRVCFADLFHQD----DSH 268
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++ DV HNI E M +HRKG+T P H G LI G+MG
Sbjct: 269 LVVDVPHNIILREHEMN--------IHRKGAT---PAH----------AGALALIPGSMG 307
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
+++ G G E S HGAGR+ R ++ R+ +E + L Q +++R +
Sbjct: 308 DYTWLAVGC--GNSEWLWSCSHGAGRS-QRRQAMRSRATEE--STLPWQCVTLR---EER 359
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EEAP +YK++ V++ G+ + +LRP KG
Sbjct: 360 RLEEAPAAYKDIAPVIEAQQEAGLIQPAVRLRPWLTFKG 398
>gi|425070109|ref|ZP_18473223.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW6]
gi|404595902|gb|EKA96435.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW6]
Length = 378
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 42/286 (14%)
Query: 129 FGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
F H + + GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G
Sbjct: 125 FAHSLGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLG-------- 175
Query: 187 VQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTP 246
+++ R + E Q A ++ + A L+ H+I +Q +T
Sbjct: 176 ----QSILRAHTEQFGHQGLVANTDAANDYLQAHDHALNYAKLNRHLIGHRMMEQIHTQG 231
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
VI DV+HN+ + E + +Q L HRKG+T P HH + V+
Sbjct: 232 T-----VITDVNHNLVEPCE--LYNQQGWL--HRKGAT---PAHHDI-----------VV 268
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
I G+ SY++ + + S HGAGR R + + L ++ +L + R
Sbjct: 269 IPGSRSDHSYLVKPIISEL--SLHSLPHGAGRKWMRTECKGRLSHRFTPLQLSRTALGSR 326
Query: 367 V--ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ A+ +L+ EEAP+SYK++ V+++ ++G+ + +L+PV K
Sbjct: 327 IICANKQLIYEEAPQSYKSIETVIESMRSLGLIEVIARLKPVITYK 372
>gi|429218594|ref|YP_007180238.1| hypothetical protein Deipe_0903 [Deinococcus peraridilitoris DSM
19664]
gi|429129457|gb|AFZ66472.1| hypothetical protein Deipe_0903 [Deinococcus peraridilitoris DSM
19664]
Length = 462
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 38/261 (14%)
Query: 132 QVATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T+G NH+ E + S +G++ + ++ HSGSRGFG QVA
Sbjct: 209 QIGTSGSGNHFVEFGTL-----SIEKSDLGLQPGQYLALLSHSGSRGFGAQVAGHYTKVA 263
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTTPD 247
+ + ++E R+LA ++ + +A+ A + + VI++ A+ TP
Sbjct: 264 QNLHPKLDLEA--RKLAWLDMSREEGQAYWAAMELAGRYALANHEVIHERVARALKVTP- 320
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
V SHN+A ++ + DG++ +VHRKG+T A GQ +I
Sbjct: 321 ----LVAVSNSHNLAWRQQ-LPDGREA--IVHRKGATPA-------------AQGQLGII 360
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+M +V+ G KG + S HGAGR L R ++ R LD + V LE +G+++
Sbjct: 361 PGSMADPGFVVRG--KGNSQALESASHGAGRQLGRKQAERTLDRKAVARLLEERGVTLLG 418
Query: 368 ASPKLVMEEAPESYKNVTDVV 388
++EAP++YK + +V+
Sbjct: 419 GG----IDEAPQAYKRIEEVL 435
>gi|264678509|ref|YP_003278416.1| hypothetical protein CtCNB1_2374 [Comamonas testosteroni CNB-2]
gi|262209022|gb|ACY33120.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 492
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 125/282 (44%), Gaps = 43/282 (15%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD----ALVQMEK 191
+GNH+ E +VDE+YD+ AA G++ G V VMIH+GSR G V A Q +
Sbjct: 248 SGNHFLEFCVVDEVYDRHAAYAAGLKK-GDVTVMIHTGSRDVGFYVGRRWMDLARQQWPQ 306
Query: 192 AMK--RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+K + + LA + + A FN + + K+
Sbjct: 307 GIKHPQHGLYGLSGALAQDYLQAMGVAARYGWFNRM-------ALAELVRKELAGIAASD 359
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+I DV HN+ TE VHRKGST P H GQ LI G
Sbjct: 360 ASRLIVDVPHNVVMTEGEFN--------VHRKGST---PAH----------DGQWALIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG S+++ G G ++ S HGAGR + R +RR ++ L + Q I++R
Sbjct: 399 SMGDYSFLVKGL--GHEDWLRSCSHGAGRQVRRQDTRR---MKQPLVESVWQCITLR--- 450
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++EEAP +YK V V+ G+ + + +L+P K
Sbjct: 451 EERLIEEAPSAYKPVGPVLQAQEEAGLIRASVRLKPWLTFKA 492
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 39 QIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIV 98
++A L G GRS P + +R S LG+GNH+ E +V
Sbjct: 210 ELAECVGLQGFAGRS------RYAPEALLQARELLRPP-----SAADLGSGNHFLEFCVV 258
Query: 99 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
DE+YD+ AA G++ G V VMIH+GSR G V
Sbjct: 259 DEVYDRHAAYAAGLKK-GDVTVMIHTGSRDVGFYV 292
>gi|17548921|ref|NP_522261.1| hypothetical protein RS01749 [Ralstonia solanacearum GMI1000]
gi|17431171|emb|CAD17851.1| probable rtcb-like protein [Ralstonia solanacearum GMI1000]
Length = 379
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 162/386 (41%), Gaps = 52/386 (13%)
Query: 37 VKQIANVAALPGIVGRSV-GLPDVH---SVP-STQWLSDNTMRSSNIWKR--SPLTLGAG 89
++Q+ A LPG+ R V G+PD+H P + S + + I + L A
Sbjct: 27 IQQLQTTATLPGM--RHVAGMPDLHPERGYPVGAAFFSVGRLYPALIGNDIGCGMALWAT 84
Query: 90 NHYAEIQIVDEIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIV 146
A +D++ + ++D G++ + GF + T GNH+AE+Q +
Sbjct: 85 GLDANKARLDKLEKRLGNLDGPLDDAWGELATALAPAGTGFDAALGTIGGGNHFAELQQI 144
Query: 147 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLA 206
D YD AA +G+ Q+ +++HSGSRG G + + L D + +
Sbjct: 145 DTGYDDAAADALGLR-ARQLLLLVHSGSRGLGQAILDEQL----GTHGHDGLPQGSPE-- 197
Query: 207 CARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 266
CA + + A +F +L + D Q + DV HN+
Sbjct: 198 CAAYLARHDTAL--RFAKANRELIARRMLDRLHTQGRP---------LLDVHHNLVMPA- 245
Query: 267 HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQ 326
++G+ L HRKG+T P D PV+I G+ G SYV+ + +
Sbjct: 246 -TIEGEPGWL--HRKGAT----------PSD----AGPVVIPGSRGDFSYVVV--PQPSE 286
Query: 327 ETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ--GISIRVASPKLVMEEAPESYKNV 384
+ S HGAGR R++ + L + +L G + +L+ EEAPE+YK V
Sbjct: 287 HSLFSLAHGAGRKWMRSECKDRLARRFSPAQLNRTRLGSHVICEDKQLIYEEAPEAYKPV 346
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ G+ K +LRPV K
Sbjct: 347 DSVIAPLEQAGLVKVLARLRPVLTYK 372
>gi|78061773|ref|YP_371681.1| hypothetical protein Bcep18194_B0923 [Burkholderia sp. 383]
gi|77969658|gb|ABB11037.1| protein of unknown function UPF0027 [Burkholderia sp. 383]
Length = 463
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 142/349 (40%), Gaps = 80/349 (22%)
Query: 64 STQWLSDNTMRSSNIWKRSPL-TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMI 122
S ++ D + S +++ L T G+GNH+ E+Q+VD ++D+ AA + G+ V VMI
Sbjct: 194 SAKYAPDAHVGSREVFRDPCLGTPGSGNHFVELQVVDAVFDRHAAYRAGLAK-DDVVVMI 252
Query: 123 HSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
HSGSR G Y + +D W A E SG G ++A
Sbjct: 253 HSGSRDVG--------FYVGRRWMDRARAAWPAGVRHPE----------SGLYGLSGELA 294
Query: 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQF 242
+ LV M A + +A L+ V+ + K+
Sbjct: 295 REYLVAMGTAAR-----------------------YAW--------LNRVVLAEMVRKEL 323
Query: 243 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
+ ++ DV HN+ E M +HRKG+T A G
Sbjct: 324 AELTGETRSALVVDVPHNVVLRENGMN--------IHRKGATPA-------------RDG 362
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
LI G+MG S++ TG G + S HGAGR++ R RR Q S+
Sbjct: 363 DLALIPGSMGDASFLATGL--GHPDWLWSCSHGAGRSVRRQAVRRMRTEQA---PGTSRC 417
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+++R + +EEAPE+YK + V+D G+ + +L+P K
Sbjct: 418 VTLR---DERRIEEAPEAYKPIGPVIDAQEQAGLIRSAVRLKPWVTFKA 463
>gi|83747338|ref|ZP_00944379.1| RtcB protein [Ralstonia solanacearum UW551]
gi|83726038|gb|EAP73175.1| RtcB protein [Ralstonia solanacearum UW551]
Length = 379
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 169/387 (43%), Gaps = 54/387 (13%)
Query: 37 VKQIANVAALPGIVGRSV-GLPDVH---SVP-STQWLSDNTMRSSNIWKR--SPLTLGAG 89
++Q+ A LPG+ R V G+PD+H P + S + + I + L A
Sbjct: 27 IQQLQTTATLPGM--RHVAGMPDLHPGRGYPVGAPFFSVGCLYPALIGNDIGCGMALWAT 84
Query: 90 NHYAEIQIVDEIYDKWAASKMGIEDV--GQVCVMIHSGSRGFGHQVAT--AGNHYAEIQI 145
+ A +D++ + + ++D Q + +G+ GF + T GNH+AE+Q
Sbjct: 85 DLDANKANLDKLEKRLGNLDVPLDDTWREQATALAPAGT-GFDAALGTIGGGNHFAELQR 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQL 205
+D I+D AA +G+ + Q+ +++HSGSRG G + + L + D + +
Sbjct: 144 LDTIHDTAAADALGL-NARQLLLLVHSGSRGLGQAILDEQL----RTHGHDGLPQDSP-- 196
Query: 206 ACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 265
ACA + + A +F +L + D Q + DV HN+
Sbjct: 197 ACAAYLARHDTAL--RFAKANRELIARRMLDRLHAQGKP---------LLDVHHNLVTPA 245
Query: 266 EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM 325
++ G++ L HRKG+T P D PV+I G+ G SY++ +
Sbjct: 246 --VIKGERGWL--HRKGAT----------PSD----AGPVVIPGSRGDFSYLV--APQPS 285
Query: 326 QETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ--GISIRVASPKLVMEEAPESYKN 383
+ S HGAGR R++ + L + +L G + +L+ EEAPE+YK
Sbjct: 286 EHGLFSLAHGAGRKWMRSECKDRLSRRFSPAQLNRTRLGSHVICEDKQLIYEEAPEAYKP 345
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ V+ G+ K +LRPV K
Sbjct: 346 IESVIAPLEQAGLLKVIARLRPVLTYK 372
>gi|288927604|ref|ZP_06421451.1| RtcB protein [Prevotella sp. oral taxon 317 str. F0108]
gi|288330438|gb|EFC69022.1| RtcB protein [Prevotella sp. oral taxon 317 str. F0108]
Length = 390
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/381 (26%), Positives = 162/381 (42%), Gaps = 65/381 (17%)
Query: 44 AALPGIVGRSVG--LPDVHSVPSTQWLSDNTMRS---SNIWKRSPLTLGAGNHYAEIQIV 98
A +P VG +G + V S +S + +R S I +R PL + H+ E Q
Sbjct: 62 AVIPNAVGVDIGCGMCAVKSNYKVADISPDVLRKKIMSGIRQRIPLGM---VHHTEPQPE 118
Query: 99 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKM 158
+ + ++M + Q ++ G+ G GNH+ E+Q +E
Sbjct: 119 CYLPEGHEIARMEVVKRRQAAIVYEVGTLG-------GGNHFIELQKDEE---------- 161
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVAT--DALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
G + VM+HSGSR G V + L Q A + + L + S + K
Sbjct: 162 -----GNLWVMLHSGSRNLGKLVCEHYNKLAQQLNA-RWHTVVDEKLHLPFLPVGSAEFK 215
Query: 217 AFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ + D L M + + A + + +++HN A E H
Sbjct: 216 NYWAEMQYCIDFALCNRSLMMQRVQEVLADAL----PGIAFEPMINIAHNYAAWENHY-- 269
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
K ++VHRKG+T A +IP G+ GT SY++ G G +F
Sbjct: 270 --GKNVIVHRKGATLAREGMVGIIP-------------GSQGTASYIVEGL--GNAASFN 312
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
S HGAGR LSR + +LD Q + +LE++GI + S M+EA +YK++ +V+
Sbjct: 313 SCSHGAGRVLSRTAAIASLDMQAEVAQLEAKGIVHAIRSQD-DMQEATGAYKDIEEVI-- 369
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
+ + K KL P+AVIKG
Sbjct: 370 ANQTDLIKVKTKLLPIAVIKG 390
>gi|260596639|ref|YP_003209210.1| hypothetical protein CTU_08470 [Cronobacter turicensis z3032]
gi|260215816|emb|CBA28275.1| hypothetical protein CTU_08470 [Cronobacter turicensis z3032]
Length = 388
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 118/276 (42%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ L + D
Sbjct: 144 GNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHD 198
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
++ S + + Q LD V A + + D
Sbjct: 199 GLDAG----------SEEASEYLAQHQLA---LDFAVANRALIARRLLAHIKETGEPVLD 245
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + + Q L HRKG+T A + PV+I G+ G SY
Sbjct: 246 VNHNL--LAPYTLGDTQGWL--HRKGATPA--------------SLGPVVIPGSRGDYSY 287
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ T G E S HGAGR R + + L + +L RV +L+
Sbjct: 288 LVQPT--GGSEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLIY 345
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK++ V+ G+ K +L+PV +K
Sbjct: 346 EEAPQAYKSIESVMQCLTGAGLVKPLARLKPVLTLK 381
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
++G GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ A
Sbjct: 140 SVGGGNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQILRA 190
>gi|160935131|ref|ZP_02082514.1| hypothetical protein CLOBOL_00026 [Clostridium bolteae ATCC
BAA-613]
gi|158441862|gb|EDP19559.1| hypothetical protein CLOBOL_00026 [Clostridium bolteae ATCC
BAA-613]
Length = 373
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 161/391 (41%), Gaps = 74/391 (18%)
Query: 39 QIANVAALPGIVGRSVGLPDVH--SVP-STQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
Q+ V+ LPG+V ++VGLPD+H +P T LS + + + + G +
Sbjct: 39 QLLAVSRLPGVV-KAVGLPDLHPGRIPVGTAVLSRGVLYPHLL--GNDIGCGMSLFDTGV 95
Query: 96 QIVDEIYDKWAASKMGIEDVGQV---------CVMIHSGSRGFGHQVATAGNHYAEIQIV 146
+ +KW + + ++ + C + G+ G GNH+AE Q V
Sbjct: 96 KKKKFKQEKWVSRLEAVRELEDIPFSSPYEEECPIRDLGTLG-------GGNHFAEFQCV 148
Query: 147 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIET----ND 202
+ IYD+ AA +G+ ++ +++H GSRG+G ++ + V A + E +D
Sbjct: 149 ERIYDQEAAGSLGL-CADRILLLVHCGSRGYGQEILSRFWVPEGLADGSEQAEAYMAEHD 207
Query: 203 RQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIA 262
R L A +N+ A Q K + ++ D HN
Sbjct: 208 RALRWA----VRNRRAAAQ------------------KLLAWLGGASEPELLMDSCHNYL 245
Query: 263 KTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE 322
E DG L+HRKGS A + V+I G+ G+ +YV E
Sbjct: 246 ---ERTKDG-----LLHRKGSVSA--------------SKGAVVIPGSRGSLTYVCIPRE 283
Query: 323 KGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEEAPES 380
+ S HGAGR +R+ + +D + + + G+ RV L+ EAPE+
Sbjct: 284 D-TAVSLNSLSHGAGRKWARSICKSRIDQKYDRDSIRCTGLKSRVVCHDTNLLFAEAPEA 342
Query: 381 YKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
YKNV V+ G+ LRP+ KG
Sbjct: 343 YKNVEQVMGVLQEYGLIDIAATLRPLITFKG 373
>gi|423127545|ref|ZP_17115224.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5250]
gi|376394584|gb|EHT07234.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5250]
Length = 379
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 125/284 (44%), Gaps = 56/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV--------ATDALVQ 188
GNH+AE+Q VD + D+ + G+ D + +++HSGSRG G + + D L +
Sbjct: 135 GNHFAELQQVDRVIDRQRLQQAGL-DAQHLLLLVHSGSRGLGQSILQRHITAFSHDGLAE 193
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
+ A +D + + LA AR+N +I +Q
Sbjct: 194 -DSAAAQDYLAEHQDALAFARVNRQ-------------------LIATRILQQVRA---- 229
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
D + DV+HN E V+G+Q L HRKG+T P D L V+I
Sbjct: 230 -DGQNVLDVAHNF--VEARSVNGRQGWL--HRKGAT----------PDDRGL----VIIP 270
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+ G S+++ +ET S HGAGR R + L + +L + RV
Sbjct: 271 GSRGDHSWLVHPVVS--EETLNSLAHGAGRKWMRTDCKGRLSGKYSAAQLARTELGSRVI 328
Query: 369 --SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ EEAP++YK+V V + G+ + +LRP+ +K
Sbjct: 329 CRDRQLIYEEAPQAYKSVESVFNCLVQAGLVEPIARLRPLLTLK 372
>gi|429100254|ref|ZP_19162228.1| Protein with similarity to RtcB [Cronobacter turicensis 564]
gi|426286903|emb|CCJ88341.1| Protein with similarity to RtcB [Cronobacter turicensis 564]
Length = 379
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 118/276 (42%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ L + D
Sbjct: 135 GNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQI----LRAHVERFSHD 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
++ S + + Q LD V A + + D
Sbjct: 190 GLDAG----------SEEASEYLAQHQQA---LDFAVANRALIARRLLAHIKETGEPVLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + + Q L HRKG+T A + PV+I G+ G SY
Sbjct: 237 VNHNL--LAPYTLGDTQGWL--HRKGATPA--------------SLGPVVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ T G E S HGAGR R + + L + +L RV +L+
Sbjct: 279 LVQPT--GGSEALDSLAHGAGRKWMRTECKGRLSGKFSPAQLSRTAFGSRVICRDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK++ V+ G+ K +L+PV +K
Sbjct: 337 EEAPQAYKSIESVMQCLTGAGLVKPLARLKPVLTLK 372
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
++G GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ A
Sbjct: 131 SVGGGNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQILRA 181
>gi|333978935|ref|YP_004516880.1| hypothetical protein Desku_1497 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822416|gb|AEG15079.1| protein of unknown function UPF0027 [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 384
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 57/286 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EIQ +D V +M+HSGSR FG +VA R
Sbjct: 145 GNHFIEIQR---------------DDQDHVWIMLHSGSRNFGKKVAD--------YYNRL 181
Query: 197 NIETNDR---------QLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFNTT 245
I N+R QLA +++++ + + A Q+ + + A + ++
Sbjct: 182 AINLNERYGPPVPREWQLAYLPLDTHEGQNYLAAMQYCLEFARENRAHMMKAILEICHSL 241
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
D DV HN A E+H G+Q ++VHRKG+ RA V
Sbjct: 242 LPDFTWGEELDVHHNYAFLEKHF--GQQ--VMVHRKGAVRAV---------------GDV 282
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
++ G+MG+ SY+ G E+F S HGAGR + R ++RR + ++V+ ++++ G+ +
Sbjct: 283 IVPGSMGSPSYICRGLAN--PESFASCSHGAGRVMGRNEARRRIPVEKVIKEMQALGVEL 340
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A + EE ++YK++ V++ + + +L+P+ V+KG
Sbjct: 341 FKAKKGDLAEECRQAYKDIDQVMEDQR--DLVEIKIRLQPLGVVKG 384
>gi|390948870|ref|YP_006412629.1| release factor H-coupled RctB family protein [Thiocystis violascens
DSM 198]
gi|390425439|gb|AFL72504.1| release factor H-coupled RctB family protein [Thiocystis violascens
DSM 198]
Length = 384
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 162/397 (40%), Gaps = 74/397 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLT----LGAGNHY 92
++Q+ AALPG+ +VGLPD+H P + S I+ P +G G
Sbjct: 20 LRQLEQTAALPGMRA-AVGLPDLH--PGKGYPIGAAFLSERIY---PALVGNDIGCGMAL 73
Query: 93 AEIQIVDEIYDKWAASK--MGIE-----DVGQVCVMIHSGSRGFGHQVAT--AGNHYAEI 143
+ + + A++ G+E D+ F + T GNH+AE+
Sbjct: 74 WQTDLPTRKFKPARAAERLQGLEGPWDGDLAAWRAARDLAPTDFDTALGTIGGGNHFAEL 133
Query: 144 QIVDEIYDKWAASKMGIE-DVGQVCVMIHSGSRGFGHQVATDAL-------VQMEKAMKR 195
Q V+ + D A + G+E D +V +++HSGSRG G + A+ + E R
Sbjct: 134 QAVETVLD--ATAFAGLELDSDRVLLLVHSGSRGLGEAILRGAIDSQGHQGLDPEAPPAR 191
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIY 255
D + +D+ L A N L + DA D
Sbjct: 192 DYLGRHDQALRWADANRR---------------LIAERLLDALGA---------DAERRL 227
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
DV HN+ + VD + L +HRKG+ P D PV+I G+ G+ S
Sbjct: 228 DVWHNLVQP----VDWHGERLWLHRKGAA----------PADRG----PVVIPGSRGSLS 269
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLV 373
Y++ + + + S HGAGR R ++R L ++ L + + +V +L+
Sbjct: 270 YLVQPSAES-DLSLRSLAHGAGRKWKRGEARGRLSARQRPEDLRTTALGGQVICEDKELL 328
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+EAPESYK + V+ G+ LRPV K
Sbjct: 329 YDEAPESYKGIERVIADLVEAGLCTVIATLRPVLTYK 365
>gi|425304205|ref|ZP_18693991.1| putative PLP-dependent transferase [Escherichia coli N1]
gi|408231489|gb|EKI54757.1| putative PLP-dependent transferase [Escherichia coli N1]
Length = 465
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 126/279 (45%), Gaps = 37/279 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL--VQMEKAM 193
+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V + + E +
Sbjct: 221 SGNHFIELQVVDSVIDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRRWMDRARAEWPI 279
Query: 194 KRDNIETNDRQLACARINSN-KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ LA + A ++ ++ FA F+ D H
Sbjct: 280 GHKHPQSGLYGLAGGLAEEYLQAMGMAARYAWLNRVTIAEMVRVCFADLFHQD----DSH 335
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++ DV HNI E M +HRKG+T P H G LI G+MG
Sbjct: 336 LVVDVPHNIILREHEMN--------IHRKGAT---PAH----------AGALALIPGSMG 374
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
+++ G G E S HGAGR+ R ++ R+ +E + L Q +++R +
Sbjct: 375 DYTWLAVGC--GNPEWLWSCSHGAGRS-QRRQAMRSRATEE--STLPWQCVTLR---EER 426
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EEAP +YK++ V++ G+ + + RP KG
Sbjct: 427 RLEEAPAAYKDIAPVIEAQQEAGLIQPAVRFRPWLTFKG 465
>gi|452877240|ref|ZP_21954546.1| hypothetical protein G039_08872 [Pseudomonas aeruginosa VRFPA01]
gi|452185996|gb|EME13014.1| hypothetical protein G039_08872 [Pseudomonas aeruginosa VRFPA01]
Length = 379
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 169/387 (43%), Gaps = 54/387 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ AAL G+ R VGLPD+H P + S+ + + + +G G E
Sbjct: 27 IQQLQTTAALDGMQ-RVVGLPDLH--PGRGYPVGAAFFSAGRFYPALVGNDIGCGMALWE 83
Query: 95 IQIV------DEIYDKWAASKMGIEDVGQVCV-MIHSGSRGFGHQVAT--AGNHYAEIQI 145
+V D++ + + ++D C+ + +R + T GNH+AE+Q
Sbjct: 84 TGLVPGKLSADKLEKRLGNLDLPLDDSWHDCIEALELPAREHWRALGTIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQL 205
V+ ++D+ A +G+ D G++ +++HSGSRG G A++Q E + D L
Sbjct: 144 VETVFDRAALHALGL-DAGRLQLLVHSGSRGLGQ-----AILQ-EHVSLHGHAGLPDGSL 196
Query: 206 ACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 265
A + +A +F L I + D L++ DV+HN+
Sbjct: 197 EAAAYLARHAEAL--RFAEGNRQLIARRILE------RLRCDGLEL---LDVNHNLVAAA 245
Query: 266 EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM 325
+ VDG L RKG+T P D V+I G+ G SY++ +
Sbjct: 246 Q--VDGVHGWL--QRKGAT----------PADQG----AVVIPGSRGDYSYLVEPLPGAL 287
Query: 326 QETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEEAPESYKN 383
+ S HGAGR R + R L + +++L + RV +L+ EEAPE+YK
Sbjct: 288 --SLFSLAHGAGRKWQRGECRERLSARFSVDQLGRTRLGSRVICGDRQLIYEEAPEAYKG 345
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ VV G+ + +L+PV K
Sbjct: 346 IDSVVGALLEAGLLRLVARLKPVLTYK 372
>gi|386336033|ref|YP_006032203.1| RTCB protein [Ralstonia solanacearum Po82]
gi|334198483|gb|AEG71667.1| RTCB protein [Ralstonia solanacearum Po82]
Length = 379
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 133/298 (44%), Gaps = 43/298 (14%)
Query: 117 QVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 174
Q + +G+ GF + T GNH+AE+Q +D ++D AA +G+ + Q+ +++HSGS
Sbjct: 114 QAAALAPAGT-GFDAALGTIGGGNHFAELQRIDTVHDNAAADALGL-NARQLLLLVHSGS 171
Query: 175 RGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVI 234
RG G + + L +A D + + ACA + + A +F +L +
Sbjct: 172 RGLGQAILDEQL----RAHGHDGLPQDSH--ACAAYLARHDTAL--RFAKANRELIARRM 223
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
D + + DV HN+ ++ G++ L HRKG+T
Sbjct: 224 LDRLHARGKP---------LLDVHHNLVTPA--IIKGERGWL--HRKGAT---------- 260
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P D PV+I G+ G SY++ + + S HGAGR R++ + L +
Sbjct: 261 PSD----AGPVVIPGSRGDFSYLVA--PQPSEHGLFSLAHGAGRKWMRSECKDRLSRRFS 314
Query: 355 LNKLESQ--GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L G + +L+ EEAPE+YK + V+ G+ K +LRPV K
Sbjct: 315 PAQLNRTRLGSHVICEDKQLIYEEAPEAYKPIDSVIAPLEQAGLLKVIARLRPVLTYK 372
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T+G GNH+AE+Q +D ++D AA +G+ + Q+ +++HSGSRG G +
Sbjct: 131 TIGGGNHFAELQRIDTVHDNAAADALGL-NARQLLLLVHSGSRGLGQAI 178
>gi|313111590|ref|ZP_07797389.1| hypothetical protein PA39016_003370065 [Pseudomonas aeruginosa
39016]
gi|386069133|ref|YP_005984437.1| hypothetical protein NCGM2_6248 [Pseudomonas aeruginosa NCGM2.S1]
gi|310883891|gb|EFQ42485.1| hypothetical protein PA39016_003370065 [Pseudomonas aeruginosa
39016]
gi|348037692|dbj|BAK93052.1| hypothetical protein NCGM2_6248 [Pseudomonas aeruginosa NCGM2.S1]
Length = 379
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 124/276 (44%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQEQVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LAC A A +F L I + D L++ D
Sbjct: 194 GSLEASAYLAC--------HADALRFAEGNRQLIARRILE------RLRCDGLEL---LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ + VDG L HRKG+T P D + ++I G+ G SY
Sbjct: 237 INHNLVAPAQ--VDGVDGWL--HRKGAT----------PADQGV----LVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 279 LVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAI 178
>gi|386847672|ref|YP_006265685.1| hypothetical protein ACPL_2722 [Actinoplanes sp. SE50/110]
gi|359835176|gb|AEV83617.1| uncharacterized protein [Actinoplanes sp. SE50/110]
Length = 386
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 36/258 (13%)
Query: 161 EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF-- 218
++ G+V + +HSGSRG G+++A+ + M R I+ DR LA +++ A+
Sbjct: 157 DESGRVWLFLHSGSRGVGNKIASHHIQVARDLMDRRGIDLPDRDLAYLEEGTDEFDAYLT 216
Query: 219 ----AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 274
A+ F D M + + FA F P ++ HN + E H +
Sbjct: 217 ELRWAQNFALANRDEMMDRVIECFA-DFAGGP--VEQRDRVQCHHNYTEQESHY----GE 269
Query: 275 TLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH 334
T+ + RKG+ A G P LI G+MG SYV+TG +G E S+ H
Sbjct: 270 TVWLSRKGAINA-------------AKGVPGLIPGSMGDASYVVTG--RGNAEALNSSPH 314
Query: 335 GAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVV-DTCHA 393
GAGRA SR+K+RR +++ + +GI R ++E P++YK + V+ D
Sbjct: 315 GAGRAYSRSKARRTFTREQLRTAM--KGIEYR--DTDAFLDEIPQAYKPIDTVMRDAADL 370
Query: 394 VGISKKTFKLRPVAVIKG 411
V I LR + +KG
Sbjct: 371 VTIRH---TLRQLVNVKG 385
>gi|386743717|ref|YP_006216896.1| hypothetical protein S70_11790 [Providencia stuartii MRSN 2154]
gi|384480410|gb|AFH94205.1| hypothetical protein S70_11790 [Providencia stuartii MRSN 2154]
Length = 378
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 131/276 (47%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE QI+D+I++ + ++ G+ + +++HSGSRG G +++ R
Sbjct: 135 GNHFAEFQIIDKIFNDESIAQSGLNKKCAL-LLVHSGSRGLG------------QSILRQ 181
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
++E + N K A Q + +L+ +I +Q + + D
Sbjct: 182 HVENHSHNGLEEHSNDAKAYLEAHQHALSFAELNRQLIGLRMLQQVKAKGE-----MALD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ E ++G Q L HRKG+T P D + V+I G+ G SY
Sbjct: 237 VNHNL--VEPCTINGIQGWL--HRKGAT----------PSDKGM----VIIPGSRGDFSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ + + + S HGAGR R + + L ++ +L + RV A+ +L+
Sbjct: 279 LVL--PQASEVSLNSLAHGAGRKWMRTECKGRLSHRYTPLQLSRTALGSRVICANKQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP+SYK++ V+++ G+ + +LRP+ K
Sbjct: 337 EEAPQSYKSIETVIESMVGAGLIEVIARLRPLLTYK 372
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 56 LPDVHSVPSTQWLSDNT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGI 112
+PD S P +WL ++ M+S + + S ++G GNH+AE QI+D+I++ + ++ G+
Sbjct: 103 MPD--SAP-LEWLDEHVPHEMKSHH-FMSSLGSIGGGNHFAEFQIIDKIFNDESIAQSGL 158
Query: 113 EDVGQVCVMIHSGSRGFGHQV 133
+ +++HSGSRG G +
Sbjct: 159 NKKCAL-LLVHSGSRGLGQSI 178
>gi|405372168|ref|ZP_11027432.1| Protein RtcB [Chondromyces apiculatus DSM 436]
gi|397088541|gb|EJJ19522.1| Protein RtcB [Myxococcus sp. (contaminant ex DSM 436)]
Length = 474
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 35/279 (12%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q V+ + D+ A + G+ + GQ+ MIHSGSR G V + KA +
Sbjct: 225 GNHFVEVQRVEAVEDRGRAWRWGVRE-GQLAFMIHSGSRDVGKHVGVAWQERARKAWPQG 283
Query: 197 NI--ETNDRQLACARINSN--KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
++ LA R+ S + +A A + L ++ + F D++
Sbjct: 284 TPLPDSGILPLADERLVSEYLEAEATAANYAFLNRLLLAELLRQTLRELFG----DVEAP 339
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++YDV HN+ E + RKG+ P + QPV+I G+MG
Sbjct: 340 LVYDVPHNLTLPHEGG--------WLARKGAC----------PAGVE---QPVIIPGSMG 378
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSR-AKSRRNLDYQEVLNKLESQGISIRVASPK 371
S+++ G G S HGAGRA SR + SR D+++ + L G+ +
Sbjct: 379 ATSFLMVGC--GDARALESASHGAGRARSRFSLSRGGADHRD--SALGLTGVDCVTLRAE 434
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+EEAP +YK + VVD GI ++ +L P+ K
Sbjct: 435 RRVEEAPAAYKPIRPVVDAQVEAGIVREVARLSPLLTFK 473
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 67 WLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 126
W ++ R + T+G GNH+ E+Q V+ + D+ A + G+ + GQ+ MIHSGS
Sbjct: 203 WAPESFTREGVVRDAGLATIGGGNHFVEVQRVEAVEDRGRAWRWGVRE-GQLAFMIHSGS 261
Query: 127 RGFGHQVATA 136
R G V A
Sbjct: 262 RDVGKHVGVA 271
>gi|381159470|ref|ZP_09868702.1| release factor H-coupled RctB family protein [Thiorhodovibrio sp.
970]
gi|380877534|gb|EIC19626.1| release factor H-coupled RctB family protein [Thiorhodovibrio sp.
970]
Length = 410
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 162/403 (40%), Gaps = 78/403 (19%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLG-----AGNH 91
V+Q+ A LPG+ +VGLPD+H P T + S ++ P +G
Sbjct: 30 VRQLEQTARLPGMRA-AVGLPDLH--PGTGYPIGAAFLSELVY---PALVGNDIGCGMGL 83
Query: 92 YAEIQIVDEIYDKWAASKM-GIE-----DVGQVCVMIHSGSRGFGHQVAT--AGNHYAEI 143
+ Q + + + AA ++ G+E D+ F + T GNH+AEI
Sbjct: 84 WQTDQAMRKFKSERAAERLSGLEGPWDGDLDGWRAEQGLAPSAFDQALGTIGGGNHFAEI 143
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM-------EKAMKRD 196
Q V E+ D A + + + D ++ +++HSGSRG G V + Q RD
Sbjct: 144 QAVAEVLDATAFAALNL-DPERLLLLVHSGSRGLGESVLRAVIDQHGHQGLAPAATAARD 202
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
++ +D + A +N+ + N +D + D
Sbjct: 203 YLQAHDHAVHWA--EANRRLIATRLLNAL----------------------GMDAERLLD 238
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V HN+ + +D +TL +HRKG+ P D PV+I G+ GT SY
Sbjct: 239 VWHNLVQP----IDWAGETLWLHRKGAA----------PADRG----PVVIPGSRGTLSY 280
Query: 317 VLTGTEK-------GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA- 368
++ + + S HGAGR R ++R L + L + +V
Sbjct: 281 LVEPLLQSRLPFAPATDPSLRSLAHGAGRKWKRGEARPRLSTLQRPEDLRKTALGGQVIC 340
Query: 369 -SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK V VV G+ + LRPV K
Sbjct: 341 DDKELLYDEAPEAYKAVDRVVADLVDAGLCRVIATLRPVLTYK 383
>gi|381181959|ref|ZP_09890785.1| hypothetical protein KKC_01207 [Listeriaceae bacterium TTU M1-001]
gi|380318162|gb|EIA21455.1| hypothetical protein KKC_01207 [Listeriaceae bacterium TTU M1-001]
Length = 403
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 125/289 (43%), Gaps = 56/289 (19%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T GNH+ E Q ++ G +C+M+HSGSR G + T Q
Sbjct: 149 YQIGTLGGGNHFIEFQE---------------DEKGYLCIMLHSGSRHLGASICTH-FDQ 192
Query: 189 MEKAMKRDNIET--NDRQLACARINSNKNKAFAKQFNTTPDDLDMH---VIYDAFAKQFN 243
+ KA ++ LA S + KA+ + N + ++ A
Sbjct: 193 VAKAANEKWYSRLRDENALAFLPTQSEEGKAYIEWMNFALQYAHFNRCTMLNKAMEITCE 252
Query: 244 TTPDDLDMHVIYD----VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQ 299
+L+ V + HN A+ E H + + VHRKG+T A
Sbjct: 253 VARQELNQKVEFKNPIHCHHNYAQLETHY----DENVYVHRKGATSA------------- 295
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
G+ +I G MG+ SY+ G G +E+F S+ HGAGR SR K++ N +EVL LE
Sbjct: 296 KNGELGIIPGAMGSKSYITMGL--GNKESFYSSSHGAGRNFSRTKAKANFPAKEVLKDLE 353
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDV----------VDTCHAVGISK 398
+Q + + + K V EE+ +YK++ V V T H +G+ K
Sbjct: 354 NQNVILGKTNLKDVAEESRHAYKDIDQVMQNQKELVTIVKTLHTLGVVK 402
>gi|421494429|ref|ZP_15941777.1| hypothetical protein MU9_2948 [Morganella morganii subsp. morganii
KT]
gi|455737908|ref|YP_007504174.1| Protein with similarity to RtcB [Morganella morganii subsp.
morganii KT]
gi|400191291|gb|EJO24439.1| hypothetical protein MU9_2948 [Morganella morganii subsp. morganii
KT]
gi|455419471|gb|AGG29801.1| Protein with similarity to RtcB [Morganella morganii subsp.
morganii KT]
Length = 378
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 54/388 (13%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVH---SVP-STQWLSDNTMRSSNIWKRSPLTLGAGNH 91
++Q+ A LPG+ + G+PD+H P + S+ + + + + G +
Sbjct: 26 AIQQLITTAQLPGMTAVA-GMPDLHPGRGYPVGAAFFSEGRFYPALVG--NDIGCGMALY 82
Query: 92 YAEIQIVDEIYDKWAASKMGIEDVGQV-----CVMIHSGSRGFGHQVAT--AGNHYAEIQ 144
E+++ DK + D V H S F +++ GNH+AE Q
Sbjct: 83 QTELKVSKLNADKAEKQLRSMHDHADADWLAEHVSDHFASHPFAASLSSVGGGNHFAEFQ 142
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D++ D + G+ D ++ +++HSGSRG G V + Q D + N +
Sbjct: 143 QIDKVCDDGLFAASGL-DKQRMVLLVHSGSRGLGQMVLRHHVEQF----SHDGLTENTPE 197
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
A + +++ Q N L M +Q T + I D++HN+
Sbjct: 198 -ATEYLAAHQQALDFAQHNRVLIALRM-------MQQLRTNGE-----AILDINHNL--V 242
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E V+G+ L HRKG+T PVD+ V+I G+ G SY++
Sbjct: 243 EACTVNGRNGWL--HRKGAT----------PVDHDY----VVIPGSRGDYSYLVK--PHA 284
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEEAPESYK 382
++ S HGAGR R + + L ++ +L + RV A+ +L+ EEAP+SYK
Sbjct: 285 TADSLYSLAHGAGRKWMRTECKGRLSHRYTPAQLSRTDLGSRVICANKQLIYEEAPQSYK 344
Query: 383 NVTDVVDTCHAVGISKKTFKLRPVAVIK 410
++ V+++ G+ +L+P+ K
Sbjct: 345 SIETVIESLSGAGLITVVARLKPLLTYK 372
>gi|429196350|ref|ZP_19188319.1| hypothetical protein STRIP9103_05776 [Streptomyces ipomoeae 91-03]
gi|428667956|gb|EKX67010.1| hypothetical protein STRIP9103_05776 [Streptomyces ipomoeae 91-03]
Length = 397
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 170/400 (42%), Gaps = 54/400 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G +
Sbjct: 27 LQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHS----GSRGFGHQVATAGNHYAEIQIVDEI-- 149
+ +++ + + IE V +H R +G A + + V E
Sbjct: 86 LTANDLPGDLSRLRSKIEQAIPVGRGMHDEPVDPGRLYGFGGAGWDGFWGRFEGVAEAVK 145
Query: 150 --YDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+D+ A +MG ++ VG V +M+HSGSR G ++A + +K
Sbjct: 146 FRHDR-AEKQMGTLGGGNHFVEVCVDSVGSVWLMLHSGSRNIGKELAEHHIGIAQKLPHN 204
Query: 196 DNIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
N+ D + A ++ + +N F A+++ + M ++ D K+F +
Sbjct: 205 QNLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKYNRSIMMALLKDVIRKEFKKAKPTFEP 264
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTM 311
+ HN E + DG LLV RKG+ RA + +IP G+M
Sbjct: 265 EI--SAHHNYVAEERY--DGMD--LLVTRKGAIRAGSGEYGIIP-------------GSM 305
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
GT SY++ G G ++ F S HGAGR +SR ++R ++ LE Q +
Sbjct: 306 GTGSYIVKGL--GNEKAFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDS 359
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 360 GVVDEIPGAYKPIEQVIDQQR--DLVQVVAKLKQVVCVKG 397
>gi|410085182|ref|ZP_11281902.1| Protein with similarity to RtcB [Morganella morganii SC01]
gi|409768391|gb|EKN52453.1| Protein with similarity to RtcB [Morganella morganii SC01]
Length = 378
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 167/388 (43%), Gaps = 54/388 (13%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVH---SVP-STQWLSDNTMRSSNIWKRSPLTLGAGNH 91
++Q+ A LPG+ + G+PD+H P + S+ + + + + G +
Sbjct: 26 AIQQLITTAQLPGMTAVA-GMPDLHPGRGYPVGAAFFSEGRFYPALVG--NDIGCGMALY 82
Query: 92 YAEIQIVDEIYDKWAASKMGIEDVGQV-----CVMIHSGSRGFGHQVAT--AGNHYAEIQ 144
E+++ DK + D V H S F +++ GNH+AE Q
Sbjct: 83 QTELKVSKLNADKAEKQLRSMHDHADADWLAEHVSDHFASHPFAASLSSVGGGNHFAEFQ 142
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D++ D + G+ D +V +++HSGSRG G V L + D + + +
Sbjct: 143 QIDKVCDDGLFAASGL-DKQRVILLVHSGSRGLGQMV----LRHHVEQFSHDGLTESTPE 197
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
A + FA Q N L M +Q T + I D++HN+
Sbjct: 198 AAEYLAAHQQALDFA-QHNRALIALRM-------MQQLRTNGE-----TILDINHNL--V 242
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E V+G+ L HRKG+T PVD+ V+I G+ G SY++
Sbjct: 243 EACTVNGRNGWL--HRKGAT----------PVDHDY----VVIPGSRGDYSYLVK--PHA 284
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEEAPESYK 382
++ S HGAGR R + + L ++ +L + RV A+ +L+ EEAP+SYK
Sbjct: 285 TADSLYSLAHGAGRKWMRTECKGRLSHRYTPAQLSRTDLGSRVICANKQLIYEEAPQSYK 344
Query: 383 NVTDVVDTCHAVGISKKTFKLRPVAVIK 410
++ V+++ G+ +L+P+ K
Sbjct: 345 SIETVIESLSGAGLITVVARLKPLLTYK 372
>gi|422015289|ref|ZP_16361888.1| hypothetical protein OOA_11073 [Providencia burhodogranariea DSM
19968]
gi|414099454|gb|EKT61095.1| hypothetical protein OOA_11073 [Providencia burhodogranariea DSM
19968]
Length = 378
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 168/388 (43%), Gaps = 54/388 (13%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRS----PLTLGAGNH 91
++Q+ A LP +V VG+PD+H P + S+ + + + G
Sbjct: 26 AIQQLQITANLPNMVS-VVGMPDLH--PGRGYPIGAAFFSAQRFYPALVGNDIGCGMSLF 82
Query: 92 YAEIQIVDEIYDKWAASKMGIEDVG-QVCVMIHSGSRGFGHQVATA------GNHYAEIQ 144
+ I+I DK+ + + DV Q + H + H + GNH+AE Q
Sbjct: 83 QSNIKIAKLNLDKFEKQLLTLSDVASQEWLDEHVPNSMKTHNFVASLSSIGGGNHFAEFQ 142
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
VD++ D + G+ Q+ +++HSGSRG G +++ R +IE ++
Sbjct: 143 AVDKVLDNERFEQSGLNK-KQLLLLVHSGSRGLG------------QSILRKHIEVHNHD 189
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
A + A Q +L+ +I +Q T D + D++HN+
Sbjct: 190 GLEAASKEAEAYLQAHQEALRFAELNRQLIGRRMLQQVKATGD-----MAIDINHNL--V 242
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E + +G L HRKG+T P D + V+I G+ G SY++ +
Sbjct: 243 EPYTFNGIDGWL--HRKGAT----------PSDRGM----VVIPGSRGDYSYLVV--PQA 284
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEEAPESYK 382
+ + S HGAGR R + + L ++ +L + RV A+ +L+ EEAP+SYK
Sbjct: 285 SEVSLNSLAHGAGRKWMRTECKGRLSHRYTPLQLSRTDLGSRVICANKQLIYEEAPQSYK 344
Query: 383 NVTDVVDTCHAVGISKKTFKLRPVAVIK 410
++ V+D+ G+ +L+PV K
Sbjct: 345 SIDTVIDSMVEAGLINVIARLKPVLTYK 372
>gi|418529672|ref|ZP_13095604.1| hypothetical protein CTATCC11996_08290 [Comamonas testosteroni ATCC
11996]
gi|371453192|gb|EHN66212.1| hypothetical protein CTATCC11996_08290 [Comamonas testosteroni ATCC
11996]
Length = 492
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 43/282 (15%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD----ALVQMEK 191
+GNH+ E +V+E+YD+ AA G+ G V VMIH+GSR G V A Q +
Sbjct: 248 SGNHFLEFCVVEEVYDRHAAYAAGLRK-GDVTVMIHTGSRDVGFYVGRRWMELARQQWPQ 306
Query: 192 AMK--RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+K + + LA + + A FN + + K+
Sbjct: 307 GIKHPQHGLYGLSGALAQDYLQAMGVAARYAWFNRM-------ALAELVRKELAGIAAPD 359
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+I DV HN+ TE VHRKGST P H GQ LI G
Sbjct: 360 ASRLIVDVPHNVVMTEGEFN--------VHRKGST---PAHE----------GQWALIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG S+++ G G ++ S HGAGR + R +RR ++ L + Q I++R
Sbjct: 399 SMGDYSFLVKGL--GHEDWLRSCSHGAGRQVRRQDTRR---MKQPLVESVWQCITLR--- 450
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++EEAP +YK V V+ G+ + + +L+P K
Sbjct: 451 EERLIEEAPSAYKPVGPVLQAQEEAGLIRASVRLKPWLTFKA 492
>gi|254420207|ref|ZP_05033931.1| Uncharacterized protein family UPF0027 [Brevundimonas sp. BAL3]
gi|196186384|gb|EDX81360.1| Uncharacterized protein family UPF0027 [Brevundimonas sp. BAL3]
Length = 405
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 70/302 (23%)
Query: 127 RGFGH-QVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDA 185
RGFGH GNH+ E+ +DE D W VM+HSGSRG G++ T
Sbjct: 157 RGFGHLGTLGTGNHFIEL-CLDEAGDVW--------------VMLHSGSRGVGNRFGTYF 201
Query: 186 LVQMEKAMKRDNIETNDRQLAC------ARINSNKNKAFAKQFNTTPDDLDMHV---IYD 236
+ + + M+R +I D+ LA ++ + ++A+++ ++ M +
Sbjct: 202 IERAKHEMRRWHINLPDQDLAYFPEGTDGFVDYVRAVSWAQKYARANREVMMDSVLGVLK 261
Query: 237 AFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPV 296
AF TT + ++ H HN E+H K + + RKG+ A
Sbjct: 262 AFWPDLETTQEAVNCH------HNYVSKEKHF----GKDVFLTRKGAVSA---------- 301
Query: 297 DYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLN 356
G+ +I G+MG S+++ G KG ++F + HGAGRA+SR +++R ++ +
Sbjct: 302 ---KDGELGIIPGSMGAKSFIVRG--KGNADSFCTCSHGAGRAMSRTEAKRRFTIEDHVR 356
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNV-------TDVVDTCHAVGISKKTFKLRPVAVI 409
E G+ R + V++E P +YK++ TD+++ H LR V +
Sbjct: 357 ATE--GVECRKDAE--VIDETPMAYKDIDAVIAAQTDLIEVVHT---------LRQVVCV 403
Query: 410 KG 411
KG
Sbjct: 404 KG 405
>gi|403309540|ref|XP_003945153.1| PREDICTED: tRNA-splicing ligase RtcB homolog, partial [Saimiri
boliviensis boliviensis]
Length = 56
Score = 84.3 bits (207), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/48 (81%), Positives = 42/48 (87%)
Query: 3 VEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV 50
VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV
Sbjct: 1 VEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIV 48
>gi|427707543|ref|YP_007049920.1| hypothetical protein Nos7107_2150 [Nostoc sp. PCC 7107]
gi|427360048|gb|AFY42770.1| protein of unknown function UPF0027 [Nostoc sp. PCC 7107]
Length = 479
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 125/279 (44%), Gaps = 30/279 (10%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V+ I ++ A GI + GQ+ MIHSGSR G + KA
Sbjct: 226 SGNHFVEVQQVERIENRSLAYAWGIRE-GQLTFMIHSGSRNVGKYIG-GMWRDRTKATWP 283
Query: 196 DNIETNDRQLACARINSNKN--KAFAKQFNTTPDD--LDMHVIYDAFAKQFNTTPDDLDM 251
++++ + Q+ ++S+ ++ K T + ++ ++ + + D++
Sbjct: 284 ESLKYPESQIFPLSVHSHPELVASYLKAEGTAANYGFINRLLLAELLRLRLRQVYGDVEA 343
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTM 311
++YD+ HNI E V RKG+ A+P GQPV+I G+M
Sbjct: 344 PLVYDLPHNITLPEGQG--------WVTRKGACPAYP-------------GQPVIIPGSM 382
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
G SY++ G KG S HGAGR SR R Q ++L G+ +
Sbjct: 383 GAYSYLMVG--KGNPAFCNSASHGAGRLRSRFDLSRQGACQ-TESELGLTGVDCITLREE 439
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+EEAP +YK + V+D G+ +L PV K
Sbjct: 440 RRIEEAPAAYKPIQSVIDIQVKAGMVDVVARLSPVLTFK 478
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T+G+GNH+ E+Q V+ I ++ A GI + GQ+ MIHSGSR G +
Sbjct: 223 TIGSGNHFVEVQQVERIENRSLAYAWGIRE-GQLTFMIHSGSRNVGKYI 270
>gi|410668692|ref|YP_006921063.1| hypothetical protein Tph_c23770 [Thermacetogenium phaeum DSM 12270]
gi|409106439|gb|AFV12564.1| hypothetical protein Tph_c23770 [Thermacetogenium phaeum DSM 12270]
Length = 413
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 55/296 (18%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+QV T GNH+ EIQ ++ G+ +M+HSGSR FG+++
Sbjct: 158 YQVGTLGGGNHFIEIQE---------------DEHGRAGLMVHSGSRNFGYKICN----H 198
Query: 189 MEKAMKRDNIETND-----RQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA 237
K + N LA ++S + + + A+ F L M + +
Sbjct: 199 FNKVARNLNARMGSPIPPSYDLAYLPVDSREGRQYLAWMQLAQDFAKENRSLIMKRVQEI 258
Query: 238 FAKQFNTTP--DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
F+ + ++ + + HN A E H K L VHRKG+ RA
Sbjct: 259 FSDYLSRYAGIQEVSLEPPVNCHHNYASRERHY----GKDLWVHRKGAIRAG-------- 306
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
G+ +I G MG+ SYV+ G G E+F S HGAGR SR K++ Q+V+
Sbjct: 307 -----RGEMGVIPGAMGSSSYVVEGL--GNPESFCSCSHGAGRLCSRKKAKETYPVQQVI 359
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ +G+++ V EE +YK++ V++ + + KL + V+KG
Sbjct: 360 EDLKQRGVTLGKHKKGDVAEECRMAYKDIDSVLE--QERDLVRPVLKLVTIGVVKG 413
>gi|325282400|ref|YP_004254941.1| hypothetical protein Deipr_0150 [Deinococcus proteolyticus MRP]
gi|324314209|gb|ADY25324.1| protein of unknown function UPF0027 [Deinococcus proteolyticus MRP]
Length = 467
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 35/259 (13%)
Query: 132 QVATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T+G NH+ E + K A ++G+E + V+ HSGSRGFG QVA
Sbjct: 215 QIGTSGSGNHFVEFGEL-----KVAGGELGLEAGEYLAVLSHSGSRGFGAQVAGHFTKLA 269
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
E KR ++ R+LA +++ + +A+ + N + +D + + +
Sbjct: 270 ESRHKR--LDPAARRLAWLGLDTEEGQAYWQAMNLAGRYALAN--HDQIHARLSRALGER 325
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + + SHN+A ++ V+G++ L+VHRKG+T A LIP G
Sbjct: 326 PLAQVSN-SHNLAWKQQ--VNGQE--LIVHRKGATPAEAGRLGLIP-------------G 367
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+M S+V+ G G E+ S+ HGAGR L R + R++ E+ L +G+++ +
Sbjct: 368 SMADPSFVVRGL--GNPESLSSSSHGAGRQLGRKAAERSVSKDEMQGYLRERGVTL-IGG 424
Query: 370 PKLVMEEAPESYKNVTDVV 388
+ +EAP++YK + DV+
Sbjct: 425 GR---DEAPQAYKRIEDVL 440
>gi|299530990|ref|ZP_07044403.1| hypothetical protein CTS44_09392 [Comamonas testosteroni S44]
gi|298720947|gb|EFI61891.1| hypothetical protein CTS44_09392 [Comamonas testosteroni S44]
Length = 492
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 125/282 (44%), Gaps = 43/282 (15%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD----ALVQMEK 191
+GNH+ E +V+E+YD+ AA G++ G V VMIH+GSR G V A Q +
Sbjct: 248 SGNHFLEFCVVEEVYDRHAAYAAGLKK-GDVTVMIHTGSRDVGFYVGRRWMELARQQWPQ 306
Query: 192 AMK--RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+K + + LA + + A FN + + K+
Sbjct: 307 GIKHPQHGLYGLSGVLAQDYLQAMGVAARYAWFNRM-------ALAELVRKELAGIAAPD 359
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+I DV HN+ TE VHRKGST P H GQ LI G
Sbjct: 360 ASRLIVDVPHNVVMTEGEFN--------VHRKGST---PAH----------DGQWALIPG 398
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG S+++ G G ++ S HGAGR + R +RR ++ L + Q I++R
Sbjct: 399 SMGDYSFLVKGL--GHEDWLRSCSHGAGRQVRRQDTRR---MKQPLVESVWQCITLR--- 450
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ ++EEAP +YK V V+ G+ + + +L+P K
Sbjct: 451 EERLIEEAPSAYKPVGPVLQAQEEAGLIRASVRLKPWLTFKA 492
>gi|399077327|ref|ZP_10752361.1| hypothetical protein PMI01_03453 [Caulobacter sp. AP07]
gi|398035554|gb|EJL28790.1| hypothetical protein PMI01_03453 [Caulobacter sp. AP07]
Length = 405
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 71/326 (21%)
Query: 103 DKWAASKMGIEDVGQVCVMIHSGS---RGFGH-QVATAGNHYAEIQIVDEIYDKWAASKM 158
+KWA K G + V V H + RGFGH GNH+ E+ +DE D W
Sbjct: 134 EKWAGLKEGYDAV----VAKHPKAAHPRGFGHLGTLGTGNHFIEL-CLDEAGDVW----- 183
Query: 159 GIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLAC------ARINS 212
VM+HSGSRG G++ T + + + M+R I D+ LA I+
Sbjct: 184 ---------VMLHSGSRGVGNRFGTYFIERAKHEMRRWYINLPDQDLAYFAEGSEGFIDY 234
Query: 213 NKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 272
+ ++A+++ ++ M + + F PD + + HN E+H
Sbjct: 235 VRAVSWAQKYARANREVMMDQVLAVLRRTF---PDLMVTQEAVNCHHNYVSREKHF---- 287
Query: 273 QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGST 332
K + + RKG+ A G+ +I G+MG S+++ G +G ++F +
Sbjct: 288 GKDVYLTRKGAVSA-------------KDGELGIIPGSMGAKSFIVRG--RGNPDSFCTC 332
Query: 333 CHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV-------T 385
HGAGRA+SR +++R + + + G+ R + V++E P +YK++ +
Sbjct: 333 SHGAGRAMSRTEAKRRFTMAD--HAAATAGVECRKDAE--VIDETPMAYKDIDAVMAAQS 388
Query: 386 DVVDTCHAVGISKKTFKLRPVAVIKG 411
D+VD H LR V +KG
Sbjct: 389 DLVDIVHT---------LRQVVCVKG 405
>gi|353237803|emb|CCA69767.1| hypothetical protein PIIN_03708 [Piriformospora indica DSM 11827]
Length = 501
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 125/288 (43%), Gaps = 34/288 (11%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ------ME 190
GNH+AEI V+ I D+ A MG+ + G++ V++H+GSRG G + D +E
Sbjct: 227 GNHFAEIVSVERIVDQEACDSMGVYE-GRLYVLVHTGSRGLGASILRDYTRSNANPYLIE 285
Query: 191 KAMKRDNIETNDRQLACARINSN--KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
+ +R + +D + AR N + ++ A F D D + AK P+
Sbjct: 286 EEERRVYLARHDHAVLWARANRDLVAHRIKACIFGGRGSDSDEQGEDEKEAKD-TAEPNY 344
Query: 249 LD----MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP 304
D + I DV+HN + DG +HRKG+ P D P
Sbjct: 345 KDYLSELEKILDVTHNSVTLTGYEHDGAFVDAYLHRKGAA----------PADRGFVPCP 394
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKS--RRNLDYQEVLNKLESQG 362
G+ G S+++ G Q + S HGAGR R RR Q L+S
Sbjct: 395 ----GSRGDFSWIVQPMGDGKQNAY-SLPHGAGRLHPRNAPSLRRGTADQLRTTALDSY- 448
Query: 363 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ P+L+++E PE+YK+V V+D G+++ LRP K
Sbjct: 449 --VVCTDPELLVQERPEAYKSVQAVIDDVEEAGVAEGVVVLRPYVTFK 494
>gi|227112371|ref|ZP_03826027.1| hypothetical protein PcarbP_05372 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 373
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 48/280 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +DEIY A + I D Q+ +++HSGSRG G +
Sbjct: 130 GNHFAELQQLDEIYQPDALHALHI-DPKQLLLLVHSGSRGLGQTI--------------- 173
Query: 197 NIETNDRQLACARINSNKNKAFA----KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+E + R+ + +N A A QF T + +I ++++T D
Sbjct: 174 -LEAHVREFGHQGLEANTPAAEAYLEQHQFALTFATHNRRLIAQRMLERWHTEGD----- 227
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
DV+HN+ + ++G L HRKG+T P D PV+I G+ G
Sbjct: 228 AALDVNHNLVTSA--TIEGISGWL--HRKGAT----------PADCG----PVIIPGSRG 269
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP-- 370
SY++ ++ S HGAGR R + + L + + +L RV
Sbjct: 270 DYSYIVQPIPHA--DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQDR 327
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK + V+ G+ +L+PV K
Sbjct: 328 QLIFQEAPEAYKPIDSVIGAMQQAGLITLIARLKPVLTYK 367
>gi|302382725|ref|YP_003818548.1| hypothetical protein Bresu_1614 [Brevundimonas subvibrioides ATCC
15264]
gi|302193353|gb|ADL00925.1| protein of unknown function UPF0027 [Brevundimonas subvibrioides
ATCC 15264]
Length = 406
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 77/328 (23%)
Query: 104 KWAASKMGIEDVGQVCVMIHSGS---RGFGH-QVATAGNHYAEIQIVDEIYDKWAASKMG 159
+WA K G + V V H + RGFGH GNH+ E+ +DE D W
Sbjct: 136 RWADLKAGYDAV----VEAHPKAAHPRGFGHLGTLGTGNHFIEL-CLDEAGDVW------ 184
Query: 160 IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLAC------ARINSN 213
VM+HSGSRG G++ T + + + M+R +I D+ LA I+
Sbjct: 185 --------VMLHSGSRGVGNRFGTYFIERAKHEMRRWHINLPDQDLAYFPEGTDGFIHYV 236
Query: 214 KNKAFAKQFNTTPDDLDMHV---IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ ++A+++ ++ M + AF TT + ++ H HN E H
Sbjct: 237 RAVSWAQKYARANREVMMDSVLGVLKAFWPDLETTQEAVNCH------HNYVSKERHF-- 288
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
K + + RKG+ A +IP G+MG S+++ G KG ++F
Sbjct: 289 --GKDVFLTRKGAVSAKLDELGIIP-------------GSMGAKSFIVRG--KGNADSFC 331
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV------ 384
+ HGAGRA+SR +++R ++ + E G+ R + V++E P +YK++
Sbjct: 332 TCSHGAGRAMSRTEAKRRFTVEDHVRATE--GVECRKDAE--VIDETPMAYKDIDAVIAA 387
Query: 385 -TDVVDTCHAVGISKKTFKLRPVAVIKG 411
TD+++ H LR V +KG
Sbjct: 388 QTDLIEVVHT---------LRQVVCVKG 406
>gi|422019083|ref|ZP_16365633.1| hypothetical protein OO9_10296 [Providencia alcalifaciens Dmel2]
gi|414103625|gb|EKT65199.1| hypothetical protein OO9_10296 [Providencia alcalifaciens Dmel2]
Length = 378
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 42/277 (15%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE Q VD+I + + G+ D ++ +++HSGSRG G + +E+
Sbjct: 135 GNHFAEFQAVDKILNTELFEQSGL-DKQKLLLLVHSGSRGLGQSILRQ---HVEQHSHNG 190
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
E +D A +N++++ Q N L M +Q+ D
Sbjct: 191 LDEYSDE--AATYLNAHQDALDFAQLNRQLIGLRMMQQVKTSGEQY------------LD 236
Query: 257 VSHNIAK-TEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
++HN+ + H +DG +HRKG+T P D + V+I G+ G S
Sbjct: 237 LNHNLVEPCRIHEIDG-----WLHRKGAT----------PADRGM----VIIPGSRGDYS 277
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLV 373
Y++ + + S HGAGR R + + L + +L + RV A+ +L+
Sbjct: 278 YLVAPVANEI--SLNSLAHGAGRKWMRTECKGRLSHHYTPLQLSRTSLGSRVICANKQLI 335
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP+SYK++ V+D+ VGI + +L PV K
Sbjct: 336 YEEAPQSYKSIDTVIDSMVDVGIIQVIARLTPVITYK 372
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 56 LPDVHSVPSTQWLSDNT--MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIE 113
L D+ S +WL ++ S+ + S ++G GNH+AE Q VD+I + + G+
Sbjct: 100 LSDMTDHASQEWLDEHVPDKMKSHRFMTSLSSIGGGNHFAEFQAVDKILNTELFEQSGL- 158
Query: 114 DVGQVCVMIHSGSRGFGHQV 133
D ++ +++HSGSRG G +
Sbjct: 159 DKQKLLLLVHSGSRGLGQSI 178
>gi|50122537|ref|YP_051704.1| hypothetical protein ECA3616 [Pectobacterium atrosepticum SCRI1043]
gi|49613063|emb|CAG76514.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 373
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 122/281 (43%), Gaps = 50/281 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +DEIY A + + I D Q+ +++HSGSRG G +
Sbjct: 130 GNHFAELQQLDEIYQPDALNTLHI-DPKQLLLLVHSGSRGLGQTI--------------- 173
Query: 197 NIETNDRQLACARINSNKNKAFA----KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+E + R+ I +N A A QF T + +I ++++T D
Sbjct: 174 -LEAHVREFGHQGIEANTPAAEAYLEQHQFALTFATHNRRLIAQRMLERWHTEGD----- 227
Query: 253 VIYDVSHNIAKTEE-HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTM 311
DV+HN+ + + G +HRKG+T P D PV+I G+
Sbjct: 228 AALDVNHNLVTSATIESISG-----WLHRKGAT----------PADCG----PVIIPGSR 268
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP- 370
G SY++ ++ S HGAGR R + + L + + +L RV
Sbjct: 269 GDYSYIVQPIPHA--DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQD 326
Query: 371 -KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK + V+ G+ +L+PV K
Sbjct: 327 RQLIFQEAPEAYKPIDSVIGAMQQAGLITLIARLKPVLTYK 367
>gi|288870878|ref|ZP_06115582.2| release factor H-coupled RctB family protein [Clostridium hathewayi
DSM 13479]
gi|288865628|gb|EFC97926.1| release factor H-coupled RctB family protein [Clostridium hathewayi
DSM 13479]
Length = 385
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 167/395 (42%), Gaps = 78/395 (19%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLT-LGAGNHYAEI 95
V Q+ VA LPG+V ++VGLPD+H P + + + +G G
Sbjct: 49 VDQLRGVAKLPGVV-KAVGLPDLH--PGKTPVGMAVLSRERFYPHLIGNDIGCGMSLFST 105
Query: 96 QIVDEIY--DKWAASKMGIEDVGQV---------CVMIHSGSRGFGHQVATAGNHYAEIQ 144
+ + + +KW I ++G + C + G+ G GNH+AE Q
Sbjct: 106 GVKQKKFKMEKWETRLNSIRELGDIPCDNPYEGFCPVKDLGTIG-------TGNHFAEFQ 158
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
++ +Y + A ++G+ + G++ +++HSGSRG+G ++ + E D+ E R
Sbjct: 159 CLEHVYREEEAERLGLLE-GRIMLLVHSGSRGYGQEI-LNRFYSPEGLP--DDGEEGSRY 214
Query: 205 LA---CARINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHN 260
LA A + + +N+ AK+ + Y + N + + HN
Sbjct: 215 LAEHDSAILWAGRNRMVTAKKL----------LAYLGVESEVNP---------LLESCHN 255
Query: 261 -IAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYV-L 318
+ +TEE + HRKGS V+I G+ G+ SYV +
Sbjct: 256 YLERTEEGWL---------HRKGSVST--------------KRGAVVIPGSRGSLSYVCV 292
Query: 319 TGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVMEE 376
+ M + S HGAGR +R+ + +D + + + S + RV L+ E
Sbjct: 293 PAADTAM--SLDSVSHGAGRKWARSICKSRIDRRYDRDSIRSTKLKSRVVCHDTNLLFAE 350
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
APE+YKNV V+ + G+ LRP+ KG
Sbjct: 351 APEAYKNVEQVIASLEDYGLIDVVATLRPLLTYKG 385
>gi|226357903|ref|YP_002787643.1| hypothetical protein Deide_3p01893 [Deinococcus deserti VCD115]
gi|226320146|gb|ACO48139.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 462
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 36/255 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E + A+ +G+ + ++ HSGSRGFG QVA Q+ + +
Sbjct: 215 SGNHFVEFGTL-----TLEAADLGLAPGQYIALLSHSGSRGFGAQVAGH-YTQVAQNLHP 268
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMH-VIYDAFAKQFNTTPDDLDMHV 253
D ++ + R+LA ++ ++ +A+ N L H VI+ A+ P V
Sbjct: 269 D-LDPDARKLAWLDMDRDEGQAYWTAMNLAGRYALANHEVIHARIARALGVKP-----LV 322
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
SHN+A ++ M DG++ ++VHRKG+T A GQ +I G+M
Sbjct: 323 TVRNSHNLA-WKQRMPDGRE--VIVHRKGATPAG-------------QGQLGIIPGSMAD 366
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
YV+ G KG + S HG+GR L R ++ R L V LE++ +++
Sbjct: 367 PGYVVRG--KGNTQALESASHGSGRLLGRKQAERELSRSAVKEYLEARDVTVMGGG---- 420
Query: 374 MEEAPESYKNVTDVV 388
++EAP++YKN+ V+
Sbjct: 421 VDEAPQAYKNIDRVM 435
>gi|403059882|ref|YP_006648099.1| release factor H-coupled RctB family protein [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402807208|gb|AFR04846.1| release factor H-coupled RctB family protein [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 373
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 48/280 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +DEIY + I D Q+ +++HSGSRG G +
Sbjct: 130 GNHFAELQQLDEIYQPDELHALHI-DPKQLLLLVHSGSRGLGQTI--------------- 173
Query: 197 NIETNDRQLACARINSNKNKAFA----KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+E + R+ + +N A A QF T + +I ++++T D
Sbjct: 174 -LEAHVREFGHQGLEANTPAAEAYLEQHQFALTFATHNRRLIAQRMLERWHTEGD----- 227
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
DV+HN+ + +DG L HRKG+T P D PV+I G+ G
Sbjct: 228 AALDVNHNLVTSA--TIDGISGWL--HRKGAT----------PADCG----PVIIPGSRG 269
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP-- 370
SY++ ++ S HGAGR R + + L + + +L RV
Sbjct: 270 DYSYIVQPIPHA--DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQDR 327
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK + V+ G+ +L+PV K
Sbjct: 328 QLIFQEAPEAYKPIDSVIGAMQQAGLITLIARLKPVLTYK 367
>gi|449138014|ref|ZP_21773318.1| protein belonging to Uncharacterized protein family UPF0027
[Rhodopirellula europaea 6C]
gi|448883369|gb|EMB13898.1| protein belonging to Uncharacterized protein family UPF0027
[Rhodopirellula europaea 6C]
Length = 159
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 8/159 (5%)
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQLTGQPVLIGGTM 311
++Y +SHNIA+ E +VD + VHRKG+TRA P HH L + +G P+L+ G
Sbjct: 1 MVYFISHNIARKE--IVD--NQPAWVHRKGATRAMPGGHHSLADTPFAKSGHPILLPGNP 56
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
S V+ E G + S HGAGR L R ++R LD V ++ +S I K
Sbjct: 57 RDGSAVMVADE-GASASCYSVNHGAGRVLGRRHAKRVLDQSTVDSEFDSNDILSNCR--K 113
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
++EAP +YK+ +V+ + + G++ + +L+ VIK
Sbjct: 114 YPIDEAPAAYKDFNEVLRSVKSAGLASEVARLKARFVIK 152
>gi|359429537|ref|ZP_09220561.1| hypothetical protein ACT4_025_00610 [Acinetobacter sp. NBRC 100985]
gi|358234998|dbj|GAB02100.1| hypothetical protein ACT4_025_00610 [Acinetobacter sp. NBRC 100985]
Length = 423
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 185 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 229
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K FN
Sbjct: 230 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQAAIKALATIIPKPFNAKL 289
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ A + +IP
Sbjct: 290 EAVNCH------HNYVQKEEHY----GEEVMVTRKGAVSAKLGQYGIIP----------- 328
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SRA+++R ++ + ++++G+ R
Sbjct: 329 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRAEAKRRFTVEDQI--VQTEGVECR 382
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV++ + + + LR V +KG
Sbjct: 383 --KDAAVIDEIPSAYKPIEDVMNA--QKDLVEVVYTLRQVVCVKG 423
>gi|283797691|ref|ZP_06346844.1| protein RtcB [Clostridium sp. M62/1]
gi|291074587|gb|EFE11951.1| hypothetical protein CLOM621_07726 [Clostridium sp. M62/1]
Length = 410
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 48/291 (16%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T GNH+ E+Q +E G + VMIHSGSR FG V D Q
Sbjct: 157 QIGTLGGGNHFIELQEDEE---------------GYLSVMIHSGSRHFGKAVC-DYFHQK 200
Query: 190 EKAMKRDNIET--NDRQLACARINSNKNKAFAKQFNTTPD-----DLDMHVIYDAFAKQF 242
+ + ++ +LA ++S + + + + D M + A +++
Sbjct: 201 ARELNARWYSQVPDEYRLAFLPLDSREGRQYLNWMQLSMDFAMENRAKMMLAVKAILEKW 260
Query: 243 NTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
DL + +++ HN A E H + + VHRKG+TRA
Sbjct: 261 IGKYTDLHLAFTEEINCHHNYAALENHY----GENVWVHRKGATRA-------------R 303
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
G+ +I G MG+CSY++ G KG E+F S+ HGAGR SR + +EV+ L
Sbjct: 304 EGELAVIPGAMGSCSYIVRG--KGNPESFCSSSHGAGRRYSRKGAMSAFSCEEVIKDLRE 361
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + + + V EE+ +YK++ +V+ + + + KL V V+KG
Sbjct: 362 KQVILGKRNKSDVAEESRFAYKDIDEVMK--NQSDLVEPVKKLHTVGVVKG 410
>gi|422007118|ref|ZP_16354104.1| hypothetical protein OOC_03202 [Providencia rettgeri Dmel1]
gi|414097008|gb|EKT58663.1| hypothetical protein OOC_03202 [Providencia rettgeri Dmel1]
Length = 378
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 42/277 (15%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE Q VDEI + S G+ Q+ +++HSGSRG G +++ R
Sbjct: 135 GNHFAEFQAVDEILNPELFSLSGLNK-QQLLLLVHSGSRGLG------------QSILRQ 181
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
++E + KN A Q L+ +I +Q + + D
Sbjct: 182 HVENHSHDGLIDSSQDAKNYLEAHQNALDFAQLNRQMIGLRMLQQVKSKGK-----CVLD 236
Query: 257 VSHNIAKT-EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
++HN+ ++ + + +DG +HRKG+T P D L V+I G+ G S
Sbjct: 237 LNHNLVESCKINGIDG-----WIHRKGAT----------PSDRGL----VVIPGSRGDYS 277
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLV 373
Y+++ + + S HGAGR R + + L ++ +L + RV A+ +L+
Sbjct: 278 YLVS--PQPSEVCLNSLAHGAGRKWMRTECKGRLSHKYTPIQLSRTALGSRVICANKQLI 335
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP+SYK++ V+++ +GI + +L+PV K
Sbjct: 336 YEEAPQSYKSIDTVIESMVNIGIIQVVARLKPVITYK 372
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
++G GNH+AE Q VDEI + S G+ Q+ +++HSGSRG G +
Sbjct: 131 SIGGGNHFAEFQAVDEILNPELFSLSGLNK-QQLLLLVHSGSRGLGQSI 178
>gi|442318643|ref|YP_007358664.1| hypothetical protein MYSTI_01648 [Myxococcus stipitatus DSM 14675]
gi|441486285|gb|AGC42980.1| hypothetical protein MYSTI_01648 [Myxococcus stipitatus DSM 14675]
Length = 474
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 121/293 (41%), Gaps = 43/293 (14%)
Query: 127 RGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL 186
R G GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSGSR G V
Sbjct: 215 RDAGLATIGGGNHFVEVQRVEAVEDRARAWAWGVRE-GQLAFMIHSGSRDVGKHVGVAWK 273
Query: 187 VQMEKAMKRDN-------IETNDRQLACARINSNKNKA-FAKQFNTTPDDLDMHVIYDAF 238
+ KA + + D L + + A +A +L + + F
Sbjct: 274 DRARKAWPQGAPFPDSGILPLADETLVSQYLEAEATAANYAFLNRLLLAELLRQTLRELF 333
Query: 239 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
D++ ++YDV HNI E + RKG+ A
Sbjct: 334 G--------DVEAPLVYDVPHNITLPHEGG--------FLARKGACPA------------ 365
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSR-AKSRRNLDYQEVLNK 357
QPV+I G+MG S+++ G G S HGAGRA SR + +R D E
Sbjct: 366 -AAEQPVIIPGSMGATSFLMVGC--GDARALESASHGAGRARSRFSLARAGADQSEA--A 420
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
L +G+ + +EEAP +YK + VVD+ GI ++ +L P+ K
Sbjct: 421 LGLKGVDCISLREERRVEEAPAAYKPIRPVVDSQVEAGIVREVARLSPLLTFK 473
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 67 WLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 126
W + R + T+G GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSGS
Sbjct: 203 WAPEALTREGVVRDAGLATIGGGNHFVEVQRVEAVEDRARAWAWGVRE-GQLAFMIHSGS 261
Query: 127 RGFGHQVATA 136
R G V A
Sbjct: 262 RDVGKHVGVA 271
>gi|295092079|emb|CBK78186.1| Uncharacterized conserved protein [Clostridium cf. saccharolyticum
K10]
Length = 410
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 48/291 (16%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T GNH+ E+Q +E G + VMIHSGSR FG V D Q
Sbjct: 157 QIGTLGGGNHFIELQEDEE---------------GYLSVMIHSGSRHFGKAVC-DYFHQK 200
Query: 190 EKAMKRDNIET--NDRQLACARINSNKNKAFAKQFNTTPD-----DLDMHVIYDAFAKQF 242
+ + ++ +LA ++S + + + + D M + A +++
Sbjct: 201 ARELNARWYSQVPDEYRLAFLPLDSREGRQYLNWMQLSMDFAMENRAKMMLAVKAILEKW 260
Query: 243 NTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL 300
DL + +++ HN A E H + + VHRKG+TRA
Sbjct: 261 IGKYTDLHLAFTEEINCHHNYAALENHY----GENVWVHRKGATRA-------------R 303
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
G+ +I G MG+CSY++ G KG E+F S+ HGAGR SR + +EV+ L
Sbjct: 304 EGELAVIPGAMGSCSYIVRG--KGNPESFCSSSHGAGRRYSRKGAMSAFSCEEVIKDLRE 361
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ + + + V EE+ +YK++ +V+ + + + KL V V+KG
Sbjct: 362 KQVILGKRNKSDVAEESRFAYKDIDEVMK--NQSDLVEPVKKLHTVGVVKG 410
>gi|302806455|ref|XP_002984977.1| hypothetical protein SELMODRAFT_2909 [Selaginella moellendorffii]
gi|300147187|gb|EFJ13852.1| hypothetical protein SELMODRAFT_2909 [Selaginella moellendorffii]
Length = 356
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 163/395 (41%), Gaps = 66/395 (16%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
+ Q+ VA LPG+V +PD+H PS + + S + +G G +
Sbjct: 7 INQLEQVARLPGVV-----MPDLH--PSDHYPIGAAIESEECIYPVLIGGDVGCGMALFQ 59
Query: 95 IQIVDEIYDKWAASKM-GIEDV---GQVCVMIH------SGSRGFGHQVAT--AGNHYAE 142
+ K K+ GIE G V + S S F + T GNH+AE
Sbjct: 60 TTLSSSTRPKRICDKLQGIEGRWKDGSVSEWLAKNGISGSSSTPFDESLGTIGGGNHFAE 119
Query: 143 IQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETND 202
IQ V+ + D + S +G+ + ++ +++HSGSRG G +A VQ+ + +
Sbjct: 120 IQQVERVEDPESFSALGLHE-DKLVLLVHSGSRGLGKHIAHSQPVQLRENTAEFDAYMQQ 178
Query: 203 RQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIA 262
AC +N+ DL H I ++ D + D+ HN
Sbjct: 179 HNYACNWARTNR-------------DLIAHRIMACL-----SSDPDASASKVLDIWHNNV 220
Query: 263 KTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE 322
+E +D +++ +HRKG+ P D V+I G+ G+ SY++
Sbjct: 221 TNKE--ID--SRSVWLHRKGAA----------PSDQG----AVVIPGSRGSFSYLVMPVG 262
Query: 323 KGMQETFGSTCHGAGRALSR--AKSRRNLDYQEV---LNKLESQGISIRVASP--KLVME 375
+ +F S HGAGR+L+R A SR V L+ + RV L+ E
Sbjct: 263 DQRENSF-SLAHGAGRSLTRGVALSRMKNKASTVNAAAAALQETRLGGRVICEDVNLLFE 321
Query: 376 EAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EAPE+YK+V VV GI K RPV K
Sbjct: 322 EAPEAYKDVDVVVGELVGCGIIKVVAVYRPVVTYK 356
>gi|19572316|emb|CAD19083.1| unnamed protein product [Stigmatella aurantiaca]
Length = 385
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 32/250 (12%)
Query: 164 GQVCVMIHSGSRGFGHQVATDAL--VQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ 221
G + +++H+GSRG G +A L Q+ + T+ + A ++ A Q
Sbjct: 166 GALWLLLHTGSRGVGAAIAAHHLRVAQVSGEGSLPGLRTDTSEGAACLADTE----LACQ 221
Query: 222 FNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 281
F D + + A P LD V DV HN E H +TLLVHRK
Sbjct: 222 FARANRDTLLQRAVEVLAGAIGQGPV-LDSRV--DVHHNHVAAESHF----GRTLLVHRK 274
Query: 282 GSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALS 341
G+ + GQ LI G+MGT SY++ G KG + F S HGAGR ++
Sbjct: 275 GAV-------------GLVAGQQGLIPGSMGTASYLVAG--KGEPQAFCSCSHGAGRVMT 319
Query: 342 RAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTF 401
R ++R + + + L + ++EEAP +Y+++T+V++ +
Sbjct: 320 RREARERIRPAALAHALRR--VVFDEGRVTALVEEAPTAYRDITEVLED--EAELVTPLR 375
Query: 402 KLRPVAVIKG 411
+L P+AV+KG
Sbjct: 376 RLTPIAVLKG 385
>gi|282890195|ref|ZP_06298725.1| hypothetical protein pah_c014o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174283|ref|YP_004651093.1| protein rtcB [Parachlamydia acanthamoebae UV-7]
gi|281499852|gb|EFB42141.1| hypothetical protein pah_c014o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478641|emb|CCB85239.1| protein rtcB [Parachlamydia acanthamoebae UV-7]
Length = 454
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 49/271 (18%)
Query: 132 QVATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD----A 185
Q+ T+G NH+ E E+ + + +G++ V ++ HSGSRG G ++A A
Sbjct: 200 QIGTSGGGNHFVEW---GELEIGSSENPLGLQVGKYVALLSHSGSRGVGAKIADHYTKWA 256
Query: 186 LVQMEKAMKRDNIETNDRQLACARINSNKNKAF--AKQFNTTPDDLDMHVIYDAFAKQFN 243
+ QM +E + R LA ++S + A Q + HVI+ ++
Sbjct: 257 MEQM------PTLEQSVRHLAWLPLDSEAGLEYWDAMQLAGKFASANHHVIHQRISQALG 310
Query: 244 TTP-DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTG 302
TP ++ H HN A E ++DG +K +VHRKG+T P + G
Sbjct: 311 LTPLTSVENH------HNFAWKESVIIDGIEKEWIVHRKGAT----------PAGKDVLG 354
Query: 303 QPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQG 362
+I GTM +++ G KG S HG+GR +SR ++++N+ ++ L +G
Sbjct: 355 ---IIPGTMADVGFLVRG--KGHAAALNSASHGSGRQMSRTRAKQNITSEQHAAYLSQRG 409
Query: 363 ISIRVASPKLV---MEEAPESYKNVTDVVDT 390
+ KL+ ++EAP++YK + V++
Sbjct: 410 V-------KLIGGGLDEAPQAYKPIEQVIEA 433
>gi|160897901|ref|YP_001563483.1| release factor H-coupled RctB family protein [Delftia acidovorans
SPH-1]
gi|160363485|gb|ABX35098.1| release factor H-coupled RctB family protein [Delftia acidovorans
SPH-1]
Length = 384
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 120/284 (42%), Gaps = 60/284 (21%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q+VD +Y+ G D +V +M+HSGSRG G A+ R
Sbjct: 144 GNHFAELQVVDTLYED------GALDRKRVHLMVHSGSRGLG------------GAILRA 185
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM----- 251
++E + + A N L H AFA Q N +
Sbjct: 186 HVE------------AFSHDGLAASSNAATQYLRQHAAAIAFA-QLNRASIAARLLRALR 232
Query: 252 ---HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+ D++HN H G+ L HRKG+T P D L V+I
Sbjct: 233 TRGQALLDITHN--HVIAHHWRGEDGFL--HRKGAT----------PADQGL----VVIP 274
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL--ESQGISIR 366
G+ G SY++ G E S HGAGR +R L + L++L G ++
Sbjct: 275 GSRGDYSYLVRPV-AGRDEALHSLAHGAGRKWARTDCMGRLRPRFTLDELLRTKFGSAVV 333
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
A +LV EEAP++YK+V VV + G+ + +LRP+ K
Sbjct: 334 CADRELVYEEAPQAYKDVDSVVASLQEAGLVQLVARLRPLLTYK 377
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
T+G GNH+AE+Q+VD +Y+ G D +V +M+HSGSRG G + A
Sbjct: 140 TIGGGNHFAELQVVDTLYED------GALDRKRVHLMVHSGSRGLGGAILRA 185
>gi|416859129|ref|ZP_11913697.1| hypothetical protein PA13_17624 [Pseudomonas aeruginosa 138244]
gi|334838786|gb|EGM17493.1| hypothetical protein PA13_17624 [Pseudomonas aeruginosa 138244]
gi|453044820|gb|EME92542.1| hypothetical protein H123_19226 [Pseudomonas aeruginosa PA21_ST175]
Length = 379
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQEQVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LA A A +F L I + D L++ D
Sbjct: 194 GSLEASAYLA--------RHADALRFAEGNRQLIARRILE------RLRCDGLEL---LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ + VDG L HRKG+T P D + ++I G+ G SY
Sbjct: 237 INHNLVAPAQ--VDGVDGWL--HRKGAT----------PADQGM----LVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 279 LVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAI 178
>gi|358011181|ref|ZP_09142991.1| rtcb protein [Acinetobacter sp. P8-3-8]
Length = 425
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +++ QV +M+HSGSRG G+ + + K M++
Sbjct: 187 GNHFVEI---------------CLDEHQQVWIMLHSGSRGVGNAIGNHFIELARKDMQKH 231
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I D+ LA + + A++F +L M A K FN
Sbjct: 232 FINLPDKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNRELMMEAAVQALRIIINKPFNAKV 291
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN EEH + ++V RKG+ RA + +IP
Sbjct: 292 EAVNCH------HNYVDKEEHF----GQEVMVTRKGAVRARLGEYGIIP----------- 330
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G KG QE+F S HGAGR SR ++R ++ + ++QG+ R
Sbjct: 331 --GSMGAKSFIVKG--KGNQESFCSCSHGAGRVHSRTAAKRLFTVEDQIE--QTQGVECR 384
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + L V +KG
Sbjct: 385 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLNQVVCVKG 425
>gi|383459726|ref|YP_005373715.1| hypothetical protein COCOR_07765 [Corallococcus coralloides DSM
2259]
gi|380731728|gb|AFE07730.1| hypothetical protein COCOR_07765 [Corallococcus coralloides DSM
2259]
Length = 385
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 122/286 (42%), Gaps = 65/286 (22%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG------HQVATDALVQ-- 188
GNH+ E+ D D W ++IHSGSRG G HQ AL Q
Sbjct: 154 GNHFLELD-RDGAGDLW--------------LLIHSGSRGVGGAVGEHHQRVAQALGQGT 198
Query: 189 ---MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
++ + ND LAC +N+++ + D L
Sbjct: 199 PPALDTGTEAGRACVNDLDLACRFARANRDQLAVRALAVLADVL-------------GVA 245
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
PD D V DV HN +E H + L VHRKG+ + +D G
Sbjct: 246 PDP-DRTV--DVHHNHVASETHF----GRALWVHRKGA----------VGLDAGARG--- 285
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
LI G+MGT SYV+ G +G F S HGAGR L+R ++R + +++ L +
Sbjct: 286 LIPGSMGTASYVVEG--RGEPRAFRSCSHGAGRVLTRTEARARIRPDALVHALRR--VVF 341
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++EEAP +Y+++T+V++ + +L P+AV+KG
Sbjct: 342 DPGRTHALVEEAPAAYRDLTEVLEDEE--DLVTPRVRLTPLAVLKG 385
>gi|294650581|ref|ZP_06727938.1| RtcB family protein [Acinetobacter haemolyticus ATCC 19194]
gi|292823578|gb|EFF82424.1| RtcB family protein [Acinetobacter haemolyticus ATCC 19194]
Length = 444
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 206 GNHFVEI-CLDEHNHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 250
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K FN
Sbjct: 251 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIIPKPFNAKL 310
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ A + +IP
Sbjct: 311 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVSAKLGQYGIIP----------- 349
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SRA+++R ++ + ++++G+ R
Sbjct: 350 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRAEAKRRFTVEDQI--VQTEGVECR 403
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 404 --KDAAVIDEIPSAYKPIEDVMKAQQ--DLVEVVYTLRQVVCVKG 444
>gi|227325963|ref|ZP_03829987.1| hypothetical protein PcarcW_01026 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 373
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 48/280 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +DEIY A + I D Q+ +++HSGSRG G +
Sbjct: 130 GNHFAELQQLDEIYQPDALHALHI-DPKQLLLLVHSGSRGLGQTI--------------- 173
Query: 197 NIETNDRQLACARINSNKNKAFA----KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+E + R+ + +N A A QF T + +I ++++T D
Sbjct: 174 -LEAHVREFGHQGLEANTPAAEAYLEQHQFALTFATHNRRLIAQRMLERWHTEGD----- 227
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
DV+HN+ ++G L HRKG+T P D PV+I G+ G
Sbjct: 228 AALDVNHNLVTPA--TIEGISGWL--HRKGAT----------PADCG----PVIIPGSRG 269
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP-- 370
SY++ ++ S HGAGR R + + L + + +L RV
Sbjct: 270 DYSYIVQPIPHA--DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQDR 327
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK + V+ G+ +L+PV K
Sbjct: 328 QLIFQEAPEAYKPIDSVIGAMQQAGLITLIARLKPVLTYK 367
>gi|423224330|ref|ZP_17210798.1| hypothetical protein HMPREF1062_02984 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392636686|gb|EIY30567.1| hypothetical protein HMPREF1062_02984 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 390
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 135/284 (47%), Gaps = 52/284 (18%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q ++ G + +M+HSGSR G V D QM + +
Sbjct: 150 GNHFIELQRCND---------------GYLWIMLHSGSRNLGKMVG-DYYNQMAETLNTR 193
Query: 197 NIET--NDRQLACARINSNKNKAFAKQ------FNTTPDDLDMHVIYDAFAKQF-NTTPD 247
+ D +LA + + + K + + F L M I + A+ N T +
Sbjct: 194 WYSSVKPDIKLAFLPLRAPEFKQYWAEMEYCVAFALANRKLMMERIEEIIAEALPNATFE 253
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ +++HN A EEH + ++VHRKG+ A G+ +I
Sbjct: 254 PM-----INIAHNYAAWEEHF----GENVIVHRKGAVHA-------------GIGEIGII 291
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+ GT SY++ G G E+F S+ HGAGRA+SR+++ R+L +E + +LESQ I I
Sbjct: 292 PGSQGTHSYIVEGL--GNPESFLSSSHGAGRAMSRSEAVRSLSLEEEIARLESQNI-IHA 348
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +EEA +YKN+ +V+ + + + L P+AVIKG
Sbjct: 349 IRGRQDLEEAAGAYKNIDEVM--ANQADLVRILTTLSPIAVIKG 390
>gi|294630722|ref|ZP_06709282.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292834055|gb|EFF92404.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 397
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 169/399 (42%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G +
Sbjct: 27 LQQLQNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG--HQVATAG-----NHYAEIQIVDE 148
+ +++ + + IE V +H G H + T+G + + +
Sbjct: 86 LTANDLPGDLSRLRSKIEQAIPVGRGMHDDPLDPGRFHALPTSGWDGFWDRFDGVAEAVR 145
Query: 149 IYDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG +++ G V +M+HSGSR G ++A + +K
Sbjct: 146 FRQERAVRQMGTLGSGNHFIEVCVDEGGAVWLMLHSGSRNIGKELAEHHIGVAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ L M ++ D K+F +
Sbjct: 206 GLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRTLMMALLKDVVRKEFKKAKPAFEQE 265
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + DG LLV RKG+ RA + +IP G+MG
Sbjct: 266 I--SCHHNYVAEERY--DGMD--LLVTRKGAIRAGSGDYGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G +++F S HGAGR +SR ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNEKSFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKPIEQVIDQQR--DLVEVVAKLKQVVCVKG 397
>gi|108761222|ref|YP_628561.1| hypothetical protein MXAN_0280 [Myxococcus xanthus DK 1622]
gi|108465102|gb|ABF90287.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length = 384
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 120/262 (45%), Gaps = 56/262 (21%)
Query: 164 GQVCVMIHSGSRGFGHQVATD----ALVQMEKAMKRDNIETN-------DRQLACARINS 212
G + +++H+GSRG G +A A E + +I T D Q AC +
Sbjct: 165 GALWLLLHTGSRGVGAAIADHHGRVARALGEGGLPALDIHTAEGAACLADTQWACRFALA 224
Query: 213 NKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 272
N+ A+ + V+ +A + T + DV HN EEH
Sbjct: 225 NREAIAARALD---------VLEEALGVAADPT-------SVVDVHHNHVAQEEH----G 264
Query: 273 QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGST 332
+ L VHRKG+ V Q +GQ LI G+MGT SYV G +G F S
Sbjct: 265 GRLLWVHRKGA------------VGLQ-SGQRGLIPGSMGTASYVAEG--RGEPRAFRSC 309
Query: 333 CHGAGRALSRAKSR---RNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVD 389
HGAGR L+RA++R R + VL ++ R A+ ++EEAP +Y+++T+V++
Sbjct: 310 SHGAGRVLTRAEARARIRPAALEHVLRRVVYD--KGRAAA---LVEEAPAAYRDITEVLE 364
Query: 390 TCHAVGISKKTFKLRPVAVIKG 411
+ + +L P+AV+KG
Sbjct: 365 D--EADLVRPLLRLTPLAVLKG 384
>gi|29831296|ref|NP_825930.1| hypothetical protein SAV_4753 [Streptomyces avermitilis MA-4680]
gi|29608411|dbj|BAC72465.1| hypothetical protein SAV_4753 [Streptomyces avermitilis MA-4680]
Length = 397
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 54/379 (14%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S M+ + + +G G
Sbjct: 27 LRQLQNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMQGAVCPAAVGVDIGCGMSAVRTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSG--SRGFGHQVATAG--NHYAEIQIVDE--- 148
+ +++ + + IE+ V +H G H +ATAG + + V E
Sbjct: 86 LTANDLPGDLSRLRSKIEEAIPVGRGMHESPVEPGRFHGMATAGWDDFWGRFDGVAEAVK 145
Query: 149 IYDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
A +MG +++ G V +M+HSGSR G ++A + + + + +
Sbjct: 146 FRQGRAIKQMGTLGGGNHLIETCLDESGSVWLMLHSGSRNIGKELA-EYHIGVAQGLPH- 203
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
N DR LA ++ + A+ A+++ + M ++ D K+F D
Sbjct: 204 NQGLVDRDLAVFVSDTPQMAAYRNDLYWAQEYAKYNRAIMMALLKDVIRKEFKKAKPTFD 263
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
+ HN E + + LLV RKG+ RA + +IP G+
Sbjct: 264 QEI--SCHHNYVSEERY----EGMDLLVTRKGAIRAGSGEYGIIP-------------GS 304
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SY++ G +G ++ F S HGAGR +SR ++R ++ LE Q +
Sbjct: 305 MGTSSYIVKG--RGNEKAFNSASHGAGRRMSRNAAKRRFTVRD----LEEQTRGVECRKD 358
Query: 371 KLVMEEAPESYKNVTDVVD 389
V++E P +YKN+ V++
Sbjct: 359 SGVLDEIPAAYKNIDQVME 377
>gi|381150699|ref|ZP_09862568.1| hypothetical protein Metal_0713 [Methylomicrobium album BG8]
gi|380882671|gb|EIC28548.1| hypothetical protein Metal_0713 [Methylomicrobium album BG8]
Length = 406
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 70/292 (23%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE + W M+HSGSRG G+++ + K M++
Sbjct: 168 GNHFIEV-CLDESQNVW--------------FMLHSGSRGVGNRIGMHFIELARKDMEKF 212
Query: 197 NIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAF----AKQFNTTP 246
I+ DR LA + + ++A+ F +L MH + A K F T
Sbjct: 213 YIQLPDRDLAYFPEGTEHFDDYVQAVSWAQDFARRNRELMMHNLVAAVQAICPKPFTTDV 272
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + E H +LV RKG+ A+P GQ +
Sbjct: 273 EAVNCH------HNYVQREHHF----GHNVLVTRKGAVAAWP-------------GQMGI 309
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
I G+MG S+++ G KG E+F S HGAGRA+SR ++++ + + E G+ R
Sbjct: 310 IPGSMGAKSFIVRG--KGQAESFCSCSHGAGRAMSRTEAKKRFSIADQIAATE--GVECR 365
Query: 367 VASPKLVMEEAPESYKNV-------TDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V++E P +YK++ TD+V+ H L+ V +KG
Sbjct: 366 KDAD--VIDEIPMAYKDIDAVMAAQTDLVEIVHT---------LKQVVCVKG 406
>gi|224540464|ref|ZP_03681003.1| hypothetical protein BACCELL_05377 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517906|gb|EEF87011.1| hypothetical protein BACCELL_05377 [Bacteroides cellulosilyticus
DSM 14838]
Length = 390
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 135/284 (47%), Gaps = 52/284 (18%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q ++ G + +M+HSGSR G V D QM + +
Sbjct: 150 GNHFIELQRCND---------------GYLWIMLHSGSRNLGKMVG-DYYNQMAETLNTR 193
Query: 197 NIET--NDRQLACARINSNKNKAFAKQ------FNTTPDDLDMHVIYDAFAKQF-NTTPD 247
+ D +LA + + + K + + F L M I + A+ N T +
Sbjct: 194 WYSSVKPDIKLAFLPLRAPEFKQYWAEMEYCVAFALANRKLMMERIEEIIAEALPNATFE 253
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ +++HN A EEH + ++VHRKG+ A G+ +I
Sbjct: 254 PM-----INIAHNYAAWEEHF----GENVIVHRKGAVHA-------------GIGEIGII 291
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+ GT SY++ G G E+F S+ HGAGRA+SR+++ R+L +E + +LESQ I I
Sbjct: 292 PGSQGTHSYIVEGL--GNPESFLSSSHGAGRAMSRSEAVRSLSLEEEIARLESQNI-IHA 348
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ +EEA +YKN+ +V+ + + + L P+AVIKG
Sbjct: 349 IRGRQDLEEAAGAYKNIDEVM--ANQADLVRILTTLSPIAVIKG 390
>gi|219848217|ref|YP_002462650.1| hypothetical protein Cagg_1306 [Chloroflexus aggregans DSM 9485]
gi|219542476|gb|ACL24214.1| protein of unknown function UPF0027 [Chloroflexus aggregans DSM
9485]
Length = 439
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 50/284 (17%)
Query: 132 QVATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQ--VCVMIHSGSRGFGHQVAT--DA 185
Q+ T+G NH+AEI I +W + GQ V ++ HSGSRG G ++A
Sbjct: 191 QIGTSGGGNHFAEIVI-----GEWLTN-------GQPFVGLLTHSGSRGVGARIANYYAE 238
Query: 186 LVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
L E A+ I L+ R + + A + + VI+ FA+
Sbjct: 239 LADRETAVIAKGIPRTYGWLSTER-EAGQEYLLAMRLAGDFARANHEVIHARFARALG-- 295
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
L + + + HN A + DG ++HRKG+T P + + G
Sbjct: 296 ---LKVTQVIENHHNFAWEQP---DGT----VIHRKGAT----------PAEAGVLG--- 332
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
+I G+M T SY++ G G + T S HGAGR SRA++RR + + G+ +
Sbjct: 333 IIPGSMATASYIVEGL--GDKATLASAAHGAGRRFSRAEARRTITPAMAAAVVREAGVLV 390
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409
R L ++E+P +YK++ V++ A G+ + ++RP+ V+
Sbjct: 391 R----GLTVDESPLAYKDIESVMEVQIAAGLIRPVARMRPLVVV 430
>gi|183600290|ref|ZP_02961783.1| hypothetical protein PROSTU_03849 [Providencia stuartii ATCC 25827]
gi|188020080|gb|EDU58120.1| release factor H-coupled RctB family protein [Providencia stuartii
ATCC 25827]
Length = 378
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE QI+D+I++ + ++ G+ + +++HSGSRG G +++ R
Sbjct: 135 GNHFAEFQIIDKIFNDESIAQSGLNKKCAL-LLVHSGSRGLG------------QSILRQ 181
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
++E + N K A Q + +L+ +I +Q + + D
Sbjct: 182 HVENHSHNGLEEHSNDAKAYLEAHQHALSFAELNRQLIGLRMLQQVKAKGE-----MALD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ E ++G Q L HRKG+T P D + V+I G+ G SY
Sbjct: 237 VNHNL--VEPCTINGIQGWL--HRKGAT----------PSDKGM----VIIPGSRGDFSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ + + S HGAGR R + + L ++ +L + RV A+ +L+
Sbjct: 279 LVL--PHASEVSLNSLAHGAGRKWMRTECKGRLSHRYTPLQLSRTALGSRVICANKQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP+SYK++ V+++ G+ + +L P+ K
Sbjct: 337 EEAPQSYKSIETVIESMVGAGLIEVIARLHPLLTYK 372
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 56 LPDVHSVPSTQWLSDNT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGI 112
+PD S P +WL ++ M+S + + S ++G GNH+AE QI+D+I++ + ++ G+
Sbjct: 103 MPD--SAP-LEWLDEHVPHEMKSHH-FMSSLGSIGGGNHFAEFQIIDKIFNDESIAQSGL 158
Query: 113 EDVGQVCVMIHSGSRGFGHQV 133
+ +++HSGSRG G +
Sbjct: 159 NKKCAL-LLVHSGSRGLGQSI 178
>gi|444916850|ref|ZP_21236959.1| hypothetical protein D187_09525 [Cystobacter fuscus DSM 2262]
gi|444711749|gb|ELW52687.1| hypothetical protein D187_09525 [Cystobacter fuscus DSM 2262]
Length = 387
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 67/287 (23%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD----ALVQMEKA 192
GNH+ E+ D D W +++H+GSRG G +A A Q E +
Sbjct: 156 GNHFLELD-RDAGGDLW--------------LLLHTGSRGVGAAIAAHHVRVAQAQGEGS 200
Query: 193 MKRDNIET-------NDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + +T D LAC +N++ ++ D L + D+
Sbjct: 201 LPGLSTDTPEGAACLADTGLACHFARANRDMLLSRAGAVLADMLGREPLPDSR------- 253
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
DV HN E+H + LLVHRKG+ P GQ
Sbjct: 254 ---------VDVHHNHVAAEQHF----GRVLLVHRKGAIGLAP-------------GQTG 287
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
LI G+MGT SY++TG +G +FGS HGAGR ++R ++R ++ + + L +
Sbjct: 288 LIPGSMGTASYLVTG--RGEPRSFGSCSHGAGRVMTRKEARAHIRPDALEHALRRVVFDM 345
Query: 366 -RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
R AS ++EEAP Y+++T+V++ + +L P+AV+KG
Sbjct: 346 GRAAS---LVEEAPAVYRDITEVLEDEEEL--VTPWLRLTPIAVLKG 387
>gi|392987196|ref|YP_006485783.1| hypothetical protein PADK2_29100 [Pseudomonas aeruginosa DK2]
gi|419757326|ref|ZP_14283670.1| hypothetical protein CF510_30502 [Pseudomonas aeruginosa
PADK2_CF510]
gi|384396367|gb|EIE42786.1| hypothetical protein CF510_30502 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392322701|gb|AFM68081.1| hypothetical protein PADK2_29100 [Pseudomonas aeruginosa DK2]
Length = 379
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQEQVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LA A A +F L I + D L++ D
Sbjct: 194 GSLEASAYLA--------RHADALRFAEGNRQLIARRILERL------RCDGLEL---LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ + VDG L HRKG+T P D + ++I G+ G SY
Sbjct: 237 INHNLVAPAQ--VDGVDGWL--HRKGAT----------PADQGV----LVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 279 LVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAI 178
>gi|107104574|ref|ZP_01368492.1| hypothetical protein PaerPA_01005653 [Pseudomonas aeruginosa PACS2]
gi|218894573|ref|YP_002443443.1| hypothetical protein PLES_58661 [Pseudomonas aeruginosa LESB58]
gi|254243023|ref|ZP_04936345.1| hypothetical protein PA2G_03811 [Pseudomonas aeruginosa 2192]
gi|386061649|ref|YP_005978171.1| hypothetical protein PAM18_5592 [Pseudomonas aeruginosa M18]
gi|420142639|ref|ZP_14650230.1| hypothetical protein PACIG1_5750 [Pseudomonas aeruginosa CIG1]
gi|421183599|ref|ZP_15641048.1| hypothetical protein PAE2_5542 [Pseudomonas aeruginosa E2]
gi|424943722|ref|ZP_18359485.1| hypothetical protein NCGM1179_4913 [Pseudomonas aeruginosa
NCMG1179]
gi|126196401|gb|EAZ60464.1| hypothetical protein PA2G_03811 [Pseudomonas aeruginosa 2192]
gi|218774802|emb|CAW30620.1| hypothetical protein PLES_58661 [Pseudomonas aeruginosa LESB58]
gi|346060168|dbj|GAA20051.1| hypothetical protein NCGM1179_4913 [Pseudomonas aeruginosa
NCMG1179]
gi|347307955|gb|AEO78069.1| hypothetical protein PAM18_5592 [Pseudomonas aeruginosa M18]
gi|403244607|gb|EJY58472.1| hypothetical protein PACIG1_5750 [Pseudomonas aeruginosa CIG1]
gi|404539693|gb|EKA49140.1| hypothetical protein PAE2_5542 [Pseudomonas aeruginosa E2]
Length = 379
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQEQVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LA A A +F L I + D L++ D
Sbjct: 194 GSLEASAYLA--------RHADALRFAEGNRQLIARRILE------RLRCDGLEL---LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ + VDG L HRKG+T P D + ++I G+ G SY
Sbjct: 237 INHNLVAPAQ--VDGVDGWL--HRKGAT----------PADQGV----LVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 279 LVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAI 178
>gi|421153172|ref|ZP_15612733.1| hypothetical protein PABE171_2083 [Pseudomonas aeruginosa ATCC
14886]
gi|404524158|gb|EKA34511.1| hypothetical protein PABE171_2083 [Pseudomonas aeruginosa ATCC
14886]
Length = 379
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQEQVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LA A A +F L I + D L++ D
Sbjct: 194 GSLDASAYLA--------RHADALRFAEGNRQLIARRILERL------RCDGLEL---LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ + VDG L HRKG+T P D + ++I G+ G SY
Sbjct: 237 INHNLVAPAQ--VDGVDGWL--HRKGAT----------PADQGV----LVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 279 LVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAI 178
>gi|383818167|ref|ZP_09973465.1| hypothetical protein MPHLEI_02753 [Mycobacterium phlei RIVM601174]
gi|383339412|gb|EID17748.1| hypothetical protein MPHLEI_02753 [Mycobacterium phlei RIVM601174]
Length = 394
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 32/261 (12%)
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNK-- 214
++ ++D GQV + +HSGSRG G+++AT + ++ +RD +E +R LA + +
Sbjct: 159 ELCVDDDGQVWMFLHSGSRGVGNKIATHHIEVAKRLCRRDGVELPNRDLAYLTEGTAEFD 218
Query: 215 ----NKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ + +QF + M A A+ PD ++ I + HN TE H
Sbjct: 219 RYIADLGWTQQFALANREEMMDRFRQALARWMRADPDGVETERI-NTHHNYTATERH--- 274
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
+ V RKG+ A +IP G+MGT SY++ G KG ++
Sbjct: 275 -GGTDVWVTRKGAVAAHAGRLGVIP-------------GSMGTRSYIVRG--KGNPDSLC 318
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
S HGAGR SR+++RR ++ +++ GI R + ++E P++YK + V+
Sbjct: 319 SAPHGAGRRYSRSEARRRFTAADLKSRM--AGIEYR--HGEAWVDEIPDAYKPIDTVM-- 372
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
+ + + LR V +KG
Sbjct: 373 ADSRDLVEVVTSLRQVLNVKG 393
>gi|406998364|gb|EKE16298.1| hypothetical protein ACD_11C00020G0003 [uncultured bacterium]
Length = 499
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 78/377 (20%)
Query: 70 DNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 129
+NT + N++K P T V +I D + + H G
Sbjct: 162 ENTFSNGNLFKNDPAT------------VRDILDAVPS------------LFFHIGKYRL 197
Query: 130 GHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH---------- 179
G + AGNH+ ++ + EI DK A K GI++ GQ ++H+GS G
Sbjct: 198 G-ILGAAGNHFLDLMKITEIRDKDIAEKFGIKE-GQYIFLLHTGSGLLGQYASYMYTPKK 255
Query: 180 --QVATDALVQM-------------EKAMKRDNIETNDRQLACARINSNKNKAF------ 218
++ ++++ K K+ N + + NS + K F
Sbjct: 256 KEHLSQQIILKLGTFFFNSQKKKIYSKIAKQIEEYKNKEEFIGYKDNSLEGKMFFTAHRA 315
Query: 219 AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 278
A F + H + +A K + + LD+ +YD +H + E H + + +
Sbjct: 316 AANFGFANRTVLTHHLDNAIEKVLGKSAE-LDL--LYDNTHISIEKERHF----NEDIWI 368
Query: 279 HRKGSTRAFPPH----HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH 334
HR G+ RA P HPL + TG+PV I +M T +Y+ G +K + TF S H
Sbjct: 369 HRNGAVRANGPSRMNGHPL----FSKTGEPVFIPSSMSTPAYLAVGIDKN-ETTFFSAGH 423
Query: 335 GAGRALSRAKSRRNLDY--QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCH 392
G GR R ++ N+ + +E++ K+ + + A K V+++ YK++ +V+
Sbjct: 424 GTGR---RKEANTNIPHNKEELMEKIAKNNVKLYNAKSKGVIQQDSAYYKDIEEVISGME 480
Query: 393 AVGISKKTFKLRPVAVI 409
+ K++PVAV+
Sbjct: 481 ENKVVNIVAKMQPVAVL 497
>gi|255656134|ref|ZP_05401543.1| hypothetical protein CdifQCD-2_10654 [Clostridium difficile
QCD-23m63]
gi|296450434|ref|ZP_06892190.1| release factor H-coupled RctB family protein [Clostridium difficile
NAP08]
gi|296879443|ref|ZP_06903437.1| release factor H-coupled RctB family protein [Clostridium difficile
NAP07]
gi|296260695|gb|EFH07534.1| release factor H-coupled RctB family protein [Clostridium difficile
NAP08]
gi|296429589|gb|EFH15442.1| release factor H-coupled RctB family protein [Clostridium difficile
NAP07]
Length = 355
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 172/395 (43%), Gaps = 80/395 (20%)
Query: 38 KQIANVAALPGIVGRSVGLPDVHS--VPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
KQ+ +++ L GI+ R VGLPD+H+ +P + + +I +G G +
Sbjct: 20 KQLEDISKLNGIL-RVVGLPDLHAGKIPVGLAVETKNIIYPHIIGND---IGCGMTLFKT 75
Query: 96 QIVDEIYDKWAA--SKMGIEDVGQV---------CVMIHSGSRGFGHQVATAGNHYAEIQ 144
I+ + + K S I+D+ + C +++ G+ G +GNH+ EIQ
Sbjct: 76 GILKKKFKKDKWIKSLSKIKDLSDIEIKNTYKEECPILNLGTIG-------SGNHFVEIQ 128
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV-----ATDAL-VQMEKAMKRDNI 198
+ EIY+K ++ + +++H GSR +G + A D L V+ EKA+ D I
Sbjct: 129 CISEIYNKEQFEQLKFSS-DDIMMLVHCGSRNYGEDILKKFYAKDGLEVESEKAI--DYI 185
Query: 199 ETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
+ +D L A N +A +K K + D+ I+ ++
Sbjct: 186 KNHDNALMWAERN---REAISK-------------------KIMQSIGTSGDVETIFSIN 223
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HN + K++ +HRKG+ + V+I G+ G+ SY++
Sbjct: 224 HNFIE--------KREDKFIHRKGAVSS--------------ERGAVIIPGSRGSLSYIV 261
Query: 319 TGTEKGMQETFGSTCHGAGRALSRA--KSRRNLDYQEVLNKLESQGISIRVASPKLVMEE 376
TE + + S HGAGR SR+ KSR Y + K I + L+ +E
Sbjct: 262 MPTE-NTKISLYSLSHGAGRKWSRSVCKSRLKSKYNKDTIKQTKFKSQIICSDLNLLFQE 320
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
APE+YKN+ ++++ + + ++P+ KG
Sbjct: 321 APEAYKNIEQIIESLMEHKLIQVVATMKPLITYKG 355
>gi|262372437|ref|ZP_06065716.1| rtcb protein [Acinetobacter junii SH205]
gi|262312462|gb|EEY93547.1| rtcb protein [Acinetobacter junii SH205]
Length = 422
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K FN
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIIPKPFNAKL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ A + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVSAKLGQYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SRA+++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRAEAKRRFTVEDQIT--QTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV++ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMNA--QKDLVEVVYTLRQVVCVKG 422
>gi|452994383|emb|CCQ94045.1| conserved hypothetical protein [Clostridium ultunense Esp]
Length = 380
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 31/252 (12%)
Query: 164 GQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFN 223
G + +M+HSGSR FG+++A + K + + + LA I+S + + + N
Sbjct: 156 GHIWLMVHSGSRNFGYKIANYYNKIANEINKATKLSPSKQDLAGLYIDSKEGQEYFVAMN 215
Query: 224 TTPDDLDMHVIYDAFAKQFNTT-PDDLDMHVIYD---VSHNIAKTEEHMVDGKQKTLLVH 279
+ + + +QF T ++ D H I + HN A E H ++ ++VH
Sbjct: 216 YALEFAKEN--REQLLEQFYTIFREETDSHKILQKIGIHHNYAAIETHF----REEVIVH 269
Query: 280 RKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRA 339
RKG+ RA +G+ +I G+MGT SY++ G G +E+F + HGAGR
Sbjct: 270 RKGAIRA-------------ESGELGIIPGSMGTPSYIVEGL--GNEESFRTCSHGAGRV 314
Query: 340 LSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKK 399
+SR K L +E+ +K +GI + L EAP +YK++ +V+ + + K
Sbjct: 315 MSR-KMANKLITREMADK-AMEGIVHKGWRGDL--SEAPMAYKDIEEVI--ANQKDLVKP 368
Query: 400 TFKLRPVAVIKG 411
KL P+ V+KG
Sbjct: 369 VVKLTPLGVVKG 380
>gi|268592902|ref|ZP_06127123.1| release factor H-coupled RctB family protein [Providencia rettgeri
DSM 1131]
gi|291311692|gb|EFE52145.1| release factor H-coupled RctB family protein [Providencia rettgeri
DSM 1131]
Length = 377
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 40/277 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+AE Q +DEI + + G+ + Q+ +++HSGSRG G + L Q +
Sbjct: 134 GGNHFAEFQAIDEILNPEWFKESGL-NKQQLLLLVHSGSRGLGQSI----LRQHVEKYSH 188
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIY 255
D + ++ Q A + +++N Q N L M + K ++
Sbjct: 189 DGL-IDNTQDAKDYLEAHQNALDFAQLNRQMIGLRMLQQVKSKGK------------LVL 235
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
D++HN+ E ++G + +HRKG+T P D L V+I G+ G S
Sbjct: 236 DLNHNLV--ESCKINGIEG--WIHRKGAT----------PSDRGL----VVIPGSRGDYS 277
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLV 373
Y+++ + + S HGAGR RA+ + L ++ +L + RV A+ +L+
Sbjct: 278 YLVS--PQPSEVCLNSLAHGAGRKWMRAECKGRLSHKYTPTQLSRTVLGSRVICANKQLI 335
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EE P+SYK++ V+++ +GI + +L+PV K
Sbjct: 336 YEETPQSYKSIDTVIESMVNIGIIQVVARLKPVITYK 372
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 67 WLSD---NTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIH 123
WL + N M+S + + S ++G GNH+AE Q +DEI + + G+ + Q+ +++H
Sbjct: 111 WLEEHVPNNMQSHD-FMSSLSSIGGGNHFAEFQAIDEILNPEWFKESGL-NKQQLLLLVH 168
Query: 124 SGSRGFGHQV 133
SGSRG G +
Sbjct: 169 SGSRGLGQSI 178
>gi|297201503|ref|ZP_06918900.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197716785|gb|EDY60819.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 397
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 168/399 (42%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S M+ + + +G G +
Sbjct: 27 LQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMQGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSG--SRGFGHQVATAG-----NHYAEIQIVDE 148
+ +++ + + IE V +H G H +ATAG + + +
Sbjct: 86 LTANDLPGDLSRLRSKIEQAIPVGRGMHDSPVEPGRFHGLATAGWDDFWGRFEGVADAVK 145
Query: 149 IYDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG + G V +M+HSGSR G ++A + +K
Sbjct: 146 FRHERAGKQMGTLGSGNHFVEVCTDTTGSVWLMLHSGSRNIGKELAEHHIGVAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ + M ++ D K+F +
Sbjct: 206 GLVDRDLAVFIAQTPQMAAYRNDLFWAQEYAKYNRTIMMALLKDVVRKEFKKAKPTFEQE 265
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + DG LLV RKG+ RA + +IP G+MG
Sbjct: 266 I--SAHHNYVAEERY--DGMD--LLVTRKGAIRAGSGEYGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G ++ F S HGAGR +SR ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNEKAFNSASHGAGRRMSRNAAKRRFSTRD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK++ V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKSIDQVIDQQR--DLVEVVAKLKQVVCVKG 397
>gi|424742471|ref|ZP_18170793.1| protein RtcB [Acinetobacter baumannii WC-141]
gi|422944087|gb|EKU39092.1| protein RtcB [Acinetobacter baumannii WC-141]
Length = 401
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE D W VM+HSGSRG G+ + T + +K +
Sbjct: 164 GNHFIEL-CIDENQDVW--------------VMLHSGSRGLGNVIGTYFIELAKKEAQHR 208
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNTTPD 247
D+ L+ SN + A+++ M +I +A F T +
Sbjct: 209 FGHVPDKDLSYFAEGSNSFDDYVEAVEWAQEYAFENRKEMMRLILEAIRPLLPSFQMTKE 268
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H ++LL+ RKG+ RA +IP
Sbjct: 269 AINCH------HNYVSRETHF----GESLLITRKGAIRAGLDELGIIP------------ 306
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG SY++ G K E+F S HGAGR +SR+K++ + Q+++ ++QGI R
Sbjct: 307 -GSMGARSYIVRG--KANPESFCSCSHGAGRKMSRSKAKTLFNQQDLIA--QTQGIECRK 361
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V++E P +YK++ DV+ + + + L+ V IKG
Sbjct: 362 DSG--VVDEIPSAYKDIDDVM--ANQADLIEVVHTLKQVLCIKG 401
>gi|338531111|ref|YP_004664445.1| hypothetical protein LILAB_07260 [Myxococcus fulvus HW-1]
gi|337257207|gb|AEI63367.1| hypothetical protein LILAB_07260 [Myxococcus fulvus HW-1]
Length = 386
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 52/260 (20%)
Query: 164 GQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIE------------TNDRQLACARIN 211
G + +++H+GSRG G +A D V++ +A+ ++ D + AC
Sbjct: 167 GALWLLLHTGSRGVGAAIA-DHHVRVARALGEGSLPGLSTRTPEGAACVADTRWACRFAL 225
Query: 212 SNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+N+ A+ + + L V DA ++ DV HN EEH
Sbjct: 226 ANREAIAARALDVLEEALG--VAADAASR--------------VDVHHNHVAQEEH---- 265
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
+ L VHRKG+ V + GQ LI G+MGT SYV+ G +G F S
Sbjct: 266 GGRLLWVHRKGA------------VGLE-AGQRGLIPGSMGTASYVVEG--RGEPRAFRS 310
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
HGAGR L+R+++R + L L + + R + LV EEAP +Y+++T+V++
Sbjct: 311 CSHGAGRVLTRSEARARI-RPAALEHLLRRVVYARERAATLV-EEAPAAYRDITEVLED- 367
Query: 392 HAVGISKKTFKLRPVAVIKG 411
+ + +L P+AV+KG
Sbjct: 368 -EADLVRPLTRLTPLAVLKG 386
>gi|451983758|ref|ZP_21932034.1| Protein with similarity to RtcB [Pseudomonas aeruginosa 18A]
gi|451758704|emb|CCQ84557.1| Protein with similarity to RtcB [Pseudomonas aeruginosa 18A]
Length = 379
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 42/277 (15%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQEQVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LA A A +F L I + D L++ D
Sbjct: 194 GSLEASAYLA--------RHADALRFAEGNRQLIARRILERL------RCDGLEL---LD 236
Query: 257 VSHN-IAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
++HN +A + VDG +HRKG+T P D + ++I G+ G S
Sbjct: 237 INHNLVAPVQVDGVDG-----WLHRKGAT----------PADQGV----LVIPGSRGDYS 277
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLV 373
Y++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 278 YLVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLI 335
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 336 YEEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAI 178
>gi|226357200|ref|YP_002786940.1| hypothetical protein Deide_21600 [Deinococcus deserti VCD115]
gi|226319190|gb|ACO47186.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 467
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 39/261 (14%)
Query: 132 QVATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T+G NH+ E + K + +G+E + V+ HSGSRGFG QVA
Sbjct: 215 QIGTSGSGNHFVEFGTL-----KLREADLGMEPGEYLAVLSHSGSRGFGAQVAGHFTALA 269
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMH-VIYDAFAKQFNTTPD 247
+K N++ ++LA +++++ +A+ + N L H +I+ A N P
Sbjct: 270 QKL--HPNLDRAAQKLAWLPMDTHEGEAYWQAMNLAGRYALANHDLIHRRLAHALNVRPT 327
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
SHN+A + H + + L+VHRKG+T A LIP
Sbjct: 328 -----AQVSNSHNLAWKQIH----QGRELIVHRKGATPAERGRLGLIP------------ 366
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+M +V+ G +G + S HGAGR L R + L ++V L +GI++
Sbjct: 367 -GSMADPGFVVRG--RGEEAALNSASHGAGRQLGRKAAANTLAKKDVQGYLRERGITLIG 423
Query: 368 ASPKLVMEEAPESYKNVTDVV 388
++EAP++YK + DV+
Sbjct: 424 GG----IDEAPQAYKRIEDVI 440
>gi|445419001|ref|ZP_21435043.1| protein RtcB [Acinetobacter sp. WC-743]
gi|444760286|gb|ELW84739.1| protein RtcB [Acinetobacter sp. WC-743]
Length = 419
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +++ QV +M+HSGSRG G+ + + K M++
Sbjct: 181 GNHFVEI---------------CLDEHQQVWIMLHSGSRGVGNAIGNHFIELARKDMQKH 225
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I D+ LA + + A++F +L M A K FN
Sbjct: 226 FINLPDKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNRELMMEAAVQALRIIINKPFNAKV 285
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN EEH + +LV RKG+ RA + +IP
Sbjct: 286 EAVNCH------HNYVDKEEHF----GQEVLVTRKGAVRARLGEYGIIP----------- 324
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G KG QE+F S HGAGR SR +++ ++ + ++QG+ R
Sbjct: 325 --GSMGAKSFIVKG--KGNQESFCSCSHGAGRVHSRTAAKKLFTVEDQIE--QTQGVECR 378
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + L V +KG
Sbjct: 379 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLSQVVCVKG 419
>gi|386816895|ref|ZP_10104113.1| protein of unknown function UPF0027 [Thiothrix nivea DSM 5205]
gi|386421471|gb|EIJ35306.1| protein of unknown function UPF0027 [Thiothrix nivea DSM 5205]
Length = 400
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 59/304 (19%)
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
M+ + R +G Q+ T +GNH+ E+ +DE D W VM+HSGSRG G
Sbjct: 143 MVKNFHRTWGKQLGTLGSGNHFIEL-CIDESDDVW--------------VMLHSGSRGIG 187
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMH 232
+ + + + +K + R+ + D+ LA + + +A+ + T M
Sbjct: 188 NAIGRYFIEKAKKDVGRELGQLPDKDLAYFTEGTQHFDDYVQAVGWAQDYAMTNRREMMR 247
Query: 233 VIYDAFAK-----QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAF 287
++ DA F TT + ++ H HN + E H + V RKG+ A
Sbjct: 248 LVLDALQTCQHLPTFTTTREAINCH------HNYVQQETHF----GAEVYVTRKGAISA- 296
Query: 288 PPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRR 347
GQ +I G+MG SY++ G G +++F S HGAGR +SR +++R
Sbjct: 297 ------------QQGQLGIIPGSMGAKSYIVRGL--GNEQSFCSCSHGAGRRMSRTEAKR 342
Query: 348 NLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVA 407
+ ++ LE+Q I K V++E P +YK++ DVV A + + L+ V
Sbjct: 343 RFNTRD----LEAQTAGIECRKDKGVVDEIPGAYKDI-DVVMQNQA-DLVEVVHTLKQVV 396
Query: 408 VIKG 411
+KG
Sbjct: 397 CVKG 400
>gi|421898440|ref|ZP_16328806.1| rtcb-like protein [Ralstonia solanacearum MolK2]
gi|206589646|emb|CAQ36607.1| rtcb-like protein [Ralstonia solanacearum MolK2]
Length = 379
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 169/387 (43%), Gaps = 54/387 (13%)
Query: 37 VKQIANVAALPGIVGRSV-GLPDVH---SVP-STQWLSDNTMRSSNIWKR--SPLTLGAG 89
++Q+ A LPG+ R V G+PD+H P + S + + I + L A
Sbjct: 27 IQQLQTTATLPGM--RHVAGMPDLHPGRGYPVGASFFSVGCLYPALIGNDIGCGMALWAT 84
Query: 90 NHYAEIQIVDEIYDKWAASKMGIEDV--GQVCVMIHSGSRGFGHQVAT--AGNHYAEIQI 145
+ A +D++ + + ++D Q + +G+ GF + T GNH+AE+Q
Sbjct: 85 DLDANKANLDKLEKRLGNLDVPLDDTWREQAAALAPAGT-GFDAALGTIGGGNHFAELQR 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQL 205
VD ++D AA +G+ + Q+ +++HSGSRG G + + L + D + +
Sbjct: 144 VDTVHDAAAADALGL-NARQLLLLVHSGSRGLGQAILDEQL----RTHGHDGLPQDSP-- 196
Query: 206 ACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 265
ACA + + A +F +L + D Q + DV HN+
Sbjct: 197 ACAAYLARHDTAL--RFAKANRELIARRMLDRLHAQGKP---------LLDVHHNLVTPA 245
Query: 266 EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM 325
+V G++ L HRKG+T P D PV+I G+ G SY++ +
Sbjct: 246 --VVKGERGWL--HRKGAT----------PSD----AGPVVIPGSRGDFSYLV--APQPS 285
Query: 326 QETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ--GISIRVASPKLVMEEAPESYKN 383
+ S HGAGR R++ + L + +L G + +L+ EEAPE+YK
Sbjct: 286 EHGLFSLAHGAGRKWMRSECKDRLSRRFSPAQLNRTRLGSHVICEDKQLIYEEAPEAYKP 345
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ V+ G+ K +LRPV K
Sbjct: 346 IESVIAPLEQAGLLKVIARLRPVLTYK 372
>gi|418466450|ref|ZP_13037371.1| hypothetical protein SMCF_224 [Streptomyces coelicoflavus ZG0656]
gi|371552972|gb|EHN80199.1| hypothetical protein SMCF_224 [Streptomyces coelicoflavus ZG0656]
Length = 397
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 167/399 (41%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G +
Sbjct: 27 LQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSG--SRGFGHQVATAG--NHYAEIQIVDE--- 148
+ +++ + + IE+ V +H G H +ATAG + + V E
Sbjct: 86 LTANDLPGDLSRLRSKIEEAIPVGRGMHDSPVEPGRFHGLATAGWDDFWGRFDGVAEAVK 145
Query: 149 IYDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG + G V +M+HSGSR G ++A + +K
Sbjct: 146 FRHERAGKQMGTLGGGNHFVELCTDTTGSVWLMLHSGSRNIGKELAEHHIGVAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ L M + D K+F +
Sbjct: 206 GLIDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRTLMMALFKDVVRKEFKKAKPVFEPE 265
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + + LLV RKG+ RA + +IP G+MG
Sbjct: 266 I--SAHHNYVAEERY----EGMDLLVTRKGAIRAGSGEYGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G ++F S HGAGR +SR ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNAKSFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKPIEQVIDQQR--DLVEVVAKLKQVVCVKG 397
>gi|403054124|ref|ZP_10908608.1| rtcb protein [Acinetobacter bereziniae LMG 1003]
Length = 419
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +++ QV +M+HSGSRG G+ + + K M++
Sbjct: 181 GNHFVEI---------------CLDEHQQVWIMLHSGSRGVGNAIGNHFIELARKDMQKH 225
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I D+ LA + + A++F +L M A K FN
Sbjct: 226 FINLPDKDLAYLVEGTGHFDDYWFAVGWAQRFAMKNRELMMEAAVQALRIIINKPFNAKV 285
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN EEH + +LV RKG+ RA + +IP
Sbjct: 286 EAVNCH------HNYVDKEEHF----GQEVLVTRKGAVRARLGEYGIIP----------- 324
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G KG QE+F S HGAGR SR +++ ++ + ++QG+ R
Sbjct: 325 --GSMGAKSFIVKG--KGNQESFCSCSHGAGRVHSRTAAKKLFTVEDQIE--QTQGVECR 378
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + L V +KG
Sbjct: 379 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLSQVVCVKG 419
>gi|115377163|ref|ZP_01464376.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|310819288|ref|YP_003951646.1| hypothetical protein STAUR_2015 [Stigmatella aurantiaca DW4/3-1]
gi|115365806|gb|EAU64828.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|309392360|gb|ADO69819.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 474
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 125/294 (42%), Gaps = 45/294 (15%)
Query: 127 RGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV----- 181
R G GNH+ E+Q V+ I D+ A + G+ + GQ+ MIHSGSR G V
Sbjct: 215 RDAGLATIGGGNHFVEVQRVESIRDRTRAWEWGVRE-GQLAFMIHSGSRDMGKHVGGAWQ 273
Query: 182 --ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKA-FAKQFNTTPDDLDMHVIYDAF 238
A A + + ++ L + + A +A +L H + + F
Sbjct: 274 DRARAAWPAGKPFPDSGILPLSEPALVAEYLRAEATAANYAFLNRLLLAELLRHTLRELF 333
Query: 239 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298
D++ +IYDV HNI E + RKG+ P +
Sbjct: 334 G--------DVEAPLIYDVPHNITLPWEGG--------WLARKGAC----------PAEA 367
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSR-AKSRRNLDYQ-EVLN 356
QPV+I G+MG SY++ G G S HGAGRA SR + +R D + E L
Sbjct: 368 D---QPVIIPGSMGAPSYLMVGC--GETRALASASHGAGRARSRFSMARGGADRRDEALG 422
Query: 357 KLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
I++R + +EEAP +YK + VV + GI ++ +L P+ K
Sbjct: 423 LTGVDCITLRA---ERRIEEAPAAYKPIGPVVASQVEAGIVREVARLSPLLTFK 473
>gi|268609190|ref|ZP_06142917.1| hypothetical protein RflaF_06802 [Ruminococcus flavefaciens FD-1]
Length = 411
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 133/327 (40%), Gaps = 76/327 (23%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ E+Q +D G +M+HSGSR FG+ V N +
Sbjct: 161 TLGGGNHFIELQQ---------------DDNGMCGIMLHSGSRHFGNIVGQYFN-----K 200
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
I E+ DKW + ++ + V G R L M+ M + +R
Sbjct: 201 IAHELNDKWFSQVPAEWNLPFLPVDTDEGKR---------YLEWMQLCM---DFAYENRA 248
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
+ ++ K + TP D+++ H HN A
Sbjct: 249 IMLQKVKELFTKHVKRHTGITP-----------------VFTDEINCH------HNYAAL 285
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E H K + VHRKG+ A +IP G MG+ SY++ G KG
Sbjct: 286 ENHF----GKDVWVHRKGAISAREGEMGIIP-------------GAMGSYSYIVRG--KG 326
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
++F S+ HGAGRA SR+ + + V+ L+ Q + + V EE+ +YK++
Sbjct: 327 DPDSFMSSSHGAGRAYSRSAAMDKFSVESVIVDLKKQNVVLAKNKKSDVAEESRFAYKDI 386
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
DV+ + +++ +L V VIKG
Sbjct: 387 NDVM--ANQTELTEPVKRLFTVGVIKG 411
>gi|15896624|ref|NP_349973.1| hypothetical protein CA_C3383 [Clostridium acetobutylicum ATCC 824]
gi|337738587|ref|YP_004638034.1| hypothetical protein SMB_G3420 [Clostridium acetobutylicum DSM
1731]
gi|384460098|ref|YP_005672518.1| hypothetical protein CEA_G3386 [Clostridium acetobutylicum EA 2018]
gi|15026467|gb|AAK81313.1|AE007835_2 Uncharacterized conserved protein, RtcB/UPF0027 family [Clostridium
acetobutylicum ATCC 824]
gi|325510787|gb|ADZ22423.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336292544|gb|AEI33678.1| hypothetical protein SMB_G3420 [Clostridium acetobutylicum DSM
1731]
Length = 345
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 54/379 (14%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
V+Q+ +A+L G V +G PD+H P + + + I+ P +G + I
Sbjct: 16 AVEQVKKLASLKG-VENVIGYPDLH--PGKTPIGISIITKDVIY---PHLIG-NDIGCSI 68
Query: 96 QIVD--EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKW 153
+ + E+ K+ K + Q + + + F GNH+AE +VD+I D+
Sbjct: 69 SLFETSELKRKFKVEK--VMKTLQNSDLKNEIKKDFNLGTIGGGNHFAEFTLVDKILDES 126
Query: 154 AASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSN 213
+ D +V +++HSGSRG G ++ ++ ++ + N +
Sbjct: 127 ETTNF---DKNKVYLLVHSGSRGLGEEILRK---YIDYYSCQNGLAVNSEGFNNYISDYK 180
Query: 214 KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 273
K FAK+ + +I + N DL + I HN + E +
Sbjct: 181 KAVVFAKE--------NRQLIAKNLCQLLNLKAFDLKIEAI----HNGLELREDYI---- 224
Query: 274 KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTC 333
+HRKG+ A + V+I G+ G SY++ ++ F S
Sbjct: 225 ----IHRKGAATALNKY--------------VVIAGSRGDYSYIVKPINSSLETGF-SIA 265
Query: 334 HGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEEAPESYKNVTDVVDTC 391
HGAGR R+ + L + + ++ S + ++ LV EEAPE+YKN+ V+D
Sbjct: 266 HGAGRKWKRSGCKEKLQGKFSKKAIRNRSFSYNLICSNTNLVYEEAPEAYKNIDRVIDDL 325
Query: 392 HAVGISKKTFKLRPVAVIK 410
+ + K +L+P+ K
Sbjct: 326 LSFNLIKVVARLKPLITYK 344
>gi|104779684|ref|YP_606182.1| hypothetical protein PSEEN0410 [Pseudomonas entomophila L48]
gi|95108671|emb|CAK13365.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 378
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 118/276 (42%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +DE YD A + +GIE + +++HSGSRG G + L +
Sbjct: 135 GNHFAELQQLDENYDDAALAALGIERK-HLLLLVHSGSRGLGEAI----LREQVDLFGHH 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+E A + A +F L + D D V+ D
Sbjct: 190 GLEAGSE----ASTHYLGRHDGALRFAEANRQLIARRMLDRLRA---------DGDVLLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ + VDG L HRKG+T P D V+I G+ G SY
Sbjct: 237 INHNLVSPAQ--VDGLDGWL--HRKGAT----------PSDQG----AVVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ + + S HGAGR R++ + L + + +L + RV A L+
Sbjct: 279 LVQPIAD--ERSLLSLAHGAGRKWMRSECKDRLASRYSVEQLSRTALGSRVICADRALIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKAIDSVVGALREAGLVRVLARLKPVLTYK 372
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 80 KRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG-----HQVA 134
+RS T+G GNH+AE+Q +DE YD A + +GIE + +++HSGSRG G QV
Sbjct: 126 ERSLGTIGGGNHFAELQQLDENYDDAALAALGIERK-HLLLLVHSGSRGLGEAILREQVD 184
Query: 135 TAGNHYAE 142
G+H E
Sbjct: 185 LFGHHGLE 192
>gi|84497812|ref|ZP_00996609.1| hypothetical protein JNB_17033 [Janibacter sp. HTCC2649]
gi|84381312|gb|EAP97195.1| hypothetical protein JNB_17033 [Janibacter sp. HTCC2649]
Length = 389
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 120/281 (42%), Gaps = 47/281 (16%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ + DE WA +HSGSRG G+++A + + M R
Sbjct: 150 SGNHFVEVSL-DEQDRAWA--------------FLHSGSRGVGNKIAQHHIAIARQLMDR 194
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAFAKQ---FNTTPDDLD 250
I DR LA +++ A+ ++ L+ + D +Q F TP +
Sbjct: 195 YWITLQDRDLAYLVEGTDEFWAYIRELRWAQHYALLNREEMMDRVLRQLGDFVGTPVEEQ 254
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
V + HN + E+H K L V RKG+ A GQ LI G+
Sbjct: 255 ERV--NCHHNFTQQEKHW----GKELWVSRKGAIEA-------------KVGQLGLIPGS 295
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MGT SYV+ G M + S HGAGR SR+K+R+ E+ + + I
Sbjct: 296 MGTRSYVVEGLGNAM--SLNSAPHGAGRMFSRSKARKTFSRDELREAM----VGIEYKDS 349
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++E P +YK++ V+ A + K LR + +KG
Sbjct: 350 DAFIDEIPGAYKDIDQVM--ADAADLVKVRHTLRQIVNVKG 388
>gi|301019125|ref|ZP_07183329.1| release factor H-coupled RctB family protein [Escherichia coli MS
69-1]
gi|300399384|gb|EFJ82922.1| release factor H-coupled RctB family protein [Escherichia coli MS
69-1]
Length = 383
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 31 IQQLHTTANLPNMQ-RVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 87
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA-------GNHYAEIQI 145
I+ Y DK+ ++DV + + + F + GNH+AE+Q
Sbjct: 88 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHSWRSSLGSIGGGNHFAELQQ 147
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VDEI D + G+ D + +++HSGSRG G + + + A++
Sbjct: 148 VDEIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 205
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 206 -IAEHDDALAFARINR-------------------QMIALRIMQQVKATGSP-----VLD 240
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 241 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 282
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L +L + RV +L+
Sbjct: 283 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAANYTATQLSRTELGSRVICRDKQLIF 340
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 341 EEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLK 376
>gi|300697305|ref|YP_003747966.1| conserved protein of unknown function, RtcB homologue [Ralstonia
solanacearum CFBP2957]
gi|299074029|emb|CBJ53566.1| conserved protein of unknown function, RtcB homologue [Ralstonia
solanacearum CFBP2957]
Length = 332
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 43/298 (14%)
Query: 117 QVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 174
Q + +G+ GF + T GNH+AE+Q +D I+D AA +G+ + Q+ +++HSGS
Sbjct: 67 QATALAPAGT-GFDAALGTIGGGNHFAELQRLDTIHDAAAADALGL-NARQLLLLVHSGS 124
Query: 175 RGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVI 234
RG G + + L +A D + + ACA + + A +F +L +
Sbjct: 125 RGLGQAILDEQL----RAHGHDGLPQDSP--ACATYLARHDTAL--RFAKANRELIARRM 176
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
D Q + DV HN+ ++ G+ L HRKG+T
Sbjct: 177 LDRLHAQGQP---------LLDVHHNLVTPA--IIKGEHGWL--HRKGAT---------- 213
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P D PV+I G+ G SY++ + + S HGAGR R++ + L +
Sbjct: 214 PSD----AGPVVIPGSRGDFSYLVA--PQPSEHGLFSLAHGAGRKWMRSECKDRLAQRFS 267
Query: 355 LNKLESQ--GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L G + +L+ EEAPE+YK + V+ G+ K +LRPV K
Sbjct: 268 PTQLNRTRLGSHVICEDKQLIYEEAPEAYKPIESVIAPLEQAGLLKVIARLRPVLTYK 325
>gi|375149926|ref|YP_005012367.1| hypothetical protein [Niastella koreensis GR20-10]
gi|361063972|gb|AEW02964.1| protein of unknown function UPF0027 [Niastella koreensis GR20-10]
Length = 487
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 35/263 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+AE I+ E+ +K A +GI+ + ++ HSGSR G +A + A ++
Sbjct: 225 SGNHFAEFGII-EVGEKDAI--LGIDAGTYIGLLTHSGSRALGANIANH---YTKIAREK 278
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDM--HVIYDAFAKQFNTTPDDLDMHV 253
+ LA ++ + + N D H+I+ AK P
Sbjct: 279 RRLPGEAANLAWLNLDEQEGIEYWMAMNLAGDYASACHHIIHAKIAKAIGEQP-----LT 333
Query: 254 IYDVSHNIAKTEEHMV--DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTM 311
+ + HN A +E M+ DGK K L+VHRKG+T P + G +I G+M
Sbjct: 334 MVENHHNFA-WKEMMIGPDGKMKELIVHRKGAT----------PAGKDVLG---IIPGSM 379
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
+++ G KG + S HGAGR +SR+K+ ++ +E+ ++L+ G+ +
Sbjct: 380 TAPGFIVKG--KGETASVSSASHGAGRKMSRSKALNSITQKELKDQLQRHGVKLLGGG-- 435
Query: 372 LVMEEAPESYKNVTDVVDTCHAV 394
++EAP +YK++ V+ + A+
Sbjct: 436 --LDEAPNAYKDIEVVMKSQSAL 456
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 87 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEI 143
G+GNH+AE I+ E+ +K A +GI+ + ++ HSGSR G +A NHY +I
Sbjct: 224 GSGNHFAEFGII-EVGEKDAI--LGIDAGTYIGLLTHSGSRALGANIA---NHYTKI 274
>gi|309791130|ref|ZP_07685663.1| hypothetical protein OSCT_1614 [Oscillochloris trichoides DG-6]
gi|308226828|gb|EFO80523.1| hypothetical protein OSCT_1614 [Oscillochloris trichoides DG6]
Length = 450
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 39/275 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL-VQMEKAMK 194
+GNH+AE+ I + + D + ++ HSGSRG G+ +A + V +++ +
Sbjct: 206 SGNHFAELVIGERLQDLIPGAPANF-----AGLLTHSGSRGVGYAIANTYMRVAAQESKQ 260
Query: 195 RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVI 254
++ L R + + A + + HVI+D FA++ L +
Sbjct: 261 IADVPRFYEWLDLDR-EAGQEYWMAMELCGAYASANHHVIHDLFARR-----SRLPIVAQ 314
Query: 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
+ HN A +Q +++HRKG+T P + + G +I G+M +
Sbjct: 315 VENHHNFAW--------RQGDMVIHRKGAT----------PAEAGVLG---IIPGSMASP 353
Query: 315 SYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVM 374
SYV+ GT G E+ ST HGAGR SR+ +++ ++ V L Q + + L
Sbjct: 354 SYVVVGT--GNPESLASTSHGAGRRGSRSWAKQTINLGTVRRMLAEQDVLVE----GLSA 407
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409
+E+P +YK + V+ G+ ++ ++ P+AV+
Sbjct: 408 DESPLAYKEIERVIQIQEEAGLLQRVARMHPIAVL 442
>gi|383453793|ref|YP_005367782.1| hypothetical protein COCOR_01779 [Corallococcus coralloides DSM
2259]
gi|380728282|gb|AFE04284.1| hypothetical protein COCOR_01779 [Corallococcus coralloides DSM
2259]
Length = 474
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 119/277 (42%), Gaps = 31/277 (11%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q V+ + D+ A G+ + GQ+ M+HSGSR G V + A
Sbjct: 225 GNHFVEVQRVEAVVDRARAWAWGVRE-GQLAFMVHSGSRDMGKHVGRTWQERARAAWPSG 283
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAFAKQFNTTPDDLDMHVI 254
A + K + + K T + L+ ++ + + D++ ++
Sbjct: 284 APHPASGIFPLA--DPAKVREYLKAEATAANYAFLNRLLLAELVRQTLRELFGDVEAPLV 341
Query: 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
YDV HNI E + RKG+ P + QPV+I G+MG
Sbjct: 342 YDVPHNITLPWEGG--------WLARKGAC----------PAEED---QPVIIPGSMGAT 380
Query: 315 SYVLTGTEKGMQETFGSTCHGAGRALSR-AKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY++ G G + S HGAGRA SR + SR ++E L G+ +
Sbjct: 381 SYLMRGL--GNAKALASASHGAGRAHSRFSMSRGGAKHRE--EDLGLTGVDCIAMRAERR 436
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+EEAP +YK + VV + I ++ +LRP+ K
Sbjct: 437 IEEAPAAYKPIGPVVASQVDADIVREVARLRPLMTFK 473
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 67 WLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 126
W R + T+G GNH+ E+Q V+ + D+ A G+ + GQ+ M+HSGS
Sbjct: 203 WAPTGLRREGVVRDPGLATIGGGNHFVEVQRVEAVVDRARAWAWGVRE-GQLAFMVHSGS 261
Query: 127 RGFGHQV 133
R G V
Sbjct: 262 RDMGKHV 268
>gi|260548857|ref|ZP_05823079.1| rtcB protein [Acinetobacter sp. RUH2624]
gi|260408025|gb|EEX01496.1| rtcB protein [Acinetobacter sp. RUH2624]
Length = 401
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 127/284 (44%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE D W VM+HSGSRG G+ + T + +K +
Sbjct: 164 GNHFIEL-CIDENQDVW--------------VMLHSGSRGLGNVIGTYFIELAKKEAQHR 208
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNTTPD 247
D+ L+ SN + A+++ M +I +A F T +
Sbjct: 209 FGHVPDKDLSYFAEGSNSFNDYVEAVEWAQEYAFENRKEMMRLILEAIRPLLPSFQMTKE 268
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H + LLV RKG+ RA +IP
Sbjct: 269 AINCH------HNYVSRETHF----GENLLVTRKGAIRAGLDELGIIP------------ 306
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG SY++ G K E+F S HGAGR +SR+K++ + Q+++ ++QGI R
Sbjct: 307 -GSMGARSYIVRG--KANPESFCSCSHGAGRKMSRSKAKILFNQQDLIE--QTQGIECRK 361
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V++E P +YK++ +V+ + + + L+ V IKG
Sbjct: 362 DSS--VVDEIPSAYKDIDEVI--ANQSDLIEVVHTLKQVLCIKG 401
>gi|419917051|ref|ZP_14435331.1| hypothetical protein ECKD2_03995 [Escherichia coli KD2]
gi|388394920|gb|EIL56161.1| hypothetical protein ECKD2_03995 [Escherichia coli KD2]
Length = 379
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 27 IQQLHTTANLPNMQ-RVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA-------GNHYAEIQI 145
I+ Y DK+ ++DV + + + F + GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHSWRSSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VDEI D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 VDEIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 202 -IAEHDDALAFARINR-------------------QMIALRIMQQVKATGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L +L + RV +L+
Sbjct: 279 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAANYTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLK 372
>gi|320164376|gb|EFW41275.1| release factor H-coupled RctB family protein [Capsaspora owczarzaki
ATCC 30864]
Length = 483
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 128/285 (44%), Gaps = 52/285 (18%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT---DALVQMEKAM 193
GNH+AE+Q V+ + ++ +++G+ + + +++HSGSRGFG V + D L + A
Sbjct: 231 GNHFAELQQVERVENRELFAQLGMTE-ESLYLLVHSGSRGFGRAVLSRHLDTLGAVGVAQ 289
Query: 194 KRDNIET--NDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
ET AC N+ +I + F NT+
Sbjct: 290 GSPACETYLKSHDHACRWARCNRA-----------------IIANRFLDALNTSGTQ--- 329
Query: 252 HVIYDVSHN-IAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
I D+ HN +A+T +VDG + +HRKG+ P D PV+I G+
Sbjct: 330 --ILDIWHNSVARTP--LVDGS--SCWLHRKGAA----------PADKG----PVVIPGS 369
Query: 311 MGTCSYVLTGTEKGMQETFG--STCHGAGRALSRAKSR---RNLDYQEVLNKLESQGISI 365
G SY++ T + FG S HGAGR +R+K+ ++ Q G +
Sbjct: 370 RGAFSYLVMPTSNADAQEFGGYSLAHGAGRKWARSKALAVGKSRFPQPSALTTTPLGSHV 429
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ EEAP++YK ++DVVD + + + +RPV K
Sbjct: 430 VCEDKQLLYEEAPDAYKEISDVVDDLQSKNLIQVVAVMRPVISYK 474
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T+G GNH+AE+Q V+ + ++ +++G+ + + +++HSGSRGFG V
Sbjct: 227 TIGGGNHFAELQQVERVENRELFAQLGMTE-ESLYLLVHSGSRGFGRAV 274
>gi|421082445|ref|ZP_15543328.1| Release factor H-coupled RctB family protein [Pectobacterium
wasabiae CFBP 3304]
gi|401702682|gb|EJS92922.1| Release factor H-coupled RctB family protein [Pectobacterium
wasabiae CFBP 3304]
Length = 373
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 48/280 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +DEIY + I D Q+ +++HSGSRG G +
Sbjct: 130 GNHFAELQQLDEIYQPDTLHALHI-DPKQLLLLVHSGSRGLGQTI--------------- 173
Query: 197 NIETNDRQLACARINSNKNKAFA----KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+E + R+ + +N A + QF T + +I ++++T D
Sbjct: 174 -LEAHVREFGHQGLEANTPAAESYLEQHQFALTFATNNRRLIAQRMLERWHTEGD----- 227
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
DV+HN+ + ++G L HRKG+T P D PV+I G+ G
Sbjct: 228 AALDVNHNLVTST--TIEGISGWL--HRKGAT----------PADCG----PVIIPGSRG 269
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP-- 370
SY++ ++ S HGAGR R + + L + + +L RV
Sbjct: 270 DYSYIVQPISHA--DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQDR 327
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK + V+ G+ +L+PV K
Sbjct: 328 QLIFQEAPEAYKPIDSVIGAMQQAGLITLIARLKPVLTYK 367
>gi|338814126|ref|ZP_08626170.1| hypothetical protein ALO_17940 [Acetonema longum DSM 6540]
gi|337273895|gb|EGO62488.1| hypothetical protein ALO_17940 [Acetonema longum DSM 6540]
Length = 354
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 156/385 (40%), Gaps = 59/385 (15%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR---SPLTLGAGNHYA 93
V Q+ VA LPG + ++VGLPD+H P + + I+ + G G +
Sbjct: 19 VTQLQGVADLPGAM-QTVGLPDLH--PGKSPVGMAVVTQGVIYPHIIGGDIGCGMGLYDT 75
Query: 94 EIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYD 151
+ ++W I ++ + + + + T GNH+AE Q+VD YD
Sbjct: 76 GLDGRKFKLERWVTKLNNIRELVDLPTVNPYNEPSPIYDLGTIGGGNHFAEFQVVDTSYD 135
Query: 152 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT---DALVQMEKAMKRDNIETNDRQLACA 208
A +G++D Q+ +++HSGSRG+G + D + +E +D+ + A
Sbjct: 136 HTACHAIGLKD-SQLLLLVHSGSRGYGQSILKRYQDCRGITGTEPIKSYLEEHDQAILWA 194
Query: 209 RINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
N+ K + ++ Y AK+ + D HN +
Sbjct: 195 --ERNREIVVVKLLD--------YLGYTPQAKK------------LIDCQHNFME----- 227
Query: 269 VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQET 328
++ L +HRKG+ A PV+I G+ G +Y++
Sbjct: 228 ---QKGDLYIHRKGAVSA--------------ERGPVVIPGSRGALTYIVQPAGNTAMSA 270
Query: 329 FGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVMEEAPESYKNVTD 386
F S HGAGR +R+ + + + + + + RV L+ +EAPE+YK++
Sbjct: 271 F-SLSHGAGRKWARSLCKSRIREKYDRDTIRQTKLKSRVVCHDTDLLFQEAPEAYKSIDS 329
Query: 387 VVDTCHAVGISKKTFKLRPVAVIKG 411
V+D + LRPV KG
Sbjct: 330 VIDILLQYELITVVATLRPVLTYKG 354
>gi|149916894|ref|ZP_01905395.1| hypothetical protein PPSIR1_21639 [Plesiocystis pacifica SIR-1]
gi|149822172|gb|EDM81563.1| hypothetical protein PPSIR1_21639 [Plesiocystis pacifica SIR-1]
Length = 411
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 120/299 (40%), Gaps = 67/299 (22%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT- 183
R F + T GNH+AE+ V+ I D AA +G++ G V ++ HSGSRG G +A
Sbjct: 163 RCFATSLGTIGGGNHFAELGAVESITDPAAAEALGLQRRGHV-ILAHSGSRGLGRALALR 221
Query: 184 ----------DALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHV 233
D + + +R L C R+ S + A + + T
Sbjct: 222 WGPGGLVETEDQATYLAELAGAVRFAIANRVLLCWRMLSARGAAKSSRIRGT-------- 273
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
+D+ HN E G+Q VHRKG
Sbjct: 274 ---------------------FDLVHNFVSDE-----GEQG--WVHRKGCA--------- 296
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
P + G P+++ G+ G S+++ G G S HGAGR ++R ++R L +
Sbjct: 297 -PAE---QGVPLVVLGSRGAPSWIMRG--GGQPACLCSVAHGAGRRMTRGEARDKLKQRH 350
Query: 354 VLNKLESQGISIRVAS--PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
++ + RV KL+ EE P++YK + +++T G + + P+ +K
Sbjct: 351 TRASVKQNAVGRRVLCDDTKLLYEEHPDAYKAIDPIIETLERAGAATRVAASSPLLTVK 409
>gi|333915805|ref|YP_004489537.1| release factor H-coupled RctB family protein [Delftia sp. Cs1-4]
gi|333746005|gb|AEF91182.1| release factor H-coupled RctB family protein [Delftia sp. Cs1-4]
Length = 384
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 120/284 (42%), Gaps = 60/284 (21%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q+VD +Y+ G D +V +M+HSGSRG G A+ R
Sbjct: 144 GNHFAELQVVDTLYED------GALDRKRVHLMVHSGSRGLG------------GAILRA 185
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM----- 251
++E + + A + L H AFA Q N +
Sbjct: 186 HVE------------AFSHDGLAASSDAATQYLRQHAAAIAFA-QLNRASIAARLLRALR 232
Query: 252 ---HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
+ D++HN H G+ L HRKG+T P D L V+I
Sbjct: 233 TRGQALLDITHN--HVIAHHWRGEDGFL--HRKGAT----------PADQGL----VVIP 274
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL--ESQGISIR 366
G+ G SY++ G E S HGAGR +R L + L++L G ++
Sbjct: 275 GSRGDYSYLVRPV-AGRDEALHSLAHGAGRKWARTDCMGRLRPRFTLDELLRTQFGSAVV 333
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
A +LV EEAP++YK+V VV + G+ + +LRP+ K
Sbjct: 334 CADRELVYEEAPQAYKDVDSVVASLQEAGLVQLVARLRPLLTYK 377
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
T+G GNH+AE+Q+VD +Y+ G D +V +M+HSGSRG G + A
Sbjct: 140 TIGGGNHFAELQVVDTLYED------GALDRKRVHLMVHSGSRGLGGAILRA 185
>gi|222155078|ref|YP_002555217.1| hypothetical protein LF82_040 [Escherichia coli LF82]
gi|222032083|emb|CAP74822.1| hypothetical protein LF82_040 [Escherichia coli LF82]
Length = 383
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 31 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 87
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 88 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 147
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VD+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 148 VDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGCDDALRY- 205
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 206 -IAEHDDALAFARINRQ-------------------LIALRIMQQVKATGSP-----VLD 240
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 241 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 282
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 283 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 340
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 341 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 376
>gi|432615560|ref|ZP_19851688.1| hypothetical protein A1UM_00991 [Escherichia coli KTE75]
gi|431156944|gb|ELE57605.1| hypothetical protein A1UM_00991 [Escherichia coli KTE75]
Length = 465
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 79/327 (24%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
T G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V G H+
Sbjct: 218 TPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYV---GRHW---- 269
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D +W GH+ L + + + ++
Sbjct: 270 -MDRARAEWPT----------------------GHKHPQSGLYGLAGGLAEEYLQA---- 302
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
I A+ + ++ A F+ + H++ DV HNI
Sbjct: 303 -----IGMAARYAWLNRVTIA------EMVRVCLANLFHQD----NSHLVVDVPHNIILR 347
Query: 265 EEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKG 324
E M +HRKG+T A G LI G+MG S++ G G
Sbjct: 348 EHEMN--------IHRKGATPA-------------RVGNLALIPGSMGDYSWLAVGC--G 384
Query: 325 MQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV 384
E S HGAGR+ R ++ R+ +E + L Q +++R + EEAP +YK++
Sbjct: 385 NPEWLWSCSHGAGRS-QRRQAMRSRATEE--STLPWQCVTLR---EERRFEEAPAAYKDI 438
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++ G+ + + RP KG
Sbjct: 439 GPVIEAQQEAGLIQPAVRFRPWLTFKG 465
>gi|408828288|ref|ZP_11213178.1| hypothetical protein SsomD4_13963 [Streptomyces somaliensis DSM
40738]
Length = 397
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 127/282 (45%), Gaps = 50/282 (17%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+ ++ G V +M+HSGSR G ++A + +++ + +
Sbjct: 160 SGNHFVEV---------------CLDSTGSVWLMLHSGSRNIGKELA-EHHIEVARRLPH 203
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
N + DR LA ++ + A+ A+++ + M ++ D K+F
Sbjct: 204 -NQDLIDRDLAVFIADTPQMAAYRHDLFWAQEYARYNRSVMMALLKDVVRKEFRKAGVTF 262
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + HN E + DG LLV RKG+ RA + +IP G
Sbjct: 263 EQEI--SCHHNYVAEERY--DGMD--LLVTRKGAIRAGSGEYGIIP-------------G 303
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY++ G G +++F S HGAGR +SR ++R Q+ LE Q +
Sbjct: 304 SMGTGSYIVKGL--GNEKSFNSASHGAGRRMSRNAAKRRFSTQD----LEEQTRGVECRK 357
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 358 DSGVVDEIPGAYKPIEKVID--QQRDLVEVVAKLKQVVCVKG 397
>gi|289770990|ref|ZP_06530368.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289701189|gb|EFD68618.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 397
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 166/399 (41%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G +
Sbjct: 27 LQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSG--SRGFGHQVATAG--NHYAEIQIVDE--- 148
+ +++ + + IE V +H G H +AT G + + V E
Sbjct: 86 LTANDLPGNLSRLRSKIEQAIPVGRGMHDSPLEPGRFHGLATGGWDDFWGRFDGVAEAVK 145
Query: 149 IYDKWAASKMGI------------EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG + G V +M+HSGSR G ++A + +K
Sbjct: 146 FRHERAGKQMGTLGGGNHFVEVCTDTTGSVWLMLHSGSRNIGKELAEHHIGVAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ L M ++ D K+F +
Sbjct: 206 GLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRTLMMALLKDVVRKEFKKAKPVFEQE 265
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + DG LLV RKG+ RA +IP G+MG
Sbjct: 266 I--SAHHNYVAEERY--DGMD--LLVTRKGAIRAGSGDFGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G ++F S HGAGR +SR ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNAKSFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKPIDQVIDQQR--DLVEVVAKLKQVVCVKG 397
>gi|218703549|ref|YP_002411068.1| hypothetical protein ECUMN_0299 [Escherichia coli UMN026]
gi|387605768|ref|YP_006094624.1| hypothetical protein EC042_0294 [Escherichia coli 042]
gi|59889805|emb|CAH19161.1| Hypothetical protein Ec042-0294 [Escherichia coli 042]
gi|218430646|emb|CAR11514.1| conserved hypothetical protein [Escherichia coli UMN026]
gi|284920068|emb|CBG33126.1| conserved hypothetical protein [Escherichia coli 042]
Length = 383
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 31 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 87
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 88 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 147
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VDEI D + G+ D + +++HSGSRG G + + + A++
Sbjct: 148 VDEIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 205
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 206 -IAEHDDVLAFARINRQ-------------------MIALRIMQQVKATGSP-----VLD 240
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 241 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 282
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 283 LVQPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKCTATQLSRTELGSRVICRDKQLIF 340
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 341 EEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLK 376
>gi|262278435|ref|ZP_06056220.1| rtcb protein [Acinetobacter calcoaceticus RUH2202]
gi|262258786|gb|EEY77519.1| rtcb protein [Acinetobacter calcoaceticus RUH2202]
Length = 422
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SR +++R ++ + ++QG+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTQGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
>gi|21221731|ref|NP_627510.1| hypothetical protein SCO3299 [Streptomyces coelicolor A3(2)]
gi|4678913|emb|CAB41285.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 397
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 166/399 (41%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G +
Sbjct: 27 LQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSG--SRGFGHQVATAG--NHYAEIQIVDE--- 148
+ +++ + + IE V +H G H +AT G + + V E
Sbjct: 86 LTANDLPGDLSRLRSKIEQAIPVGRGMHDSPLEPGRFHGLATGGWDDFWGRFDGVAEAVK 145
Query: 149 IYDKWAASKMGI------------EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG + G V +M+HSGSR G ++A + +K
Sbjct: 146 FRHERAGKQMGTLGGGNHFVEVCTDTTGSVWLMLHSGSRNIGKELAEHHIGVAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ L M ++ D K+F +
Sbjct: 206 GLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRTLMMALLKDVVRKEFKKAKPIFEQE 265
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + DG LLV RKG+ RA +IP G+MG
Sbjct: 266 I--SAHHNYVAEERY--DGMD--LLVTRKGAIRAGSGDFGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G ++F S HGAGR +SR ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNAKSFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKPIDQVIDQQR--DLVEVVAKLKQVVCVKG 397
>gi|386857953|ref|YP_006262130.1| RtcB protein [Deinococcus gobiensis I-0]
gi|380001482|gb|AFD26672.1| RtcB protein [Deinococcus gobiensis I-0]
Length = 469
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 37/262 (14%)
Query: 131 HQVATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
+Q+ T+G NH+ E + ++G+E + V+ HSGSRGFG QVA
Sbjct: 214 NQIGTSGSGNHFVEFGTLSLAQPD---PELGLEAGEYLAVLSHSGSRGFGAQVAGHFTAL 270
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMH-VIYDAFAKQFNTTP 246
+ I+ ++LA ++ + +A+ + N L H +I+ A+ +P
Sbjct: 271 AGRL--HPGIDKVAQKLAWLPLDGEEGQAYWQAMNLAGRYALANHDLIHARLARALGVSP 328
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ SHN+A E +VDG++ L+VHRKG+T A GQ L
Sbjct: 329 LAQASN-----SHNLAWKE--VVDGQE--LIVHRKGATPAA-------------KGQLGL 366
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
I G+M Y++ G +G S HGAGR L R ++ L ++V LE +G+++
Sbjct: 367 IPGSMADPGYLVRG--RGHAPALASASHGAGRQLGRRAAQNALSKKDVQAYLEGRGVTLI 424
Query: 367 VASPKLVMEEAPESYKNVTDVV 388
++EAP++YK + +V+
Sbjct: 425 GGG----IDEAPQAYKRIEEVI 442
>gi|293403380|ref|ZP_06647471.1| hypothetical protein ECGG_04091 [Escherichia coli FVEC1412]
gi|298378992|ref|ZP_06988873.1| hypothetical protein ECFG_04396 [Escherichia coli FVEC1302]
gi|300898964|ref|ZP_07117257.1| release factor H-coupled RctB family protein [Escherichia coli MS
198-1]
gi|419937294|ref|ZP_14454203.1| hypothetical protein EC5761_25399 [Escherichia coli 576-1]
gi|432351900|ref|ZP_19595212.1| release factor H-coupled RctB family protein [Escherichia coli
KTE2]
gi|432400376|ref|ZP_19643137.1| release factor H-coupled RctB family protein [Escherichia coli
KTE26]
gi|432429405|ref|ZP_19671869.1| release factor H-coupled RctB family protein [Escherichia coli
KTE181]
gi|432459236|ref|ZP_19701402.1| release factor H-coupled RctB family protein [Escherichia coli
KTE204]
gi|432474294|ref|ZP_19716307.1| release factor H-coupled RctB family protein [Escherichia coli
KTE208]
gi|432492565|ref|ZP_19734405.1| release factor H-coupled RctB family protein [Escherichia coli
KTE213]
gi|432520903|ref|ZP_19758070.1| release factor H-coupled RctB family protein [Escherichia coli
KTE228]
gi|432541119|ref|ZP_19777996.1| release factor H-coupled RctB family protein [Escherichia coli
KTE235]
gi|432629803|ref|ZP_19865756.1| release factor H-coupled RctB family protein [Escherichia coli
KTE80]
gi|432639375|ref|ZP_19875222.1| release factor H-coupled RctB family protein [Escherichia coli
KTE83]
gi|432664453|ref|ZP_19900051.1| release factor H-coupled RctB family protein [Escherichia coli
KTE116]
gi|432773446|ref|ZP_20007738.1| release factor H-coupled RctB family protein [Escherichia coli
KTE54]
gi|432837818|ref|ZP_20071312.1| release factor H-coupled RctB family protein [Escherichia coli
KTE140]
gi|432884164|ref|ZP_20099189.1| release factor H-coupled RctB family protein [Escherichia coli
KTE158]
gi|432909833|ref|ZP_20117081.1| release factor H-coupled RctB family protein [Escherichia coli
KTE190]
gi|433017222|ref|ZP_20205495.1| release factor H-coupled RctB family protein [Escherichia coli
KTE105]
gi|433051506|ref|ZP_20238752.1| release factor H-coupled RctB family protein [Escherichia coli
KTE122]
gi|433066412|ref|ZP_20253264.1| release factor H-coupled RctB family protein [Escherichia coli
KTE128]
gi|433157186|ref|ZP_20342066.1| release factor H-coupled RctB family protein [Escherichia coli
KTE177]
gi|433176652|ref|ZP_20361129.1| release factor H-coupled RctB family protein [Escherichia coli
KTE82]
gi|433201689|ref|ZP_20385503.1| release factor H-coupled RctB family protein [Escherichia coli
KTE95]
gi|291429233|gb|EFF02253.1| hypothetical protein ECGG_04091 [Escherichia coli FVEC1412]
gi|298280105|gb|EFI21609.1| hypothetical protein ECFG_04396 [Escherichia coli FVEC1302]
gi|300357406|gb|EFJ73276.1| release factor H-coupled RctB family protein [Escherichia coli MS
198-1]
gi|388398064|gb|EIL59006.1| hypothetical protein EC5761_25399 [Escherichia coli 576-1]
gi|430880890|gb|ELC04154.1| release factor H-coupled RctB family protein [Escherichia coli
KTE2]
gi|430930491|gb|ELC50992.1| release factor H-coupled RctB family protein [Escherichia coli
KTE26]
gi|430948002|gb|ELC67684.1| release factor H-coupled RctB family protein [Escherichia coli
KTE181]
gi|430992839|gb|ELD09200.1| release factor H-coupled RctB family protein [Escherichia coli
KTE204]
gi|431010234|gb|ELD24582.1| release factor H-coupled RctB family protein [Escherichia coli
KTE208]
gi|431013540|gb|ELD27270.1| release factor H-coupled RctB family protein [Escherichia coli
KTE213]
gi|431045866|gb|ELD56004.1| release factor H-coupled RctB family protein [Escherichia coli
KTE228]
gi|431064738|gb|ELD73597.1| release factor H-coupled RctB family protein [Escherichia coli
KTE235]
gi|431174923|gb|ELE74955.1| release factor H-coupled RctB family protein [Escherichia coli
KTE80]
gi|431185691|gb|ELE85396.1| release factor H-coupled RctB family protein [Escherichia coli
KTE83]
gi|431205012|gb|ELF03522.1| release factor H-coupled RctB family protein [Escherichia coli
KTE116]
gi|431321132|gb|ELG08747.1| release factor H-coupled RctB family protein [Escherichia coli
KTE54]
gi|431392155|gb|ELG75756.1| release factor H-coupled RctB family protein [Escherichia coli
KTE140]
gi|431420392|gb|ELH02677.1| release factor H-coupled RctB family protein [Escherichia coli
KTE158]
gi|431447909|gb|ELH28628.1| release factor H-coupled RctB family protein [Escherichia coli
KTE190]
gi|431537805|gb|ELI13918.1| release factor H-coupled RctB family protein [Escherichia coli
KTE105]
gi|431576193|gb|ELI48892.1| release factor H-coupled RctB family protein [Escherichia coli
KTE122]
gi|431592587|gb|ELI63159.1| release factor H-coupled RctB family protein [Escherichia coli
KTE128]
gi|431682849|gb|ELJ48497.1| release factor H-coupled RctB family protein [Escherichia coli
KTE177]
gi|431711203|gb|ELJ75557.1| release factor H-coupled RctB family protein [Escherichia coli
KTE82]
gi|431726791|gb|ELJ90560.1| release factor H-coupled RctB family protein [Escherichia coli
KTE95]
Length = 379
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 27 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VDEI D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 VDEIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 202 -IAEHDDVLAFARINR-------------------QMIALRIMQQVKATGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 279 LVQPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKCTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLK 372
>gi|300693608|ref|YP_003749581.1| rtcb-like protein [Ralstonia solanacearum PSI07]
gi|299075645|emb|CBJ34942.1| conserved hypothethical protein, RtcB homologue [Ralstonia
solanacearum PSI07]
Length = 378
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 167/386 (43%), Gaps = 52/386 (13%)
Query: 37 VKQIANVAALPGIVGRSV-GLPDVH---SVP-STQWLSDNTMRSSNIWKR--SPLTLGAG 89
++Q+ A LPG+ R V G+PD+H P + S + + I + L A
Sbjct: 27 IQQLQTTATLPGM--RHVAGMPDLHPGLGYPVGAAFFSAGRLYPALIGNDIGCGMALWAT 84
Query: 90 NHYAEIQIVDEIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIV 146
+ A+ +D++ + ++D ++ + GF + T GNH+AE+Q +
Sbjct: 85 DLDAKKVSLDKLEKRLGNLDGPLDDAWHELATALAPAGTGFYAALGTIGGGNHFAELQRI 144
Query: 147 DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLA 206
D +YD AA+ D Q+ +++HSGSRG G + + L A D + + A
Sbjct: 145 DTVYDD-AAADALGLDARQLLLLVHSGSRGLGQAILDEQL----GAHGHDGLPQDSP--A 197
Query: 207 CARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 266
CA + + A QF +L + D Q + DV HN+
Sbjct: 198 CAAYLARHDAAL--QFAKANRELIARRMLDRLHAQGRP---------LLDVHHNLVTPA- 245
Query: 267 HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQ 326
+V G++ L HRKG+T P D G PV+I G+ G SY++ + +
Sbjct: 246 -VVKGERGWL--HRKGAT----------PSD----GGPVVIPGSRGDFSYLVA--PQPSE 286
Query: 327 ETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ--GISIRVASPKLVMEEAPESYKNV 384
+ S HGAGR R++ + L + +L G + +L+ EEAPE+YK +
Sbjct: 287 HSLFSLAHGAGRKWMRSECKDRLARRFSPAQLNRTRLGSHVICEDRQLIYEEAPEAYKPI 346
Query: 385 TDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ G+ K +LRPV K
Sbjct: 347 DSVIAPLEQAGLVKVLARLRPVLTYK 372
>gi|387615598|ref|YP_006118620.1| hypothetical protein NRG857_01280 [Escherichia coli O83:H1 str. NRG
857C]
gi|312944859|gb|ADR25686.1| hypothetical protein NRG857_01280 [Escherichia coli O83:H1 str. NRG
857C]
Length = 379
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 27 IQQLHTTANLPNMQ-RVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VD+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 VDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGCDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 202 -IAEHDDALAFARINR-------------------QLIALRIMQQVKATGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 279 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 372
>gi|345008416|ref|YP_004810770.1| hypothetical protein [Streptomyces violaceusniger Tu 4113]
gi|344034765|gb|AEM80490.1| protein of unknown function UPF0027 [Streptomyces violaceusniger Tu
4113]
Length = 397
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 173/419 (41%), Gaps = 62/419 (14%)
Query: 21 LRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWK 80
+R P V G ++Q+ NVA LP I G +V +PDVH S M +
Sbjct: 13 IRMWADPSTVEGV--AMQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMAGAVCPA 69
Query: 81 RSPLTLGAGNHYAEIQIV-DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG--HQVATAG 137
+ +G G + + D++ + + IE + V +H G H TAG
Sbjct: 70 AVGVDIGCGMSAVKTSLTADDLPGDLSRLRSRIEQMIPVGRGMHDDPVDPGRLHAFPTAG 129
Query: 138 -----NHYAEIQIVDEIYDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQ 180
+ + + + + A +MG ++D G V +M+HSGSR G +
Sbjct: 130 WDDFWSRFGGVAEAVKFRQERAVKQMGSLGSGNHFIEFCLDDEGSVWLMLHSGSRNIGKE 189
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVI 234
+A + Q K N + DR LA ++ + A+ A+++ + M +
Sbjct: 190 LAEYHIGQARKLPH--NQDLIDRDLAVFIADTPQMAAYRHDLFWAQEYAKYNRAIMMALF 247
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE--EHMVDGKQKTLLVHRKGSTRAFPPHHP 292
D K+F + + HN E EHM LLV RKG+ RA +
Sbjct: 248 QDVVRKEFRKARPVFE--PVISCHHNYVAEERYEHM------DLLVTRKGAIRAGSGDYG 299
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
+IP G+MGT SY++ G G + +F S HGAGR +SR +++ +
Sbjct: 300 IIP-------------GSMGTGSYIVRGL--GNEASFNSASHGAGRKMSRNAAKKRFSTR 344
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ LE Q + V++E P +YK + V+D + + +L+ V +KG
Sbjct: 345 D----LEEQTRGVECRKDSGVVDEIPGAYKPIEKVIDQQR--DLVEVVARLKQVVCVKG 397
>gi|212710166|ref|ZP_03318294.1| hypothetical protein PROVALCAL_01220 [Providencia alcalifaciens DSM
30120]
gi|212687165|gb|EEB46693.1| hypothetical protein PROVALCAL_01220 [Providencia alcalifaciens DSM
30120]
Length = 378
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE Q VD+I + + G+ D ++ +++HSGSRG G + L Q + +
Sbjct: 135 GNHFAEFQAVDKILNTELFEQSGL-DKQKLLLLVHSGSRGLGQSI----LRQHVEQHSHN 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
++ + + A +N++++ Q N L M +Q+ D
Sbjct: 190 GLDEHSDE-AATYLNAHQDALDFSQLNRQLIGLRMMQQVKTSGEQY------------LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ E +D L HRKG+T P D + V+I G+ G SY
Sbjct: 237 LNHNLV--EPCRIDETDGWL--HRKGAT----------PADRGM----VIIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ + + S HGAGR R + + L ++ +L + RV A+ +L+
Sbjct: 279 LVAPVANEI--SLNSLAHGAGRKWMRTECKGRLSHRYTPLQLSRTSLGSRVICANKQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP+SYK++ V+D+ VGI + +L PV K
Sbjct: 337 EEAPQSYKSIDTVIDSMVDVGIIQVIARLIPVITYK 372
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 56 LPDVHSVPSTQWLSDNT--MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIE 113
L D+ S +WL ++ S+ + S ++G GNH+AE Q VD+I + + G+
Sbjct: 100 LSDMTDHASQEWLDEHVPDKMKSHRFMTSLSSIGGGNHFAEFQAVDKILNTELFEQSGL- 158
Query: 114 DVGQVCVMIHSGSRGFGHQV 133
D ++ +++HSGSRG G +
Sbjct: 159 DKQKLLLLVHSGSRGLGQSI 178
>gi|71907502|ref|YP_285089.1| hypothetical protein Daro_1873 [Dechloromonas aromatica RCB]
gi|71847123|gb|AAZ46619.1| Protein of unknown function UPF0027 [Dechloromonas aromatica RCB]
Length = 398
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE W VM+HSGSRG G+ +AT + + M+R
Sbjct: 161 GNHFIEV-CLDESEQLW--------------VMLHSGSRGIGNALATYFIELARRDMERQ 205
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAK---QFNTTPD 247
I DR L + S + A+++ + M ++ A + +F+ T +
Sbjct: 206 QIHLPDRDLGYFKEGSAHFDDYVEAVHWAQEYAFANRECMMDLVLAALHRHLPEFSVTSE 265
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H + V RKG+ RA G +I
Sbjct: 266 VVNCH------HNYVAREHHY----GADVWVTRKGAIRA-------------RAGDLGII 302
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG SY++ G KG E+F S+ HGAGR +SR + R + E + +++G+ R
Sbjct: 303 PGSMGARSYIVRG--KGNPESFDSSAHGAGRRMSRNAAART--FSEADLRRQTEGVVCR- 357
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
K V++E P +YK++ V+D +++ L+ V +KG
Sbjct: 358 -KDKSVIDEIPGAYKDIDAVMDNQR--DLTETLHTLKQVVCVKG 398
>gi|261822833|ref|YP_003260939.1| hypothetical protein Pecwa_3596 [Pectobacterium wasabiae WPP163]
gi|261606846|gb|ACX89332.1| release factor H-coupled RctB family protein [Pectobacterium
wasabiae WPP163]
gi|385873276|gb|AFI91796.1| Release factor H-coupled RctB family protein [Pectobacterium sp.
SCC3193]
Length = 373
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 118/276 (42%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +DEIY + I D Q+ +++HSGSRG G + + +
Sbjct: 130 GNHFAELQQLDEIYQPDTLHALHI-DPKQLLLLVHSGSRGLGQTILEAHVREFGHHGLEA 188
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
N + LA FA F T + +I ++++T D D
Sbjct: 189 NTPAAESYLA--------QHQFALTFATN----NRRLIAQRMLERWHTEGD-----AALD 231
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + ++G L HRKG+T P D PV+I G+ G SY
Sbjct: 232 VNHNLVTST--TIEGISGWL--HRKGAT----------PADCG----PVIIPGSRGDYSY 273
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP--KLVM 374
++ ++ S HGAGR R + + L + + +L RV +L+
Sbjct: 274 IVQPIPHA--DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQDRQLIF 331
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+EAPE+YK + V+ G+ +L+PV K
Sbjct: 332 QEAPEAYKPIDSVIGAMQQAGLITLIARLKPVLTYK 367
>gi|296123619|ref|YP_003631397.1| hypothetical protein Plim_3385 [Planctomyces limnophilus DSM 3776]
gi|296015959|gb|ADG69198.1| protein of unknown function UPF0027 [Planctomyces limnophilus DSM
3776]
Length = 462
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 43/259 (16%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E E+ A+ ++G+E ++ HSGSRG G V D +M +A
Sbjct: 213 SGNHFVEF---GELTLAAASPELGLEAGTYTALLSHSGSRGPGAAV-CDTYSRMAQARLP 268
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQFNTTPDDLDMHV 253
E R LA ++S + + N D + VI+ +K+ L +
Sbjct: 269 RGCEDFGR-LAWLSLDSEAGQEYWAAMNLMGDFAAANHDVIHRLVSKK-------LGGRI 320
Query: 254 IYDVS--HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL--IGG 309
I V HN A E H + L+VHRKG+T A GQ VL I G
Sbjct: 321 IAGVENHHNFAWKEVHF----GRELIVHRKGATPA---------------GQGVLGVIPG 361
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+M ++++ G KG+ E++ S HGAGR +SR K+R ++ +V +LE++G+ + A
Sbjct: 362 SMADPAFIVKG--KGVVESYESASHGAGRVMSRTKARDQFNFSKVRKELEAKGVRVISAG 419
Query: 370 PKLVMEEAPESYKNVTDVV 388
+E P YKN+ V+
Sbjct: 420 S----DEVPGVYKNILSVM 434
>gi|108763429|ref|YP_629773.1| hypothetical protein MXAN_1521 [Myxococcus xanthus DK 1622]
gi|108467309|gb|ABF92494.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length = 474
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 43/283 (15%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSGSR G V + +A
Sbjct: 225 GNHFVEVQRVEAVEDRARAWDWGVRE-GQLAFMIHSGSRDVGKHVGVAWQDRARQAWPAG 283
Query: 197 N-------IETNDRQLACARINSNKNKA-FAKQFNTTPDDLDMHVIYDAFAKQFNTTPDD 248
+ D +L + + A +A +L + + F D
Sbjct: 284 TPLPASGILPLGDARLVTEYLEAEATAANYAFLNRLLLAELLRQTLRELFG--------D 335
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
++ ++YDV HN+ E + RKG+ P + QPV+I
Sbjct: 336 VEAPLVYDVPHNLTLPYEGG--------WLARKGAC----------PAGAE---QPVIIP 374
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSR-AKSRRNLDYQEVLNKLESQGISIRV 367
G+MG S+++ G G S HGAGRA SR + SR D E L G+
Sbjct: 375 GSMGATSFLMVGC--GDARALESASHGAGRARSRFSLSRGGADQSEA--ALGLTGVDCIT 430
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +EEAP +YK + VVD GI ++ +L P+ K
Sbjct: 431 LRAERRVEEAPAAYKPIRPVVDAQVEAGIVREVARLSPLLTFK 473
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 66 QWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 125
+W ++ R + T+G GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSG
Sbjct: 202 RWAPESFTREGLVRDAGLATIGGGNHFVEVQRVEAVEDRARAWDWGVRE-GQLAFMIHSG 260
Query: 126 SRGFGHQVATA 136
SR G V A
Sbjct: 261 SRDVGKHVGVA 271
>gi|225023355|ref|ZP_03712547.1| hypothetical protein EIKCOROL_00213 [Eikenella corrodens ATCC
23834]
gi|224943833|gb|EEG25042.1| hypothetical protein EIKCOROL_00213 [Eikenella corrodens ATCC
23834]
Length = 389
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 121/276 (43%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q VD +Y + D Q+ ++HSGSRG G Q+ L + A
Sbjct: 145 GNHFAELQTVDTVYRPERLPENFDTDCLQL--LVHSGSRGLGQQI----LRRHVDAHGHQ 198
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+ N + A N AFA+ + +I + ++++ + + D
Sbjct: 199 GLPENSSEAATYLAEHNDALAFARA--------NRLLIAERMLERWHA-----EGRCLLD 245
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V HN + E + G+ T +HRKG+T P D L VLI G+ G SY
Sbjct: 246 VHHNFLQYTE--IGGE--TGWLHRKGTT----------PSDCGL----VLIPGSRGDYSY 287
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI-SIRVASPK-LVM 374
L S HGAGR R + + L ++ + L SI V + K LV
Sbjct: 288 -LVEPAADCSIALNSLAHGAGRKWQRGECKGRLSHKYSADSLRRTAFGSIVVCADKALVY 346
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YKN+ +++ G+ + +L+PV K
Sbjct: 347 EEAPQAYKNIDSIIEAMRQAGLIEPIARLKPVLTYK 382
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
++G GNH+AE+Q VD +Y + D Q +++HSGSRG G Q+
Sbjct: 141 SIGGGNHFAELQTVDTVYRPERLPENFDTDCLQ--LLVHSGSRGLGQQI 187
>gi|168025404|ref|XP_001765224.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683543|gb|EDQ69952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/426 (25%), Positives = 179/426 (42%), Gaps = 87/426 (20%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPST------------------------QWLSDN 71
++Q+ VA LPG+V +VGLPD+H+ S L +
Sbjct: 127 AIEQLNYVANLPGVV-LAVGLPDLHAGASCPIGATIATNGLIYPSLVGSDIGCGMLLVET 185
Query: 72 TMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 131
++ SS+ K P TL + +AE ++E +D + +E G S G
Sbjct: 186 SLTSSSACK--PRTL---DRWAECIQLEEPWD--GDYSLMLERAGVEPTQFDRESLG--- 235
Query: 132 QVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEK 191
GNH+AE+Q+V+ I ++ AA+ G+ + +V + +HSGSRG+G + + + +
Sbjct: 236 -TVGRGNHFAELQVVERIENEEAAATFGLTE-KKVYICVHSGSRGYGESILS--MYSKQH 291
Query: 192 AMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
++ET + Q + + ++ N + N +I Q N
Sbjct: 292 GGAGTDLETEEAQ---SYLQAHDNACKWAKIN-------RRIIATRLVDQLNGEC----T 337
Query: 252 HVIYDVSH-NIAKTEE--HMVDGK-----QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
+ D++H N+ KT E ++ D + + +HRKG+ P D
Sbjct: 338 RFLLDITHNNVVKTSEDQNLTDAGVSEPVEGEIYLHRKGAA----------PTDQ----G 383
Query: 304 PVLIGGTMGTCSY-VLTGTEKGMQETFGSTCHGAGRALSRAKSR--RNLDYQEVLNKLES 360
V+I G+ G SY VL K + S HGAGR L+R +R Y + L +
Sbjct: 384 AVMIPGSRGALSYLVLPNAPKQAARSGWSLAHGAGRRLARNAARVGGKAQYPDAKQLLVT 443
Query: 361 QGISIRVASPK-LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLA 419
+ S V K L+ EE PE+YK+ VV G+ + ++P+ K
Sbjct: 444 ELQSRVVCDDKGLLYEERPEAYKDAACVVADLVGDGLCRLVAVMKPILTYK--------M 495
Query: 420 QSMFDH 425
+ +FDH
Sbjct: 496 REIFDH 501
>gi|451984186|ref|ZP_21932443.1| hypothetical protein PA18A_1551 [Pseudomonas aeruginosa 18A]
gi|451758115|emb|CCQ84966.1| hypothetical protein PA18A_1551 [Pseudomonas aeruginosa 18A]
Length = 467
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V + + A R
Sbjct: 222 SGNHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVGQRWMDRARTAWPR 280
Query: 196 ------DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ +LA + + A N V+ + K T
Sbjct: 281 GRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRV-------VLAELVRKVLRETFQRD 333
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D ++ DV HN+ E+ L +HRKG+T A G +LI G
Sbjct: 334 DSALLVDVPHNVVLQEQ--------GLNLHRKGATPA-------------RQGDLLLIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SY+ +G G + S HGAGR++ R R + + L +++R
Sbjct: 373 SMGDYSYIASGL--GHPDWLWSCSHGAGRSIRRQALRALKGPGD--SALPWHCVTLR--- 425
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +EEAP +YK V V+D G+ + +LRP K
Sbjct: 426 EERRIEEAPGAYKPVGPVIDAQERAGLIRPLARLRPWLTFK 466
>gi|261345237|ref|ZP_05972881.1| release factor H-coupled RctB family protein [Providencia
rustigianii DSM 4541]
gi|282566934|gb|EFB72469.1| release factor H-coupled RctB family protein [Providencia
rustigianii DSM 4541]
Length = 377
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 131/276 (47%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE Q VD+I ++ + G+ D ++ +++HSGSRG G + + + +++
Sbjct: 135 GNHFAEFQSVDKIVNQALFEQSGL-DKQKLLLLVHSGSRGLGQSI-------LRQHLEQH 186
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+ D Q A I N ++ A QF ++ +I +Q T+ + +
Sbjct: 187 SHNGLDEQSDDAEIYLNAHQD-ALQFA----QINRQLIGLRMMQQVKTSGEQR-----FS 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
++HN+ E +DG L HRKG+T P D V+I G+ G SY
Sbjct: 237 LNHNL--VEPCRIDGIDGWL--HRKGAT----------PSDRGF----VVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ + + S HGAGR R + + L ++ +L + RV A+ +L+
Sbjct: 279 LVAPIASDL--SLNSLAHGAGRKWMRTECKGRLSHRYTPLQLSRTALGSRVICANKQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP+SYK++ V+++ VGI + +L PV K
Sbjct: 337 EEAPQSYKSIETVIESMVNVGIIQVIARLAPVITYK 372
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 66 QWLSDNT--MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIH 123
+WL ++ S+++ S ++G GNH+AE Q VD+I ++ + G+ D ++ +++H
Sbjct: 110 EWLDEHVPEFMKSHVFMASLSSIGGGNHFAEFQSVDKIVNQALFEQSGL-DKQKLLLLVH 168
Query: 124 SGSRGFGHQV 133
SGSRG G +
Sbjct: 169 SGSRGLGQSI 178
>gi|432390709|ref|ZP_19633568.1| hypothetical protein WE9_01027 [Escherichia coli KTE21]
gi|430921987|gb|ELC42808.1| hypothetical protein WE9_01027 [Escherichia coli KTE21]
Length = 465
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 120/279 (43%), Gaps = 37/279 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL--VQMEKAM 193
+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V + + E
Sbjct: 221 SGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRRWMDRARAEWPT 279
Query: 194 KRDNIETNDRQLACARINSN-KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ LA + A ++ ++ A F+ + H
Sbjct: 280 GHKHPQSGLYGLAGGLAEEYLQAIGMAARYAWLNRVTIAEMVRVCLANLFHQD----NSH 335
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++ DV HNI E M +HRKG+T A G LI G+MG
Sbjct: 336 LVVDVPHNIILREHEMN--------IHRKGATPAR-------------VGDLALIPGSMG 374
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
S++ G G E S HGAGR+ R R + + + L Q +++R +
Sbjct: 375 DYSWLAVGC--GNPEWLWSCSHGAGRSQRRQAMRSSATEE---STLPWQCVTLR---EER 426
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EEAP +YK++ V++ G+ + + RP KG
Sbjct: 427 RLEEAPAAYKDIGPVIEAQQEAGLIQPAVRFRPWLTFKG 465
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 218 TPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYV 265
>gi|302553268|ref|ZP_07305610.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
gi|302470886|gb|EFL33979.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
Length = 397
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 166/399 (41%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S M+ + + +G G +
Sbjct: 27 LQQLQNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMQGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG--HQVATAG-----NHYAEIQIVDE 148
+ +++ + + IE V V +H G H TAG + I +
Sbjct: 86 LTANDLPGDLSRLRSRIEQVIPVGRGMHDDPVDPGRLHGFGTAGWEGFWGRFDGIAEAVK 145
Query: 149 IYDKWAASKMGI------------EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG + G V +M+HSGSR G ++A + +K
Sbjct: 146 FRQERATKQMGTLGSGNHFVEVCTDTTGSVWLMLHSGSRNIGKELAEHHIGIAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ + M ++ D K+F +
Sbjct: 206 GLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRSIMMALLKDVIRKEFKKAKPAFEPE 265
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + DG LLV RKG+ RA + +IP G+MG
Sbjct: 266 I--SAHHNYVAEERY--DGMD--LLVTRKGAIRAGSGDYGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G ++ F S HGAGR +SR ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNEKAFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKPIEQVIDQQR--DLVEVVAKLKQVVCVKG 397
>gi|402759691|ref|ZP_10861947.1| rtcb protein [Acinetobacter sp. NCTC 7422]
Length = 472
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 234 GNHFIEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 278
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 279 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIIPKPFQARL 338
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 339 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 377
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SRA+++R ++ + +++G+ R
Sbjct: 378 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRAEAKRRFTVEDQIA--QTEGVECR 431
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V++E P +YK + DV+ + + + LR V +KG
Sbjct: 432 KDAA--VIDEIPSAYKPIEDVMKAQQ--DLVEVIYTLRQVVCVKG 472
>gi|386617771|ref|YP_006137351.1| Putative RtcB Protein [Escherichia coli NA114]
gi|417660857|ref|ZP_12310438.1| RtcB-like protein [Escherichia coli AA86]
gi|432420392|ref|ZP_19662950.1| release factor H-coupled RctB family protein [Escherichia coli
KTE178]
gi|432498524|ref|ZP_19740304.1| release factor H-coupled RctB family protein [Escherichia coli
KTE216]
gi|432557299|ref|ZP_19793992.1| release factor H-coupled RctB family protein [Escherichia coli
KTE49]
gi|432693064|ref|ZP_19928279.1| release factor H-coupled RctB family protein [Escherichia coli
KTE162]
gi|432709113|ref|ZP_19944182.1| release factor H-coupled RctB family protein [Escherichia coli
KTE6]
gi|432917228|ref|ZP_20121882.1| release factor H-coupled RctB family protein [Escherichia coli
KTE173]
gi|432924506|ref|ZP_20126793.1| release factor H-coupled RctB family protein [Escherichia coli
KTE175]
gi|432979783|ref|ZP_20168564.1| release factor H-coupled RctB family protein [Escherichia coli
KTE211]
gi|433095138|ref|ZP_20281356.1| release factor H-coupled RctB family protein [Escherichia coli
KTE139]
gi|433104415|ref|ZP_20290438.1| release factor H-coupled RctB family protein [Escherichia coli
KTE148]
gi|330910075|gb|EGH38585.1| RtcB-like protein [Escherichia coli AA86]
gi|333968272|gb|AEG35077.1| Putative RtcB Protein [Escherichia coli NA114]
gi|430947557|gb|ELC67254.1| release factor H-coupled RctB family protein [Escherichia coli
KTE178]
gi|431032118|gb|ELD44829.1| release factor H-coupled RctB family protein [Escherichia coli
KTE216]
gi|431094352|gb|ELD99983.1| release factor H-coupled RctB family protein [Escherichia coli
KTE49]
gi|431237206|gb|ELF32206.1| release factor H-coupled RctB family protein [Escherichia coli
KTE162]
gi|431252834|gb|ELF46348.1| release factor H-coupled RctB family protein [Escherichia coli
KTE6]
gi|431447880|gb|ELH28600.1| release factor H-coupled RctB family protein [Escherichia coli
KTE173]
gi|431450147|gb|ELH30639.1| release factor H-coupled RctB family protein [Escherichia coli
KTE175]
gi|431496404|gb|ELH75987.1| release factor H-coupled RctB family protein [Escherichia coli
KTE211]
gi|431620016|gb|ELI88904.1| release factor H-coupled RctB family protein [Escherichia coli
KTE139]
gi|431634439|gb|ELJ02680.1| release factor H-coupled RctB family protein [Escherichia coli
KTE148]
Length = 379
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S + + + +G G +
Sbjct: 27 IQQLHTTANLPNMQ-RVVGMPDLH--PGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWHNSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
+D+I D ++ G+ D + +++HSGSRG G + + + A++
Sbjct: 144 IDQIIDAELFARAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 202 -IAEHDDALAFARINRQ-------------------LIALRIMQQVKATGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 279 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 372
>gi|331645439|ref|ZP_08346543.1| release factor H-coupled RctB family protein [Escherichia coli
M605]
gi|387828291|ref|YP_003348228.1| hypothetical protein ECSF_0238 [Escherichia coli SE15]
gi|281177448|dbj|BAI53778.1| conserved hypothetical protein [Escherichia coli SE15]
gi|331045601|gb|EGI17727.1| release factor H-coupled RctB family protein [Escherichia coli
M605]
Length = 383
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S + + + +G G +
Sbjct: 31 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQ 87
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 88 TDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWHNSLGSIGGGNHFAELQQ 147
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
+D+I D ++ G+ D + +++HSGSRG G + + + A++
Sbjct: 148 IDQIIDAELFARAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 205
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 206 -IAEHDDALAFARINRQ-------------------LIALRIMQQVKATGSP-----VLD 240
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 241 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 282
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 283 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 340
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 341 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 376
>gi|262281139|ref|ZP_06058921.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257370|gb|EEY76106.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 401
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE D W +M+HSGSRG G+ + T + +K +
Sbjct: 164 GNHFIEL-CIDENQDVW--------------IMLHSGSRGLGNVIGTYFIELAKKEAQHR 208
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNTTPD 247
D+ L+ S + A+++ M +I +A F T +
Sbjct: 209 FGHVPDKDLSYFAKGSKSFDDYVEAVEWAQEYAFENRKEMMRLILEAIRPLLPSFQMTKE 268
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H ++LL+ RKG+ RA +IP
Sbjct: 269 AINCH------HNYVSRETHF----GESLLITRKGAIRAGLDELGIIP------------ 306
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT SY++ G K E+F S HGAGR +SR+K++ + Q+++ ++QGI R
Sbjct: 307 -GSMGTRSYIVRG--KANPESFCSCSHGAGRKMSRSKAKTLFNQQDLIE--QTQGIECRK 361
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V++E P +YK++ +V+ + + + L+ V IKG
Sbjct: 362 DSG--VVDEIPSAYKDIDEVM--ANQADLIEVVHTLKQVLCIKG 401
>gi|161615516|ref|YP_001589481.1| hypothetical protein SPAB_03288 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161364880|gb|ABX68648.1| hypothetical protein SPAB_03288 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 379
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 161/389 (41%), Gaps = 56/389 (14%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYA 93
++Q+ A L G+ R +G+PD+H P + S + + + +G G
Sbjct: 26 AIQQLYTTAKLTGM-KRVIGMPDLH--PGRGYPIGAAFFSRGRFYPALVGNDIGCGMALW 82
Query: 94 EIQIVDEIY-----DKWAASKMGIEDVGQV-----CVMIHSGSRGFGHQVATAGNHYAEI 143
+ I+ Y +KW AS + D + M H R + GNH+AE+
Sbjct: 83 QTDILGRKYNADKLEKWLASLPDVADAQWLEENVPAAMQHHSWRSALGSIG-GGNHFAEL 141
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDR 203
Q VD I D + + G++ Q+ +++HSGSRG G + L + +A + + +
Sbjct: 142 QQVDRIVDADSFALSGLQKA-QLLLLVHSGSRGLGQAI----LRRHVEAFSHNGLPEDSD 196
Query: 204 QLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAK 263
+ AFA+ + +I +Q + DV+HN
Sbjct: 197 DARHYLAEHDDALAFARS--------NRALIARRILQQLRAEGEPR-----LDVAHNF-- 241
Query: 264 TEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK 323
E V GK L HRKG+T P L V+I G+ G S+++
Sbjct: 242 VEPCTVAGKAGWL--HRKGAT---PDGQGL-----------VIIPGSRGDYSWLVKPVVS 285
Query: 324 GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP--KLVMEEAPESY 381
+E+ S HGAGR R + + L + +L G+ RV +L+ EEAP++Y
Sbjct: 286 --EESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCRTGMGSRVICRDRQLIYEEAPQAY 343
Query: 382 KNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
K++ VVD G+ LRPV +K
Sbjct: 344 KSIDSVVDCLADAGLITPVACLRPVLTLK 372
>gi|420139570|ref|ZP_14647398.1| hypothetical protein PACIG1_2917 [Pseudomonas aeruginosa CIG1]
gi|421160167|ref|ZP_15619253.1| hypothetical protein PABE173_2853 [Pseudomonas aeruginosa ATCC
25324]
gi|403247661|gb|EJY61289.1| hypothetical protein PACIG1_2917 [Pseudomonas aeruginosa CIG1]
gi|404545187|gb|EKA54290.1| hypothetical protein PABE173_2853 [Pseudomonas aeruginosa ATCC
25324]
Length = 467
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V + + A R
Sbjct: 222 SGNHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVGQRWMDRARTAWPR 280
Query: 196 ------DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ +LA + + A N V+ + K T
Sbjct: 281 GRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRV-------VLAELVRKVLRETFQRD 333
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D ++ DV HN+ E+ L +HRKG+T A G +LI G
Sbjct: 334 DSALLVDVPHNVVLQEQ--------GLNLHRKGATPA-------------RQGDLLLIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SY+ +G G + S HGAGR++ R R + + L +++R
Sbjct: 373 SMGDYSYIASGL--GHPDWLWSCSHGAGRSIRRQALRALKGPGD--SALPWHCVTLR--- 425
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +EEAP +YK V V+D G+ + +LRP K
Sbjct: 426 EERRIEEAPGAYKPVGPVIDAQERAGLIRPLARLRPWLTFK 466
>gi|338733101|ref|YP_004671574.1| protein rtcB [Simkania negevensis Z]
gi|336482484|emb|CCB89083.1| protein rtcB [Simkania negevensis Z]
Length = 406
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/423 (23%), Positives = 178/423 (42%), Gaps = 90/423 (21%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAG------ 89
++Q+ NVA LP I G+PDVH S + + + + LG G
Sbjct: 27 AMQQLRNVAKLPFIFRHVAGMPDVHYGKGATVGSVIATKKAIVPAAVGVDLGCGMMAVQT 86
Query: 90 --------NHYAEIQIVDE---------------------IYDKWAASKMGIEDVGQVCV 120
+H I++ E + + +++ +ED + +
Sbjct: 87 SLRAEQLPDHLHAIRVAIEKAVPHGRTDNGGRNDRGAWGSLPNHLSSTWKKMEDRYKKII 146
Query: 121 MIH--SGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 176
H + S H + T GNH+ E M +++ V M+HSGSRG
Sbjct: 147 EKHPKAKSEKHAHHLGTLGTGNHFIE---------------MCLDEQNHVWFMLHSGSRG 191
Query: 177 FGHQVATDALVQMEKAMKRDNIETN--DRQLACARINSN------KNKAFAKQFNTTPDD 228
G+++ + + + ++ M+R I D+ LA ++ + +A+ + +
Sbjct: 192 PGNRIGSYFIEKAKREMERFYINEYLPDQDLAYLVEDTELFDDYVEAVLWAQDYASENRQ 251
Query: 229 LDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP 288
M A K P ++ V+ + HN E H + + V RKG+ RA
Sbjct: 252 EMMAATLKAVKKHL--APFEVTEMVV-NCHHNYVTKENHFGE----NVWVTRKGAVRA-- 302
Query: 289 PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRN 348
TG +I G+MGT S+++ G G +E+F S HGAGR +SRAK+++
Sbjct: 303 -----------RTGDLGIIPGSMGTGSFIVEGL--GNEESFCSCSHGAGRKMSRAKAKKT 349
Query: 349 LDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAV 408
+ + +K +GI R+ S +++E+P +YKN++ V+ + K ++LR +
Sbjct: 350 ISLSD--HKAAMKGIEARLDSE--ILDESPAAYKNISKVMKAQE--DLVKIKYRLRQIVN 403
Query: 409 IKG 411
+KG
Sbjct: 404 VKG 406
>gi|443625326|ref|ZP_21109774.1| hypothetical protein STVIR_3679 [Streptomyces viridochromogenes
Tue57]
gi|443341243|gb|ELS55437.1| hypothetical protein STVIR_3679 [Streptomyces viridochromogenes
Tue57]
Length = 397
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 166/399 (41%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S M+ + + +G G +
Sbjct: 27 LQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMQGAVCPAAVGVDIGCGMSAVKTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG--HQVATAG-----NHYAEIQIVDE 148
+ +++ + + IE V +H G H ATAG + I +
Sbjct: 86 LTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVDPGRLHGFATAGWDDFWGRFDGIADAVK 145
Query: 149 IYDKWAASKMGI------------EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG + G V +M+HSGSR G ++A + +K
Sbjct: 146 FRQERAGKQMGTLGSGNHFVEVCTDTTGSVWLMLHSGSRNIGKELAEHHIGVAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ + M ++ D K+F +
Sbjct: 206 GLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRTIMMALLKDVIRKEFKKAKPTFEPE 265
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + DG LLV RKG+ RA + +IP G+MG
Sbjct: 266 I--SAHHNYVAEERY--DGMD--LLVTRKGAIRAGSGEYGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G ++F S HGAGR +SR ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNAKSFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKPIEQVIDQQR--DLVEVVAKLKQVVCVKG 397
>gi|329936042|ref|ZP_08285842.1| hypothetical protein SGM_1334 [Streptomyces griseoaurantiacus M045]
gi|329304520|gb|EGG48398.1| hypothetical protein SGM_1334 [Streptomyces griseoaurantiacus M045]
Length = 401
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 164/399 (41%), Gaps = 56/399 (14%)
Query: 39 QIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIV 98
Q+ NVA LP I G +V +PDVH S MR + + +G G + +
Sbjct: 33 QLRNVATLPWIKGLAV-MPDVHFGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVKTSLT 91
Query: 99 -DEIYDKWAASKMGIEDVGQVCVMIHSG----SRGFGHQVATAG-----NHYAEIQIVDE 148
+++ + + IE V +H SR H +ATAG + + +
Sbjct: 92 ANDLPGDLSRLRSKIEQSIPVGRGMHEAPIDPSRF--HGLATAGWEGFWERFGGVAEAVK 149
Query: 149 IYDKWAASKMGI------------EDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ A +MG + G V +M+HSGSR G ++A + +K
Sbjct: 150 FRQERATKQMGTLGGGNHFVEVCTDSNGSVWLMLHSGSRNIGKELAEHHIGVAQKLAHNQ 209
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ L M ++ D K+F +
Sbjct: 210 GLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRTLMMALLKDVVRKEFKKARPTFEQE 269
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + + LLV RKG+ RA + +IP G+MG
Sbjct: 270 I--SCHHNYVAEERY----EGMDLLVTRKGAIRAGSGEYGIIP-------------GSMG 310
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G + F S HGAGR +SR ++R ++ LE Q +
Sbjct: 311 TGSYIVKGL--GNEAAFNSASHGAGRRMSRNAAKRRFSTKD----LEEQTRGVECRKDSG 364
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 365 VVDEIPGAYKPIEKVID--QQRDLVEVVAKLKQVVCVKG 401
>gi|107102171|ref|ZP_01366089.1| hypothetical protein PaerPA_01003221 [Pseudomonas aeruginosa PACS2]
gi|218891188|ref|YP_002440054.1| hypothetical protein PLES_24541 [Pseudomonas aeruginosa LESB58]
gi|254235632|ref|ZP_04928955.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|392983679|ref|YP_006482266.1| hypothetical protein PADK2_11405 [Pseudomonas aeruginosa DK2]
gi|419753160|ref|ZP_14279564.1| hypothetical protein CF510_09217 [Pseudomonas aeruginosa
PADK2_CF510]
gi|126167563|gb|EAZ53074.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218771413|emb|CAW27180.1| COG1690: Uncharacterized conserved protein [Pseudomonas aeruginosa
LESB58]
gi|384400282|gb|EIE46641.1| hypothetical protein CF510_09217 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392319184|gb|AFM64564.1| hypothetical protein PADK2_11405 [Pseudomonas aeruginosa DK2]
Length = 467
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V + + A R
Sbjct: 222 SGNHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVGQRWMDRARTAWPR 280
Query: 196 ------DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ +LA + + A N V+ + K T
Sbjct: 281 GRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRV-------VLAELVRKVLRETFQRD 333
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D ++ DV HN+ E+ L +HRKG+T A G +LI G
Sbjct: 334 DSALLVDVPHNVVLQEQ--------GLNLHRKGATPA-------------RQGDLLLIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SY+ +G G + S HGAGR++ R R + + L +++R
Sbjct: 373 SMGDYSYIASGL--GHPDWLWSCSHGAGRSIRRQALRALKGPGD--SALPWHCVTLR--- 425
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +EEAP +YK V V+D G+ + +LRP K
Sbjct: 426 EERRIEEAPGAYKPVGPVIDAQERAGLIRPLARLRPWLTFK 466
>gi|444917738|ref|ZP_21237826.1| Protein RtcB [Cystobacter fuscus DSM 2262]
gi|444710687|gb|ELW51662.1| Protein RtcB [Cystobacter fuscus DSM 2262]
Length = 474
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 123/279 (44%), Gaps = 35/279 (12%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA--MK 194
GNH+ E+Q V+ + D+ A + G+ + GQ+ M+HSGSR G V + A +
Sbjct: 225 GNHFVEVQRVEAVVDRARAWRWGVRE-GQLAFMVHSGSRDLGKHVGHTWQERARAAWPVG 283
Query: 195 RDNIETNDRQLACARINSN--KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
E+ LA + + +A A + L ++ + F D++
Sbjct: 284 APLPESGILPLADPALVREYLRAEATAANYAFLNRLLLAELLRLTLRELFG----DVEAP 339
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++YDV HNI E + RKG+ P + + QPV+I G+MG
Sbjct: 340 LVYDVPHNITLPWEGG--------WLARKGAC----------PAEEE---QPVIIPGSMG 378
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSR-AKSRRNLDYQEVLNKLESQGISIRVASPK 371
SY++ G G S HGAGRA SR + +R D +E L G+ +
Sbjct: 379 AESYLMVGL--GNARALASASHGAGRARSRFSMARGGADQRE--GALGLTGVDCITLRAE 434
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+EEAP +YK + VV + GI ++ ++RP+ K
Sbjct: 435 RRIEEAPAAYKPIGPVVASQVEAGIVREVARMRPLMTFK 473
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 67 WLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 126
W R + ++G GNH+ E+Q V+ + D+ A + G+ + GQ+ M+HSGS
Sbjct: 203 WAPTGLRREGVVRDPGLASIGGGNHFVEVQRVEAVVDRARAWRWGVRE-GQLAFMVHSGS 261
Query: 127 RGFGHQV 133
R G V
Sbjct: 262 RDLGKHV 268
>gi|432717762|ref|ZP_19952760.1| hypothetical protein WCK_01393 [Escherichia coli KTE9]
gi|431266381|gb|ELF57942.1| hypothetical protein WCK_01393 [Escherichia coli KTE9]
Length = 465
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 120/279 (43%), Gaps = 37/279 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL--VQMEKAM 193
+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V + + E
Sbjct: 221 SGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRRWMDRARAEWPT 279
Query: 194 KRDNIETNDRQLACARINSN-KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ LA + A ++ ++ A F+ + H
Sbjct: 280 GHKHPQSGLYGLAGGLAEEYLQAIGMAARYAWLNRVTIAEMVRVCLANLFHQD----NSH 335
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++ DV HNI E M +HRKG+T A G LI G+MG
Sbjct: 336 LVVDVPHNIILREHEMN--------IHRKGATPAR-------------VGDLALIPGSMG 374
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
S++ G G E S HGAGR+ R R + + + L Q +++R +
Sbjct: 375 DYSWLAVGC--GNPEWLWSCSHGAGRSQRRQAMRSSATEE---STLPWQCVTLR---EER 426
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+EEAP +YK++ V++ G+ + + RP KG
Sbjct: 427 RLEEAPAAYKDIGPVIEAQQEAGLIQPAVRFRPWLTFKG 465
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 218 TPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYV 265
>gi|293408389|ref|ZP_06652228.1| release factor H-coupled RctB family protein [Escherichia coli
B354]
gi|291471567|gb|EFF14050.1| release factor H-coupled RctB family protein [Escherichia coli
B354]
Length = 379
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 160/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 27 IQQLHTTANLPNMQ-RVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VDEI D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 VDEIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q + D
Sbjct: 202 -IAEHDDALAFARINR-------------------QLIALRIMQQVKAMGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACR---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + + +L + RV +L+
Sbjct: 279 LVEPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTVTQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLLQAGLIIPVARLRPVLTLK 372
>gi|433196861|ref|ZP_20380793.1| release factor H-coupled RctB family protein [Escherichia coli
KTE94]
gi|431726010|gb|ELJ89838.1| release factor H-coupled RctB family protein [Escherichia coli
KTE94]
Length = 383
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 31 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 87
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 88 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 147
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VD+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 148 VDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGCDDALR-- 204
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q + D
Sbjct: 205 YIAEHDDALAFARINRQ-------------------MIALRIMQQVKAMGSP-----VLD 240
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 241 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 282
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLVM 374
++ ++T S HGAGR R + + L + + +L + RV +L+
Sbjct: 283 IVQPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTVTQLSRTELGSRVICRDKQLIF 340
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 341 EEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLK 376
>gi|386058387|ref|YP_005974909.1| hypothetical protein PAM18_2324 [Pseudomonas aeruginosa M18]
gi|347304693|gb|AEO74807.1| hypothetical protein PAM18_2324 [Pseudomonas aeruginosa M18]
Length = 467
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V + + A R
Sbjct: 222 SGNHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVGQRWMDRARTAWPR 280
Query: 196 ------DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ +LA + + A N V+ + K T
Sbjct: 281 GRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRV-------VLAELVRKVLRETFQRD 333
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
D ++ DV HN+ E+ L +HRKG+T A G +LI G
Sbjct: 334 DSALLVDVPHNVVLQEQ--------GLNLHRKGATPA-------------RQGDLLLIPG 372
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MG SY+ +G G + S HGAGR++ R R + + L +++R
Sbjct: 373 SMGDYSYIASGL--GHPDWLWSCSHGAGRSIRRQALRALKGPGD--SALPWHCVTLR--- 425
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +EEAP +YK V V+D G+ + +LRP K
Sbjct: 426 EERRIEEAPGAYKPVGPVIDAQERAGLIRPLARLRPWLTFK 466
>gi|374369165|ref|ZP_09627202.1| hypothetical protein OR16_26188 [Cupriavidus basilensis OR16]
gi|373099315|gb|EHP40399.1| hypothetical protein OR16_26188 [Cupriavidus basilensis OR16]
Length = 270
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 121/287 (42%), Gaps = 42/287 (14%)
Query: 128 GFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDA 185
G H + T GNH+AE+Q +DEI D+ A + +G+E ++ +++HSGSRG G + D
Sbjct: 15 GHEHALGTIGGGNHFAEVQQIDEILDQAAVAALGLERR-RLVLLVHSGSRGLGQAILQDH 73
Query: 186 LVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
+ + DN + Q + + A A +F +L + D
Sbjct: 74 IERFG-----DNGLSGGSQDGADYLARH---AQALRFAQGNRELVARRMLDRLHGGGERA 125
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
DV HN +DG L HRKG+T P D PV
Sbjct: 126 ---------LDVDHNFLAAA--TIDGIAGWL--HRKGAT----------PAD----ADPV 158
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
+I G G SY++ + S HGAGR R + + L + + +L
Sbjct: 159 VIPGLRGDYSYLVEPVADA--RSLLSLAHGAGRKWMRGECKSRLSGRFTVEQLSRTRFDS 216
Query: 366 RVA--SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
RV +L+ EEAP++YK + VV G+++ +LRPV K
Sbjct: 217 RVICRDRQLIYEEAPQAYKPIGSVVAALCDAGLARPLARLRPVLTYK 263
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T+G GNH+AE+Q +DEI D+ A + +G+E ++ +++HSGSRG G +
Sbjct: 22 TIGGGNHFAEVQQIDEILDQAAVAALGLERR-RLVLLVHSGSRGLGQAI 69
>gi|257056324|ref|YP_003134156.1| hypothetical protein Svir_23210 [Saccharomonospora viridis DSM
43017]
gi|256586196|gb|ACU97329.1| uncharacterized conserved protein [Saccharomonospora viridis DSM
43017]
Length = 398
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 169/391 (43%), Gaps = 80/391 (20%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NV LP I G +V +PDVH S +R + + +G G
Sbjct: 28 LRQLHNVTTLPWIHGVAV-MPDVHYGKGATVGSVIALRDAVSPAAVGVDIGCGMSAVRTS 86
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIH---------SGSRGFG---------------- 130
+ ++ D + IED V +H +G G+G
Sbjct: 87 LTASDLPDDLGPLRKRIEDAVPVGFDMHDRPVDVARVTGVGGWGEFWSRFSSLHPGVQKL 146
Query: 131 -----HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
Q+ T GNH+ E+ + + G ED G+V +M+HSGSRG G+++A
Sbjct: 147 RERAHRQLGTLGGGNHFIEVCL-----------EQGGEDDGRVWLMLHSGSRGIGNELAK 195
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA 237
+++ K++ N + DR LA + + +A+ A+++ + ++ A
Sbjct: 196 RH-IEIAKSLPH-NADLPDRDLAVFVTGTPEMEAYRNDLYWAQEYAARNRATMLALVKKA 253
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
A + D + HN E + DG L+V RKG+ RA +IP
Sbjct: 254 LADEVPGVRFDEPI----SCHHNYVAEERY--DGVD--LMVTRKGAIRAAKGDLGIIP-- 303
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
G+MGT SY++ G G + +F S HGAGR +SRAK+RR+ ++
Sbjct: 304 -----------GSMGTGSYIVRGL--GNEASFQSASHGAGRRMSRAKARRSFTAADLAE- 349
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVV 388
+++G+ R + V++E P +YK++ V+
Sbjct: 350 -QTRGVECRKDAG--VVDEIPGAYKDIDSVI 377
>gi|162455438|ref|YP_001617805.1| rtcb protein [Sorangium cellulosum So ce56]
gi|161166020|emb|CAN97325.1| rtcb protein [Sorangium cellulosum So ce56]
Length = 408
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 47/281 (16%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ + +E +V VM+HSGSRG G++V + + ++ M+R
Sbjct: 169 GNHFIELCLDEE---------------DRVWVMLHSGSRGVGNRVGSYFIELAKQEMRRF 213
Query: 197 NIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
I D LA + + ++A+ F +L M + +A P D
Sbjct: 214 FINLPDADLAYLPDGTRHFHDYMQAVSWAQDFAAVNRELMMAQVVEALRGSGELPPFDAT 273
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
+ + + HN E H K +LV RKG+ RA G +I G+
Sbjct: 274 VEAV-NCHHNYVAREHHY----GKDVLVTRKGAVRA-------------QAGDLGIIPGS 315
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
MG S+++ G G E+F S+ HGAGR +SR ++RR + ++ + G+ R
Sbjct: 316 MGARSFIVRGL--GNPESFCSSSHGAGRVMSRGEARRRFSVAD--HEAATAGVECR--KD 369
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+ V++E P +YK + DV+ + + LR V +KG
Sbjct: 370 EDVIDETPAAYKPIDDVMRAQK--DLVEIVHTLRQVVCVKG 408
>gi|167044279|gb|ABZ08958.1| hypothetical protein ALOHA_HF4000APKG6B14ctg1g1, partial
[uncultured marine crenarchaeote HF4000_APKG6B14]
Length = 81
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
ST HGAGR +SR+K+RRN EV+ L +GI I+ + V+EE P++YK+V VV+
Sbjct: 1 STAHGAGRMMSRSKARRNFSESEVIKSLNDKGIFIKSLTRDGVVEETPQAYKDVDAVVNV 60
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
H +GI+ K KL P+ VIKG
Sbjct: 61 SHELGIATKVAKLVPMGVIKG 81
>gi|345873041|ref|ZP_08824962.1| protein of unknown function UPF0027 [Thiorhodococcus drewsii AZ1]
gi|343917619|gb|EGV28411.1| protein of unknown function UPF0027 [Thiorhodococcus drewsii AZ1]
Length = 391
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 58/387 (14%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
+KQ+ NVA LP I +PDVH S + I + +G G + +
Sbjct: 26 MKQLENVAHLPFIHSHVAAMPDVHWGMGATIGSVIPTLGAIIPAAVGVDIGCGMNALRLS 85
Query: 97 I-VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVD-EIYDKWA 154
+ D++ D A + IE V + H +A I +I +W
Sbjct: 86 LRADQLPDSLAKVRSAIEARVPVGMDGHGQEHWCDKGLARVAPGLEPILAKHPKINARWQ 145
Query: 155 AS-----------KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDR 203
+ ++ +++ QV +M+HSGSRG G+++ + + ++ M+R I+ D+
Sbjct: 146 SQLGSLGGGNHFIELCLDESQQVWIMLHSGSRGIGNRIGMHFIERAKREMERWKIQLPDQ 205
Query: 204 QLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQ---FNTTPDDLDMHVI 254
LA S + +A+ + M +I +A Q F T + ++ H
Sbjct: 206 NLAYLPEGSQHFDDYVEAVGWAQDYAMENRRQMMRLIIEALRGQLPPFEATSEAINCH-- 263
Query: 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
HN E H K + + RKG+ RA +IP G+MG
Sbjct: 264 ----HNYVTREHHF----GKEVYLTRKGAIRAREGDLGIIP-------------GSMGAK 302
Query: 315 SYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVM 374
SY++ G M +F S HGAGR +SR ++ R + ++ LE+Q + K V+
Sbjct: 303 SYIVRGLGNPM--SFCSCSHGAGRRMSRGEATRRFNRKD----LEAQTQGVECRKDKGVI 356
Query: 375 EEAPESYKNV-------TDVVDTCHAV 394
+E P +YK++ +D+V+ H +
Sbjct: 357 DEIPAAYKDIDAVMANQSDLVEVVHTL 383
>gi|338529911|ref|YP_004663245.1| hypothetical protein LILAB_01175 [Myxococcus fulvus HW-1]
gi|337256007|gb|AEI62167.1| hypothetical protein LILAB_01175 [Myxococcus fulvus HW-1]
Length = 474
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 121/279 (43%), Gaps = 35/279 (12%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKA--MK 194
GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSGSR G V + +A +
Sbjct: 225 GNHFVEVQRVEAVEDRARAWGWGVRE-GQLAFMIHSGSRDVGKHVGVAWQDRARQAWPVG 283
Query: 195 RDNIETNDRQLACARINSN--KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
E+ L AR+ + +A A + L ++ + F D++
Sbjct: 284 APLPESGILPLGDARLVEQYLEAEATAANYAFLNRLLLAELLRQTLRELFG----DVEAP 339
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++YDV HN+ E + RKG+ P + QPV+I G+MG
Sbjct: 340 LVYDVPHNLTLPYEGG--------WLARKGAC----------PAGAE---QPVIIPGSMG 378
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSR-AKSRRNLDYQEVLNKLESQGISIRVASPK 371
S+++ G G S HGAGRA SR + SR D E L G+ +
Sbjct: 379 ATSFLMVGC--GDARALESASHGAGRARSRFSLSRGGADQSEA--ALGLAGVDCITLRAE 434
Query: 372 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+EEAP +YK + VVD GI ++ +L P+ K
Sbjct: 435 RRVEEAPAAYKPIRPVVDAQVEAGIVREVARLAPLLTFK 473
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 66 QWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 125
+W ++ R + T+G GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSG
Sbjct: 202 RWAPESFTREGLVRDAGLATIGGGNHFVEVQRVEAVEDRARAWGWGVRE-GQLAFMIHSG 260
Query: 126 SRGFGHQVATA 136
SR G V A
Sbjct: 261 SRDVGKHVGVA 271
>gi|456352645|dbj|BAM87090.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 379
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 120/288 (41%), Gaps = 62/288 (21%)
Query: 137 GNHYAEIQIVDEIYD-KWAASKMGIEDVGQVCVMIHSGSRGFGHQV----ATDALVQM-- 189
GNH+ E+Q V+E++D W D + +++HSGSRG GHQ+ A D L +
Sbjct: 135 GNHFCELQAVEEVFDPSWGL------DRDRAHLLVHSGSRGLGHQLLERQAADGLRPLTP 188
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ + + +D L A +N + A++ T A + P
Sbjct: 189 DSEAGQAYLAAHDHALRWASLN---RRIIARRAAT--------------ALRCEADP--- 228
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + SHN EH DG ++HRKG+ P D L V++ G
Sbjct: 229 ----VCECSHNCV---EHRADG-----VLHRKGAA----------PADQGL----VVVPG 262
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV-LNKLESQGISIRVA 368
+ G SY++ QE S HGAGR R + + +L RV
Sbjct: 263 SRGALSYLVAPLATAPQEALSSIAHGAGRKFDRGSMMGRVGATKSDRERLARNPFGGRVI 322
Query: 369 SP--KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYL 414
L++EEAPE+YK + V+ A G+++ RP+ +K I +
Sbjct: 323 CEDRALLVEEAPEAYKPIGGVIADLEAFGLARVVASFRPLVTVKKIAV 370
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 7/50 (14%)
Query: 85 TLGAGNHYAEIQIVDEIYD-KWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T+G GNH+ E+Q V+E++D W D + +++HSGSRG GHQ+
Sbjct: 131 TIGGGNHFCELQAVEEVFDPSWGL------DRDRAHLLVHSGSRGLGHQL 174
>gi|357412775|ref|YP_004924511.1| hypothetical protein Sfla_3574 [Streptomyces flavogriseus ATCC
33331]
gi|320010144|gb|ADW04994.1| protein of unknown function UPF0027 [Streptomyces flavogriseus ATCC
33331]
Length = 397
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 31/256 (12%)
Query: 160 IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACA---RINSNKNK 216
+++ G V +M+HSGSR G ++A + Q +K + D + A ++ + +N
Sbjct: 169 LDEAGSVWLMLHSGSRNIGKELADFHIGQAQKLPHNQGLVDRDLAVFVADTPQMAAYRND 228
Query: 217 AF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 275
F A+++ + M + D K+F + + HN E + DG
Sbjct: 229 LFWAQEYAKYNRSIMMGLFQDVVRKEFKKA--RVTFEPVISCHHNYVSEERY--DGMD-- 282
Query: 276 LLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHG 335
LLV RKG+ RA +IP G+MGT SY++ G G ++F S HG
Sbjct: 283 LLVTRKGAIRAGSGEFGIIP-------------GSMGTGSYIVKGL--GNAKSFNSASHG 327
Query: 336 AGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVG 395
AGR +SR ++R Q+ LE Q + V++E P +YK + V+D
Sbjct: 328 AGRRMSRNAAKRRFSTQD----LEEQTRGVECRKDSGVVDEIPAAYKPIEQVID--QQRD 381
Query: 396 ISKKTFKLRPVAVIKG 411
+ + KL+ + +KG
Sbjct: 382 LVEVVAKLKQLVCVKG 397
>gi|302559204|ref|ZP_07311546.1| RtcB [Streptomyces griseoflavus Tu4000]
gi|302476822|gb|EFL39915.1| RtcB [Streptomyces griseoflavus Tu4000]
Length = 397
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 158/378 (41%), Gaps = 52/378 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G
Sbjct: 27 LQQLRNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVRTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSGSRG---FGHQVATAG-----NHYAEIQIVD 147
+ +++ + + IE V +H F H AT G + +
Sbjct: 86 LTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVDPFRF-HAFATGGWDGFWERFGGVADAV 144
Query: 148 EIYDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+ ++ A +MG ++DVG V + +HSGSR G ++A + +K
Sbjct: 145 KFREERATKQMGTLGGGNHYIELLLDDVGSVWLTLHSGSRNIGKELAEHHIGIAQKLPHN 204
Query: 196 DNIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDM 251
+ D + A ++ + +N F A+++ + M ++ + K+F +
Sbjct: 205 QGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKYNRSIMMALLKNVIRKEFKKAGPTFEP 264
Query: 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTM 311
+ HN E + + LLV RKG+ RA + +IP G+M
Sbjct: 265 EI--SCHHNYVAEERY----EGMDLLVTRKGAIRAGAGEYGIIP-------------GSM 305
Query: 312 GTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPK 371
GT SY++ G G ++ F S HGAGR +SR ++R ++ LE Q +
Sbjct: 306 GTSSYIVKGL--GSEKAFNSASHGAGRRMSRNAAKRRFTVRD----LEQQTSGVECRKDS 359
Query: 372 LVMEEAPESYKNVTDVVD 389
V++E P +YKN+ V++
Sbjct: 360 GVLDEIPGAYKNIDQVME 377
>gi|417289249|ref|ZP_12076534.1| hypothetical protein ECTW07793_0821 [Escherichia coli TW07793]
gi|425298891|ref|ZP_18688940.1| tRNA-splicing ligase RtcB [Escherichia coli 07798]
gi|386248041|gb|EII94214.1| hypothetical protein ECTW07793_0821 [Escherichia coli TW07793]
gi|408221307|gb|EKI45261.1| tRNA-splicing ligase RtcB [Escherichia coli 07798]
Length = 465
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 37/279 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL--VQMEKAM 193
+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V + + E
Sbjct: 221 SGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRRWMDRARAEWPT 279
Query: 194 KRDNIETNDRQLACARINSN-KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ LA + A ++ ++ A F+ + H
Sbjct: 280 GHKHPQSGLYGLAGGLAEEYLQAIGMAARYAWLNRVTIAEMVRVCLANLFHQD----NSH 335
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++ DV HNI E M +HRKG+T A G LI G+MG
Sbjct: 336 LVVDVPHNIILREHEMN--------IHRKGATPA-------------RVGNLALIPGSMG 374
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
S++ G G E S HGAGR+ R ++ R+ +E + L Q +++R +
Sbjct: 375 DYSWLAVGC--GNPEWLWSCSHGAGRS-QRRQAMRSRATEE--STLPWQCVTLR---EER 426
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK++ V++ G+ + + RP KG
Sbjct: 427 RFEEAPAAYKDIGPVIEAQQEAGLIQPAVRFRPWLTFKG 465
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 218 TPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYV 265
>gi|260907287|ref|ZP_05915609.1| hypothetical protein BlinB_18268 [Brevibacterium linens BL2]
Length = 389
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 45/286 (15%)
Query: 131 HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQ 188
HQ+ + +GNH+ E+ + ++ +V + +HSGSRG G+++AT +
Sbjct: 143 HQLGSLGSGNHFIEVSVDED---------------DRVWMFLHSGSRGIGNKIATHHIKV 187
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAFAKQFNTTP 246
+ K+ I+ D LA + + A+ Q L+ + D A+Q + T
Sbjct: 188 AVQLNKKWWIDLPDPDLAYLVEGTPEFSAYISQLKWAQHFALLNREEMMDRVARQLSETM 247
Query: 247 DDLDMHV-IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
+ + + HN ++E+H KT+ V RKG+ A G+P
Sbjct: 248 GETVVEAERINCHHNFTQSEKHF----NKTVWVSRKGAIEAD-------------AGRPG 290
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
LI G+MGT SYV+ G KG + S+ HGAGR SR +R+ + ++L + I
Sbjct: 291 LIPGSMGTASYVVEG--KGDPVSLNSSPHGAGRQYSRTAARKTFSH----DQLREAMVGI 344
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++E P++YK + V+ A+ + T LR + +KG
Sbjct: 345 EYRDTDAFIDEIPQAYKPIDQVMADASALVEIRHT--LRQLVNVKG 388
>gi|253689800|ref|YP_003018990.1| release factor H-coupled RctB family protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756378|gb|ACT14454.1| release factor H-coupled RctB family protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 373
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 119/280 (42%), Gaps = 48/280 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q +D IY A + I D Q+ +++HSGSRG G +
Sbjct: 130 GNHFAELQQLDGIYQPDALHALHI-DPKQLLLLVHSGSRGLGQTI--------------- 173
Query: 197 NIETNDRQLACARINSNKNKAFA----KQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+E + R+ + +N A A QF T + +I +++T D
Sbjct: 174 -LEAHVREFGHQGLEANTPAAEAYLEQHQFALTFATHNRRLIAQRMLDRWHTEGD----- 227
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
DV+HN+ ++G L HRKG+T P D PV+I G+ G
Sbjct: 228 AALDVNHNLVTPT--TIEGISGWL--HRKGAT----------PADCG----PVIIPGSRG 269
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP-- 370
SY++ ++ S HGAGR R + + L + + +L RV
Sbjct: 270 DYSYIVQPIPHA--DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQDR 327
Query: 371 KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAPE+YK + V+ G+ +L+PV K
Sbjct: 328 QLIFQEAPEAYKPIDSVIGAMQQAGLITLIARLKPVLTYK 367
>gi|312965163|ref|ZP_07779400.1| uncharacterized family UPF0027 family protein [Escherichia coli
2362-75]
gi|417754485|ref|ZP_12402580.1| hypothetical protein ECDEC2B_0795 [Escherichia coli DEC2B]
gi|418995734|ref|ZP_13543347.1| hypothetical protein ECDEC1A_0727 [Escherichia coli DEC1A]
gi|419000875|ref|ZP_13548434.1| hypothetical protein ECDEC1B_0779 [Escherichia coli DEC1B]
gi|419006389|ref|ZP_13553845.1| hypothetical protein ECDEC1C_0690 [Escherichia coli DEC1C]
gi|419012252|ref|ZP_13559617.1| tRNA-splicing ligase RtcB [Escherichia coli DEC1D]
gi|419017159|ref|ZP_13564485.1| hypothetical protein ECDEC1E_0857 [Escherichia coli DEC1E]
gi|419022849|ref|ZP_13570091.1| tRNA-splicing ligase RtcB [Escherichia coli DEC2A]
gi|419027659|ref|ZP_13574858.1| hypothetical protein ECDEC2C_0703 [Escherichia coli DEC2C]
gi|419033162|ref|ZP_13580260.1| hypothetical protein ECDEC2D_0815 [Escherichia coli DEC2D]
gi|419038438|ref|ZP_13585497.1| hypothetical protein ECDEC2E_0749 [Escherichia coli DEC2E]
gi|312290254|gb|EFR18137.1| uncharacterized family UPF0027 family protein [Escherichia coli
2362-75]
gi|377848612|gb|EHU13594.1| hypothetical protein ECDEC1A_0727 [Escherichia coli DEC1A]
gi|377851190|gb|EHU16145.1| hypothetical protein ECDEC1C_0690 [Escherichia coli DEC1C]
gi|377853522|gb|EHU18421.1| hypothetical protein ECDEC1B_0779 [Escherichia coli DEC1B]
gi|377863017|gb|EHU27824.1| tRNA-splicing ligase RtcB [Escherichia coli DEC1D]
gi|377867133|gb|EHU31897.1| hypothetical protein ECDEC1E_0857 [Escherichia coli DEC1E]
gi|377868487|gb|EHU33231.1| tRNA-splicing ligase RtcB [Escherichia coli DEC2A]
gi|377879431|gb|EHU44004.1| hypothetical protein ECDEC2B_0795 [Escherichia coli DEC2B]
gi|377883581|gb|EHU48099.1| hypothetical protein ECDEC2D_0815 [Escherichia coli DEC2D]
gi|377885542|gb|EHU50037.1| hypothetical protein ECDEC2C_0703 [Escherichia coli DEC2C]
gi|377898039|gb|EHU62402.1| hypothetical protein ECDEC2E_0749 [Escherichia coli DEC2E]
Length = 465
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 37/279 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL--VQMEKAM 193
+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V + + E
Sbjct: 221 SGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRRWMDRARAEWPT 279
Query: 194 KRDNIETNDRQLACARINSN-KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ LA + A ++ ++ A F+ + H
Sbjct: 280 GHKHPQSGLYGLAGGLAEEYLQAIGMAARYAWLNRVTIAEMVRVCLANLFHQD----NSH 335
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++ DV HNI E M +HRKG+T A G LI G+MG
Sbjct: 336 LVVDVPHNIILREHEMN--------IHRKGATPA-------------RVGNLALIPGSMG 374
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
S++ G G E S HGAGR+ R ++ R+ +E + L Q +++R +
Sbjct: 375 DYSWLAVGC--GNPEWLWSCSHGAGRS-QRRQAMRSRATEE--STLPWQCVTLR---EER 426
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK++ V++ G+ + + RP KG
Sbjct: 427 RFEEAPAAYKDIGPVIEAQQEAGLIQPAVRFRPWLTFKG 465
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 218 TPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYV 265
>gi|355650807|ref|ZP_09056273.1| release factor H-coupled RctB family protein [Pseudomonas sp.
2_1_26]
gi|416877901|ref|ZP_11920040.1| hypothetical protein PA15_18209 [Pseudomonas aeruginosa 152504]
gi|334839025|gb|EGM17723.1| hypothetical protein PA15_18209 [Pseudomonas aeruginosa 152504]
gi|354826561|gb|EHF10772.1| release factor H-coupled RctB family protein [Pseudomonas sp.
2_1_26]
Length = 379
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D ++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DADRLQLLVHSGSRGLGQAILQEHVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LA A A +F L I + D L++ D
Sbjct: 194 GSLEASAYLA--------RHADALRFAEGNRQLIARRILERL------RCDGLEL---LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + VDG L HRKG+T P D + ++I G+ G SY
Sbjct: 237 VNHNLVALAQ--VDGVDGWL--HRKGAT----------PADQGV----LVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 279 LVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D ++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DADRLQLLVHSGSRGLGQAI 178
>gi|416337774|ref|ZP_11674088.1| Protein RtcB [Escherichia coli WV_060327]
gi|320194110|gb|EFW68742.1| Protein RtcB [Escherichia coli WV_060327]
Length = 465
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 37/279 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDAL--VQMEKAM 193
+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V + + E
Sbjct: 221 SGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRRWMDRTRAEWPT 279
Query: 194 KRDNIETNDRQLACARINSN-KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ ++ LA + A ++ ++ A F+ + H
Sbjct: 280 GHKHPQSGLYGLAGGLAEEYLQAIGMAARYAWLNRVTIAEMVRVCLANLFHQD----NSH 335
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
++ DV HNI E M +HRKG+T A G LI G+MG
Sbjct: 336 LVVDVPHNIILREHEMN--------IHRKGATPA-------------RVGNLALIPGSMG 374
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
S++ G G E S HGAGR+ R ++ R+ +E + L Q +++R +
Sbjct: 375 DYSWLAVGC--GNPEWLWSCSHGAGRS-QRRQAMRSRATEE--STLPWQCVTLR---EER 426
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK++ V++ G+ + + RP KG
Sbjct: 427 RFEEAPAAYKDIGPVIEAQQEAGLIQPAVRFRPWLTFKG 465
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 218 TPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYV 265
>gi|254975742|ref|ZP_05272214.1| hypothetical protein CdifQC_10544 [Clostridium difficile QCD-66c26]
gi|255093129|ref|ZP_05322607.1| hypothetical protein CdifC_10814 [Clostridium difficile CIP 107932]
gi|255314871|ref|ZP_05356454.1| hypothetical protein CdifQCD-7_11002 [Clostridium difficile
QCD-76w55]
gi|255517545|ref|ZP_05385221.1| hypothetical protein CdifQCD-_10586 [Clostridium difficile
QCD-97b34]
gi|255650656|ref|ZP_05397558.1| hypothetical protein CdifQCD_10766 [Clostridium difficile
QCD-37x79]
gi|260683746|ref|YP_003215031.1| hypothetical protein CD196_2010 [Clostridium difficile CD196]
gi|260687406|ref|YP_003218540.1| hypothetical protein CDR20291_2053 [Clostridium difficile R20291]
gi|306520584|ref|ZP_07406931.1| hypothetical protein CdifQ_12431 [Clostridium difficile QCD-32g58]
gi|384361375|ref|YP_006199227.1| hypothetical protein CDBI1_10405 [Clostridium difficile BI1]
gi|260209909|emb|CBA63857.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260213423|emb|CBE05077.1| conserved hypothetical protein [Clostridium difficile R20291]
Length = 355
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 170/395 (43%), Gaps = 80/395 (20%)
Query: 38 KQIANVAALPGIVGRSVGLPDVHS--VPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
KQ+ +++ L GI+ R VGLPD+H+ +P + + +I +G G +
Sbjct: 20 KQLEDISKLNGIL-RVVGLPDLHTGKIPVGLAVETKNIIYPHIIGND---IGCGMTLFKT 75
Query: 96 QIVDEIYDKWAA--SKMGIEDVGQV---------CVMIHSGSRGFGHQVATAGNHYAEIQ 144
++ + + K S I+D+ + C +++ G+ G +GNH+ EIQ
Sbjct: 76 GVLKKKFKKDKWIKSLSKIKDLSDIEIKNTYKEECPILNLGTIG-------SGNHFVEIQ 128
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT-----DAL-VQMEKAMKRDNI 198
+ EIY+K ++ + +++H GSR +G + D L V+ EKA+ D I
Sbjct: 129 CISEIYNKEQFEQLKFSS-DDIMMLVHCGSRNYGEDILKKFYDKDGLEVESEKAI--DYI 185
Query: 199 ETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
+ +D L A N +A +K K + D+ I+ ++
Sbjct: 186 KKHDNALMWAERN---REAISK-------------------KIMQSIGTSEDVETIFSIN 223
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HN + K++ +HRKG+ + V+I G+ G+ SY++
Sbjct: 224 HNFIE--------KREDKFIHRKGAVSS--------------ERGAVIIPGSRGSLSYIV 261
Query: 319 TGTEKGMQETFGSTCHGAGRALSRA--KSRRNLDYQEVLNKLESQGISIRVASPKLVMEE 376
TE + + S HGAGR SR+ KSR Y + K I L+ +E
Sbjct: 262 MPTE-NTEISLYSLSHGAGRKWSRSVCKSRLKSKYSKDTIKQTKFKSQIICNDVNLLFQE 320
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
APE+YKN+ ++++ + + ++P+ KG
Sbjct: 321 APEAYKNIEQIIESLIEYELIQVVATMKPLITYKG 355
>gi|116053621|ref|YP_793948.1| hypothetical protein PA14_72210 [Pseudomonas aeruginosa UCBPP-PA14]
gi|421177735|ref|ZP_15635381.1| hypothetical protein PACI27_5954 [Pseudomonas aeruginosa CI27]
gi|115588842|gb|ABJ14857.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|404528925|gb|EKA38983.1| hypothetical protein PACI27_5954 [Pseudomonas aeruginosa CI27]
Length = 379
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 40/276 (14%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+AE+Q V+ ++D+ A +G+ D ++ +++HSGSRG G + + + A D
Sbjct: 135 GNHFAELQQVETVFDQAALHALGL-DADRLQLLVHSGSRGLGQAILQEHVSLHGHAGLLD 193
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
LA A A +F L I + D L++ D
Sbjct: 194 GSLEASAYLA--------RHADALRFAEGNRQLIARRILERL------RCDGLEL---LD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN+ + VDG L HRKG+T P D + ++I G+ G SY
Sbjct: 237 VNHNLVAPAQ--VDGVDGWL--HRKGAT----------PADQGV----LVIPGSRGDYSY 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVM 374
++ ++ S HGAGR R + R L + +++L + RV +L+
Sbjct: 279 LVEPVPSA--QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIY 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAPE+YK + VV G+ + +L+PV K
Sbjct: 337 EEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK 372
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 81 RSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
R+ T+G GNH+AE+Q V+ ++D+ A +G+ D ++ +++HSGSRG G +
Sbjct: 127 RALGTIGGGNHFAELQQVETVFDQAALHALGL-DADRLQLLVHSGSRGLGQAI 178
>gi|386841705|ref|YP_006246763.1| hypothetical protein SHJG_5623 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102006|gb|AEY90890.1| hypothetical protein SHJG_5623 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451794998|gb|AGF65047.1| hypothetical protein SHJGH_5384 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 397
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 162/380 (42%), Gaps = 56/380 (14%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G
Sbjct: 27 LRQLQNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVRTS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSG--SRGFGHQVATAG--NHYAEIQIVDEI-- 149
+ +++ + + IE V V +H G H +ATAG + + + V E
Sbjct: 86 LTANDLPGDLSRLRSRIEQVIPVGRGMHQDPVEPGDFHGLATAGWEDFWGRFEGVAEAVK 145
Query: 150 --YDKWAASKMGIEDVG----QVC--------VMIHSGSRGFGHQVATDALVQMEKAMKR 195
+D+ A +MG G +VC + +HSGSR G ++A + +K
Sbjct: 146 FRHDR-AEKQMGTLGSGNHYLEVCLDQSDSVWLTLHSGSRNIGKELAEHHIGVAQKLPH- 203
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
N + DR LA ++ + A+ A+++ L M ++ D K+F
Sbjct: 204 -NQDLVDRDLAVFVSDTPQMAAYRHDLFWAQEYAKYNRTLMMALLKDVIRKEFKKAKPTF 262
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + HN E + + LLV RKG+ RA +IP G
Sbjct: 263 EPEI--SCHHNYVAEERY----EGMDLLVTRKGAIRAGSGEFGIIP-------------G 303
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY++ G G ++ F S HGAGR +SR ++R ++ LE Q +
Sbjct: 304 SMGTSSYIVKGL--GNEKAFNSASHGAGRRMSRNAAKRRFTTKD----LEEQTRGVECRK 357
Query: 370 PKLVMEEAPESYKNVTDVVD 389
V++E P +YKN+ V++
Sbjct: 358 DSGVLDEIPGAYKNIDQVME 377
>gi|445434559|ref|ZP_21440172.1| protein RtcB [Acinetobacter baumannii OIFC021]
gi|444756541|gb|ELW81086.1| protein RtcB [Acinetobacter baumannii OIFC021]
Length = 401
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 127/284 (44%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE D W VM+HSGSRG G+ + T + +K +
Sbjct: 164 GNHFIEL-CIDENQDVW--------------VMLHSGSRGLGNVIGTYFIELAKKEAQHR 208
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNTTPD 247
D+ L+ SN + A+++ M +I +A F T +
Sbjct: 209 FGHVPDKDLSYFAEGSNSFNDYVEAVEWAQEYAFENRKEMMRLILEAIRPLLPSFQMTKE 268
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H + LLV RKG+ RA +IP
Sbjct: 269 AINCH------HNYVSRETHF----GENLLVTRKGAIRAGLNELGIIP------------ 306
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG SY++ G K E+F S HGAGR +SR+K++ + Q+++ ++QGI R
Sbjct: 307 -GSMGARSYIVRG--KANPESFCSCSHGAGRKMSRSKAKILFNQQDLIE--QTQGIECRK 361
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V++E P +YK++ +V+ + + + L+ V IKG
Sbjct: 362 DSG--VVDEIPSAYKDIDEVM--ANQSDLIEVVHTLKQVLCIKG 401
>gi|421664216|ref|ZP_16104356.1| protein RtcB [Acinetobacter baumannii OIFC110]
gi|421697431|ref|ZP_16136994.1| protein RtcB [Acinetobacter baumannii WC-692]
gi|404558192|gb|EKA63476.1| protein RtcB [Acinetobacter baumannii WC-692]
gi|408712513|gb|EKL57696.1| protein RtcB [Acinetobacter baumannii OIFC110]
Length = 422
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI + + Y V +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEICLDEHDY---------------VWIMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKAVATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE F S HGAGR +SR +++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQEAFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
>gi|329848553|ref|ZP_08263581.1| uncharacterized protein family UPF0027 family protein
[Asticcacaulis biprosthecum C19]
gi|328843616|gb|EGF93185.1| uncharacterized protein family UPF0027 family protein
[Asticcacaulis biprosthecum C19]
Length = 397
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 164/402 (40%), Gaps = 81/402 (20%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHS-----VPSTQWLSDNT---MRSSNI------WKRS 82
+ Q+ A L G+ G+ VGLPD+H+ V + W D + S+I W+ S
Sbjct: 45 LDQLDATARLDGM-GKVVGLPDLHAGNGIAVGAAFWSPDRIWPHLVGSDIGCGMALWQTS 103
Query: 83 -PL-TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHY 140
P+ G +Q +D+ +D + + + M+ G G GNH+
Sbjct: 104 LPVRKFRVGQVDRRLQGLDDPWDGPVEDALAAAGLPRELGMLSLGGPSLG--TIGGGNHF 161
Query: 141 AEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK------ 194
E Q ++E+ D + + ++ +V +M+HSGSRG G + + QM+ K
Sbjct: 162 VEFQRIEEVVDPQRFAALNAQE-DRVWMMVHSGSRGLGQAILS---AQMDLTGKSGLPAA 217
Query: 195 ----RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
R + +D+ +A A +N + A++F N L
Sbjct: 218 TPEARAYLTRHDQAVAWAVVN---RRIIAERF-------------------LNAV--GLS 253
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
D++HN DG +HRKG+ P D L V+I G+
Sbjct: 254 GECRLDITHNSVTAYR---DG-----WLHRKGAA----------PADCGL----VVIPGS 291
Query: 311 MGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASP 370
G SY+ + + S HGAGR SR + L + + L+ +S V
Sbjct: 292 RGDFSYLAEPVAEQAEVALSSLAHGAGRKWSRNDAHARLSRRYKVADLQKTRLSSHVICE 351
Query: 371 --KLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ EEAPE+YK++ V+ A G+ + +LRP+ K
Sbjct: 352 DRRLIFEEAPEAYKDIAGVIGDLEAAGLIRVIARLRPLLSYK 393
>gi|319935092|ref|ZP_08009533.1| hypothetical protein HMPREF9488_00364 [Coprobacillus sp. 29_1]
gi|319809987|gb|EFW06364.1| hypothetical protein HMPREF9488_00364 [Coprobacillus sp. 29_1]
Length = 338
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 160/383 (41%), Gaps = 70/383 (18%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
+ Q+ N+A+ G+ + GLPD+H P + I+ P +G +I
Sbjct: 17 AIHQLENIASFEGVYDIA-GLPDLH--PGKTPIGATICSQHRIY---PFLIGN-----DI 65
Query: 96 QIVDEIYD-KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWA 154
++D KM I+ V + + G GNH+AEIQ++D+IY++
Sbjct: 66 GCGMSLFDTNIKLKKMHIDKVLKRL----EHTNLVGKYSIGGGNHFAEIQLIDKIYNQEF 121
Query: 155 ASKMGIEDVGQVCVMIHSGSRGFGHQV-----ATDALVQMEKAMKRDNIETNDRQLACAR 209
A+ + +E V ++IHSGSR G ++ + L++ + ++ N L
Sbjct: 122 ANHLSLEK-SHVYLLIHSGSRTMGEEIYRQYSSIHGLIEGTEEFYNYLLKHNSAVL---- 176
Query: 210 INSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 269
+AK+ + M +I+ + Q + D +HN + ++
Sbjct: 177 --------YAKENRQEVANDFMKLIHIQYKNQ-----------LCIDCTHNYLE----II 213
Query: 270 DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETF 329
DG H KGS A L + +I G+ G+ SY++ + +T
Sbjct: 214 DGN----YYHHKGSVSA-------------LENEYAIIAGSRGSYSYIVKCIPQS--DTL 254
Query: 330 GSTCHGAGRALSRA--KSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDV 387
S HGAGR +R+ K R Y++ K G ++ L+ EEA E+YKN+ DV
Sbjct: 255 FSISHGAGRKWARSLCKGRLENKYKKDELKKSKLGSTVVTHHKSLLYEEATEAYKNIDDV 314
Query: 388 VDTCHAVGISKKTFKLRPVAVIK 410
++T + +L+P+ K
Sbjct: 315 INTLLEYQCIELVVRLKPMVTYK 337
>gi|302535090|ref|ZP_07287432.1| RtcB protein [Streptomyces sp. C]
gi|302443985|gb|EFL15801.1| RtcB protein [Streptomyces sp. C]
Length = 397
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 50/282 (17%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
AGNH++E+ I E G V + +HSGSRG G+Q+A + + + + +
Sbjct: 160 AGNHHSEVNIDQE---------------GAVWLTLHSGSRGIGNQLA-EHHIGIARGLAH 203
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
N DR LA + + A+ A+++ + M ++ +A K+F
Sbjct: 204 -NQGLIDRDLAVFLAATPEMAAYRHDLYWAQEYAKYNRAVMMSLMKEALRKEFRKAKVSF 262
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + HN E + DG LLV RKG+ RA +IP G
Sbjct: 263 EQEI--SCHHNYVAEERY--DGVD--LLVTRKGAIRAGGGEFGIIP-------------G 303
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+M T +Y++ G G Q F S HGAGR +SRA ++R ++++ +++G+ R S
Sbjct: 304 SMATGTYIVKGL--GNQAAFNSASHGAGRRMSRAAAKRRYSTRDLVE--QTRGVECRKDS 359
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V++ + + KLR V IKG
Sbjct: 360 G--VVDEIPAAYKPIEQVMEQQR--DLVEVVAKLRQVVCIKG 397
>gi|293609559|ref|ZP_06691861.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427423269|ref|ZP_18913428.1| protein RtcB [Acinetobacter baumannii WC-136]
gi|292828011|gb|EFF86374.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425699914|gb|EKU69512.1| protein RtcB [Acinetobacter baumannii WC-136]
Length = 422
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SR +++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
>gi|299769380|ref|YP_003731406.1| rtcb protein [Acinetobacter oleivorans DR1]
gi|298699468|gb|ADI90033.1| rtcb protein [Acinetobacter oleivorans DR1]
Length = 422
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SR +++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
>gi|416334113|ref|ZP_11671132.1| hypothetical protein EcoM_00478 [Escherichia coli WV_060327]
gi|432439588|ref|ZP_19681951.1| release factor H-coupled RctB family protein [Escherichia coli
KTE189]
gi|432444712|ref|ZP_19687021.1| release factor H-coupled RctB family protein [Escherichia coli
KTE191]
gi|433012432|ref|ZP_20200817.1| release factor H-coupled RctB family protein [Escherichia coli
KTE104]
gi|433021976|ref|ZP_20210006.1| release factor H-coupled RctB family protein [Escherichia coli
KTE106]
gi|433325957|ref|ZP_20402925.1| hypothetical protein B185_019043 [Escherichia coli J96]
gi|320197282|gb|EFW71898.1| hypothetical protein EcoM_00478 [Escherichia coli WV_060327]
gi|430969398|gb|ELC86502.1| release factor H-coupled RctB family protein [Escherichia coli
KTE189]
gi|430976087|gb|ELC92962.1| release factor H-coupled RctB family protein [Escherichia coli
KTE191]
gi|431536264|gb|ELI12593.1| release factor H-coupled RctB family protein [Escherichia coli
KTE104]
gi|431541302|gb|ELI16742.1| release factor H-coupled RctB family protein [Escherichia coli
KTE106]
gi|432345769|gb|ELL40262.1| hypothetical protein B185_019043 [Escherichia coli J96]
Length = 379
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 161/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + + S + + + +G G +
Sbjct: 27 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAALFSVGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWRNSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
+D+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 IDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 202 -IAEHDDALAFARINR-------------------QLIALRIMQQVKATGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 279 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 372
>gi|299768853|ref|YP_003730879.1| hypothetical protein AOLE_03025 [Acinetobacter oleivorans DR1]
gi|298698941|gb|ADI89506.1| hypothetical protein AOLE_03025 [Acinetobacter oleivorans DR1]
Length = 401
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE D W VM+HSGSRG G+ + T + +K +
Sbjct: 164 GNHFIEL-CIDENQDVW--------------VMLHSGSRGLGNVIGTYFIELAKKEAQHR 208
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNTTPD 247
D+ L+ SN + A+++ M +I +A F T +
Sbjct: 209 FGHVPDKDLSYFAEGSNSFDDYVEAVEWAQEYAFENRKEMMRLILEAIRPLLPSFQMTKE 268
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H ++LL+ RKG+ R +IP
Sbjct: 269 AINCH------HNYVSRETHF----GESLLITRKGAIRVGLDELGIIP------------ 306
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG SY++ G K E+F S HGAGR +SR+K++ + Q+++ ++QGI R
Sbjct: 307 -GSMGARSYIVRG--KANPESFCSCSHGAGRKMSRSKAKTLFNQQDLIE--QTQGIECRK 361
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V++E P +YK++ +V+ + + + L+ V IKG
Sbjct: 362 DSG--VVDEIPSAYKDIDEVM--ANQADLIEIVHTLKQVLCIKG 401
>gi|255101282|ref|ZP_05330259.1| hypothetical protein CdifQCD-6_10784 [Clostridium difficile
QCD-63q42]
gi|423088599|ref|ZP_17076978.1| release factor H-coupled RctB family protein [Clostridium difficile
70-100-2010]
gi|357559485|gb|EHJ40933.1| release factor H-coupled RctB family protein [Clostridium difficile
70-100-2010]
Length = 355
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 170/395 (43%), Gaps = 80/395 (20%)
Query: 38 KQIANVAALPGIVGRSVGLPDVHS--VPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
KQ+ +++ L GI+ R VGLPD+H+ +P + + +I +G G +
Sbjct: 20 KQLEDISKLNGIL-RVVGLPDLHAGKIPVGLAVETKNIIYPHIIGND---IGCGMTLFKT 75
Query: 96 QIVDEIYDKWAA--SKMGIEDVGQV---------CVMIHSGSRGFGHQVATAGNHYAEIQ 144
++ + + K S I+D+ + C +++ G+ G +GNH+ EIQ
Sbjct: 76 GVLKKKFKKDKWIKSLSKIKDLSDIEIKNTYKEECPILNLGTIG-------SGNHFVEIQ 128
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT-----DAL-VQMEKAMKRDNI 198
+ EIY+K ++ + +++H GSR +G + D L V+ EKA+ D I
Sbjct: 129 CISEIYNKEQFEQLKFSS-DDIMMLVHCGSRNYGEDILKKFYDKDGLEVESEKAI--DYI 185
Query: 199 ETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
+ +D L A N +A +K K + D+ I+ ++
Sbjct: 186 KKHDNALMWAERN---REAISK-------------------KIMQSIGTSGDVETIFSIN 223
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HN + K++ +HRKG+ + V+I G+ G+ SY++
Sbjct: 224 HNFVE--------KREDKFIHRKGAVSS--------------ERGAVIIPGSRGSLSYIV 261
Query: 319 TGTEKGMQETFGSTCHGAGRALSRA--KSRRNLDYQEVLNKLESQGISIRVASPKLVMEE 376
TE + + S HGAGR SR+ KSR Y + K I L+ +E
Sbjct: 262 MPTE-NTEISLYSLSHGAGRKWSRSVCKSRLKSKYSKDTIKQTKFKSQIICNDVNLLFQE 320
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
APE+YKN+ ++++ + + ++P+ KG
Sbjct: 321 APEAYKNIEQIIESLIEYELIQVVATMKPLITYKG 355
>gi|399052727|ref|ZP_10741998.1| hypothetical protein PMI08_03559 [Brevibacillus sp. CF112]
gi|398049349|gb|EJL41774.1| hypothetical protein PMI08_03559 [Brevibacillus sp. CF112]
Length = 393
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 124 SGSRGFGHQVAT--AGNHYAEIQIVDEIYD-KWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
S R +G Q+ T GNH+ EIQ ++ D + A + G+ D GQV +MIHSGSR +G
Sbjct: 188 SWQRAWG-QLGTLGGGNHFIEIQSLEIAEDNREIAQEWGLFD-GQVVIMIHSGSRAWGAM 245
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAF 238
+ D ++AM + IE + L A I++ + K + + + ++ H+I A
Sbjct: 246 LGRDYTKSFKEAMFKWGIENPEPSLVYAPIDTEEGKRYLNLMYSALNYAVVNRHLIGYAV 305
Query: 239 AKQF-NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
+ F + D V+YD+ HN A E H + +LVHRKG+T+A P H P
Sbjct: 306 ERAFRDVLGKDFSTPVLYDLMHNYALQEYH----RNTPMLVHRKGATKALPAGHFQNPKA 361
Query: 298 YQLTGQPV--LIGGTMGTC 314
Y+ Q + ++G + T
Sbjct: 362 YKDVDQIIDSVVGAKLATV 380
>gi|384246800|gb|EIE20289.1| UPF0027-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 435
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 145/333 (43%), Gaps = 67/333 (20%)
Query: 96 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAA 155
+ +D+I +K A SK E + V+ G+ G GNH+ E+ +YD
Sbjct: 154 ETIDDISNKRAPSKFVEESMSAPKVLKQLGTLG-------GGNHFLEV-----VYD---- 197
Query: 156 SKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN 215
+ G+V +M+HSGSR G+ AT ++ +++ I T L I+S +
Sbjct: 198 ------ETGRVWIMLHSGSRNIGNITATHYDKMAKEGLQQRGI-TTPHNLNYLEIDSEEG 250
Query: 216 KAFAKQF----------NTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 265
+ + + + DL + ++ D T + + ++ HN + E
Sbjct: 251 QQYLQDMLWCQEYAWHNRSFMRDLMIDIVED-------VTKGSVSLDESVNIHHNFCQCE 303
Query: 266 E-HMVDGKQKT-----LLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLT 319
+ D + L + RKG+T A P GQ LI G+MGT SYV
Sbjct: 304 RCNYTDPRSGAKISADLYITRKGATPAAP-------------GQMGLIPGSMGTGSYVTR 350
Query: 320 GTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPE 379
G +G +++ S HGAGR +SR +++ + + +E V V +EAP+
Sbjct: 351 G--RGNPQSWSSCSHGAGRRMSRTAAKKVISQADFQKAMEGIVCDTNVK----VRDEAPQ 404
Query: 380 SYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412
+YKN+ +V+ + + + +LRP+ +KG
Sbjct: 405 AYKNLNEVMK--NQSDLVEVVTRLRPLVNVKGF 435
>gi|374365564|ref|ZP_09623652.1| hypothetical protein OR16_05859 [Cupriavidus basilensis OR16]
gi|373102856|gb|EHP43889.1| hypothetical protein OR16_05859 [Cupriavidus basilensis OR16]
Length = 408
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 137/332 (41%), Gaps = 70/332 (21%)
Query: 97 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAAS 156
+ D + WAA G E + + + + GNH+ E+ +DE W
Sbjct: 130 VPDAVDASWAALAGGFERITRKYPKLERTNNRNHLGTLGTGNHFIEV-CLDESQSVW--- 185
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
M+HSGSRG G+ + + + M+R I DR LA S +
Sbjct: 186 -----------FMLHSGSRGVGNAIGNTFIELAQADMRRHFINLPDRDLAYLVEGSAHYE 234
Query: 217 AF------AKQFNTTPDDLDMHVIYDA----FAKQFNTTPDDLDMHVIYDVSHNIAKTEE 266
+ A+Q+ + M + DA K F T + ++ H HN + E
Sbjct: 235 DYVFAVEWAQQYARRNRETMMANVLDAARAVIGKPFATAMEAVNCH------HNYVQKER 288
Query: 267 HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQ 326
H + +LV RKG+ A +IP G+MG SY++ G KG
Sbjct: 289 HF----GEDVLVTRKGAVSAKAGELGIIP-------------GSMGARSYIVRG--KGNA 329
Query: 327 ETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNV-- 384
E+F S HGAGR +SR++++R + + +QG+ R + V++E P +YK++
Sbjct: 330 ESFCSCSHGAGRTMSRSEAKRRFSVDD--QRRATQGVECRKDAE--VIDEIPMAYKDIDA 385
Query: 385 -----TDVVDTCHAVGISKKTFKLRPVAVIKG 411
+D+V+ H L+ V +KG
Sbjct: 386 VMAAQSDLVEVVHT---------LKQVVCVKG 408
>gi|169607623|ref|XP_001797231.1| hypothetical protein SNOG_06870 [Phaeosphaeria nodorum SN15]
gi|111064401|gb|EAT85521.1| hypothetical protein SNOG_06870 [Phaeosphaeria nodorum SN15]
Length = 532
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 188/431 (43%), Gaps = 100/431 (23%)
Query: 36 GVKQIANVA-ALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLT---LGAGNH 91
V Q++ A LPGIV +VG PD+H P ++ + +S W PL +G G
Sbjct: 121 AVTQLSTTAHTLPGIV-HAVGQPDLH--PGSK-FPIGAVIASKGWVHPPLIGGDIGCGMA 176
Query: 92 YAEIQI----VDEIYDKWAASKM-GIEDVGQVCVMIH----------SGSRGFGHQVAT- 135
+ + + VD K A K+ G+E G H S S G +A
Sbjct: 177 WFKTTLPRSQVDGDKGKKVAEKLRGLE--GPWRTQAHREAWMHEEDGSCSTGEEWDIALG 234
Query: 136 ---AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV----ATDALVQ 188
AGNH+AEIQ+V+E A K+ +++ V +++HSGSRG+G V TDA V
Sbjct: 235 TIGAGNHFAEIQVVEESSLS-ADDKLSLQE-NDVVLLVHSGSRGYGGSVLKKHTTDAHVS 292
Query: 189 MEKAMKRDNIETNDRQLACARINSNKNKAFAKQF--------------NTTPDDLDMHVI 234
++ + AC +N++ A +F +++ +D+ + V
Sbjct: 293 FQEDSPEAIEYIKEHDKACQWAKANRD-LIALRFLSCLEPGNEAWDLGSSSSEDVRVDVA 351
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHN-------------------IAKTEEHMVDGK--Q 273
++A++ L + D+ HN A + + DGK Q
Sbjct: 352 AISYARK------QLQQRKVVDIWHNNVERVKWPPSPPSTSSDLADAASNLSLSDGKASQ 405
Query: 274 KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL-----TGTEKGMQET 328
+ +HRKG A P ++P +L P G+ GT + +L T T G++
Sbjct: 406 DHVWIHRKG---AAPTYNPETQQPLELLPLP----GSRGTPTLILKPTFSTRTSWGLKNA 458
Query: 329 FGSTCHGAGRALSRAKSRRNLDYQ-EVLNKLE-----SQGISIRVASPKLVMEEAPESYK 382
S HGAGRA++R K+ +L + + +N LE S+G + LV EEAPE+YK
Sbjct: 459 L-SLAHGAGRAMTRTKALTSLGAKYKGINILEPRAGDSEGTWVVCDEKDLVFEEAPEAYK 517
Query: 383 NV----TDVVD 389
+V D+VD
Sbjct: 518 DVELVGQDLVD 528
>gi|432396110|ref|ZP_19638902.1| release factor H-coupled RctB family protein [Escherichia coli
KTE25]
gi|432721856|ref|ZP_19956784.1| release factor H-coupled RctB family protein [Escherichia coli
KTE17]
gi|432740035|ref|ZP_19974757.1| release factor H-coupled RctB family protein [Escherichia coli
KTE23]
gi|432989347|ref|ZP_20178017.1| release factor H-coupled RctB family protein [Escherichia coli
KTE217]
gi|433109436|ref|ZP_20295318.1| release factor H-coupled RctB family protein [Escherichia coli
KTE150]
gi|430918492|gb|ELC39493.1| release factor H-coupled RctB family protein [Escherichia coli
KTE25]
gi|431268601|gb|ELF60070.1| release factor H-coupled RctB family protein [Escherichia coli
KTE17]
gi|431286164|gb|ELF76990.1| release factor H-coupled RctB family protein [Escherichia coli
KTE23]
gi|431498592|gb|ELH77777.1| release factor H-coupled RctB family protein [Escherichia coli
KTE217]
gi|431632442|gb|ELJ00730.1| release factor H-coupled RctB family protein [Escherichia coli
KTE150]
Length = 379
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 120/285 (42%), Gaps = 58/285 (20%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM------- 189
GNH+AE+Q +D+I D ++ G+ D + +++HSGSRG G + +
Sbjct: 135 GNHFAELQQIDQIIDAELFARAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPE 193
Query: 190 --EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPD 247
+ A++ I +D LA ARIN +I +Q T
Sbjct: 194 GSDDALRY--IAEHDDALAFARINRQ-------------------LIALRIMQQVKATGS 232
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ DV+HN + G Q L HRKG+T P D L V+I
Sbjct: 233 P-----VLDVAHNFVTASQ---IGDQHGWL-HRKGAT----------PDDNGL----VII 269
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+ G S+++ ++T S HGAGR R + + L + +L + RV
Sbjct: 270 PGSRGDYSWLVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRV 327
Query: 368 A--SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ EEAP++YK+ VV G+ +LRPV +K
Sbjct: 328 ICRDKQLIFEEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 372
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 56 LPDVHSVPSTQWLSDN--TMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIE 113
L D+ V WL +N + + + W S ++G GNH+AE+Q +D+I D ++ G+
Sbjct: 100 LSDLDYVAEESWLEENLPSAFAQHPWHNSLGSIGGGNHFAELQQIDQIIDAELFARAGL- 158
Query: 114 DVGQVCVMIHSGSRGFGHQV 133
D + +++HSGSRG G +
Sbjct: 159 DAQHLQLLVHSGSRGLGQSI 178
>gi|445494165|ref|ZP_21461209.1| protein RtcB [Janthinobacterium sp. HH01]
gi|444790326|gb|ELX11873.1| protein RtcB [Janthinobacterium sp. HH01]
Length = 411
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 54/263 (20%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EI +++ G V M+HSGSRG G+ + T + +K M+
Sbjct: 172 SGNHFIEI---------------CLDEAGAVWFMLHSGSRGVGNAIGTYFIELAKKDMRT 216
Query: 196 DNIETNDRQLA-CARINSNKNK-----AFAKQFNTTPDDLDMHVIYDA----FAKQFNTT 245
I D+ LA A + N +A++F T ++ MH + A AK F T
Sbjct: 217 HFINLPDQDLAYLAEGTQHYNDYIEAVGWAQKFARTNREVMMHNLIAAVRTVIAKPFETH 276
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
+ ++ H HN + E H K +L+ RKG+ A G+
Sbjct: 277 VEAVNCH------HNYVQQERHF----GKDVLITRKGAVSA-------------REGELG 313
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
+I G+MG S+++ G +G E+F S HGAGR +SR +++R + + E G+
Sbjct: 314 IIPGSMGAKSFIVRG--RGNPESFNSCSHGAGRTMSRTEAKRRFTLADQVKATE--GVEC 369
Query: 366 RVASPKLVMEEAPESYKNVTDVV 388
R + V++E P +YK++ V+
Sbjct: 370 RKDAN--VIDEIPMAYKDIDAVM 390
>gi|445448030|ref|ZP_21443835.1| protein RtcB [Acinetobacter baumannii WC-A-92]
gi|444758213|gb|ELW82714.1| protein RtcB [Acinetobacter baumannii WC-A-92]
Length = 422
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE F S HGAGR +SR +++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQEAFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
>gi|408678889|ref|YP_006878716.1| hypothetical protein SVEN_3171 [Streptomyces venezuelae ATCC 10712]
gi|328883218|emb|CCA56457.1| hypothetical protein SVEN_3171 [Streptomyces venezuelae ATCC 10712]
Length = 397
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 169/399 (42%), Gaps = 52/399 (13%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQ 96
++Q+ NVA LP I G +V +PDVH S MR + + +G G +
Sbjct: 27 MQQLQNVATLPWIKGLAV-MPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVKSS 85
Query: 97 IV-DEIYDKWAASKMGIEDVGQVCVMIHSG----SRGFGHQVATAGNHYAEIQIVDE--- 148
+ +++ + + IE V +H +R + + G+ ++ V +
Sbjct: 86 LTANDLPGDLSRLRSKIEQAIPVGRGLHRTEVDPARLYQFPTSGWGDFWSRFDGVADAVK 145
Query: 149 IYDKWAASKMG------------IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
+ AA +MG +++ G V +M+HSGSR G ++A + + +K
Sbjct: 146 FRRERAAQQMGTLGGGNHFIEFCLDESGSVWLMLHSGSRNIGKELAEHHIGEAQKLPHNQ 205
Query: 197 NIETNDRQLACA---RINSNKNKAF-AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMH 252
+ D + A ++ + +N F A+++ + M + + ++F D
Sbjct: 206 GLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNRAIMMALFQEVVRREFRKARVTFDQ- 264
Query: 253 VIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMG 312
+ HN E + + LLV RKG+ RA +IP G+MG
Sbjct: 265 -VISCHHNYVAEERY----EGMDLLVTRKGAIRAGSGEFGIIP-------------GSMG 306
Query: 313 TCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKL 372
T SY++ G G + +F S HGAGR +SR+ ++R ++ LE Q +
Sbjct: 307 TGSYIVKGL--GNEASFNSASHGAGRKMSRSAAKRRFSTRD----LEEQTRGVECRKDSG 360
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + V+D + + KL+ V +KG
Sbjct: 361 VVDEIPGAYKPIEKVID--QQRDLVEVVAKLKQVICVKG 397
>gi|419699178|ref|ZP_14226800.1| hypothetical protein OQA_01462 [Escherichia coli SCI-07]
gi|432731005|ref|ZP_19965844.1| release factor H-coupled RctB family protein [Escherichia coli
KTE45]
gi|432758065|ref|ZP_19992588.1| release factor H-coupled RctB family protein [Escherichia coli
KTE46]
gi|380349700|gb|EIA37966.1| hypothetical protein OQA_01462 [Escherichia coli SCI-07]
gi|431278409|gb|ELF69399.1| release factor H-coupled RctB family protein [Escherichia coli
KTE45]
gi|431311851|gb|ELF99998.1| release factor H-coupled RctB family protein [Escherichia coli
KTE46]
Length = 379
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 160/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S + + + +G G +
Sbjct: 27 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VD+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 VDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 202 -IAEHDDALAFARINR-------------------QLIALRIMQQVKATGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACQ---IGDQQGWL-HRKGTT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 279 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 372
>gi|422378511|ref|ZP_16458718.1| release factor H-coupled RctB family protein [Escherichia coli MS
57-2]
gi|324010205|gb|EGB79424.1| release factor H-coupled RctB family protein [Escherichia coli MS
57-2]
Length = 383
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 160/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S + + + +G G +
Sbjct: 31 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQ 87
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 88 TDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 147
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VD+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 148 VDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGESILQRHIASFSHHGLPEGSDDALRY- 205
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 206 -IAEHDDALAFARINR-------------------QLIALRIMQQVKATGSP-----VLD 240
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 241 VAHNFVSACQ---IGDQQGWL-HRKGTT----------PDDNGL----VIIPGSRGDYSW 282
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 283 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 340
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 341 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 376
>gi|317491072|ref|ZP_07949508.1| release factor H-coupled RctB family protein [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920619|gb|EFV41942.1| release factor H-coupled RctB family protein [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 370
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 129/278 (46%), Gaps = 48/278 (17%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM-EKAMKR 195
GNH+AE +DEI+ ++A D ++ +++HSGSRG G + + + +++
Sbjct: 131 GNHFAEFLQIDEIFTPFSAL-----DKKRLILLVHSGSRGLGQAILEAHIREYGHHGLEQ 185
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIY 255
D+ E+ D +N +++ A F + H I ++ T D +
Sbjct: 186 DSPESGDY------LNQHQH---ALDFAVC----NRHFIARRIMERLRT-----DGQQLL 227
Query: 256 DVSHN-IAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
D++HN + KT + +DG +HRKG+T P D L V+I G+ G
Sbjct: 228 DIAHNFLQKTSVNGIDG-----WLHRKGAT----------PSDRGL----VVIPGSRGDF 268
Query: 315 SYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKL 372
SY++ E+ S HGAGR R++ + L + ++++ RV +L
Sbjct: 269 SYLVEPHPDA--ESLFSLAHGAGRKWMRSECKDRLSAKFTVDQMSRTHFGSRVICRDRQL 326
Query: 373 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +EAP++YK + +VD+ G+ +L+PV K
Sbjct: 327 IYQEAPQAYKPIDTIVDSLQQAGLITVVARLKPVLTYK 364
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA 136
T+G GNH+AE +DEI+ ++A D ++ +++HSGSRG G + A
Sbjct: 127 TIGGGNHFAEFLQIDEIFTPFSAL-----DKKRLILLVHSGSRGLGQAILEA 173
>gi|421654067|ref|ZP_16094398.1| protein RtcB [Acinetobacter baumannii Naval-72]
gi|408511917|gb|EKK13564.1| protein RtcB [Acinetobacter baumannii Naval-72]
Length = 422
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE F S HGAGR +SR +++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQEAFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
>gi|307943085|ref|ZP_07658430.1| release factor H-coupled RctB family protein [Roseibium sp.
TrichSKD4]
gi|307773881|gb|EFO33097.1| release factor H-coupled RctB family protein [Roseibium sp.
TrichSKD4]
Length = 395
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 66/286 (23%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+Q+VD++ + S + GQ+ +++HSGSR G +V D
Sbjct: 140 GNHFCELQVVDDVAENEQTSDL---RKGQLVLLVHSGSRSLGPEVF-------------D 183
Query: 197 NIETNDRQLACARINSNKNKAFAKQF------NTTPDDLDMHVIYDAFAKQFNTTPDDLD 250
++ D L +N A A Q+ L+ +I + A + D
Sbjct: 184 TVQAYDHGL-------EQNSALATQYLEQHAQAVVWASLNRRIIAERAAHALKS-----D 231
Query: 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGT 310
+ I DV HN+A+ + + L+HRKG+ RA D LT + G+
Sbjct: 232 IVPIADVPHNLAE--------RYRDCLLHRKGAARA----------DLGLTP----LAGS 269
Query: 311 MGTCSYVL--TGTEKGMQETFGSTCHGAGRALSRA----KSRRNLDYQEVLNKLESQGIS 364
T SYV+ TG G + S HG+GR R+ ++ + +E L + S G
Sbjct: 270 RNTLSYVVRPTGRHPG---SLLSLAHGSGRKYDRSSMTGRAGKTKSDREALKRNASGGFI 326
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
I +L++EEAP++YK+ V+D + G+ + L+P+ K
Sbjct: 327 I-CEDRQLLIEEAPQAYKSSQHVLDELVSFGLVTRVASLKPLLTYK 371
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
T+G GNH+ E+Q+VD++ + S + GQ+ +++HSGSR G +V
Sbjct: 136 TIGGGNHFCELQVVDDVAENEQTSDL---RKGQLVLLVHSGSRSLGPEV 181
>gi|432405140|ref|ZP_19647863.1| release factor H-coupled RctB family protein [Escherichia coli
KTE28]
gi|430932636|gb|ELC53055.1| release factor H-coupled RctB family protein [Escherichia coli
KTE28]
Length = 379
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 160/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S + + + +G G +
Sbjct: 27 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VD+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 VDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q T + D
Sbjct: 202 -IAEHDDALAFARINR-------------------QLIALRIMQQVKATGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSACQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 279 LVKPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLK 372
>gi|422021075|ref|ZP_16367589.1| hypothetical protein OO7_00690 [Providencia sneebia DSM 19967]
gi|414099980|gb|EKT61613.1| hypothetical protein OO7_00690 [Providencia sneebia DSM 19967]
Length = 378
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 165/389 (42%), Gaps = 56/389 (14%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRS----PLTLGAGNH 91
++Q+ A LP +V VG+PD+H P + S+ + + + G
Sbjct: 26 AIQQLQTTANLPNMVS-VVGMPDLH--PGRGYPIGAAFFSTQHFYPALVGNDIGCGMSLF 82
Query: 92 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG-HQVATA------GNHYAEIQ 144
+I + DK+ + + D+ + H+ T+ GNH+AE Q
Sbjct: 83 QTDINVRKLSLDKFEKQLLTLSDIASYEWLNEYVPENMQEHEFVTSLSSIGGGNHFAEFQ 142
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+D+I D SK G+ D +++HSGSRG G + + Q + +++N
Sbjct: 143 SIDKIIDNELFSKSGL-DKKNALLLVHSGSRGLGQSILQRHIEQH----GHNGLDSNSLD 197
Query: 205 LACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKT 264
A + +N++++ + N L M A + + D++HN+ +
Sbjct: 198 -AMSYLNAHQDALHFAELNRQLISLRMLQHVHALGE------------MKLDINHNLVEA 244
Query: 265 EEHM-VDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK 323
+DG +HRKG+T P D + V+I G+ G SY++ +
Sbjct: 245 YTFKGIDG-----WLHRKGAT----------PADRGM----VIIPGSRGDYSYLVA--PQ 283
Query: 324 GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--ASPKLVMEEAPESY 381
++ S HGAGR R + + L ++ +L + RV A+ +L+ EEAP+SY
Sbjct: 284 ASDKSLHSLAHGAGRKWMRTECKGRLSHRYTPLQLARTNLGSRVICANKQLIYEEAPQSY 343
Query: 382 KNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
K++ V+++ + +L+P+ K
Sbjct: 344 KSIETVIESMKNAELINVIARLKPILTYK 372
>gi|432371032|ref|ZP_19614096.1| release factor H-coupled RctB family protein [Escherichia coli
KTE11]
gi|430900245|gb|ELC22264.1| release factor H-coupled RctB family protein [Escherichia coli
KTE11]
Length = 383
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 163/397 (41%), Gaps = 72/397 (18%)
Query: 36 GVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYA 93
++Q+ A LP + R VG+PD+H P + S + + + +G G
Sbjct: 30 AIQQLHTTAKLPDM-QRVVGMPDLH--PGRGYPIGAAFFSVGRFYPALVGNDIGCGMALW 86
Query: 94 EIQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATA-------GNHYAEIQ 144
+ I+ Y DK+ ++DV + + + F + GNH+AE+Q
Sbjct: 87 QTDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQ 146
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKR 195
+D+I + + G+ D + +++HSGSRG G + + + A++
Sbjct: 147 QIDQIINAELFALAGM-DARYLQLLVHSGSRGLGQSILQRHIASFSHHGLPEVCDDALR- 204
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIY 255
I +D LA AR+N +I +Q T ++
Sbjct: 205 -YIAEHDDALAFARMNRQ-------------------MIALRMMQQVKATGS-----LVL 239
Query: 256 DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCS 315
DV+HN + G Q+ L HRKG+T P D L V+I G+ G S
Sbjct: 240 DVAHNFITASQ---IGDQQGWL-HRKGAT----------PDDSGL----VVIPGSRGDFS 281
Query: 316 YVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS--PKLV 373
+++ +ET S HGAGR R + + L + + +L + RV +L+
Sbjct: 282 WLVQPVI--CEETLHSLAHGAGRKWGRTECKGRLAAKYTVTQLSRTELGSRVICRDKQLI 339
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 340 FEEAPQAYKSAESVVQCLVRAGLVNPVARLRPVLTLK 376
>gi|19554195|ref|NP_602197.1| hypothetical protein NCgl2899 [Corynebacterium glutamicum ATCC
13032]
gi|62391850|ref|YP_227252.1| hypothetical protein cg3329 [Corynebacterium glutamicum ATCC 13032]
gi|21325774|dbj|BAC00395.1| Uncharacterized ACR [Corynebacterium glutamicum ATCC 13032]
gi|41222997|emb|CAF18942.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
13032]
Length = 383
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 45/278 (16%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE+ W + +HSGSRG G+++A + + K
Sbjct: 147 GNHFIEL-CLDELDRVW--------------MFLHSGSRGVGNKIAQKHIKIAQAECK-- 189
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDD--LDMHVIYDAFAKQFNTTPD-DLDMHV 253
N E D+ LA + + +++ K+ N L+ + D FA++ D L+
Sbjct: 190 NEELPDKDLAYLTEGTEEFESYIKELNWAQRFAFLNREEMMDRFARELGFFVDKQLEEVE 249
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+ HN EEH +T+ + RKG+ A G P LI G+MGT
Sbjct: 250 RINCHHNYTVQEEHY----GETIWLTRKGAVLADE-------------GTPALIPGSMGT 292
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SYV++G KG E S HGAGR +SR ++++ + L+S+ I K
Sbjct: 293 ASYVVSG--KGNAEALRSAPHGAGRRMSRNQAKKRFSTAD----LDSRMAGIVYRPGKEW 346
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++E P++YK++ V+ A + KLR + +KG
Sbjct: 347 IDEIPDAYKDIDQVM--ADAADLVTIRHKLRQIVNVKG 382
>gi|421787811|ref|ZP_16224140.1| protein RtcB [Acinetobacter baumannii Naval-82]
gi|410405687|gb|EKP57722.1| protein RtcB [Acinetobacter baumannii Naval-82]
Length = 401
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE D W VM+HSGSRG G+ + T + +K ++
Sbjct: 164 GNHFIEL-CIDENQDVW--------------VMLHSGSRGLGNVIGTYFIELAKKEVQHR 208
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNTTPD 247
D+ L+ S + A+++ M +I +A F T +
Sbjct: 209 FGHVPDKDLSYFAEGSQSFNDYVEAVEWAQEYAFENRKEMMRLILEAIRPLLPSFQMTKE 268
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H + L V RKG+ RA +IP
Sbjct: 269 AINCH------HNYVSQETHF----GENLFVTRKGAIRAGLDELGIIP------------ 306
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG SY++ G K E+F S HGAGR +SR+K++ + Q+++ ++QGI R
Sbjct: 307 -GSMGARSYIVKG--KANPESFCSCSHGAGRKMSRSKAKVLFNQQDLIE--QTQGIECRK 361
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V++E P +YK++ +V+ + + + L+ V IKG
Sbjct: 362 DSG--VVDEIPSAYKDIDEVI--ANQADLIEVVHTLKQVLCIKG 401
>gi|423083944|ref|ZP_17072472.1| release factor H-coupled RctB family protein [Clostridium difficile
002-P50-2011]
gi|423087357|ref|ZP_17075745.1| release factor H-coupled RctB family protein [Clostridium difficile
050-P50-2011]
gi|357543742|gb|EHJ25757.1| release factor H-coupled RctB family protein [Clostridium difficile
002-P50-2011]
gi|357544775|gb|EHJ26762.1| release factor H-coupled RctB family protein [Clostridium difficile
050-P50-2011]
Length = 355
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 171/395 (43%), Gaps = 80/395 (20%)
Query: 38 KQIANVAALPGIVGRSVGLPDVHS--VPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEI 95
KQ+ +++ L GI+ R VGLPD+H+ +P + + +I +G G +
Sbjct: 20 KQLEDISKLNGIL-RVVGLPDLHAGKIPVGLAVETKNIIYPHIIGND---IGCGMTLFKT 75
Query: 96 QIVDEIYDKWAASKM--GIEDVGQV---------CVMIHSGSRGFGHQVATAGNHYAEIQ 144
I+ + + K K+ I+D+ + C +++ G+ G +GNH+ EIQ
Sbjct: 76 GILKKKFKKDKWIKLLSKIKDLSDIEIKNTYKEECPILNLGTIG-------SGNHFVEIQ 128
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT-----DAL-VQMEKAMKRDNI 198
+ EIY+K ++ + +++H GSR +G + D L V+ EKA+ D I
Sbjct: 129 CISEIYNKEQFEQLKFSS-DDIMMLVHCGSRNYGEDILKKFYDKDGLEVESEKAI--DYI 185
Query: 199 ETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVS 258
+ +D L A N +A +K K + D+ I+ ++
Sbjct: 186 KNHDNALIWAERN---REAISK-------------------KIMQSIGTSGDVETIFSIN 223
Query: 259 HNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVL 318
HN + K++ +HRKG+ + V+I G+ G+ SY++
Sbjct: 224 HNFIE--------KREDKFIHRKGAVSS--------------ERGAVIIPGSRGSLSYIV 261
Query: 319 TGTEKGMQETFGSTCHGAGRALSRA--KSRRNLDYQEVLNKLESQGISIRVASPKLVMEE 376
TE + + S HGAGR SR+ KSR Y + K I L+ +E
Sbjct: 262 MPTE-NTEISLYSLSHGAGRKWSRSVCKSRLKSKYSKDTIKQTKFKSQIICNDVNLLFQE 320
Query: 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
AP++YKN+ ++++ + + ++P+ KG
Sbjct: 321 APQAYKNIEQIIESLIEYELIQVVATMKPLITYKG 355
>gi|424054330|ref|ZP_17791855.1| hypothetical protein W9I_03454 [Acinetobacter nosocomialis Ab22222]
gi|425742257|ref|ZP_18860372.1| protein RtcB [Acinetobacter baumannii WC-487]
gi|407441820|gb|EKF48323.1| hypothetical protein W9I_03454 [Acinetobacter nosocomialis Ab22222]
gi|425488221|gb|EKU54560.1| protein RtcB [Acinetobacter baumannii WC-487]
Length = 401
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 127/284 (44%), Gaps = 55/284 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ E+ +DE D W VM+HSGSRG G+ + T + +K +
Sbjct: 164 GNHFIEL-CIDENQDVW--------------VMLHSGSRGLGNVIGTYFIELAKKEAQHR 208
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDA---FAKQFNTTPD 247
D+ L+ SN + A+++ M ++ +A F T +
Sbjct: 209 FGHVPDKDLSYFAEGSNSFNDYVEAVEWAQEYAFENRKEMMRLVLEAIRPLLPSFQMTKE 268
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
++ H HN E H + LLV RKG+ RA +IP
Sbjct: 269 AINCH------HNYVSRETHF----GENLLVTRKGAIRAGLNELGIIP------------ 306
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MG SY++ G K E+F S HGAGR +SR+K++ + Q+++ ++QGI R
Sbjct: 307 -GSMGARSYIVRG--KANPESFCSCSHGAGRKMSRSKAKILFNQQDLIE--QTQGIECRK 361
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S V++E P +YK++ +V+ + + + L+ V IKG
Sbjct: 362 DSG--VVDEIPSAYKDIDEVM--ANQSDLIEVVHTLKQVLCIKG 401
>gi|419923463|ref|ZP_14441409.1| hypothetical protein EC54115_10756 [Escherichia coli 541-15]
gi|388393784|gb|EIL55137.1| hypothetical protein EC54115_10756 [Escherichia coli 541-15]
Length = 379
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 160/396 (40%), Gaps = 72/396 (18%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPL--TLGAGNHYAE 94
++Q+ A LP + R VG+PD+H P + S+ + + + +G G +
Sbjct: 27 IQQLHTTANLPNM-QRVVGMPDLH--PGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQ 83
Query: 95 IQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQ-------VATAGNHYAEIQI 145
I+ Y DK+ ++DV + + + F GNH+AE+Q
Sbjct: 84 TDILARKYNADKFEKRLSALDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQ 143
Query: 146 VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM---------EKAMKRD 196
VD+I D + G+ D + +++HSGSRG G + + + A++
Sbjct: 144 VDQIIDAELFALAGL-DAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRY- 201
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
I +D LA ARIN +I +Q + D
Sbjct: 202 -IAEHDDALAFARINRQ-------------------LIALRIMQQVKAIGSP-----VLD 236
Query: 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY 316
V+HN + G Q+ L HRKG+T P D L V+I G+ G S+
Sbjct: 237 VAHNFVSVCQ---IGDQQGWL-HRKGAT----------PDDNGL----VIIPGSRGDYSW 278
Query: 317 VLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA--SPKLVM 374
++ ++T S HGAGR R + + L + +L + RV +L+
Sbjct: 279 LVQPVAN--EKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIF 336
Query: 375 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
EEAP++YK+ VV G+ +LRPV +K
Sbjct: 337 EEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLK 372
>gi|170728230|ref|YP_001762256.1| release factor H-coupled RctB family protein [Shewanella woodyi
ATCC 51908]
gi|169813577|gb|ACA88161.1| release factor H-coupled RctB family protein [Shewanella woodyi
ATCC 51908]
Length = 392
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 39/281 (13%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
GNH+AE Q +DE+YD+ A +G+ Q+ +++HSGSRG G + + + +
Sbjct: 138 GGNHFAEFQAIDEVYDQAALEYLGLNKR-QLQLLVHSGSRGLGQSILVEHISKHNH---- 192
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTP-DDLDMHVIYDAFAKQFNTTPDDLDMHVI 254
N + A + + K +L+ +I F D +
Sbjct: 193 -----NGLLVEGADVGDSFQDYIRKHDEAVRWAELNRELIALRFLDSIRAKGD-----CV 242
Query: 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTC 314
D++HN+ + +DG++ L HRKG+T P D V+I G+ G
Sbjct: 243 LDINHNLVSAQN--IDGREGWL--HRKGAT----------PSDKGY----VVIPGSRGDY 284
Query: 315 SYV---LTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV--AS 369
SY+ L ++ + S HGAGR R + L ++ L + RV +
Sbjct: 285 SYLVKPLCSNGDALKVSLFSLAHGAGRKWKRGECHGRLGHKYKREDLYRTALGSRVVCGN 344
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+L+ +EAP++YK V+ G+ + KLRPV K
Sbjct: 345 KELLYDEAPQAYKKCETVIKDMVDAGLIELVAKLRPVLTFK 385
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 75 SSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 133
+++ + R+ T+G GNH+AE Q +DE+YD+ A +G+ Q+ +++HSGSRG G +
Sbjct: 125 TTDSYDRALGTIGGGNHFAEFQAIDEVYDQAALEYLGLNKR-QLQLLVHSGSRGLGQSI 182
>gi|417549628|ref|ZP_12200708.1| protein RtcB [Acinetobacter baumannii Naval-18]
gi|417567482|ref|ZP_12218354.1| protein RtcB [Acinetobacter baumannii OIFC143]
gi|395553154|gb|EJG19162.1| protein RtcB [Acinetobacter baumannii OIFC143]
gi|400387596|gb|EJP50669.1| protein RtcB [Acinetobacter baumannii Naval-18]
Length = 422
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNYFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE+F S HGAGR +SR +++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQESFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
>gi|445492634|ref|ZP_21460581.1| protein RtcB [Acinetobacter baumannii AA-014]
gi|444763873|gb|ELW88209.1| protein RtcB [Acinetobacter baumannii AA-014]
Length = 422
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 56/285 (19%)
Query: 137 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRD 196
GNH+ EI +DE W +M+HSGSRG G+ + + K M++
Sbjct: 184 GNHFVEI-CLDEHDHVW--------------IMLHSGSRGVGNAIGNHFIELARKDMQKH 228
Query: 197 NIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFA----KQFNTTP 246
I ++ LA + + A++F ++ M A A K F
Sbjct: 229 FINLPNKDLAYLVEGTEHFDDYWFAVGWAQRFAMKNREIMMQSAIKALATIVPKPFQARL 288
Query: 247 DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL 306
+ ++ H HN + EEH + ++V RKG+ RA + +IP
Sbjct: 289 EAVNCH------HNYVEKEEHY----GEEVMVTRKGAVRARLGEYGIIP----------- 327
Query: 307 IGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIR 366
G+MG S+++ G G QE F S HGAGR +SR +++R ++ + +++G+ R
Sbjct: 328 --GSMGAKSFIVRGL--GNQEAFCSCSHGAGRVMSRTEAKRRFTVEDQI--AQTEGVECR 381
Query: 367 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V++E P +YK + DV+ + + + LR V +KG
Sbjct: 382 --KDAAVIDEIPSAYKPIEDVMKA--QSDLVEVVYTLRQVVCVKG 422
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,546,970,745
Number of Sequences: 23463169
Number of extensions: 422771209
Number of successful extensions: 953012
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 1524
Number of HSP's that attempted gapping in prelim test: 940884
Number of HSP's gapped (non-prelim): 7723
length of query: 574
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 426
effective length of database: 8,886,646,355
effective search space: 3785711347230
effective search space used: 3785711347230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)