BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10975
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UC2|A Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
pdb|1UC2|B Chain B, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
pdb|4DWQ|A Chain A, Rtcb-GmpMN2+ COMPLEX
pdb|4DWQ|B Chain B, Rtcb-GmpMN2+ COMPLEX
Length = 481
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 200 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 259 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 318
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 319 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 378
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 379 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 438
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 439 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E
Sbjct: 111 EVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 171 EGGRMEGADPEAVSQRAKQRGAPQL 195
>pdb|4DWR|B Chain B, Rna Ligase RtcbMN2+ COMPLEX
pdb|4DWR|A Chain A, Rna Ligase RtcbMN2+ COMPLEX
pdb|4DWR|C Chain C, Rna Ligase RtcbMN2+ COMPLEX
Length = 487
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 200 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 259 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 318
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 319 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 378
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 379 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 438
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 439 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E
Sbjct: 111 EVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLE 170
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 171 EGGRMEGADPEAVSQRAKQRGAPQL 195
>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
Length = 487
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/288 (43%), Positives = 177/288 (61%), Gaps = 14/288 (4%)
Query: 132 QVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
Q+ T +GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG GHQV D + +
Sbjct: 206 QIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQDYVERF 264
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFN 243
K R IE D+QLA A I S + + + + + L H + +AF K
Sbjct: 265 LKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAXAAAANFAFANRQLIAHFVREAFEK-VG 323
Query: 244 TTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ 303
TP D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP +P +Y+ GQ
Sbjct: 324 FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQ 379
Query: 304 PVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGI 363
PVL+ G G SYVL GTEK + +FGS+CHGAGR SR ++++ + ++ +L +GI
Sbjct: 380 PVLVPGDXGRYSYVLAGTEKAXEVSFGSSCHGAGRKXSRHQAKKVARERNLVKELAERGI 439
Query: 364 SIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+R A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 440 LVRAATRATVDEEXPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 487
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 471 LAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+
Sbjct: 130 LADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPW 189
Query: 530 ADPSKVSMRAKKRGLPQV 547
A+P KVS RA +RG PQ+
Sbjct: 190 ANPDKVSERAFERGAPQI 207
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 415 NERLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E
Sbjct: 127 QKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIE 182
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
++Q+ NVA LPGIV ++ PD+H
Sbjct: 54 LQQLXNVATLPGIVEPALAXPDIH 77
>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GGS|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
Length = 311
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 130 GHQVATAGNHYAEIQIVDE--IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALV 187
G V AG + Q V E + K A +G+ V +V V H G R FG + TD ++
Sbjct: 212 GTYVMVAGPSF---QTVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITDKVI 268
Query: 188 QMEKAMKRDNIETNDRQLACARINSNKNKAF 218
+++++ N ++ LA + + K + F
Sbjct: 269 MDYESLEKAN---HEEVLAAGKQAAQKLEQF 296
>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f
Mutant
pdb|2ON6|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257f With Imm-H
Length = 289
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 130 GHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
G V AG + + + K A +G+ V +V V H G R FG + T+ ++
Sbjct: 190 GTYVMVAGPSFETVAEC-RVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD 248
Query: 190 EKAMKRDNIE 199
+++++ N E
Sbjct: 249 YESLEKANFE 258
>pdb|1CP9|A Chain A, Crystal Structure Of Penicillin G Acylase From The Bro1
Mutant Strain Of Providencia Rettgeri
Length = 205
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 171 HSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN-------KAFAKQFN 223
+S G+G+ VA D L QME A KR T I+ +K + KQ N
Sbjct: 23 YSLFYGYGYAVAQDRLFQMEMA-KRSTQGTVSEVFGKDYISFDKEIRNNYWPDSIHKQIN 81
Query: 224 TTPD-DLDMHVIY----DAFAKQFNTTPDDL 249
P + D+ Y +A+ KQ NT PDDL
Sbjct: 82 QLPSQEQDILRGYADGMNAWIKQINTKPDDL 112
>pdb|4EAR|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
Length = 324
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 149 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIE 199
+ K A +G+ V +V V H G R FG + T+ ++ +++++ N E
Sbjct: 243 VLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANXE 293
>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d
Mutant
pdb|2OC4|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257d With Imm-H
Length = 289
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 130 GHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
G V AG + + + K A +G+ V +V V H G R FG + T+ ++
Sbjct: 190 GTYVMVAGPSFETVAEC-RVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD 248
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF 218
+++++ N ++ LA + + K + F
Sbjct: 249 YESLEKAN---DEEVLAAGKQAAQKLEQF 274
>pdb|4EB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4ECE|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4GKA|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
Length = 324
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 130 GHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
G V AG + + + K A +G+ V +V V H G R FG + T+ ++
Sbjct: 225 GTYVMVAGPSFETVAEC-RVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD 283
Query: 190 EKAMKRDNIE 199
+++++ N E
Sbjct: 284 YESLEKANWE 293
>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H
pdb|1RR6|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Phosphate
pdb|1RSZ|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Dadme-Immucillin-H And Sulfate
pdb|1RT9|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Sulfate
pdb|1YRY|E Chain E, Crystal Structure Of Human Pnp Complexed With Mesg
pdb|1ULA|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|1ULB|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|3BGS|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase With L-
Dadme-Immh And Phosphate
pdb|2Q7O|E Chain E, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With L- Immucillin-H
pdb|3D1V|A Chain A, Crystal Structure Of Human Pnp Complexed With
2-Mercapto(3h) Quinazolinone
pdb|3K8O|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8Q|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Serme-Immucillin H
pdb|3INY|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With 7-Deazaguanine
Length = 289
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 130 GHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
G V AG + + + K A +G+ V +V V H G R FG + T+ ++
Sbjct: 190 GTYVMVAGPSFETVAEC-RVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD 248
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF 218
+++++ N ++ LA + + K + F
Sbjct: 249 YESLEKAN---HEEVLAAGKQAAQKLEQF 274
>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
Length = 324
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 130 GHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
G V AG + + + K A +G+ V +V V H G R FG + T+ ++
Sbjct: 225 GTYVMVAGPSFETVAEC-RVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD 283
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF 218
+++++ N ++ LA + + K + F
Sbjct: 284 YESLEKAN---HEEVLAAGKQAAQKLEQF 309
>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution
pdb|1RCT|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Inosine
pdb|1V2H|E Chain E, Crystal Structure Of Human Pnp Complexed With Guanine
pdb|1V3Q|E Chain E, Structure Of Human Pnp Complexed With Ddi
pdb|1PWY|E Chain E, Crystal Structure Of Human Pnp Complexed With Acyclovir
pdb|1RFG|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Guanosine
pdb|1V41|E Chain E, Crystal Structure Of Human Pnp Complexed With 8-Azaguanine
pdb|1V45|E Chain E, Crystal Structure Of Human Pnp Complexed With
3-Deoxyguanosine
Length = 288
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 130 GHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM 189
G V AG + + + K A +G+ V +V V H G R FG + T+ ++
Sbjct: 189 GTYVMVAGPSFETVAEC-RVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD 247
Query: 190 EKAMKRDNIETNDRQLACARINSNKNKAF 218
+++++ N ++ LA + + K + F
Sbjct: 248 YESLEKAN---HEEVLAAGKQAAQKLEQF 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,343,819
Number of Sequences: 62578
Number of extensions: 801742
Number of successful extensions: 1938
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1872
Number of HSP's gapped (non-prelim): 56
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)