BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10975
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VIW7|RTCB_DROME tRNA-splicing ligase RtcB homolog OS=Drosophila melanogaster
GN=CG9987 PE=1 SV=1
Length = 506
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 279/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG F+VN LE+LMLEEL+NSCRPG VGGF LPG+
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
P+ +G+ G + ++E + WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K + ++ +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPL 388
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY++
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKD 448
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 449 VLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 79/79 (100%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVSMRAKKRGLPQ+
Sbjct: 202 NADPAKVSMRAKKRGLPQL 220
>sp|B0WCT9|RTCB1_CULQU tRNA-splicing ligase RtcB homolog 1 OS=Culex quinquefasciatus
GN=CPIJ004874 PE=3 SV=1
Length = 506
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 272/479 (56%), Positives = 323/479 (67%), Gaps = 71/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LEKLM +ELRNSCRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSRLEKLMFDELRNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMSDPTSIVSPGGVGFDINC-GVRLLRTNLFEKDVKPVQEQLAQSLF 149
Query: 80 KRSPLTLGA------GNHYAEIQI-------VDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ H E + + E Y WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLTADPSKV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 209 SMRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + +
Sbjct: 268 HQVATDALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSAAANFAWVNRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLVHRKGSTRAFPPHHP
Sbjct: 328 LTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLVHRKGSTRAFPPHHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQLTGQPVL+GG+MGTCS+VLTGTEKGM ETFGSTCHGAGR+LSRAKSRRNLDY+
Sbjct: 388 LIPVDYQLTGQPVLVGGSMGTCSFVLTGTEKGMAETFGSTCHGAGRSLSRAKSRRNLDYK 447
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL LE++GISIRVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 448 DVLRDLEAKGISIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISSKCIKLRPIAVIKG 506
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 81/93 (87%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+W
Sbjct: 128 LRTNLFEKDVKPVQEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML ADPSKVSMRAKKRGLPQ+
Sbjct: 188 AEDKEHCEEYGRMLTADPSKVSMRAKKRGLPQL 220
>sp|Q7Q412|RTCB_ANOGA tRNA-splicing ligase RtcB homolog OS=Anopheles gambiae
GN=AGAP008147 PE=3 SV=2
Length = 506
Score = 488 bits (1257), Expect = e-137, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 320/480 (66%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LEKLM +ELRN+CRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSRLEKLMFDELRNACRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 91 SGYGFAIGNMAAFDMSDPTSIVSPGGVGFDINCGVRLLRTNLFEKDVQPVKEQLAQSLFD 150
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 151 HI--PVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLNADPSK 207
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGF
Sbjct: 208 VSLRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGF 266
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDM 231
GHQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + +
Sbjct: 267 GHQVATDALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSAAANFAWVNRSSMT 326
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMV+G+ K LLVHRKGSTRAFPPHH
Sbjct: 327 FLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVNGRPKQLLVHRKGSTRAFPPHH 386
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVL+GG+MGTCS+VLTGTE GM ETFGSTCHGAGR+LSRAKSRRNLDY
Sbjct: 387 PLIPVDYQLTGQPVLVGGSMGTCSFVLTGTETGMVETFGSTCHGAGRSLSRAKSRRNLDY 446
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++VL LE +GISIRVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 447 KDVLRDLEEKGISIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISNKAIKLRPIAVIKG 506
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 78/79 (98%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADPSKVS+RAKKRGLPQ+
Sbjct: 202 NADPSKVSLRAKKRGLPQL 220
>sp|Q17FP1|RTCB_AEDAE tRNA-splicing ligase RtcB homolog OS=Aedes aegypti GN=AAEL003336
PE=3 SV=1
Length = 506
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 270/479 (56%), Positives = 322/479 (67%), Gaps = 71/479 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LE+LM +ELRNSCRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSKLERLMFDELRNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMSNPVSIVSPGGVGFDINC-GVRLLRTNLFEKDVKPVQEQLAQSLF 149
Query: 80 KRSPLTLGA------GNHYAEIQI-------VDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ H E + + E Y WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLNADPSKV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 209 SMRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKFAASKMGIEELGQICVMIHSGSRGFG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + ++
Sbjct: 268 HQVATDALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMAAAANFAWVNRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLVHRKGSTRA PPHHP
Sbjct: 328 LTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLVHRKGSTRALPPHHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQLTGQPVLIGG+MGTCS+VLTGTEKGM TFGSTCHGAGR+LSRAKSRRNLDY+
Sbjct: 388 LIPVDYQLTGQPVLIGGSMGTCSFVLTGTEKGMAATFGSTCHGAGRSLSRAKSRRNLDYK 447
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VL LE++GI+IRVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 448 DVLRDLEAKGIAIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISAKAIKLRPIAVIKG 506
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 82/93 (88%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+W
Sbjct: 128 LRTNLFEKDVKPVQEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ+
Sbjct: 188 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQL 220
>sp|Q6NZS4|RTCB_DANRE tRNA-splicing ligase RtcB homolog OS=Danio rerio GN=zgc:76871 PE=2
SV=1
Length = 505
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/480 (57%), Positives = 314/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VND LEKLM EELRN+CR G GGFLP +KQ
Sbjct: 30 MLVEGVFYVNDPLEKLMFEELRNACRGGGFGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGLP-----------DVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNMAAFDMENPDAVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF+K F+TTPDDLDMHVIYDVSHNIAK EEHMVDG+QKTLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS +AKKRGLPQ+
Sbjct: 201 QADPNKVSSKAKKRGLPQL 219
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPNKVSSK 210
>sp|A8QC60|RTCB_BRUMA tRNA-splicing ligase RtcB homolog OS=Brugia malayi GN=Bm1_49220
PE=3 SV=1
Length = 505
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 268/480 (55%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNVEG F+VN LEKLM EELRN+CR +GGFLP V+QI
Sbjct: 30 MNVEGRFYVNTALEKLMFEELRNACRLDGIGGFLPAVRQIGNVAALPAIVNASIGLPDIH 89
Query: 42 --------NVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNIAAFDVSDPDAVVSPGGVGFDINCGVRLIRTNLSEKDVQPVKEQLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGIIPIGAQQFEECLEMGMDWTLREGY-SWAEDKEHCEEYGRMLQADAAK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHY E+Q++DEIYD++AAS+MGI+ +GQVC+MIH GSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYGEVQVIDEIYDEYAASRMGIDRLGQVCIMIHCGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATD+LV MEKAMKRDNI NDRQLACARINS K A A F
Sbjct: 266 GHQVATDSLVVMEKAMKRDNIIVNDRQLACARINSMEGQDYLKGMAAAANFAWVNRSCMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
AFAK FNT+PDDLDMHVIYDVSHNIAK EEH+++G+ K L VHRKGSTRAFPPHH
Sbjct: 326 FCARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLINGRPKQLCVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETF +TCHGAGRALSRAKSRRN+D+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMNETFATTCHGAGRALSRAKSRRNIDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QEVLNK+++ GISIRVASPKLVMEEAPESYKNVTDVV+TCH GISKK+ KLRP+AVIKG
Sbjct: 446 QEVLNKMQAMGISIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKSVKLRPIAVIKG 505
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +KVS RAKKRGLPQ+
Sbjct: 201 QADAAKVSPRAKKRGLPQL 219
>sp|A7RKF6|RTCB_NEMVE tRNA-splicing ligase RtcB homolog OS=Nematostella vectensis
GN=v1g198406 PE=3 SV=1
Length = 505
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/480 (56%), Positives = 312/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG F++N+HLEKLM +ELR+ C +GGFLPGVKQ
Sbjct: 30 MKVEGKFYINEHLEKLMFDELRHWCGAQGIGGFLPGVKQIANVAALPGIVGYSVGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q L D
Sbjct: 90 SGYGFAIGNMAAFDMSLPEAVVSPGGVGFDINCGVRLLRTNLEEKDVQPVKERLAQSLFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEDALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADSAK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIY+++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSAKAKKRGL-PQLGTLGAGNHYAEIQVVDEIYNEFAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD IE NDRQLACA I S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIEVNDRQLACAHIKSPEGQDYLKGMAGAANYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FN+TPDDLDMH+IYDVSHNIAK EEH +DG+Q+ LLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNSTPDDLDMHLIYDVSHNIAKVEEHFLDGRQRQLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM ETFG+TCHGAGRALSRAKSRRNLDY
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMTETFGTTCHGAGRALSRAKSRRNLDY 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL L +GISIRVASPKLVMEEAPESYKNVTDVVDTCH+ GISKK KLRP+AVIKG
Sbjct: 446 QDVLENLAQKGISIRVASPKLVMEEAPESYKNVTDVVDTCHSAGISKKAIKLRPIAVIKG 505
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 74/79 (93%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
ERLAQS+FDHIPVGVGSKG+IPM A+DLE+ALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 ERLAQSLFDHIPVGVGSKGVIPMGAKDLEDALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +KVS +AKKRGLPQ+
Sbjct: 201 QADSAKVSAKAKKRGLPQL 219
>sp|Q561P3|RTCB_XENTR tRNA-splicing ligase RtcB homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 505
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 315/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEGVF+VND LEKLM EELRN+ R G GGFLP +KQ
Sbjct: 30 MQVEGVFYVNDPLEKLMFEELRNASRGGAAGGFLPAMKQIGNVAALPGIIHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMDNPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + +GA + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMGAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPSK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAE+Q+VD+IYD++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSSKAKKRGL-PQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI+S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK+KTLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADLGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADPSKVS +AKKRGLPQ+
Sbjct: 201 QADPSKVSSKAKKRGLPQL 219
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPSKVSSK 210
>sp|A9CB42|RTCB_PAPAN tRNA-splicing ligase RtcB homolog OS=Papio anubis PE=3 SV=1
Length = 505
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDSEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>sp|Q4R6X4|RTCB_MACFA tRNA-splicing ligase RtcB homolog OS=Macaca fascicularis
GN=QtsA-16939 PE=2 SV=1
Length = 505
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDSEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>sp|Q5E9T9|RTCB_BOVIN tRNA-splicing ligase RtcB homolog OS=Bos taurus PE=2 SV=1
Length = 505
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDSLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>sp|Q9Y3I0|RTCB_HUMAN tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=C22orf28 PE=1
SV=1
Length = 505
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>sp|Q19PY3|RTCB_PIG tRNA-splicing ligase RtcB homolog OS=Sus scrofa PE=2 SV=1
Length = 505
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSARAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSARAKKRGLPQL 219
>sp|Q6AYT3|RTCB_RAT tRNA-splicing ligase RtcB homolog OS=Rattus norvegicus PE=2 SV=1
Length = 505
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>sp|Q99LF4|RTCB_MOUSE tRNA-splicing ligase RtcB homolog OS=Mus musculus GN=D10Wsu52e PE=2
SV=1
Length = 505
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/480 (56%), Positives = 313/480 (65%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVKQ--------- 39
M VEGVF+VND LEKLM EELRN+CR G VGGF LPG+
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 90 SGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFD 149
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 150 HI--PVGVGSKGVIPMNAKDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLQADPNK 206
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG
Sbjct: 207 VSPRAKKRGL-PQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGL 265
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD I NDRQLACARI S K A A +
Sbjct: 266 GHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMT 325
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRKGSTRAFPPHH
Sbjct: 326 FLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHH 385
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG+TCHGAGRALSRAKSRRNLD+
Sbjct: 386 PLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDF 445
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 446 QDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 201 QADPNKVSPRAKKRGLPQL 219
>sp|C1E9Y5|RTCB_MICSR tRNA-splicing ligase RtcB homolog OS=Micromonas sp. (strain RCC299
/ NOUM17) GN=MICPUN_59883 PE=3 SV=1
Length = 513
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 265/478 (55%), Positives = 308/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
M V GVF+VN HLE LM +ELR G VGGFLP VKQ+ANVA LPGIV
Sbjct: 38 MRVPGVFYVNKHLETLMFDELRQHVDRGDVGGFLPAVKQLANVACLPGIVSKSIALPDVH 97
Query: 51 ---GRSVG------LPDVHSVPS-------------------------------TQWLSD 70
G ++G + D ++V S Q L D
Sbjct: 98 SGYGFAIGNVAAFDMSDPNAVVSPGGVGFDINCGVRVVRTNLHERDVTDIKEKLAQSLFD 157
Query: 71 NT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------VM 121
+ + S I SP L A + E Y WA K E+ G++ V
Sbjct: 158 HIPVGVGSQGIIPTSPAGLEAALEMGMDWSLREGY-AWAEDKEHCEEYGRMLNADPNKVS 216
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI+DK AA KMGIE +GQV VMIHSGSRG GH
Sbjct: 217 ARAKKRGL-PQMGTLGAGNHYAEIQVVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLGH 275
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHV 233
QVATDAL +ME+AM RD I NDRQLACA+I+S + + + A + +
Sbjct: 276 QVATDALTEMERAMARDGILVNDRQLACAKISSPEGQNYLSAMSCAANYAWVNRSSMTFL 335
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F+ TPDDLDMHV+YDVSHNIAK EEH+VDG+ KTLLVHRKGSTRAFPPHHPL
Sbjct: 336 CRQAFAKMFDQTPDDLDMHVVYDVSHNIAKIEEHVVDGELKTLLVHRKGSTRAFPPHHPL 395
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ TGQPVLIGGTMGTCSY+LTGTEKGM+ETFGSTCHGAGRA SR SR LDY E
Sbjct: 396 IPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMEETFGSTCHGAGRARSRNNSRNKLDYTE 455
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL KL+++GI+IRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 456 VLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 513
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 149 EKLAQSLFDHIPVGVGSQGIIPTSPAGLEAALEMGMDWSLREGYAWAEDKEHCEEYGRML 208
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVS RAKKRGLPQ+
Sbjct: 209 NADPNKVSARAKKRGLPQM 227
>sp|A9UXG6|RTCB_MONBE tRNA-splicing ligase RtcB homolog OS=Monosiga brevicollis GN=24995
PE=3 SV=1
Length = 497
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 265/480 (55%), Positives = 311/480 (64%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M VEG F+VN LE LMLEEL+ VGGFLP VKQ
Sbjct: 22 MKVEGRFYVNKALEALMLEELQQFASARGVGGFLPAVKQIANVASLPGIVGASVGLPDVH 81
Query: 40 ------IANVAAL----------PGIVGRSVG-----------LPDVHSVPS--TQWLSD 70
I N+AA PG VG + L DV V Q L D
Sbjct: 82 SGYGFAIGNMAAFDMDDPEAIVSPGGVGFDINCGVRLLRTNLTLEDVEPVKEQLAQSLFD 141
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVGQVC------ 119
+ + + + + A + +++ + E Y WA K E+ G++
Sbjct: 142 HI--PVGVGSKGVIPMNAKDLEEALEMGMDWSLREGY-AWAEDKEHCEEYGRMLQADASK 198
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+V+EIYDK AA+KMGI Q+CVMIHSGSRG
Sbjct: 199 VSARAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKEAAAKMGINKKNQICVMIHSGSRGL 257
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH----- 232
GHQVATDALV MEKAMKRD IE NDRQLACARI+S + + + K + ++
Sbjct: 258 GHQVATDALVAMEKAMKRDGIEVNDRQLACARIHSEEGQNYLKAMAAAANYAWVNRSTMT 317
Query: 233 -VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAKQFNTTP++LDMHVIYDVSHNIAKTE HMV+G ++TLLVHRKGSTRAFPPHH
Sbjct: 318 FLCRQAFAKQFNTTPEELDMHVIYDVSHNIAKTERHMVNGTERTLLVHRKGSTRAFPPHH 377
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQL GQPVLIGGTMGTCSYVLTGT+ G ++TFGSTCHGAGRALSRAKSRR LDY
Sbjct: 378 PLIPVDYQLIGQPVLIGGTMGTCSYVLTGTDTGFRDTFGSTCHGAGRALSRAKSRRTLDY 437
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
Q+VL+KL+ +GI+IRVASPKLVMEEAPESYK+VT VVDTCHA GISKK KLRP+AVIKG
Sbjct: 438 QQVLDKLDKKGIAIRVASPKLVMEEAPESYKDVTAVVDTCHAAGISKKVVKLRPIAVIKG 497
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPMNA+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 133 EQLAQSLFDHIPVGVGSKGVIPMNAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRML 192
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SKVS RAKKRGLPQ+
Sbjct: 193 QADASKVSARAKKRGLPQL 211
>sp|C3YN79|RTCB_BRAFL tRNA-splicing ligase RtcB homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_216547 PE=3 SV=1
Length = 507
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/480 (55%), Positives = 305/480 (63%), Gaps = 73/480 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M V+G F+VND LEKLM +ELR R GGFLP +KQ
Sbjct: 32 MKVDGFFYVNDLLEKLMFDELRQHSRAAGFGGFLPAMKQIANVAALPGIVQKSVGLPDVH 91
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I N+AA PG VG + DV V Q + D
Sbjct: 92 AGYGFAIGNLAAFDMSNPEAVVSPGGVGFDINCGVRLLRTNLDERDVQPVKDELAQAMFD 151
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI-----VDEIYDKWAASKMGIEDVG------QVC 119
+ + + + +GA + +++ + E Y WA K E+ G Q
Sbjct: 152 HI--PVGVGSKGVIPMGARDLEEALEMGVDWSLREGY-AWAEDKEHCEEYGRMLNADQSA 208
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEI+D +A+ +MGI+ GQV VMIHSGSRGF
Sbjct: 209 VGSKAKKRGL-PQLGTLGAGNHYAEIQVVDEIFDDYASQRMGIDHKGQVVVMIHSGSRGF 267
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDM 231
GHQVATDALV MEKAMKRD + TNDRQLACARI+S K A A F
Sbjct: 268 GHQVATDALVAMEKAMKRDKVLTNDRQLACARIHSPEGQEYLKGMACAANFAWVNRSSMT 327
Query: 232 HVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK FNTTPDDLDM +IYDVSHNIAK EEH+ TLLVHRKGSTRAFPPHH
Sbjct: 328 FLSRQAFAKVFNTTPDDLDMQLIYDVSHNIAKMEEHISFQLSTTLLVHRKGSTRAFPPHH 387
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQL+GQPVLIGGTMGTCSYVLTGTEKGM++TFG+TCHGAGRA SRAKSRRNLDY
Sbjct: 388 PLIPVDYQLSGQPVLIGGTMGTCSYVLTGTEKGMEQTFGTTCHGAGRAWSRAKSRRNLDY 447
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QEVL++L GISIRVASPKLVMEEAPESYKNVTDVV+TCHAVGISKK KLRP+AVIKG
Sbjct: 448 QEVLDRLAELGISIRVASPKLVMEEAPESYKNVTDVVNTCHAVGISKKAIKLRPIAVIKG 507
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
+ LAQ+MFDHIPVGVGSKG+IPM ARDLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 143 DELAQAMFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 202
Query: 529 NADPSKVSMRAKKRGLPQV 547
NAD S V +AKKRGLPQ+
Sbjct: 203 NADQSAVGSKAKKRGLPQL 221
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ + LAQ+MFDHIPVGVGSKG+IPM ARDLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 141 VKDELAQAMFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 200
Query: 474 SMFDHIPVGVGSK 486
M + VGSK
Sbjct: 201 -MLNADQSAVGSK 212
>sp|P90838|RTCB_CAEEL tRNA-splicing ligase RtcB homolog OS=Caenorhabditis elegans
GN=F16A11.2 PE=3 SV=2
Length = 505
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 251/477 (52%), Positives = 308/477 (64%), Gaps = 67/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRS------- 53
MNVEG F+VN+ LE+LM +EL+ SC +GGFLP V+QIANVA+LPGIVG S
Sbjct: 30 MNVEGRFYVNNSLEQLMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIH 89
Query: 54 --------------VGLPDVHSVPSTQWLSDNT---MRSSNIWKRS--PLT--------- 85
VG P+ P N + +N+++ + PL
Sbjct: 90 SGYGFSIGNIAAFDVGNPESVISPGGVGFDINCGVRLLRTNLFEENVKPLKEQLTQSLFD 149
Query: 86 ---LGAGNHYAEIQIVDEIYD--------------KWAASKMGIEDVGQVC------VMI 122
+G G+ A + ++ + WA K E+ G++ V +
Sbjct: 150 HIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASKVSL 209
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAE+Q+VDEIYDK AAS MGI++ GQV VM+H GSRG GHQ
Sbjct: 210 RAKKRGL-PQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDEEGQVVVMLHCGSRGLGHQ 268
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVI 234
VATD+LV+MEKAM RD I ND+QLACARINS + K A A F +
Sbjct: 269 VATDSLVEMEKAMARDGIVVNDKQLACARINSVEGKNYFSGMAAAANFAWVNRSCITFCV 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
+AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ + L VHRKG+TRAFP HHPLI
Sbjct: 329 RNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRQLCVHRKGATRAFPAHHPLI 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
PVDYQL GQPVLIGG+MGTCSYVLTGTE+G+ ETFG+TCHGAGRALSRAKSRR + + V
Sbjct: 389 PVDYQLIGQPVLIGGSMGTCSYVLTGTEQGLVETFGTTCHGAGRALSRAKSRRTITWDSV 448
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ L+ + ISIR+ASPKL+MEEAPESYKNVTDVVDTC A GISKK KLRP+AVIKG
Sbjct: 449 IDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDTCDAAGISKKAVKLRPIAVIKG 505
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 70/79 (88%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD SKVS+RAKKRGLPQ+
Sbjct: 201 QADASKVSLRAKKRGLPQL 219
>sp|C1MI97|RTCB_MICPC tRNA-splicing ligase RtcB homolog OS=Micromonas pusilla (strain
CCMP1545) GN=MICPUCDRAFT_24370 PE=3 SV=1
Length = 507
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/478 (54%), Positives = 298/478 (62%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQ--------------------- 39
M V G F+VN HLE LM EEL+ G GGFLP VKQ
Sbjct: 32 MRVPGTFYVNKHLETLMFEELQQHVDSGGHGGFLPAVKQLANVACLPGIVGKSIAMPDVH 91
Query: 40 ------IANVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
I NVAA PG VG + DV V Q L D
Sbjct: 92 SGYGFCIGNVAAFDMSDPAAVVSPGGVGFDINCGVRVVRTNLMESDVADVKEKLAQALFD 151
Query: 71 NT---MRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------VM 121
+ + S I S L + + E Y WA K E+ G++ V
Sbjct: 152 HIPVGVGSQGIIPTSAAGLESALEMGMDWSLREGY-AWAEDKEHCEEYGRMLTADPNKVS 210
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAEIQ+VDEI+D AA KMG++ VGQV VMIHSGSRG GH
Sbjct: 211 ARAKKRGL-PQMGTLGAGNHYAEIQVVDEIFDAHAAEKMGVDAVGQVMVMIHSGSRGLGH 269
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHV 233
QVATDAL +ME+AM RD IETNDRQLACARINS + + + A + +
Sbjct: 270 QVATDALTEMERAMARDGIETNDRQLACARINSTEGQNYLSAMSCAANYAWVNRSSMTFL 329
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F++TPDDLDMHV+YDVSHNIAK EEHMVDGK KTLLVHRKGSTRAFPPHHPL
Sbjct: 330 CRQAFAKMFDSTPDDLDMHVVYDVSHNIAKIEEHMVDGKLKTLLVHRKGSTRAFPPHHPL 389
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ TGQPV+IGGTMGTCSY+LTGT+KGM ETFGSTCHGAGRA SR SR LDY E
Sbjct: 390 IPVDYQYTGQPVMIGGTMGTCSYILTGTQKGMDETFGSTCHGAGRARSRNNSRNKLDYAE 449
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL L+++GISIRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 450 VLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 507
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ++FDHIPVGVGS+GIIP +A LE ALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 143 EKLAQALFDHIPVGVGSQGIIPTSAAGLESALEMGMDWSLREGYAWAEDKEHCEEYGRML 202
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+KVS RAKKRGLPQ+
Sbjct: 203 TADPNKVSARAKKRGLPQM 221
>sp|B3RID0|RTCB_TRIAD tRNA-splicing ligase RtcB homolog OS=Trichoplax adhaerens
GN=TRIADDRAFT_18395 PE=3 SV=1
Length = 510
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/478 (52%), Positives = 309/478 (64%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
M VEG+F+ + LE LM EEL++ C VGGFLPGVKQI
Sbjct: 35 MKVEGLFYADLPLEHLMFEELQHFCSCNGVGGFLPGVKQIGNVAALPGIVGKSIGLPDIH 94
Query: 42 --------NVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD-NTMRSS---NIW 79
N+AA PG VG + V + + D N M+ + +++
Sbjct: 95 SGYGFAIGNIAAFDVANPKAIVSPGGVGFDINC-GVRLIRTNLHERDVNPMKETLAQSLF 153
Query: 80 KRSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQVC------VM 121
P+ +G+ G + +DE + WA K E+ G++ +
Sbjct: 154 DHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADSNKIS 213
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQ VDEIYD +AA MGI GQ+C+M+HSGSRG GH
Sbjct: 214 LRAKKRGL-PQLGTLGAGNHYAEIQAVDEIYDSFAAKSMGINRRGQICIMVHSGSRGLGH 272
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHV 233
QVATDAL MEKAM +D I NDRQLACARI S++ + + K + +
Sbjct: 273 QVATDALFNMEKAMIKDGINVNDRQLACARIASDEGQNYLKGMAAAANYAWVNRSSMTFL 332
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F+TTPDDLDMHVIYDVSHNIAK EEH+V+GK TLLVHRKGSTRAFPPHHPL
Sbjct: 333 ARQAFAKCFHTTPDDLDMHVIYDVSHNIAKIEEHVVNGKLSTLLVHRKGSTRAFPPHHPL 392
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQLTGQPVLIGGTMGTCS+V+TGT +GM ET+G+TCHGAGRALSRAK+RR+L+YQE
Sbjct: 393 IPVDYQLTGQPVLIGGTMGTCSFVMTGTSQGMSETYGTTCHGAGRALSRAKARRSLNYQE 452
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL++L + GISIRVASPKLVMEEAPESYK+VT+VV+TCH GISKK FKLRP+AVIKG
Sbjct: 453 VLDRLNASGISIRVASPKLVMEEAPESYKDVTNVVETCHLAGISKKCFKLRPIAVIKG 510
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 75/79 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LAQS+FDHIPVGVGS+GIIPMNARDL+EALEMGMDWSLREGY WAEDKEHCEEYGRML
Sbjct: 146 ETLAQSLFDHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGRML 205
Query: 529 NADPSKVSMRAKKRGLPQV 547
AD +K+S+RAKKRGLPQ+
Sbjct: 206 QADSNKISLRAKKRGLPQL 224
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 62/78 (79%), Gaps = 3/78 (3%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---R 470
+ E LAQS+FDHIPVGVGS+GIIPMNARDL+EALEMGMDWSLREGY WAEDKEH E R
Sbjct: 144 MKETLAQSLFDHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGR 203
Query: 471 LAQSMFDHIPVGVGSKGI 488
+ Q+ + I + +G+
Sbjct: 204 MLQADSNKISLRAKKRGL 221
>sp|A4S3S3|RTCB_OSTLU tRNA-splicing ligase RtcB homolog OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_25152 PE=3 SV=1
Length = 514
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/481 (52%), Positives = 304/481 (63%), Gaps = 74/481 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSC---RPGMVGGFLPGVKQIANVAAL----------- 46
M V G +VN+ L +L+L+ELR C R G GG+ P VKQIANVAAL
Sbjct: 38 MRVPGEIYVNERLRELVLDELRAYCDEDRRG--GGYSPAVKQIANVAALPGVVRASIALP 95
Query: 47 --------------------------PGIVGRSVG---------LPDVHSVPSTQWLSDN 71
PG VG + L + P + L+ +
Sbjct: 96 DVHSGYGFAIGNVAAFDCGDDDAIVSPGGVGFDINCGVRLLRTNLTEAEVGPVKEALAQS 155
Query: 72 TMR-------SSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC----- 119
S I SP L A + E Y WA K E+ G++
Sbjct: 156 LFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGY-AWAEDKEHTEEYGRMLNADPS 214
Query: 120 -VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 176
V + RG Q+ T AGNHYAEIQ+VDEIYD++AA KMGI+ VGQ+C+MIHSGSRG
Sbjct: 215 KVSARAKKRGL-PQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQICIMIHSGSRG 273
Query: 177 FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH---- 232
GHQVATD+L ME+AM+RD IE NDRQLACA+I+S + + + + ++
Sbjct: 274 LGHQVATDSLTAMERAMERDGIEVNDRQLACAKISSQEGQDYLAAMACAANYAWVNRSSM 333
Query: 233 --VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
+ AFAK F PD+LDMHV+YDVSHNIAK EEH+VDG+ KTLLVHRKGSTRAFPPH
Sbjct: 334 TFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHIVDGEMKTLLVHRKGSTRAFPPH 393
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
HPLIPVDYQ TGQPVLIGGTMGTCSY+LTGTEKGM++TFGSTCHGAGRA SR KSR L
Sbjct: 394 HPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQ 453
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
Y++VL KL+++GI+IRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+K
Sbjct: 454 YEDVLAKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVK 513
Query: 411 G 411
G
Sbjct: 514 G 514
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 74/93 (79%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR AE E LAQS+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY W
Sbjct: 136 LRTNLTEAEVGPVKEALAQSLFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGYAW 195
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEH EEYGRMLNADPSKVS RAKKRGLPQ+
Sbjct: 196 AEDKEHTEEYGRMLNADPSKVSARAKKRGLPQM 228
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E LAQS+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEH E +
Sbjct: 148 VKEALAQSLFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGYAWAEDKEHTEEYGR 207
Query: 474 SMFDHIPVGVGSK 486
M + P V ++
Sbjct: 208 -MLNADPSKVSAR 219
>sp|Q00ZY2|RTCB_OSTTA tRNA-splicing ligase RtcB homolog OS=Ostreococcus tauri
GN=Ot10g01930 PE=3 SV=1
Length = 515
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/480 (52%), Positives = 300/480 (62%), Gaps = 71/480 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGM--VGGFLPGVKQIAN---------------- 42
M V+GV +VN L L+LEEL C GG+ P +KQIAN
Sbjct: 38 MRVDGVVYVNAALRALVLEELAAYCDATAHRGGGYSPALKQIANVAALPGVVGASIALPD 97
Query: 43 -----------VAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNT 72
VAA PG VG + L + P + L+ +
Sbjct: 98 VHSGYGFAIGNVAAFDVGDETSIVSPGGVGFDINCGVRLLRTNLTEAEVGPVKEALAQSL 157
Query: 73 MR-------SSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC------ 119
S I +P L A + E Y WA K E+ G++
Sbjct: 158 FDHIPVGVGSRGIIPTTPAALEAVLEMGMDWSLREGY-AWAEDKEHTEEYGRMLNADPSK 216
Query: 120 VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
V + RG Q+ T AGNHYAEIQ+VDEIYD++AA KMGI+ VGQVC+MIHSGSRG
Sbjct: 217 VSARAKKRGL-PQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQVCIMIHSGSRGL 275
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH----- 232
GHQVATD+L ME+AM+RD IE NDRQLACARI+S + + + + ++
Sbjct: 276 GHQVATDSLTAMERAMERDGIEVNDRQLACARISSQEGQDYLAAMACAANYAWVNRSSMT 335
Query: 233 -VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHH 291
+ AFAK F PD+LDMHV+YDVSHNIAK EEHMVDG+ KTLLVHRKGSTRAFPPHH
Sbjct: 336 FLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHMVDGEMKTLLVHRKGSTRAFPPHH 395
Query: 292 PLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDY 351
PLIPVDYQ TGQPVLIGGTMGTCSY+LTGTEKGM++TFGSTCHGAGRA SR KSR L Y
Sbjct: 396 PLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQY 455
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++VL KL+++GI+IRVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 456 EDVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG 515
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 72/93 (77%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR AE E LAQS+FDHIPVGVGS+GIIP LE LEMGMDWSLREGY W
Sbjct: 137 LRTNLTEAEVGPVKEALAQSLFDHIPVGVGSRGIIPTTPAALEAVLEMGMDWSLREGYAW 196
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEH EEYGRMLNADPSKVS RAKKRGLPQ+
Sbjct: 197 AEDKEHTEEYGRMLNADPSKVSARAKKRGLPQM 229
>sp|Q54Y09|RTCB_DICDI tRNA-splicing ligase RtcB homolog OS=Dictyostelium discoideum
GN=DDB_G0278481 PE=3 SV=1
Length = 508
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/478 (51%), Positives = 296/478 (61%), Gaps = 70/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNV+G+ +VND ++ + EEL + G V GFLP VKQIA
Sbjct: 34 MNVDGMIYVNDSIKDYLYEELEQYSKRG-VSGFLPAVKQIANVASLPGIVGHSLGMPDIH 92
Query: 42 --------NVAAL----------PGIVGRSVGL-----------PDVHSVPS--TQWLSD 70
NVAA PG VG + D+ + Q L D
Sbjct: 93 SGYGFSIGNVAAFDTEDPLSIVSPGGVGFDINCGVRLLRTNLTEKDIEPIKEQLCQSLFD 152
Query: 71 NTMRSSNIWKRSPLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ P+ + N E+ + + E Y W K E+ G++ V
Sbjct: 153 HVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGY-AWVEDKEHCEEYGRMLNADPTKVS 211
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHY E+Q+VDEIYDK AA+KMGI+ GQ+C+MIHSGSRG GH
Sbjct: 212 ERAKKRGL-PQLGTLGAGNHYLEVQVVDEIYDKAAANKMGIDRQGQICIMIHSGSRGLGH 270
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHV 233
QVATD+L MEKAM RD+I ND+QLAC+RINS + + A A F +
Sbjct: 271 QVATDSLTLMEKAMARDHIHLNDKQLACSRINSTEGQDYLSGMAAAANFAWVNRQSMTFL 330
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK FN+TPDDLDMHVIYDVSHNIAK EEH V+G+ K LLVHRKG+TRAF PHHPL
Sbjct: 331 TRQAFAKAFNSTPDDLDMHVIYDVSHNIAKFEEHNVNGRPKKLLVHRKGATRAFAPHHPL 390
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IPVDYQ TGQPVLIGGTMGTCSYVLTGTE GM ETFGSTCHGAGR+ SR KSR NL Y +
Sbjct: 391 IPVDYQFTGQPVLIGGTMGTCSYVLTGTELGMNETFGSTCHGAGRSCSRNKSRNNLSYTD 450
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+++GISIRVASPKLVMEEAPESYK+V V++TCH GISKK+ KLRP+AVIKG
Sbjct: 451 VLDSLQAKGISIRVASPKLVMEEAPESYKDVVQVIETCHKAGISKKSVKLRPIAVIKG 508
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEHCEEYGRML
Sbjct: 144 EQLCQSLFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGRML 203
Query: 529 NADPSKVSMRAKKRGLPQV 547
NADP+KVS RAKKRGLPQ+
Sbjct: 204 NADPTKVSERAKKRGLPQL 222
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEH E +
Sbjct: 142 IKEQLCQSLFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGR 201
Query: 474 SMFDHIPVGVGSK 486
M + P V +
Sbjct: 202 -MLNADPTKVSER 213
>sp|A8JC00|RTCB_CHLRE tRNA-splicing ligase RtcB homolog OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_139581 PE=3 SV=1
Length = 476
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 246/478 (51%), Positives = 296/478 (61%), Gaps = 69/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFL------------PGVKQ--------- 39
M+V G F+VND L+ L+ EEL+ + G GGFL PG+ +
Sbjct: 1 MHVPGTFYVNDALKGLLFEELQQAVVRGDHGGFLPAVKQLANVAALPGIVKRSIALPDVH 60
Query: 40 ------IANVAAL----------PGIVGRSVG---------LPDVHSVPSTQWLSDNTMR 74
I NVAA PG VG + L + P + L+
Sbjct: 61 SGYGFAIGNVAAFDMDNPEAVVSPGGVGFDINCGVRLLRTNLTEAEVGPVREQLAQALFD 120
Query: 75 SSNIWKRS----PLTLGAGNHYAEIQI---VDEIYDKWAASKMGIEDVGQVC------VM 121
+ S P T E+ + + E Y WA K E+ G++ V
Sbjct: 121 HIPVGVGSQGIIPTTAKDMESALELGMDWSLREGY-AWAEDKEHCEEYGRMLNADPRYVS 179
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ RG Q+ T AGNHYAE+Q+VDE+YD AA +MGI+ GQV VMIHSGSRG GH
Sbjct: 180 SRAKKRGL-PQMGTLGAGNHYAEVQVVDEVYDAVAARRMGIDTPGQVVVMIHSGSRGLGH 238
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHV 233
QVATDALV ME+AM RD I TNDRQLACARINS + +A+ K + + +
Sbjct: 239 QVATDALVAMERAMARDGIITNDRQLACARINSEEGQAYLKAMSCAANYAWVNRSSMTFL 298
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AFAK F +TPDDLDMHV+YDVSHNIAK E+H VDG+ + LLVHRKGSTRAFPPHHPL
Sbjct: 299 ARQAFAKIFKSTPDDLDMHVVYDVSHNIAKVEQHCVDGQHRRLLVHRKGSTRAFPPHHPL 358
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
IP DYQL GQPVL+GGTMGT SYVLTGTE+G ETFGSTCHGAGRA SR SR LDYQ+
Sbjct: 359 IPADYQLIGQPVLVGGTMGTSSYVLTGTEQGFTETFGSTCHGAGRARSRNNSRNKLDYQD 418
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+++GI+IRVASPKLVMEEAPESYK+V++VVDTCH GISKK KLRP+AVIKG
Sbjct: 419 VLDNLKAKGIAIRVASPKLVMEEAPESYKDVSEVVDTCHQAGISKKAVKLRPIAVIKG 476
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 76/93 (81%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR AE E+LAQ++FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY W
Sbjct: 98 LRTNLTEAEVGPVREQLAQALFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAW 157
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRMLNADP VS RAKKRGLPQ+
Sbjct: 158 AEDKEHCEEYGRMLNADPRYVSSRAKKRGLPQM 190
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ++FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY WAEDKEH E +
Sbjct: 110 VREQLAQALFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAWAEDKEHCEEYGR 169
Query: 474 SMFDHIPVGVGSK 486
M + P V S+
Sbjct: 170 -MLNADPRYVSSR 181
>sp|Q4N1R8|RTCB_THEPA tRNA-splicing ligase RtcB homolog OS=Theileria parva GN=TP04_0661
PE=3 SV=1
Length = 507
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/477 (49%), Positives = 295/477 (61%), Gaps = 69/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
MNVEG F ND+L KL+ +EL+ G FLP +KQ+ANVAALPGIV
Sbjct: 34 MNVEGHLFANDNLSKLLFDELKQFTDDP--GSFLPALKQLANVAALPGIVKSSIALPDAH 91
Query: 51 ---GRSVG------LPDVHSVPS-----------TQWLSDNTMRS----------SNIWK 80
G S+G + + +S+ S + L N + ++
Sbjct: 92 SGYGFSIGNVAAFDMDNCNSIVSPGGVGFDINCGVRLLRTNLLYKDIEPIKEQLVQKLFD 151
Query: 81 RSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQV------CVMI 122
P+ +G G + +D I + WA K ED G++ V
Sbjct: 152 LIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTVVSY 211
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHY E+Q+V+EIYD+++A MGI+ +GQVC+M HSGSRG GHQ
Sbjct: 212 RAKKRGLS-QIGTLGAGNHYGEVQVVEEIYDEYSAKVMGIDRIGQVCIMTHSGSRGLGHQ 270
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVI 234
VA+DALV ME ++ + I+ ND+QLACARINS++ K + K + + H+
Sbjct: 271 VASDALVDMENSLNKSKIKVNDKQLACARINSDEGKKYLKGMAAASNYAWVNRSVMTHLT 330
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF + + DDLDMHV+YDVSHNIAK E+H+VDGK K LL+HRKGSTRAFPP+HPLI
Sbjct: 331 RKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHIVDGKLKRLLLHRKGSTRAFPPYHPLI 390
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
D+Q GQPVL+GGTMGTCSYVLTGT+ M T GSTCHG+GR LSR KSRR LDY EV
Sbjct: 391 SADFQHIGQPVLVGGTMGTCSYVLTGTQLAMDLTLGSTCHGSGRTLSRNKSRRILDYNEV 450
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
LN L+ +GISIRVASPKLV EEAPESYK+V++VV TCH GISKK KLRPVAVIKG
Sbjct: 451 LNNLKEKGISIRVASPKLVTEEAPESYKDVSEVVQTCHDSGISKKCVKLRPVAVIKG 507
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR ++ + + E+L Q +FD IPVGVG +G IP + DL+ LE GMDWS+ GY W
Sbjct: 129 LRTNLLYKDIEPIKEQLVQKLFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCE++GRM+ ADP+ VS RAKKRGL Q+
Sbjct: 189 AEDKEHCEDFGRMIQADPTVVSYRAKKRGLSQI 221
>sp|B0XKF3|RTCB2_CULQU tRNA-splicing ligase RtcB homolog 2 OS=Culex quinquefasciatus
GN=CPIJ019543 PE=3 SV=1
Length = 502
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/420 (54%), Positives = 275/420 (65%), Gaps = 71/420 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
MNVEG+F+ N LEKLM +ELRNSCRPGM GGF LPG+
Sbjct: 31 MNVEGIFYANSRLEKLMFDELRNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIH 90
Query: 39 -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
I N+AA PG VG + V + + + D + +++
Sbjct: 91 SGYGFAIGNMAAFDMSDPTSIVSPGGVGFDINC-GVRLLRTNLFEKDVKPVQEQLAQSLF 149
Query: 80 KRSPLTLGA------GNHYAEIQI-------VDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ H E + + E Y WA K E+ G++ V
Sbjct: 150 DHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGY-VWAEDKEHCEEYGRMLTADPSKV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ + RG Q+ T AGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 209 SMRAKKRGL-PQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQVATDALV+MEKAMKRD IETNDRQLACARINS + + + K + + ++
Sbjct: 268 HQVATDALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSAAANFAWVNRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLVHRKGSTRAFPPHHP
Sbjct: 328 LTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLVHRKGSTRAFPPHHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
LIPVDYQLTGQPVL+GG+MGTCS+VLTGTEKGM ETFGSTCHGAGR+LSRAKSRRNLDY+
Sbjct: 388 LIPVDYQLTGQPVLVGGSMGTCSFVLTGTEKGMAETFGSTCHGAGRSLSRAKSRRNLDYR 447
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 81/93 (87%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR + K E+LAQS+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+W
Sbjct: 128 LRTNLFEKDVKPVQEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCEEYGRML ADPSKVSMRAKKRGLPQ+
Sbjct: 188 AEDKEHCEEYGRMLTADPSKVSMRAKKRGLPQL 220
>sp|Q8IIU6|RTCB_PLAF7 tRNA-splicing ligase RtcB homolog OS=Plasmodium falciparum (isolate
3D7) GN=PF11_0068 PE=3 SV=1
Length = 506
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 236/479 (49%), Positives = 284/479 (59%), Gaps = 72/479 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIA------------------- 41
MNVEG +VN+ L+ L+ EE+ + FLP V QIA
Sbjct: 32 MNVEGHIYVNEKLKTLLDEEIA-TYELNKNSTFLPAVMQIANVSTLPGIVKASIALPDVH 90
Query: 42 --------NVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNI----W 79
NVAA PG VG + V + + + D + + +
Sbjct: 91 AGYGFSIGNVAAFDMDNEKAIVSPGGVGFDINC-GVRLIRTNLFYEDIKPKQEELTQLLF 149
Query: 80 KRSPLTLGAGNHYAEIQ-------------IVDEIYDKWAASKMGIEDVGQVC------V 120
P+ +G+ Q V E Y W K+ ED G+ V
Sbjct: 150 NHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYS-WIEDKLNCEDNGRSLYADSNFV 208
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
I + RG Q+ T AGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 209 SIRAKKRGIT-QMGTLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------ 232
HQ+ATDAL+ MEK+M + I D+QLAC I+S + + + K + + ++
Sbjct: 268 HQIATDALIDMEKSMNKYKINVIDKQLACTPIHSKEGQNYLKAMGSACNFAWINRSSMTF 327
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
+ AF+K FN +PDDLDMHVIYDVSHNIAK EEH +DGK K LLVHRKGSTRAFPP HP
Sbjct: 328 LARQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHYIDGKIKKLLVHRKGSTRAFPPFHP 387
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
L+P+DYQ GQP+LIGGTMGT SYVLTG EK MQ TFGSTCHGAGRALSR KSR L Y
Sbjct: 388 LVPLDYQYCGQPILIGGTMGTYSYVLTGNEKAMQATFGSTCHGAGRALSRNKSRNTLSYL 447
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+VLNKL+ Q ISIRVASPKL+MEEAPESYKNV DVV TCH GIS K F+L+PVAVIKG
Sbjct: 448 DVLNKLKEQNISIRVASPKLIMEEAPESYKNVCDVVQTCHDAGISNKCFRLKPVAVIKG 506
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W
Sbjct: 128 IRTNLFYEDIKPKQEELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L AD + VS+RAKKRG+ Q+
Sbjct: 188 IEDKLNCEDNGRSLYADSNFVSIRAKKRGITQM 220
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK + E +S+
Sbjct: 142 EELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSL 201
Query: 476 F---DHIPVGVGSKGIIPM 491
+ + + + +GI M
Sbjct: 202 YADSNFVSIRAKKRGITQM 220
>sp|Q4U923|RTCB_THEAN tRNA-splicing ligase RtcB homolog OS=Theileria annulata GN=TA10620
PE=3 SV=1
Length = 515
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 232/485 (47%), Positives = 292/485 (60%), Gaps = 77/485 (15%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVA----------ALPGI- 49
MNVEG F ND+L KL+ +EL+ G FLP +KQ+ANVA ALP
Sbjct: 34 MNVEGHLFANDNLSKLLFDELKQFTDDP--GSFLPALKQLANVAALPGIVKSSIALPDAH 91
Query: 50 --VGRSVG------LPDVHSVPS-----------TQWLSDNTMRS----------SNIWK 80
G S+G + + +S+ S + L N + ++
Sbjct: 92 SGYGFSIGNVAAFDMDNCNSIVSPGGVGFDINCGVRLLRTNLLYKDIEPIKEQLVQKLFD 151
Query: 81 RSPLTLGA-GNHYAEIQIVDEIYD-----------KWAASKMGIEDVGQV------CVMI 122
P+ +G G + +D I + WA K ED G++ V
Sbjct: 152 LIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTVVSY 211
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQI--------VDEIYDKWAASKMGIEDVGQVCVMIHS 172
+ RG Q+ T AGNHY E+Q+ V+EIYD+++A MGI+ +GQVC+M HS
Sbjct: 212 RAKKRGLS-QIGTLGAGNHYGEVQVSIYSNIYVVEEIYDEYSAKVMGIDRIGQVCIMTHS 270
Query: 173 GSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD----- 227
GSRG GHQVA+DALV ME ++ + I+ ND+QLACARINS++ K + K +
Sbjct: 271 GSRGLGHQVASDALVDMENSLNKSKIKVNDKQLACARINSDEGKKYLKGMAAASNYAWVN 330
Query: 228 -DLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRA 286
+ H+ AF + + DDLDMHV+YDVSHNIAK E+HMVDGK K LL+HRKGSTRA
Sbjct: 331 RSVMTHLTRKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHMVDGKLKRLLLHRKGSTRA 390
Query: 287 FPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSR 346
FPP+HPLI D+Q GQPVL+GGTMGTCSYVLTGT+ M T GSTCHG+GR LSR KSR
Sbjct: 391 FPPYHPLISADFQHIGQPVLVGGTMGTCSYVLTGTQLAMDLTLGSTCHGSGRTLSRNKSR 450
Query: 347 RNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPV 406
R LDY EVLN L+ +GISIRVASPKLV EEAPESYK+V++VV TCH GISKK KLRPV
Sbjct: 451 RVLDYNEVLNNLKEKGISIRVASPKLVTEEAPESYKDVSEVVQTCHDSGISKKCVKLRPV 510
Query: 407 AVIKG 411
AVIKG
Sbjct: 511 AVIKG 515
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR ++ + + E+L Q +FD IPVGVG +G IP + DL+ LE GMDWS+ GY W
Sbjct: 129 LRTNLLYKDIEPIKEQLVQKLFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
AEDKEHCE++GRM+ ADP+ VS RAKKRGL Q+
Sbjct: 189 AEDKEHCEDFGRMIQADPTVVSYRAKKRGLSQI 221
>sp|Q4YUZ9|RTCB_PLABA tRNA-splicing ligase RtcB homolog OS=Plasmodium berghei (strain
Anka) GN=PB000816.02.0 PE=3 SV=1
Length = 505
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 287/477 (60%), Gaps = 69/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELR----NSCR---------------PGMVGG--FLPGVK- 38
MNVEG +VN+ L+ L+ EE++ N C PG+V LP V
Sbjct: 32 MNVEGNIYVNEKLKLLIDEEIKMYQLNKCSTFLPAVIQIANVSTLPGIVKASIALPXVHA 91
Query: 39 ----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNI----WK 80
I NVAA PG VG + V + + + +D + + +
Sbjct: 92 GYGFSIGNVAAFDMNNEKAVISPGGVGFDINC-GVRLIRTNLFYNDIKDKQEELAQLLFN 150
Query: 81 RSPLTLGAGNHYAEIQ-------------IVDEIYDKWAASKMGIEDVGQVC------VM 121
P+ +G+ Q V E Y W K+ ED G+ V
Sbjct: 151 HIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYS-WIEDKLNCEDNGRSLYANSDYVS 209
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQIVDEIY+K +A MGIE QVC+MIHSGSRG GH
Sbjct: 210 VRAKKRGIT-QMGTLGAGNHYAEIQIVDEIYNKKSAKLMGIEKKNQVCIMIHSGSRGLGH 268
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD-----DLDMHVI 234
Q+ATDAL++MEK M + I D+QLAC I+S + + + K + M +
Sbjct: 269 QIATDALIEMEKIMSKYKINVIDKQLACTPIHSPEGQNYLKAMGAACNFAWINRSSMTFL 328
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
AF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLVHRKGSTRAFPP HPL+
Sbjct: 329 AQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLVHRKGSTRAFPPFHPLV 388
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P+DYQ GQP+LIGGTMGT SYVLTGTEK M+ TFGSTCHGAGRALSR KSR L Y +V
Sbjct: 389 PLDYQYCGQPILIGGTMGTYSYVLTGTEKAMENTFGSTCHGAGRALSRNKSRNALSYSDV 448
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ L+ + ISIRVASPKL+MEEAPESYKNV++VV TCH GIS K F+LRPVAVIKG
Sbjct: 449 LSNLKEKNISIRVASPKLIMEEAPESYKNVSEVVQTCHDSGISNKCFRLRPVAVIKG 505
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W
Sbjct: 128 IRTNLFYNDIKDKQEELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L A+ VS+RAKKRG+ Q+
Sbjct: 188 IEDKLNCEDNGRSLYANSDYVSVRAKKRGITQM 220
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK + E +S+
Sbjct: 142 EELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSL 201
Query: 476 F---DHIPVGVGSKGIIPM 491
+ D++ V +GI M
Sbjct: 202 YANSDYVSVRAKKRGITQM 220
>sp|B3L4K9|RTCB_PLAKH tRNA-splicing ligase RtcB homolog OS=Plasmodium knowlesi (strain H)
GN=PKH_090290 PE=3 SV=1
Length = 511
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 229/477 (48%), Positives = 293/477 (61%), Gaps = 68/477 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEEL------RNSC-------------RPGMVGG--FLPGVK- 38
MNVEG +VND L+ L+ +E+ RNS PG+V LP V
Sbjct: 37 MNVEGHMYVNDKLKHLIDDEIEMYQLNRNSTFLPAVVQIANVSTLPGIVKASIALPDVHA 96
Query: 39 ----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKR--S 82
I NVAA PG VG + V + + + D + + + +
Sbjct: 97 GYGFSIGNVAAFDMSNEKAIISPGGVGFDINC-GVRLIRTNLFYEDIKDKQDELAQLLFN 155
Query: 83 PLTLGAGNHYAEIQIVDEIYDK--------------WAASKMGIEDVGQVC------VMI 122
+ +G G+ + D++ + W K+ ED G+ V +
Sbjct: 156 NIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSFYADSNYVSV 215
Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
+ RG Q+ T AGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG GHQ
Sbjct: 216 RAKKRGIT-QMGTLGAGNHYAEIQIVDEIYDKRSAKLMGIEKKNQVCIMIHSGSRGLGHQ 274
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------VI 234
+ATDAL++MEK+M + I+ D+QLAC I+S + + + K + + ++ +
Sbjct: 275 IATDALIEMEKSMTKYKIDVIDKQLACTPIHSKEGQNYLKAMGSACNFAWINRSSMTFLA 334
Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
FAK FN +PDDLDMHVIYD+SHNIAK E+H+VDGK K LLVHRKGSTRAFPP HP +
Sbjct: 335 RQTFAKIFNQSPDDLDMHVIYDISHNIAKMEDHLVDGKMKKLLVHRKGSTRAFPPFHPAV 394
Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
P+DYQ GQP+LIGGTMGT SYVLTGT+K M+ TFGSTCHGAGRALSR KSR L+Y +V
Sbjct: 395 PLDYQYCGQPILIGGTMGTYSYVLTGTDKAMETTFGSTCHGAGRALSRNKSRNTLNYMDV 454
Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L K++ + ISIRVASPKL+MEEAPESYKNV++VV+TCH GIS K F+L+PVAVIKG
Sbjct: 455 LQKMKEENISIRVASPKLIMEEAPESYKNVSEVVNTCHEAGISNKCFRLKPVAVIKG 511
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 65/93 (69%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ + LAQ +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W
Sbjct: 133 IRTNLFYEDIKDKQDELAQLLFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAW 192
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR AD + VS+RAKKRG+ Q+
Sbjct: 193 VEDKLNCEDNGRSFYADSNYVSVRAKKRGITQM 225
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
+ LAQ +F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK + E +S
Sbjct: 147 DELAQLLFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSF 206
Query: 476 F---DHIPVGVGSKGIIPM 491
+ +++ V +GI M
Sbjct: 207 YADSNYVSVRAKKRGITQM 225
>sp|Q7RI54|RTCB_PLAYO tRNA-splicing ligase RtcB homolog OS=Plasmodium yoelii yoelii
GN=PY03776 PE=3 SV=1
Length = 507
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 233/478 (48%), Positives = 286/478 (59%), Gaps = 70/478 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRN-------------------SCRPGMVGG--FLPGVK- 38
MNVEG +VN+ L+ L+ EE++ S PG+V LP V
Sbjct: 33 MNVEGNMYVNEKLKLLIDEEIKMYQLNKSSTFLPAVIQIANVSTLPGIVKASIALPDVHA 92
Query: 39 ----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNI----WK 80
I NVAA PG VG + V + + + +D + + +
Sbjct: 93 GYGFSIGNVAAFDMNNEKAVISPGGVGFDINC-GVRLIRTNLFYNDIKDKQEELAQLLFN 151
Query: 81 RSPLTLGAGNHYAEIQ-------------IVDEIYDKWAASKMGIEDVGQVC------VM 121
P+ +G+ Q V E Y W K+ ED G+ V
Sbjct: 152 HIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYS-WIEDKLNCEDNGRSLYANSDYVS 210
Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
+ + RG Q+ T AGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG GH
Sbjct: 211 VRAKKRGIT-QMGTLGAGNHYAEIQIVDEIYDKKSAKLMGIEKKNQVCIMIHSGSRGLGH 269
Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHV 233
Q+ATDAL++MEK M + I D+QLAC I+S + + + K F +
Sbjct: 270 QIATDALIEMEKVMSKYKINVIDKQLACTPIHSPEGQNYLKAMGAACNFAWINRSSMTFL 329
Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
AF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLVHRKGSTRAFPP HPL
Sbjct: 330 ARQAFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLVHRKGSTRAFPPFHPL 389
Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
+P+DYQ GQP+LIGGTMGT SYVLTGTEK M+ TFGSTCHGAGRALSR KSR +L Y +
Sbjct: 390 VPLDYQYCGQPILIGGTMGTYSYVLTGTEKAMENTFGSTCHGAGRALSRNKSRNSLSYSD 449
Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
VL+ L+ + ISIRVASPKL+MEEAPESYKNV++VV TCH GIS K F+LRPVAVIKG
Sbjct: 450 VLSNLKEKNISIRVASPKLIMEEAPESYKNVSEVVQTCHDSGISNKAFRLRPVAVIKG 507
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K+ E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W
Sbjct: 129 IRTNLFYNDIKDKQEELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSW 188
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDK +CE+ GR L A+ VS+RAKKRG+ Q+
Sbjct: 189 IEDKLNCEDNGRSLYANSDYVSVRAKKRGITQM 221
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E LAQ +F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK + E +S+
Sbjct: 143 EELAQLLFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSL 202
Query: 476 F---DHIPVGVGSKGIIPM 491
+ D++ V +GI M
Sbjct: 203 YANSDYVSVRAKKRGITQM 221
>sp|B8LBM8|RTCB_THAPS tRNA-splicing ligase RtcB homolog OS=Thalassiosira pseudonana
GN=THAPSDRAFT_41953 PE=3 SV=1
Length = 480
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/481 (46%), Positives = 294/481 (61%), Gaps = 71/481 (14%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSC---RPGMVGGFLPGVKQIANVA----------ALP 47
M V FVN+ L+ L+++EL ++C R F+P ++Q ANVA A+P
Sbjct: 1 MKVPAEIFVNNDLQTLLVQELHDTCCGSREEADSAFIPALRQAANVAALPGIVKASLAMP 60
Query: 48 GI---VGRSVG------LPDVHSVPS-------------------TQWLSDNTMR---SS 76
+ G +G + D +V S T+ + ++R +
Sbjct: 61 DVHSGYGFCIGNVAAFDMDDPQAVISPGGVGFDINCGVRLIRTNLTEKDVEGSVREELAE 120
Query: 77 NIWKRSPLTLG-AGNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQV------ 118
+++ P+ +G +G I +D++ W K E+ G +
Sbjct: 121 ALFRNIPVGVGVSGGIPCSIDDLDQLLRNGVDWAIEKGYAWEEDKDHCEENGCMETADPN 180
Query: 119 CVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 176
CV + RG Q+ T AGNHY EIQ+VDE+Y+ AA MGI VGQVC+MIH+GSRG
Sbjct: 181 CVSKRAKKRGL-KQLGTLGAGNHYTEIQVVDEVYNTEAAKIMGIGTVGQVCIMIHTGSRG 239
Query: 177 FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLD 230
GHQVATDAL ME+AM RD I+ NDRQL+CARI+S + + + + +
Sbjct: 240 LGHQVATDALQVMEEAMCRDAIDLNDRQLSCARISSKEGREYLAAMSAAANFAWVNRSCI 299
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
++ AF++ F DD+DMH++YDV HNIAK E+H+VDG+QKTLLVHRKGSTRA+PP
Sbjct: 300 TYLARKAFSEVFQRESDDMDMHLVYDVCHNIAKVEQHIVDGEQKTLLVHRKGSTRAYPPC 359
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
HP IP DYQ GQPVLIGGTMGTCSYVL GT+KGM ETFGSTCHGAGRALSR +SR LD
Sbjct: 360 HPDIPKDYQTIGQPVLIGGTMGTCSYVLVGTDKGMAETFGSTCHGAGRALSRNQSRIKLD 419
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
+ +VLNKL+ GI+IRVASPKLV EEAPESYKNV DV++TC GIS+K KLRP+AVIK
Sbjct: 420 HNQVLNKLKEDGIAIRVASPKLVTEEAPESYKNVCDVIETCQVAGISEKVVKLRPIAVIK 479
Query: 411 G 411
G
Sbjct: 480 G 480
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 58/79 (73%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E LA+++F +IPVGVG G IP + DL++ L G+DW++ +GY W EDK+HCEE G M
Sbjct: 116 EELAEALFRNIPVGVGVSGGIPCSIDDLDQLLRNGVDWAIEKGYAWEEDKDHCEENGCME 175
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP+ VS RAKKRGL Q+
Sbjct: 176 TADPNCVSKRAKKRGLKQL 194
>sp|B0EAV2|RTCB1_ENTDS tRNA-splicing ligase RtcB homolog 1 OS=Entamoeba dispar (strain
ATCC PRA-260 / SAW760) GN=EDI_022970 PE=3 SV=1
Length = 535
Score = 295 bits (754), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 182/479 (37%), Positives = 251/479 (52%), Gaps = 79/479 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
MN + F ND L L+ E+ + + V+Q AN A LPG+V
Sbjct: 68 MNGDAKIFCNDDLFNLLTFEMIKD----ISNNYPSCVRQTANAATLPGVVASLAMPDAHS 123
Query: 51 --GRSVG------LPDVHSV-----------PSTQWLSDNTMR----------SSNIWKR 81
G S+G L + +V + + N R + ++K+
Sbjct: 124 GYGFSIGGVVAMRLDNSEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKSRLADELFKQ 183
Query: 82 SPLTLGAGNHYAEIQIVDEIYDK---------------WAASKMGIEDVGQVC------V 120
P +G A+I E +D W E+ G++ V
Sbjct: 184 IPSGVGT---KAQIAFSPEDFDSIMTEGLEFLVKNGYAWEEDLSHCEEHGKIANADPSLV 240
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ SRG+ QV T +GNHY E+Q+VDEI D AA MGI +VGQVC+M+H GSRG G
Sbjct: 241 SKSAKSRGY-KQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGINEVGQVCIMVHCGSRGLG 299
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQV D + + MK D+QL NS + + N + + +
Sbjct: 300 HQVCQDYI---DLCMKSGICNPIDKQLTGVPFNSPIGQQYYSAMNCCANFAFANRGMITY 356
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
I AF P +DMH++YDV HNIAK EEH VD K+ +VHRKG+TRAFPP HP
Sbjct: 357 RIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHEVDNKKVQCIVHRKGATRAFPPQHP 416
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
I DY+ GQP +IGG+MGTCSYVL GT++GM+++FGSTCHGAGR +SR K+ NL +
Sbjct: 417 DISEDYKEIGQPAIIGGSMGTCSYVLVGTQEGMKKSFGSTCHGAGRKMSRVKAMDNLTSK 476
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V+N+++ GI +R+ PKL EEA E+YK+VT+VV+TC A GISK +L+P+ VIKG
Sbjct: 477 DVINRIKEMGIELRITDPKLAAEEADEAYKDVTEVVETCQAAGISKIVLRLKPLIVIKG 535
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
++H RLA +F IP GVG+K I + D + + G+++ ++ GY W ED HCEE+
Sbjct: 170 EQHKSRLADELFKQIPSGVGTKAQIAFSPEDFDSIMTEGLEFLVKNGYAWEEDLSHCEEH 229
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G++ NADPS VS AK RG QV
Sbjct: 230 GKIANADPSLVSKSAKSRGYKQV 252
>sp|C4M6T2|RTCB2_ENTHI tRNA-splicing ligase RtcB homolog 2 OS=Entamoeba histolytica
GN=EHI_184560 PE=3 SV=1
Length = 535
Score = 293 bits (749), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 181/479 (37%), Positives = 249/479 (51%), Gaps = 79/479 (16%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGR-------- 52
MN + F ND L L+ E+ + + V+Q AN A LPG+VG
Sbjct: 68 MNGDAKIFCNDDLLNLLTFEMIKD----ISNNYPSCVRQTANAATLPGVVGSLAMPDAHS 123
Query: 53 ----SVG------LPDVHSV-----------PSTQWLSDNTMR----------SSNIWKR 81
S+G L D +V + + N R + ++K+
Sbjct: 124 GYGFSIGGVVAMRLDDPEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKARLADELFKQ 183
Query: 82 SPLTLGAGNHYAEIQIVDEIYDK---------------WAASKMGIEDVGQVC------V 120
P +G A+I E +D W E+ G++ V
Sbjct: 184 IPSGVGT---QAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSLV 240
Query: 121 MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 178
+ SRG+ QV T +GNHY E+Q+VDEI D AA MGI ++GQVC+M+H GSRG G
Sbjct: 241 SNSAKSRGY-KQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGITEIGQVCIMVHCGSRGLG 299
Query: 179 HQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMH 232
HQV D + MK D+QL NS + + N + + +
Sbjct: 300 HQVCQDYI---NLCMKSGICNPVDKQLTGVPFNSPIGQQYYSAMNCCANFAFANRGMITY 356
Query: 233 VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHP 292
I AF P +DMH++YDV HNIAK EEH VD K+ +VHRKG+TRAFPP HP
Sbjct: 357 RIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHDVDNKKVQCIVHRKGATRAFPPQHP 416
Query: 293 LIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQ 352
I DY+ GQP +IGG+MGTCSYVL GT++GM+++FGSTCHGAGR +SR K+ NL +
Sbjct: 417 DISEDYKEIGQPAIIGGSMGTCSYVLVGTQEGMKKSFGSTCHGAGRKMSRTKAMDNLTSK 476
Query: 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V+N+++ GI +R+ PKL EEA E+YK+VT+VV+TC A ISK +L+P+ VIKG
Sbjct: 477 DVINRMKEMGIELRITDPKLAAEEADEAYKDVTEVVETCQAANISKIVLRLKPLIVIKG 535
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 425 HIPVGVGSKGIIPMNARDLEEAL---EMGMDWS-----LREGYIWAEDKEHFERLAQSMF 476
H G G++ M D E + +G D + +R + ++H RLA +F
Sbjct: 122 HSGYGFSIGGVVAMRLDDPEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKARLADELF 181
Query: 477 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 536
IP GVG++ I + D + ++ G+++ + GY W ED HCEE+G++ NADPS VS
Sbjct: 182 KQIPSGVGTQAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSLVS 241
Query: 537 MRAKKRGLPQV 547
AK RG QV
Sbjct: 242 NSAKSRGYKQV 252
>sp|C4M244|RTCB1_ENTHI tRNA-splicing ligase RtcB homolog 1 OS=Entamoeba histolytica
GN=EHI_169260 PE=3 SV=1
Length = 524
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 199/301 (66%), Gaps = 14/301 (4%)
Query: 121 MIHSGSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
++ +RG G +Q+ T +GNHY EIQ VDEI DK AA +MGI +GQ+C+MIH GSRG
Sbjct: 228 LVSQKARGRGRNQLGTLGSGNHYLEIQRVDEIMDKEAAKQMGISHIGQICIMIHCGSRGL 287
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD-------LD 230
GHQV D V M + + N D QL S+ + + K N + +
Sbjct: 288 GHQVCQD-FVDM--CVSQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAANYAFANRGMIS 344
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
HV F + F +P DLDMH++YDV HNIAK E H+VDGK+ +VHRKG+TRAF P
Sbjct: 345 YHV-RCTFEQVFQKSPKDLDMHLVYDVCHNIAKEESHLVDGKEIKCIVHRKGATRAFAPL 403
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
+P+IP Y+ GQP +IGG+MGTCSY+L GT++GM+++FGSTCHGAGR +SR + +N+
Sbjct: 404 NPVIPDAYKPIGQPAIIGGSMGTCSYMLVGTQEGMKKSFGSTCHGAGRKISRVNAMKNIS 463
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ +++ +GI +R+ PKL EEA ++YK+V +VV+TC + GIS+ FKL+P+ V+K
Sbjct: 464 SDSVVEEMKKKGIELRITDPKLAAEEADDAYKDVKEVVETCQSAGISRIVFKLKPLIVVK 523
Query: 411 G 411
G
Sbjct: 524 G 524
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H LA ++ +IP GVG+ + +++ E + G++W +++G W ED +CEE GR
Sbjct: 161 HLAELADALQKNIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCEENGR 220
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
++N+DP VS +A+ RG Q+
Sbjct: 221 IINSDPHLVSQKARGRGRNQL 241
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M + F N+ L +L++ EL N +PG F V+Q ANVA LPG++ +S+ +PD H
Sbjct: 56 MKNDAEMFCNEDLFELLMNELLNE-QPG--ASFSSCVRQTANVATLPGVI-KSLAMPDAH 111
Query: 61 S 61
S
Sbjct: 112 S 112
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++ +IP GVG+ + +++ E + G++W +++G W ED + E
Sbjct: 165 LADALQKNIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCE 216
>sp|Q6LXF9|RTCB_METMP tRNA-splicing ligase RtcB OS=Methanococcus maripaludis (strain S2 /
LL) GN=rtcB PE=3 SV=1
Length = 480
Score = 279 bits (714), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 180/466 (38%), Positives = 248/466 (53%), Gaps = 77/466 (16%)
Query: 10 NDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHS-------- 61
N +L++L+ E L+ +QIANVA LPGI S+ +PD H
Sbjct: 28 NVYLDELLFENLQEDV-----------FEQIANVACLPGIQKYSLAMPDCHYGYGFCIGG 76
Query: 62 --------------------------VPSTQWLSDNTMR----SSNIWKRSPLTLGAGNH 91
V + +D T + S I+K P LG+
Sbjct: 77 VAAFDEVTGVISPGGVGFDINCGVRLVKTNLTKNDVTPKLKELLSEIFKNVPSGLGSKGK 136
Query: 92 YA----EIQIVDEIYDKWAASK--------MGIEDVGQV------CVMIHSGSRGFGHQV 133
EI V E WA + IE+ G++ V ++ RG Q+
Sbjct: 137 IRITKDEIDSVLEEGVSWAVEEEYGWERDIKHIEEHGKMKEADPTLVSDNAKKRGL-PQL 195
Query: 134 ATAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEK 191
+ G NH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG GHQ+ D L ME
Sbjct: 196 GSLGSGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLGHQICADYLRYMEN 254
Query: 192 AMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTT 245
A K+ NI+ DRQLACA INS + + + K + + L H I ++F F T+
Sbjct: 255 AAKKYNIKLPDRQLACAPINSEEGQKYFKAMSCGANYAWANRQLITHWIRESFESVFKTS 314
Query: 246 PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
+DL+M +IYDV+HNIAK E+H+VDG K ++VHRKG+TRAF P H IP DY GQPV
Sbjct: 315 AEDLEMDIIYDVAHNIAKKEQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPV 374
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
+I G MGT SY++ GTEK M++TFGST HGAGRALSR K+ + EV L+ +GI +
Sbjct: 375 IIPGDMGTASYLMHGTEKAMEQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILV 434
Query: 366 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++ EE PE+YK++ +V D CH GIS K K++P+ V+KG
Sbjct: 435 MADSKGVIAEECPEAYKDIENVADICHDSGISLKVAKMKPMGVVKG 480
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L +F ++P G+GSKG I + +++ LE G+ W++ E Y W D +H EE+G+M
Sbjct: 116 LKELLSEIFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWAVEEEYGWERDIKHIEEHGKM 175
Query: 528 LNADPSKVSMRAKKRGLPQV 547
ADP+ VS AKKRGLPQ+
Sbjct: 176 KEADPTLVSDNAKKRGLPQL 195
>sp|O29399|RTCB_ARCFU tRNA-splicing ligase RtcB OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rtcB PE=3 SV=1
Length = 482
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD+++D+ A+K GIE+ G V VMIH GSRG GHQV TD L +++A+K+
Sbjct: 202 SGNHFLEVQYVDKVFDEKVAAKFGIEE-GMVTVMIHCGSRGLGHQVCTDFLEVLDRAVKK 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA INS + + + + + + H + + F K + DDL
Sbjct: 261 YGIKLPDRQLACAPINSKEGQDYFAGMAASANYAWCNRQIIAHWVRETFQKVMGMSEDDL 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNIAK EEH VDGK+ L VHRKG+TRAF P +P DY+ GQPVLI G
Sbjct: 321 GMELVYDVAHNIAKFEEHRVDGKKMKLCVHRKGATRAFGPGLKEVPEDYRDVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L GTEK M+ETFGSTCHG+GR +SRA ++R L V LE +GI +R
Sbjct: 381 SMGTPSYILVGTEKAMEETFGSTCHGSGRVMSRAAAKRKLRGNVVKQNLERKGIYVRATH 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L+ EEAPE+YK DVVD H GISK +LRP+ V KG
Sbjct: 441 GALLAEEAPEAYKLSDDVVDVVHRAGISKLVARLRPLGVAKG 482
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
K ++L +F +P GVGS+G + ++ R+L+E G W++ GY + D +HCEE
Sbjct: 115 KPLIKKLIDELFVAVPSGVGSEGRLRVSDRELDEIFVEGARWAVENGYGYERDLKHCEEE 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G + A P VS +A+ RG PQ+
Sbjct: 175 GALEGARPEVVSKKARDRGRPQL 197
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++L +F +P GVGS+G + ++ R+L+E G W++ GY + D +H E
Sbjct: 117 LIKKLIDELFVAVPSGVGSEGRLRVSDRELDEIFVEGARWAVENGYGYERDLKHCE 172
>sp|B0EIW5|RTCB2_ENTDS tRNA-splicing ligase RtcB homolog 2 OS=Entamoeba dispar (strain
ATCC PRA-260 / SAW760) GN=EDI_260790 PE=3 SV=1
Length = 524
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 197/301 (65%), Gaps = 14/301 (4%)
Query: 121 MIHSGSRGFG-HQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177
++ +RG G +Q+ T +GNHY EIQ VDEI D AA +MGI +GQ+C+MIH GSRG
Sbjct: 228 LVSQKARGRGRNQLGTLGSGNHYLEIQRVDEIMDMEAAKQMGISHIGQICIMIHCGSRGL 287
Query: 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDD-------LD 230
GHQV D + + + + N D QL S+ + + K N + +
Sbjct: 288 GHQVCQDFV---DLCVNQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAANYAFANRGMIS 344
Query: 231 MHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH 290
HV F + F +P DLDMH++YDV HNIAK E H++DG + +VHRKG+TRAF P
Sbjct: 345 YHV-RCTFEQVFKKSPKDLDMHLVYDVCHNIAKEEIHLIDGNEIKCIVHRKGATRAFAPL 403
Query: 291 HPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLD 350
+P+IP Y+ GQP +IGG+MGTCSY+L GT++GM++TFGSTCHGAGR +SR K+ +++
Sbjct: 404 NPVIPDAYKPIGQPAIIGGSMGTCSYMLVGTQEGMKKTFGSTCHGAGRKISRVKAMKDIS 463
Query: 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIK 410
V+ +++ +GI +R+ PKL EEA +YK+V +VV+TC + GISK FKL+P+ V+K
Sbjct: 464 SNSVVEEMKKKGIELRITDPKLAAEEADGAYKDVKEVVETCQSAGISKIVFKLKPLIVVK 523
Query: 411 G 411
G
Sbjct: 524 G 524
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 467 HFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR 526
H LA ++ +IP GVG+ + +++ E + G++W +++ W ED +CEE GR
Sbjct: 161 HLVELADALQKNIPSGVGTTSNQTLTEKEMNEIMNEGLEWLVKKDLAWKEDLVYCEENGR 220
Query: 527 MLNADPSKVSMRAKKRGLPQV 547
++N+DP VS +A+ RG Q+
Sbjct: 221 IINSDPHLVSQKARGRGRNQL 241
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M + F ND L +L++ EL N +PG F V+Q ANVA LPG++ +S+ +PD H
Sbjct: 56 MKNDAEMFCNDDLFELLMNELLNE-QPG--ASFSSCVRQTANVATLPGVI-KSLAMPDAH 111
Query: 61 S 61
S
Sbjct: 112 S 112
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
LA ++ +IP GVG+ + +++ E + G++W +++ W ED + E
Sbjct: 165 LADALQKNIPSGVGTTSNQTLTEKEMNEIMNEGLEWLVKKDLAWKEDLVYCE 216
>sp|Q58095|RTCB_METJA tRNA-splicing ligase RtcB OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rtcB PE=3 SV=1
Length = 968
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q V++++D+ AA GIE+ QV V++H+GSRG GHQ+ TD L MEKA K
Sbjct: 688 SGNHFLEVQYVEKVFDEEAAEIYGIEE-NQVVVLVHTGSRGLGHQICTDYLRIMEKAAKN 746
Query: 196 DNIETNDRQLACARINSNKNKAFAK------QFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I+ DRQLACA S + +++ K + + H + ++F + F +DL
Sbjct: 747 YGIKLPDRQLACAPFESEEGQSYFKAMCCGANYAWANRQMITHWVRESFEEVFKIHAEDL 806
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M+++YDV+HNIAK EEH++DG++ ++VHRKG+TRAFPP H IP +Y GQPV+I G
Sbjct: 807 EMNIVYDVAHNIAKKEEHIIDGRKVKVIVHRKGATRAFPPKHEAIPKEYWSVGQPVIIPG 866
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
MGT SY++ GTE M+ETFGST HGAGR LSRAK+ + +E+ +L GI S
Sbjct: 867 DMGTASYLMRGTEIAMKETFGSTAHGAGRKLSRAKALKLWKGKEIQRRLAEMGIVAMSDS 926
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ EEAPE+YK+V V DTCH GIS K ++RP+ VIKG
Sbjct: 927 KAVMAEEAPEAYKSVDLVADTCHKAGISLKVARMRPLGVIKG 968
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 57/85 (67%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E E
Sbjct: 599 EVQSKIKELIKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIE 658
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E+G + +AD S VS +AK+RG Q+
Sbjct: 659 EHGCLKDADASYVSDKAKERGRVQL 683
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E E
Sbjct: 607 LIKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIE 658
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 15/60 (25%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G ++N+ ++L+EL ++QIANVA LPGI S+ +PDVH
Sbjct: 23 MRVPGRIYLNE----ILLDELEPEV-----------LEQIANVACLPGIYKYSIAMPDVH 67
>sp|O27634|RTCB_METTH tRNA-splicing ligase RtcB OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rtcB PE=3 SV=2
Length = 482
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 186/282 (65%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VDEI+D+ AA G+ G+V VMIHSGSRG GHQ+ +D L M+KA +R
Sbjct: 202 SGNHFLEVQMVDEIFDEEAARVYGVSP-GKVAVMIHSGSRGCGHQICSDYLRLMDKAYRR 260
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
I DRQLACA ++S++ + + + + +H + ++F F T +D+
Sbjct: 261 YKINIPDRQLACAPVDSDEALDYFQAMAAAANYAWANRQMIVHWVRESFEAVFGMTAEDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK E H + G++ + VHRKG+TRAF P IP +Y+ GQPV+I G
Sbjct: 321 EMEIVYDVAHNIAKKEVHTIKGRETEVFVHRKGATRAFGPGRDEIPQEYRKIGQPVIIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
TMGT SY+L GTE M+ETFGST HGAGR +SRA +++ +EV KLES+GI +R S
Sbjct: 381 TMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTYRGEEVQRKLESEGIYVRATS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+V EEAP +YK+V VV T H GIS+ ++ P+ V KG
Sbjct: 441 MPVVAEEAPGAYKDVDVVVRTAHETGISRLVARMLPLGVAKG 482
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 468 FERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM 527
+ L ++F ++P GVGSKG I + +++E LE G +W++ GY W +D EE G+M
Sbjct: 118 IKELINTLFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKM 177
Query: 528 LNADPSKVSMRAKKRGLPQV 547
+A KVS +AKKRG+PQ+
Sbjct: 178 EDASSEKVSEKAKKRGIPQL 197
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
+ Q+ANVA LPGI S+GLPD+H
Sbjct: 46 IDQVANVACLPGIQKFSIGLPDIH 69
>sp|Q8ZY09|RTCB_PYRAE tRNA-splicing ligase RtcB OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rtcB
PE=1 SV=1
Length = 484
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 9/284 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M++
Sbjct: 202 SGNHFLEIQVVDKIYDEKIAKLFGIEREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQ 261
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ V+YDV+HNIAK EEH+VD G + + VHRKG+TRAFPP IP Y+ GQPVLI
Sbjct: 321 GLEVVYDVAHNIAKLEEHVVDEKGTVRKVWVHRKGATRAFPPGRSEIPAKYREVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 381 PGSMGTASWILVGTHDAMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMAKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+ H VG +KK + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVEAAHQVGFAKKVVRQRPIGVVKG 484
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ + L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ EE
Sbjct: 115 RPKLKELVDTIFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIEER 174
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
G ADPSKVS +AK RG Q+
Sbjct: 175 GSWKLADPSKVSEKAKARGRDQL 197
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 121 LVDTIFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIE 172
>sp|Q9YB37|RTCB_AERPE tRNA-splicing ligase RtcB OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rtcB PE=3
SV=2
Length = 481
Score = 255 bits (652), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 199/320 (62%), Gaps = 15/320 (4%)
Query: 105 WAASKMGIEDVGQVCV-----MIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASK 157
W K IE+ G + + + R Q+ T +GNH+ E+Q+V+ ++D+ A
Sbjct: 164 WPEDKEHIEERGSWSLADSSKVSQTAKRRGAEQLGTLGSGNHFLEVQVVERVFDERIAKA 223
Query: 158 MGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKA 217
G+ + GQV VMIH+GSRG GHQVA+D L+ ME+AM++ DR+LA NS + +
Sbjct: 224 YGLFE-GQVVVMIHTGSRGLGHQVASDYLMIMERAMRKYGTIPPDRELASIPYNSPEAQN 282
Query: 218 FAKQFNT------TPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 271
+ + T + H ++F K F+ PD L + ++YDV+HNIAK EE+ VDG
Sbjct: 283 YVRAMAAAANFAWTNRQMITHWTRESFKKVFHQDPDKLGLEIVYDVAHNIAKIEEYEVDG 342
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K+K L++HRKG+TRAFPP HP IP DY GQPVLI G+MGT SY+L G +G++ + +
Sbjct: 343 KRKKLVIHRKGATRAFPPGHPEIPKDYMDVGQPVLIPGSMGTGSYILAGVPEGVKSWY-T 401
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
HGAGR +SR++++R + +VL +L ++GI IR ++ V+EE PE+YK+V V
Sbjct: 402 APHGAGRWMSRSRAKRTKTFNQVLEELAAKGIYIRASNRATVVEEMPEAYKDVDRVAQVA 461
Query: 392 HAVGISKKTFKLRPVAVIKG 411
HAVGI + ++RP+ V KG
Sbjct: 462 HAVGIGRLVARMRPIGVTKG 481
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +++ ++P G+GS G + ++ ++L++ L+ G++W++ GY W
Sbjct: 105 LRTNLTEEEVRPKLKDLVDTLYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGW 164
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
EDKEH EE G AD SKVS AK+RG Q+
Sbjct: 165 PEDKEHIEERGSWSLADSSKVSQTAKRRGAEQL 197
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 37/52 (71%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++ ++P G+GS G + ++ ++L++ L+ G++W++ GY W EDKEH E
Sbjct: 121 LVDTLYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGWPEDKEHIE 172
>sp|Q8TUS2|RTCB_METKA tRNA-splicing ligase RtcB OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rtcB PE=1 SV=1
Length = 988
Score = 254 bits (650), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 189/292 (64%), Gaps = 16/292 (5%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK- 194
+GNH+ E+Q+VDEIYDK AA KMGI + GQV +M+H+GSRGFGHQV +D L ME++M+
Sbjct: 697 SGNHFLEVQVVDEIYDKEAAEKMGIREEGQVTIMVHTGSRGFGHQVCSDHLRIMERSMRD 756
Query: 195 ---RDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDAFAKQFNTT 245
R + DRQLACA + +++ K A + + H ++F + F
Sbjct: 757 VERRFGVRIPDRQLACAAMGTDEAKRYFNAMNAAANYAFANRQMISHWTRESFVEVFGDE 816
Query: 246 ---PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI---PVDYQ 299
DD+ + VIYD++HN+AK E+H VDG+++ L+VHRKG+TRAF PV ++
Sbjct: 817 YGDADDMGIEVIYDIAHNMAKIEKHPVDGEERWLVVHRKGATRAFSEEALKKHGEPVPFE 876
Query: 300 LTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE 359
QPVLI G MGT SY+L GTEK M+ET+GSTCHGAGR +SRA ++R ++V +LE
Sbjct: 877 GLPQPVLIPGDMGTGSYILIGTEKAMEETWGSTCHGAGRTMSRAAAKRKFWGEDVARELE 936
Query: 360 SQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
QGI ++ AS +V EEAP +YK+V +VV GIS +LRP+ V+KG
Sbjct: 937 RQGILVKAASMPVVAEEAPPAYKDVDEVVRAVAEAGISDPVVRLRPIGVVKG 988
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 471 LAQSMFDHIPVGVGSK-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
L +++F ++P G+GS+ + ++ ++L + + G +W++ EG+ + ED +H E G M +
Sbjct: 604 LLETIFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIESRGNMTH 663
Query: 530 ADPS-----------KVSMRAKKRGLPQV 547
A + S RA +RG PQ+
Sbjct: 664 AYETIGWEEYGPRDDVASKRAIERGRPQL 692
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 29 MVGGFLPGV-KQIANVAALPGIVGRSVGLPDVH 60
++ G GV Q+ANVA LPGI G S+ LPD H
Sbjct: 38 LIDGMEKGVFDQVANVACLPGIYGYSIALPDAH 70
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 418 LAQSMFDHIPVGVGSK-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +++F ++P G+GS+ + ++ ++L + + G +W++ EG+ + ED +H E
Sbjct: 604 LLETIFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIE 656
>sp|Q9V168|RTCB_PYRAB tRNA-splicing ligase RtcB OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rtcB PE=3 SV=1
Length = 916
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 182/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 636 SGNHFLEVQVVDKIFDPEVAKVYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 694
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
I DR+L S + + + A F + H + ++F + F P+DL
Sbjct: 695 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEDL 754
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H IP Y+ GQPVLI G
Sbjct: 755 GMSIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIPG 814
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R AS
Sbjct: 815 SMGTASYVLAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAAS 874
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 875 MRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 916
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ ++L ++F ++P GVGS+G + ++ +++ L G W++ GY W ED E EE
Sbjct: 549 RPRIKQLVDTLFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEEDLERLEEG 608
Query: 525 GRMLNADPSKVSMRAKKRGLPQV 547
GRM ADP VS RAK+RG PQ+
Sbjct: 609 GRMEGADPDAVSQRAKQRGAPQL 631
>sp|Q8U0H4|RTCB_PYRFU tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rtcB PE=3 SV=1
Length = 970
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 183/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 689 SGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 747
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 748 YGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFRQDPEGD 807
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H IP Y+ GQPVLI
Sbjct: 808 LGMEIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEAIPKIYRDVGQPVLIP 867
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SYVL GTE M ETFGSTCHGAGR LSRA + R + ++L +GI +R A
Sbjct: 868 GSMGTASYVLAGTEGAMAETFGSTCHGAGRVLSRAAATRQYRGDRIRDELLRRGIYVRAA 927
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 928 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 970
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
++L ++F ++P GVGS+G + ++ +++ L G W++ +GY W D E EE GRM
Sbjct: 606 KQLVDTLFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEEGGRME 665
Query: 529 NADPSKVSMRAKKRGLPQV 547
ADP VS RAK+RG PQ+
Sbjct: 666 GADPDAVSQRAKQRGAPQL 684
>sp|Q5JCZ1|RTCB_PYRKO tRNA-splicing ligase RtcB OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rtcB PE=3 SV=1
Length = 482
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 181/282 (64%), Gaps = 7/282 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q VD++Y++ A G+ + GQV VM+H+GSRG GHQVA+D L MEKA ++
Sbjct: 202 SGNHFLEVQYVDKVYNEEIAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMEKANRK 260
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+L S + + + A F + H + ++F + F +D+
Sbjct: 261 YGVPWPDRELVSVPFQSEEGQQYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDM 320
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+M ++YDV+HNIAK EEH VDGK+ ++VHRKG+TRAFP HP +P Y+ GQPVLI G
Sbjct: 321 EMEIVYDVAHNIAKLEEHEVDGKKVKVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPG 380
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SYVL G E M+ETFGS+CHGAGR LSR + R + N+L +GI +R AS
Sbjct: 381 SMGTASYVLAGAEGSMRETFGSSCHGAGRLLSRKAATRQYRGDRLRNELLQRGIYVRAAS 440
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++V EEAP +YK+V +VV H GI+ ++RP+ V KG
Sbjct: 441 LRVVAEEAPGAYKSVDNVVQVVHEAGIANLVARMRPMGVAKG 482
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + + L ++F ++P G+GSKG + ++ L++ L G W++ GY W D EH E
Sbjct: 113 EVRPKIKELVDTLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWERDLEHLE 172
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS +AK+RG PQ+
Sbjct: 173 EGGRMEGADPDAVSQKAKQRGAPQL 197
>sp|O59245|RTCB_PYRHO tRNA-splicing ligase RtcB OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rtcB PE=1 SV=1
Length = 871
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 590 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 648
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 649 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 708
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 709 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 768
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 769 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 828
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 829 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 871
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 463 EDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCE 522
E + ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E
Sbjct: 501 EVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLE 560
Query: 523 EYGRMLNADPSKVSMRAKKRGLPQV 547
E GRM ADP VS RAK+RG PQ+
Sbjct: 561 EGGRMEGADPEAVSQRAKQRGAPQL 585
>sp|Q74MJ0|RTCB_NANEQ tRNA-splicing ligase RtcB OS=Nanoarchaeum equitans (strain Kin4-M)
GN=rtcB PE=3 SV=1
Length = 477
Score = 246 bits (627), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 178/282 (63%), Gaps = 9/282 (3%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GI + QV V+IH+GSRG GHQVA+D L EK K
Sbjct: 199 SGNHFLEIQVVDQIYDEEIAKAFGIYEKNQVTVLIHTGSRGLGHQVASDYLRLFEKKYKY 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPDDL 249
D DR+L A +S + + K + L + + +F K + +
Sbjct: 259 D---VPDRELIYAPYDSKDAQNYLKAMAAAANFAWANRQLITYWVRKSFEKVLRKNIESI 315
Query: 250 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ ++YD++HNIAK EEH +DGK++ L+V+RKG+TRAFPP H + +Y+ GQPV+I G
Sbjct: 316 GLEIVYDLAHNIAKFEEHTIDGKKQKLIVYRKGATRAFPPGHKELWGEYKKYGQPVIIPG 375
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVAS 369
+MGT SY+L G K M+ +FGS+ HGAGR LSR K+++ Y EV+ KL GI ++ +
Sbjct: 376 SMGTASYLLVGQPKAMELSFGSSAHGAGRQLSRVKAKKLYSYSEVIRKLREMGIIVKSTT 435
Query: 370 PKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V+EE PE+YK++ +VV H +GISK + RPVAVIKG
Sbjct: 436 KTGVLEEIPEAYKDIDEVVRVTHELGISKIVARFRPVAVIKG 477
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E K+ L +F ++P GVG G + ++ +L + L+ G++W++ G+ W
Sbjct: 102 LRTNLTIDEIKDRLNLLVNEIFRNVPAGVGEGGKLKLSIDELNKVLDYGVNWAIDNGFGW 161
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
ED+ E +G + AD VS AK+RG Q+
Sbjct: 162 EEDRNRIESHGYLDFADSDAVSNTAKQRGKDQL 194
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L +F ++P GVG G + ++ +L + L+ G++W++ G+ W ED+ E
Sbjct: 118 LVNEIFRNVPAGVGEGGKLKLSIDELNKVLDYGVNWAIDNGFGWEEDRNRIE 169
>sp|P71930|RTCB_MYCTU RNA-splicing ligase RtcB OS=Mycobacterium tuberculosis GN=rtcB PE=2
SV=5
Length = 432
Score = 232 bits (592), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVTG--NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
E CE+ G M AD +K+S RA +RGL Q+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQI 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,116,468
Number of Sequences: 539616
Number of extensions: 10218764
Number of successful extensions: 24431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 24027
Number of HSP's gapped (non-prelim): 296
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)