Query psy10975
Match_columns 574
No_of_seqs 301 out of 1318
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 23:14:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3833|consensus 100.0 5E-105 1E-109 806.9 25.9 409 1-411 30-505 (505)
2 PF01139 RtcB: tRNA-splicing l 100.0 2.3E-93 4.9E-98 765.3 14.1 367 1-411 1-420 (420)
3 PRK09588 hypothetical protein; 100.0 1.9E-87 4E-92 709.0 27.5 339 3-412 10-374 (376)
4 TIGR03073 release_rtcB release 100.0 1.3E-84 2.8E-89 683.5 24.8 317 35-405 14-356 (356)
5 COG1690 RtcB Uncharacterized c 100.0 4.1E-77 9E-82 639.0 21.0 365 1-411 4-432 (432)
6 KOG3833|consensus 99.9 3.8E-28 8.3E-33 247.5 5.4 149 403-551 26-223 (505)
7 COG1690 RtcB Uncharacterized c 99.6 9.2E-17 2E-21 173.7 5.3 109 445-554 66-182 (432)
8 PF01139 RtcB: tRNA-splicing l 98.9 1E-09 2.2E-14 119.3 4.1 92 450-553 62-161 (420)
9 TIGR03073 release_rtcB release 97.9 3.9E-06 8.5E-11 89.8 2.2 89 86-207 121-209 (356)
10 PRK09588 hypothetical protein; 97.9 3.8E-06 8.2E-11 90.4 1.5 89 86-207 132-220 (376)
11 PRK09140 2-dehydro-3-deoxy-6-p 52.6 19 0.00042 35.9 4.4 122 356-508 5-129 (206)
12 PRK07114 keto-hydroxyglutarate 41.6 1.4E+02 0.003 30.4 8.6 122 353-506 7-135 (222)
13 cd04729 NanE N-acetylmannosami 40.9 97 0.0021 30.7 7.3 129 356-508 5-148 (219)
14 PF06953 ArsD: Arsenical resis 38.0 28 0.0006 32.4 2.7 68 351-422 29-98 (123)
15 PF04930 FUN14: FUN14 family; 28.5 33 0.00071 30.3 1.5 52 432-484 39-90 (100)
16 PRK05718 keto-hydroxyglutarate 27.6 78 0.0017 31.9 4.2 91 450-548 40-133 (212)
17 PRK07455 keto-hydroxyglutarate 27.0 2.8E+02 0.0061 27.1 7.9 124 353-507 4-129 (187)
18 KOG0741|consensus 26.8 92 0.002 36.2 4.9 138 362-532 369-515 (744)
19 cd00331 IGPS Indole-3-glycerol 25.3 1.5E+02 0.0032 29.2 5.7 71 425-507 72-145 (217)
20 PF04843 Herpes_teg_N: Herpesv 24.7 45 0.00097 32.7 1.8 20 490-509 36-55 (172)
21 TIGR03470 HpnH hopanoid biosyn 24.1 3.3E+02 0.0071 28.8 8.3 62 346-420 56-118 (318)
22 TIGR03821 AblA_like_1 lysine-2 22.4 3.5E+02 0.0075 28.9 8.1 115 378-502 153-295 (321)
23 PF00389 2-Hacid_dh: D-isomer 21.5 50 0.0011 29.9 1.4 84 445-539 13-101 (133)
24 cd04727 pdxS PdxS is a subunit 21.4 2E+02 0.0044 30.5 5.9 83 350-459 53-140 (283)
25 PRK05848 nicotinate-nucleotide 21.0 81 0.0018 33.1 3.0 65 436-505 185-252 (273)
26 PRK06552 keto-hydroxyglutarate 20.4 3.6E+02 0.0077 27.2 7.3 127 353-507 5-133 (213)
No 1
>KOG3833|consensus
Probab=100.00 E-value=4.6e-105 Score=806.86 Aligned_cols=409 Identities=68% Similarity=1.048 Sum_probs=389.1
Q ss_pred CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc-------cccCCcc
Q psy10975 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ-------WLSDNTM 73 (574)
Q Consensus 1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p-------~~~~p~~ 73 (574)
|||.+.||++++|.+.|.++|+|.++++.+|+|+.|++||.|+|+|||++++++++||+|.||||| |+.+|+.
T Consensus 30 M~veg~fYVn~~Leklm~~EL~~~c~~~~iGgflp~~kQI~nVasLPGivg~sIGLPDiHsGYGF~IGn~AAFD~nnPes 109 (505)
T KOG3833|consen 30 MNVEGTFYVNEELEKLMFEELKNSCRGGGIGGFLPAVKQIANVASLPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNNPES 109 (505)
T ss_pred ceeeEEEEecHHHHHHHHHHHHhcCCCCccccccHHHHHHhhhhccCcccccccCCCccccccCccccceeeeccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 4455554
Q ss_pred ---------------c--ccc----------------ccCCCCcccCCCC-------Cchhh---h---hhhhhhhhhhh
Q psy10975 74 ---------------R--SSN----------------IWKRSPLTLGAGN-------HYAEI---Q---IVDEIYDKWAA 107 (574)
Q Consensus 74 ---------------r--~t~----------------I~~~IP~GvG~~~-------~l~ei---g---~l~~~~d~~~~ 107 (574)
| +|| ++..||.|+|+.. ++.+. + .|+++| .|.+
T Consensus 110 VvSPGGVGfDINCGVRlLRTNL~e~~v~p~keqLaq~lFdhIPvGvGS~g~ipm~a~dL~e~LEmG~dw~Lregy-~waE 188 (505)
T KOG3833|consen 110 VVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGRIPMNADDLEEALEMGMDWSLREGY-IWAE 188 (505)
T ss_pred eecCCccceecccchhhhhhcccccccchHHHHHHHHHHhhCCcccCcCCcccccHHHHHHHHHhcccceeccCc-chhh
Confidence 2 344 7788999999987 23322 2 567788 8999
Q ss_pred hhhcccccccee------eeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchh
Q psy10975 108 SKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179 (574)
Q Consensus 108 d~~~~e~~G~l~------v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~ 179 (574)
|.++||+.|++. |+.+++.||+. |||| .||||+|+|.||||||++.|..+|+++.+|+++|||||||||||
T Consensus 189 DkEhCEeyGrml~aD~~kVs~raKkrGLp-QLGTLGaGNHYaEvQvVDEiyd~~~A~~MGI~~kGQvvVMiH~GSRGlGH 267 (505)
T KOG3833|consen 189 DKEHCEEYGRMLQADPRKVSQRAKKRGLP-QLGTLGAGNHYAEVQVVDEIYDKEAASKMGIDEKGQVVVMIHSGSRGLGH 267 (505)
T ss_pred hHHHHHHhhhHhhCChHHhhhhhhhcCCc-cccccCCCCceEEEEehHHHhhHhhhhhcCcCCCCcEEEEEecCCccccc
Confidence 999999999654 88999999998 9999 99999999999999999999999999779999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCCCCCcee
Q psy10975 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPDDLDMHV 253 (574)
Q Consensus 180 ~Ia~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~~~~~~l 253 (574)
++|++-+-+|++++++.++-+.++||+|.+++|.++|+||.. +|||| ||..|. .+|++|.++|+.+|+|+++++
T Consensus 268 qVatdsLv~Mekamard~i~~nd~QLACarinS~Egq~Yl~~MaaAaNfAwVNRs~~Tf~~RqAF~KvF~~s~dd~dl~v 347 (505)
T KOG3833|consen 268 QVATDSLVKMEKAMARDKIVVNDRQLACARINSVEGQDYLKGMAAAANFAWVNRSSMTFLTRQAFAKVFNTSPDDLDLHV 347 (505)
T ss_pred hhhHHHHHHHHHhhhccceeecchhhcccccCChhhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCccccceEE
Confidence 999999999999999999999999999999999999999987 89999 999999 999999999999999999999
Q ss_pred EEEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccccccCc
Q psy10975 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTC 333 (574)
Q Consensus 254 i~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~Sa~ 333 (574)
|||++||+++.|+|.+||++++++||||||||||||.||.||-+|+.+||||+|.|||||+|||+.|+++|+.++|.|+|
T Consensus 348 iYDVsHNiaKvE~H~VdG~er~l~VHRKGatRAFPpHHPlIpvdYql~GQPVlvGGsMGTcSYvLtGtEqgm~etFGsTC 427 (505)
T KOG3833|consen 348 IYDVSHNIAKVEKHMVDGKERDLLVHRKGATRAFPPHHPLIPVDYQLIGQPVLVGGSMGTCSYVLTGTEQGMDETFGSTC 427 (505)
T ss_pred EeehhhhHHHHHHHhcCCceeeeeeeccCccccCCCCCCCCccchhhcCCcEEecccccceeEEEeccccchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEec
Q psy10975 334 HGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411 (574)
Q Consensus 334 HGAGR~~SR~~Ak~~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg 411 (574)
|||||.+||.++|+.++.+++.+.|+..+|.+|+.+.+++.||||+.|||+.+|++.+..+||.+++.+|||+++|||
T Consensus 428 HGAGRaLSRakSrr~~~~~sV~D~L~~~~I~iR~aSpklvmEEAPesYKdVtdVVdtc~~aGiskK~~klrPiaVIKG 505 (505)
T KOG3833|consen 428 HGAGRALSRAKSRRNLTHESVLDKLRSRGIAIRVASPKLVMEEAPESYKDVTDVVDTCDAAGISKKAIKLRPIAVIKG 505 (505)
T ss_pred ccchHHhhhhhhcccCcHHHHHHHHHhCCeEEEeCCccchhhhCchhhhhHHHHhhhhhhcccchhhhcccceeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0682 belong to this family.; PDB: 2EPG_B 1UC2_B.
Probab=100.00 E-value=2.3e-93 Score=765.34 Aligned_cols=367 Identities=34% Similarity=0.593 Sum_probs=265.7
Q ss_pred CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc--------cccCCc
Q psy10975 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ--------WLSDNT 72 (574)
Q Consensus 1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p--------~~~~p~ 72 (574)
||||++||+++.+++ + +|++||.++++||++++ +++|||+|+|||+| +.+.|+
T Consensus 1 ~~vp~~i~~~~~~ie---~---------------~a~~Ql~~~a~lp~v~~-v~~MPD~H~G~G~pIG~v~~~~~~I~P~ 61 (420)
T PF01139_consen 1 MNVPVRIYASESWIE---D---------------EALEQLKNLARLPGVVG-VAIMPDAHPGYGFPIGGVIATDGAIIPN 61 (420)
T ss_dssp -SS-EEEE--HHHHH---T---------------CHHHHHHHHTTSTTB-S-EEEEEEEE--SSS-EEEEEEEE-EE-HH
T ss_pred CCCCEEEEcCCCcCC---H---------------HHHHHHHHHhcCCCeeE-EEECCCcCCCCCcccchheeecCccccc
Confidence 999999999998866 2 38999999999999999 88999999999999 334465
Q ss_pred c---------c--cc-----------------cccCCCCcccCCCCC--chhh---hhhhhhhhhhhhhh-hcccc-ccc
Q psy10975 73 M---------R--SS-----------------NIWKRSPLTLGAGNH--YAEI---QIVDEIYDKWAASK-MGIED-VGQ 117 (574)
Q Consensus 73 ~---------r--~t-----------------~I~~~IP~GvG~~~~--l~ei---g~l~~~~d~~~~d~-~~~e~-~G~ 117 (574)
. + +| .|++.||+|+++++. ++.. ..+.++. .|.-+. ...++ ...
T Consensus 62 ~VG~DIgCGm~~~~t~l~~~~i~~~~~~~l~~~i~~~ip~G~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 140 (420)
T PF01139_consen 62 AVGVDIGCGMRLVRTNLKAEDIPRDKLEKLDDAIRKNIPSGVGSHRKIPLSKEDLEEVLEEGA-PWLLEKGYGFPEEADP 140 (420)
T ss_dssp HC-SSTT-EEEEEEECEEHHHH-GGGHHHHHHHHHHHS--STT---SS---CCCHHHHHHHCH-HHHHHTTSS-GGT--G
T ss_pred ccccccccceEEEEccCchHhhcchhHHHHHHHHhhhCCCCCCCCCCCcCCHHHHHHHHHhhh-HHHHHhhcCCccccch
Confidence 5 1 11 166789999887653 2111 1122211 111000 00000 000
Q ss_pred eeeeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchhHHHHHHHHHHHHHHHh
Q psy10975 118 VCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195 (574)
Q Consensus 118 l~v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Ia~~Y~~~~~~a~~~ 195 (574)
-.+...+.+++.. |||| |||||||||+||+|||++.|+.||+++.+++||||||||||||++||++|++.+...+.+
T Consensus 141 ~~~~~~~~~~~~~-qLGTLGgGNHFiEiq~v~~v~~~~~a~~~gl~~~g~v~l~vHsGSRglG~~i~~~~~~~a~~~~~~ 219 (420)
T PF01139_consen 141 SKVSQKARDRGRK-QLGTLGGGNHFIEIQVVEEVFDKEAANALGLDENGQVWLMVHSGSRGLGHQIAEYYIKKAKEQMKK 219 (420)
T ss_dssp GGS-HHHHHHHGG-GTT---STT-EEEEEEEEEES-HHHHHHCT--T-TEEEEEEEE--CCHHHHHHHHHHHHHHCCHHH
T ss_pred hhccHHHHhhhHh-hcCCCCCCcceEEeeeeehhcCHHHHhhcCccccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 1133445567776 9999 999999999999999999999999998899999999999999999999999999888888
Q ss_pred CCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCCCCCceeEEEcccccccceeeee
Q psy10975 196 DNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 269 (574)
Q Consensus 196 ~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~~~~~~li~D~~HN~~~~E~h~~ 269 (574)
+++++++++|+|+|++|++|++||.+ +|||+ ||++|+ +++++|.++|+. + +++..++||++|||++.|.|
T Consensus 220 ~~~~~~~~~l~~l~~~s~~~~~Yl~~m~~A~~~A~~NR~~i~~~i~~~l~~~~~~-~-~~~~~~~~d~~HN~~~~e~~-- 295 (420)
T PF01139_consen 220 YGIKLPDKDLAYLPLDSEEGQDYLKAMNAAQNYAFANRQLIAHRILEALRDVFGK-A-DLEIELVYDVHHNYIKFEEH-- 295 (420)
T ss_dssp CT---SSCCG--EETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-S-C-CC--EEEEEEESEEEEEEEE--
T ss_pred cCCCCCCcccceecCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCc-c-ccccceEEECcCCCeeEEEe--
Confidence 89999999999999999999999999 89999 999999 999999998887 2 56788999999999999988
Q ss_pred cCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccc--cccCcCCchhhhhHHHHHh
Q psy10975 270 DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQET--FGSTCHGAGRALSRAKSRR 347 (574)
Q Consensus 270 dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s--~~Sa~HGAGR~~SR~~Ak~ 347 (574)
+| +++|||||||||| ..|+||||||||||+||||+| +||+++ |||+||||||+|||++|++
T Consensus 296 ~~--~~~~vhRKGAt~A-------------~~G~~~iIPGsMg~~Syi~~g--~~~~~~~~~~S~~HGAGR~~SR~~a~~ 358 (420)
T PF01139_consen 296 DG--EEVWVHRKGATPA-------------FKGQPVIIPGSMGDGSYIVRG--KGNPEWKSLYSASHGAGRKMSRSEAKR 358 (420)
T ss_dssp CC--EEEEEEEESEEE---------------T--EEEE--STTS-EEEEE----HHHHHHSSSEEE-SS-BSS-HHHHHH
T ss_pred cc--cceEEEcccceec-------------CCCCeeEeccCCCCCeEEEEc--CCchhhhhcCCCcCcHHHHHhHHHHHH
Confidence 34 5899999999999 479999999999999999999 677877 9999999999999999999
Q ss_pred hCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEec
Q psy10975 348 NLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411 (574)
Q Consensus 348 ~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg 411 (574)
+++.++++++|+. + .++|.+++.++||||+|||||++||++++++||+++|++||||+||||
T Consensus 359 ~~~~~~~~~~~~~-~-~v~~~~~~~~~dEaP~AYK~i~~Vi~~~~~~~l~~~v~~l~Pi~~~Kg 420 (420)
T PF01139_consen 359 RITLEDFKEEMKG-G-IVICSDKELLLDEAPMAYKDIEEVIDDQEEAGLAEVVARLKPILNIKG 420 (420)
T ss_dssp H--HHHCCCCCCC-T-EEEES-HHHHHHT-GGGB--HHHHHHHHHHCTSSEEEEEEEEEEEEE-
T ss_pred hcCHHHHHHHHhC-C-eEEEecCCCchhhChhhcCCHHHHHHHHhhCCCeeEEEEEEEEEEEeC
Confidence 9999999999985 6 888999999999999999999999999999999999999999999997
No 3
>PRK09588 hypothetical protein; Reviewed
Probab=100.00 E-value=1.9e-87 Score=708.99 Aligned_cols=339 Identities=24% Similarity=0.355 Sum_probs=274.7
Q ss_pred ceEEEEeChHH-HHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc--------cccCCcc
Q psy10975 3 VEGVFFVNDHL-EKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ--------WLSDNTM 73 (574)
Q Consensus 3 v~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p--------~~~~p~~ 73 (574)
.|+.+|+|+.. ++. +|++||.++|+||++++ +++|||+|+|||+| +.+.|+.
T Consensus 10 ~~~~~~~~~~~~iE~------------------~a~~Ql~~~a~lp~v~~-v~~MPD~H~G~G~pIG~v~~~~~~I~P~~ 70 (376)
T PRK09588 10 DAVFIIASDKSWIES------------------SAIQQLHTTAKLPGMRR-VVGMPDLHPGRGYPIGAAFFSVGRFYPAL 70 (376)
T ss_pred CCEEEEcCCCCccCH------------------HHHHHHHHHhcCCCccE-EEECCCcCCCCCCceEEEEecCCEEecCc
Confidence 47899999755 332 38999999999999986 88999999999999 2233443
Q ss_pred ccccccCCCCcccCCCC-Cc--hhh--hhhhhhhhhh--hhhhhccccccceeeeccccCCCCCccccc--ccceeeeee
Q psy10975 74 RSSNIWKRSPLTLGAGN-HY--AEI--QIVDEIYDKW--AASKMGIEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQ 144 (574)
Q Consensus 74 r~t~I~~~IP~GvG~~~-~l--~ei--g~l~~~~d~~--~~d~~~~e~~G~l~v~~~agsRg~g~QLGT--gGNHFiEiq 144 (574)
+.-.|.|||.... ++ .++ ..+.+.+..+ ..+...+++. + ......+|+.. |||| |||||||||
T Consensus 71 ----VG~DIgCGm~l~~t~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~~~-qLGTlGgGNHFiEiq 142 (376)
T PRK09588 71 ----VGNDIGCGMALWQTDLLARKYNADKLEKRLSDLDDPLDESWLEEN--V-PLALAQHPWRS-SLGTIGGGNHFAELQ 142 (376)
T ss_pred ----cccccCCeeEEEecCCChHHCCHHHHHHhhhccccccchhhhhcc--c-ccchhhhhhhh-hcCCCCCCcceEEEE
Confidence 5566889987644 22 122 1111111000 0010001110 0 01112466776 9999 999999999
Q ss_pred hhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchhHHHHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh---
Q psy10975 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ--- 221 (574)
Q Consensus 145 ~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Ia~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a--- 221 (574)
+||+|||++.|++|||++ +++||||||||||||++||++|++.+. ...+|++|++|++||.+
T Consensus 143 ~v~~i~d~~~a~~~gl~~-g~v~l~vHsGSRglG~~v~~~~~~~~~--------------~~~l~~~s~~g~~Yl~~m~~ 207 (376)
T PRK09588 143 QVDEIYDAELFALLGLDA-DQLLLLVHSGSRGLGQAILRRHVASFG--------------HNGLPEGSDDALAYLAEHDD 207 (376)
T ss_pred eeceecCHHHHHHcCCCC-CcEEEEEecCCchhHHHHHHHHHHHhh--------------hcCCCCCCHHHHHHHHHHHH
Confidence 999999999999999987 999999999999999999999988652 13378899999999999
Q ss_pred -hcccc-chHHHH-HHHHHHHHHcCCCCCCCCceeEEEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCccc
Q psy10975 222 -FNTTP-DDLDMH-VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDY 298 (574)
Q Consensus 222 -~n~A~-NR~~i~-~v~~~~~~~~~~~~~~~~~~li~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~ 298 (574)
+|||+ ||++|+ +++++| +. +..++||++|||+++|.| ++ +++||||||||||
T Consensus 208 A~~~A~~NR~~i~~~i~~~l----~~-----~~~~~~d~~HN~~~~e~~--~~--~~~~vhRKGAt~A------------ 262 (376)
T PRK09588 208 ALAFARANRQLIARRILQQL----RA-----EGEPVLDVAHNFVEPCQV--GG--EDGWLHRKGATPS------------ 262 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cc-----CCCeEEECcCcceeEEEE--CC--eeEEEECcccccC------------
Confidence 89999 999999 777776 33 246789999999999965 44 5789999999999
Q ss_pred ccCCCeEEEcCCCCCCceEEeecCCccccccccCcCCchhhhhHHHHHhhCCHHHHHHHHH--hCCeEEEEcCCcccccc
Q psy10975 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLE--SQGISIRVASPKLVMEE 376 (574)
Q Consensus 299 ~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~Sa~HGAGR~~SR~~Ak~~~~~~~~~~~L~--~~gi~~~~~~~~~l~eE 376 (574)
.|+||||||||||+||||+| +||++||||+||||||+|||++|+++++.+...++|+ ..|+.++|.+.+.++||
T Consensus 263 --~g~~viIPGSMg~~Syi~~G--~g~~~s~~S~~HGAGR~mSR~~A~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~dE 338 (376)
T PRK09588 263 --DQGLVVIPGSRGDYSYLVKP--VASEESLFSLAHGAGRKWMRTECKGRLAAKFTVTQLSRTPLGSRVICRDRQLIFEE 338 (376)
T ss_pred --CCCceEeccCCCCceEEEEc--cCChhhhcCCCCcccchhhHHHHHhhhhhhhHHHHHHHhcCCCEEEECCCCccccc
Confidence 48999999999999999999 5889999999999999999999999988777777776 45889999999999999
Q ss_pred ccccccChhHHHhhccccCceeEeEEEEeeEEEecc
Q psy10975 377 APESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGI 412 (574)
Q Consensus 377 AP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~ 412 (574)
||+|||||++||++++++||+++|++|+||+||||.
T Consensus 339 aP~AYKdi~~Vi~~~~~~gl~~vva~l~Pl~~~Kg~ 374 (376)
T PRK09588 339 APEAYKSIESVIQDLVQAGLITPVARLRPVLTYKTS 374 (376)
T ss_pred ChhccCCHHHHHHhhhcCCceeEEEEEEEEEEEeCC
Confidence 999999999999999999999999999999999997
No 4
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=100.00 E-value=1.3e-84 Score=683.49 Aligned_cols=317 Identities=26% Similarity=0.368 Sum_probs=256.3
Q ss_pred hHHHHHHHHhcCCCceeeeeecccCCCCCCCc--------cccCCccccccccCCCCcccCCCC-Cc--hhh--hhhhhh
Q psy10975 35 PGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ--------WLSDNTMRSSNIWKRSPLTLGAGN-HY--AEI--QIVDEI 101 (574)
Q Consensus 35 ~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p--------~~~~p~~r~t~I~~~IP~GvG~~~-~l--~ei--g~l~~~ 101 (574)
.|++||.++|+||++++ +++|||+|+|||+| +.+.|+. +.-.|.|||.... ++ .++ ..+.+.
T Consensus 14 ~a~~Ql~~~a~lp~v~~-v~~MPD~H~G~G~pIG~v~~~~~~I~P~~----VG~DIgCGm~l~~t~l~~~~~~~~~l~~~ 88 (356)
T TIGR03073 14 KAIQQLQTTAQLPGMRR-VVGMPDLHPGRGYPIGAAFFSVGRFYPAL----VGNDIGCGMALWQTGLLARKYNLDKLEKR 88 (356)
T ss_pred HHHHHHHHHhcCCCccE-EEECCCcCCCCCcceEEEEecCCEEeccc----cccCcCCeEEEEecCCChHhCCHHHHHHH
Confidence 49999999999999987 88999999999999 2223433 4556889987643 22 111 111111
Q ss_pred h---hhhhhhhhccccccceeeeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCC
Q psy10975 102 Y---DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 176 (574)
Q Consensus 102 ~---d~~~~d~~~~e~~G~l~v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRg 176 (574)
+ +....+.+ +++.+.+ ....+|+.. |||| |||||||||+||+|||++.|++|||++ +++||||||||||
T Consensus 89 l~~~~~~~~~~~-~~~~~~~---~~~~~~~~~-qLGTlGgGNHFiEiq~v~~i~d~~~a~~~Gl~~-g~v~l~iHSGSRg 162 (356)
T TIGR03073 89 LGNLDLPLDEQW-DEENLPL---APALHGFRS-SLGTIGGGNHFAELQQVDQIYDADALATLGLDA-KQLLLLVHSGSRG 162 (356)
T ss_pred HhcCCcccchhh-hhhhccc---ccccccchh-ccCCCCCCcceEEEEeeccccCHHHHHHcCCCC-CcEEEEEecCCch
Confidence 1 00000000 1111211 122367776 9999 999999999999999999999999987 9999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCCCCC
Q psy10975 177 FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPDDLD 250 (574)
Q Consensus 177 lG~~Ia~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~~~~ 250 (574)
||++||++|++.+.. .++|.+|++|++||.+ +|||+ ||++|+ +++++|.. .
T Consensus 163 lG~~i~~~~~~~~~~--------------~~l~~~s~~g~~Yl~~m~~A~~~A~~NR~~i~~~v~~~l~~---------~ 219 (356)
T TIGR03073 163 LGQAILRRHVDYFGH--------------NGLPEGSPAAAAYLAQHDDALRFAKANRQLIARRILQRLRA---------K 219 (356)
T ss_pred hHHHHHHHHHHHHHH--------------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------c
Confidence 999999999987521 2678899999999999 89999 999999 77777742 2
Q ss_pred ceeEEEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccccc
Q psy10975 251 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330 (574)
Q Consensus 251 ~~li~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~ 330 (574)
..++||++|||+++|.| +| +++||||||||||. ++|+||||||||+||||+| ++|++|||
T Consensus 220 ~~~~~d~~HN~~~~E~~--~g--~~~~vhRKGAt~A~--------------~g~viIPGSMg~~Syiv~G--~gn~~~~~ 279 (356)
T TIGR03073 220 GDPLLDVNHNLVSPATI--EG--EDGWLHRKGATPAD--------------QGPVVIPGSRGDYSYLVQP--VPSEESLF 279 (356)
T ss_pred cceEEEccccceeeeee--cC--ceEEEECccccccC--------------CCcEEeccCCCCceEEEEc--cCCchhcc
Confidence 35789999999999986 45 57899999999992 4599999999999999999 56789999
Q ss_pred cCcCCchhhhhHHHHHhhCCHHHHHHHHHhC--CeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEe
Q psy10975 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQ--GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRP 405 (574)
Q Consensus 331 Sa~HGAGR~~SR~~Ak~~~~~~~~~~~L~~~--gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~P 405 (574)
|+||||||+|||++|+++++.+...++|++. |+.++|.+.+.++||||+|||||++||++++++||+++|++|+|
T Consensus 280 S~~HGAGR~mSR~~A~~~~~~~~~~~~l~~~~~g~~v~~~~~~~~~dEaP~AYKdi~~Vi~~~~~~gl~~~va~l~P 356 (356)
T TIGR03073 280 SLAHGAGRKWMRSECKDRLAARFSVDQLRRTRLGSRVICEDRQLIYEEAPEAYKSIDSVVGALLQAGLIKVVARLKP 356 (356)
T ss_pred CCCCcccchhhHHHHHhhcccchhHHHHHHhcCCCEEEECCCCcccccChhccCCHHHHHHhhhhCCceeEEEEEcC
Confidence 9999999999999999976665555666544 88899999999999999999999999999999999999999998
No 5
>COG1690 RtcB Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.1e-77 Score=638.96 Aligned_cols=365 Identities=40% Similarity=0.625 Sum_probs=320.7
Q ss_pred CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc---------c--cc
Q psy10975 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ---------W--LS 69 (574)
Q Consensus 1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p---------~--~~ 69 (574)
||+|+.+|.++.+...+..+ +++|+.|.|.||++..++++|||+|+|||+| . .+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~---------------~~~Q~~n~A~lp~i~~~i~~mpd~h~g~g~~iG~va~~~~~~g~I 68 (432)
T COG1690 4 MRVPVRVWGDDILNELTEAD---------------ALMQVVNVATLPGIVRASYAMPDVHWGYGFPIGGVAATDVDNGVI 68 (432)
T ss_pred eeeeeeechhhhhccchhhH---------------HHHHHHhhccchhhhhhhhcCcccccCCCCcccceeeeeccCceE
Confidence 79999999999998776644 8999999999999999999999999999999 1 23
Q ss_pred CCcc---------c--ccc----------------ccCCCCcccCCCCC------chhh---h---hhhhhhhhhhhhhh
Q psy10975 70 DNTM---------R--SSN----------------IWKRSPLTLGAGNH------YAEI---Q---IVDEIYDKWAASKM 110 (574)
Q Consensus 70 ~p~~---------r--~t~----------------I~~~IP~GvG~~~~------l~ei---g---~l~~~~d~~~~d~~ 110 (574)
+|.. + +|+ |+.+||.|+++.+. ++.+ + .+..++ .+..|..
T Consensus 69 ~P~gvg~DInCg~~~~rt~l~~~d~k~~~~~L~~~l~~~vp~G~g~~~~~~~~~~~~~v~~~~~~~~v~~~~-~~~~d~~ 147 (432)
T COG1690 69 SPGGVGFDINCGVRLLRTNLDREDLQPRLPAVMDRLDRAIPRGVGTAGVLPDRNTLQEVLTGGARWAVEQGL-GVALDLE 147 (432)
T ss_pred ccCCccccccCCchheecccchhhhchhHHHHHHHHHhhCCcccCCCccccchhhhHHHhhccceeeecccc-ccccccc
Confidence 3443 1 222 78889999998863 1111 0 223344 4555666
Q ss_pred cccccccee------eeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchhHHH
Q psy10975 111 GIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182 (574)
Q Consensus 111 ~~e~~G~l~------v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Ia 182 (574)
.++..+.+. ++.++..||.. |||| +||||+|+|.|+++||++.+..+||.. +++|+|+|||||||||++|
T Consensus 148 ~~e~~~~~~~~~~~~~~~~~~~~g~~-qlgtlg~GNhf~Evq~v~~~~d~~~a~~~gl~~-~~v~vm~hsGSrg~G~qi~ 225 (432)
T COG1690 148 RCEDGGVMTGADAAKISDRALQRGLG-QLGSLGSGNHFLEVQAVDRVYDEEAAAPMGLAE-GTVWVMIHTGSRGLGHQIA 225 (432)
T ss_pred ccccccccccccccccchHhhhhhhh-hccCccCCCcceEEEeccccccHhhHhhcCccc-ccEEEEEEeccccccchhH
Confidence 666555443 45667778988 9999 999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCCCCCceeEEE
Q psy10975 183 TDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPDDLDMHVIYD 256 (574)
Q Consensus 183 ~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~~~~~~li~D 256 (574)
++|+..|.++..++++.+|+++|+++|.+|+++++|+.+ +|||| ||++|+ ++++.|.+++ .++||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~s~e~~~y~~am~~A~~~a~~Nr~~i~~~~~~~~~~~~---------~l~~~ 296 (432)
T COG1690 226 TDFVRLAEQAMGRYGIAVPDRQLACVPVDSEDGQAYLAAMAAAANYARANRQLITERVRRALQEVT---------DLLYD 296 (432)
T ss_pred HHHHHHHHHhhhhhcccCcchhhhccccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhe---------eeeee
Confidence 999999999988889999999999999999999999998 89999 999999 9999998766 47899
Q ss_pred cccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccccccCcCCc
Q psy10975 257 VSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGA 336 (574)
Q Consensus 257 ~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~Sa~HGA 336 (574)
++||++|.|.|++ +++||||||||||+ +|||++|||||||+||||+|+. +..||+|+||||
T Consensus 297 v~hN~~~~e~h~~----~~~~vhRKgAt~A~-------------~gq~~lIpgsmgt~syiv~G~~--~~~sf~s~~hGa 357 (432)
T COG1690 297 VHHNLAKKETHNG----EEVIVHRKGATRAF-------------VGQPGLIPGSMGTASYIVRGVG--NEEAFGSTSHGA 357 (432)
T ss_pred cchhhhhHHHhcc----cceeeeccccCHhh-------------cCCceEeecccccceEEEecCc--CcceeeccccCC
Confidence 9999999999975 58999999999995 7999999999999999999964 456999999999
Q ss_pred hhhhhHHHHHhhCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEec
Q psy10975 337 GRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411 (574)
Q Consensus 337 GR~~SR~~Ak~~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg 411 (574)
||+|||++|++.++.+++.+.+..+++.+++.+...++||||+||||+++||+...+++|+++|++++|+.|+||
T Consensus 358 GR~~sr~~ak~~~~~~~v~~~~~~~~~~~r~~~~~~~~eEap~ayK~vd~Vv~~~~~~~lv~~v~r~~pv~~~kg 432 (432)
T COG1690 358 GRVLSRTAAKRKLSGKEVQDALKATGIVVRATSERGVIDEAPEAYKDIDDVIEASHQSGLVEVVARLRPVGVVKG 432 (432)
T ss_pred cceeeHHHHHHhccHHHHHHHHHhcCCEEecCCcceeeeecccccccHHHHHHHHHhcCceeeeeeeeeeEecCC
Confidence 999999999999999888888887799999998889999999999999999999999999999999999999996
No 6
>KOG3833|consensus
Probab=99.94 E-value=3.8e-28 Score=247.47 Aligned_cols=149 Identities=58% Similarity=0.928 Sum_probs=130.0
Q ss_pred EEeeEEEec-cchhHHHHHhhhcccc--cccCccc-e----------------------------------EecccCChH
Q psy10975 403 LRPVAVIKG-IYLNERLAQSMFDHIP--VGVGSKG-I----------------------------------IPMNARDLE 444 (574)
Q Consensus 403 L~Pl~~iKg-~~~~~~~~~~~~~~~~--~~~~~~~-~----------------------------------~~~~~~~~~ 444 (574)
+.|=.++-| -|.+|+|-+.||+.+- |+.|+-| | =.++|-|..
T Consensus 26 F~pnM~veg~fYVn~~Leklm~~EL~~~c~~~~iGgflp~~kQI~nVasLPGivg~sIGLPDiHsGYGF~IGn~AAFD~n 105 (505)
T KOG3833|consen 26 FVPNMNVEGTFYVNEELEKLMFEELKNSCRGGGIGGFLPAVKQIANVASLPGIVGRSIGLPDIHSGYGFAIGNMAAFDMN 105 (505)
T ss_pred CCCCceeeEEEEecHHHHHHHHHHHHhcCCCCccccccHHHHHHhhhhccCcccccccCCCccccccCccccceeeeccC
Confidence 445555554 4789999999998763 4444333 1 135666665
Q ss_pred --HHHHh--cCcccc-------ccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhHHHhCCC
Q psy10975 445 --EALEM--GMDWSL-------REGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYI 513 (574)
Q Consensus 445 --~~~~~--g~~~~l-------~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wav~~Gyg 513 (574)
|.|+| ||+||+ ||||...+|+|+.+.|+++||++||+||||+|.|+++.++|+++|+.|+.|.++.||.
T Consensus 106 nPesVvSPGGVGfDINCGVRlLRTNL~e~~v~p~keqLaq~lFdhIPvGvGS~g~ipm~a~dL~e~LEmG~dw~Lregy~ 185 (505)
T KOG3833|consen 106 NPESVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGRIPMNADDLEEALEMGMDWSLREGYI 185 (505)
T ss_pred CccceecCCccceecccchhhhhhcccccccchHHHHHHHHHHhhCCcccCcCCcccccHHHHHHHHHhcccceeccCcc
Confidence 78888 999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhcCcCCCCCcchhhHHHHhcCCCCCCCCC
Q psy10975 514 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRR 551 (574)
Q Consensus 514 ~~~Dl~~~Ee~G~~~~Adp~~VS~~A~~Rg~~QlG~~~ 551 (574)
|.||.|||||+|+|..|||.+||.|||+||+||||.+.
T Consensus 186 waEDkEhCEeyGrml~aD~~kVs~raKkrGLpQLGTLG 223 (505)
T KOG3833|consen 186 WAEDKEHCEEYGRMLQADPRKVSQRAKKRGLPQLGTLG 223 (505)
T ss_pred hhhhHHHHHHhhhHhhCChHHhhhhhhhcCCccccccC
Confidence 99999999999999999999999999999999999884
No 7
>COG1690 RtcB Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=9.2e-17 Score=173.69 Aligned_cols=109 Identities=28% Similarity=0.452 Sum_probs=104.1
Q ss_pred HHHHh-cCcccc-------ccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhHHHhCCCchh
Q psy10975 445 EALEM-GMDWSL-------REGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE 516 (574)
Q Consensus 445 ~~~~~-g~~~~l-------~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wav~~Gyg~~~ 516 (574)
+++++ |+++|+ +|+|+..|+++++++|.+.||++||+|+|+.+. +++..+|+.++..|+.|+|+.||+|.+
T Consensus 66 g~I~P~gvg~DInCg~~~~rt~l~~~d~k~~~~~L~~~l~~~vp~G~g~~~~-~~~~~~~~~v~~~~~~~~v~~~~~~~~ 144 (432)
T COG1690 66 GVISPGGVGFDINCGVRLLRTNLDREDLQPRLPAVMDRLDRAIPRGVGTAGV-LPDRNTLQEVLTGGARWAVEQGLGVAL 144 (432)
T ss_pred ceEccCCccccccCCchheecccchhhhchhHHHHHHHHHhhCCcccCCCcc-ccchhhhHHHhhccceeeecccccccc
Confidence 77777 899997 899999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCcCCCCCcchhhHHHHhcCCCCCCCCCCCC
Q psy10975 517 DKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTG 554 (574)
Q Consensus 517 Dl~~~Ee~G~~~~Adp~~VS~~A~~Rg~~QlG~~~~~~ 554 (574)
|+.+||+.|++..+++.+||++|++||..|||++...-
T Consensus 145 d~~~~e~~~~~~~~~~~~~~~~~~~~g~~qlgtlg~GN 182 (432)
T COG1690 145 DLERCEDGGVMTGADAAKISDRALQRGLGQLGSLGSGN 182 (432)
T ss_pred cccccccccccccccccccchHhhhhhhhhccCccCCC
Confidence 99999999999999999999999999999999986543
No 8
>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0682 belong to this family.; PDB: 2EPG_B 1UC2_B.
Probab=98.88 E-value=1e-09 Score=119.26 Aligned_cols=92 Identities=38% Similarity=0.637 Sum_probs=70.6
Q ss_pred cCcccc-------ccCCChhhh-hHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhHHHhCCCchhhhhhh
Q psy10975 450 GMDWSL-------REGYIWAED-KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 521 (574)
Q Consensus 450 g~~~~l-------~T~L~~~dv-~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wav~~Gyg~~~Dl~~~ 521 (574)
+|+.|+ +|+|+.+|+ .+++++|.+.|+++||+|+|++++++++..+++++|..|+.|+++++|++++
T Consensus 62 ~VG~DIgCGm~~~~t~l~~~~i~~~~~~~l~~~i~~~ip~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 136 (420)
T PF01139_consen 62 AVGVDIGCGMRLVRTNLKAEDIPRDKLEKLDDAIRKNIPSGVGSHRKIPLSKEDLEEVLEEGAPWLLEKGYGFPE----- 136 (420)
T ss_dssp HC-SSTT-EEEEEEECEEHHHH-GGGHHHHHHHHHHHS--STT---SS---CCCHHHHHHHCHHHHHHTTSS-GG-----
T ss_pred ccccccccceEEEEccCchHhhcchhHHHHHHHHhhhCCCCCCCCCCCcCCHHHHHHHHHhhhHHHHHhhcCCcc-----
Confidence 566665 899999999 5699999999999999999999999999999999999999999999999988
Q ss_pred hhcCcCCCCCcchhhHHHHhcCCCCCCCCCCC
Q psy10975 522 EEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553 (574)
Q Consensus 522 Ee~G~~~~Adp~~VS~~A~~Rg~~QlG~~~~~ 553 (574)
.++++.++.++++|+..|||.+.|.
T Consensus 137 -------~~~~~~~~~~~~~~~~~qLGTLGgG 161 (420)
T PF01139_consen 137 -------EADPSKVSQKARDRGRKQLGTLGGG 161 (420)
T ss_dssp -------T--GGGS-HHHHHHHGGGTT---ST
T ss_pred -------ccchhhccHHHHhhhHhhcCCCCCC
Confidence 7999999999999999999999663
No 9
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=97.93 E-value=3.9e-06 Score=89.76 Aligned_cols=89 Identities=37% Similarity=0.651 Sum_probs=66.4
Q ss_pred cCCCCCchhhhhhhhhhhhhhhhhhccccccceeeeccccCCCCCcccccccceeeeeehhhhhhcHHHHHhcCCCCcce
Q psy10975 86 LGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQ 165 (574)
Q Consensus 86 vG~~~~l~eig~l~~~~d~~~~d~~~~e~~G~l~v~~~agsRg~g~QLGTgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~ 165 (574)
+|++|||.|+|.+.+.+|...+..+.+ ..|+++++.|+|||++|||+++ +|++.. ...+++
T Consensus 121 lGgGNHFiEiq~v~~i~d~~~a~~~Gl-~~g~v~l~iHSGSRglG~~i~~---~~~~~~-----------~~~~l~---- 181 (356)
T TIGR03073 121 IGGGNHFAELQQVDQIYDADALATLGL-DAKQLLLLVHSGSRGLGQAILR---RHVDYF-----------GHNGLP---- 181 (356)
T ss_pred CCCCcceEEEEeeccccCHHHHHHcCC-CCCcEEEEEecCCchhHHHHHH---HHHHHH-----------HHcCCC----
Confidence 788999999988777775544444555 4689999999999999999766 453221 112332
Q ss_pred EEEEEecCCCCchhHHHHHHHHHHHHHHHhCCCCCCcccccc
Q psy10975 166 VCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLAC 207 (574)
Q Consensus 166 v~l~IHSGSRglG~~Ia~~Y~~~~~~a~~~~~~a~~nr~L~~ 207 (574)
.+| ..+++|+++|..++ +|++.||+++.
T Consensus 182 ------~~s-----~~g~~Yl~~m~~A~---~~A~~NR~~i~ 209 (356)
T TIGR03073 182 ------EGS-----PAAAAYLAQHDDAL---RFAKANRQLIA 209 (356)
T ss_pred ------CCC-----HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 234 88999999999888 78999999875
No 10
>PRK09588 hypothetical protein; Reviewed
Probab=97.90 E-value=3.8e-06 Score=90.45 Aligned_cols=89 Identities=36% Similarity=0.604 Sum_probs=67.3
Q ss_pred cCCCCCchhhhhhhhhhhhhhhhhhccccccceeeeccccCCCCCcccccccceeeeeehhhhhhcHHHHHhcCCCCcce
Q psy10975 86 LGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQ 165 (574)
Q Consensus 86 vG~~~~l~eig~l~~~~d~~~~d~~~~e~~G~l~v~~~agsRg~g~QLGTgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~ 165 (574)
+|++|||.|+|.+.+.+|...+....+ +.|+++++.|+|||++|||+++ +|++.. ...+++
T Consensus 132 lGgGNHFiEiq~v~~i~d~~~a~~~gl-~~g~v~l~vHsGSRglG~~v~~---~~~~~~-----------~~~~l~---- 192 (376)
T PRK09588 132 IGGGNHFAELQQVDEIYDAELFALLGL-DADQLLLLVHSGSRGLGQAILR---RHVASF-----------GHNGLP---- 192 (376)
T ss_pred CCCCcceEEEEeeceecCHHHHHHcCC-CCCcEEEEEecCCchhHHHHHH---HHHHHh-----------hhcCCC----
Confidence 888999999988877776555555565 4689999999999999999877 443221 112222
Q ss_pred EEEEEecCCCCchhHHHHHHHHHHHHHHHhCCCCCCcccccc
Q psy10975 166 VCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLAC 207 (574)
Q Consensus 166 v~l~IHSGSRglG~~Ia~~Y~~~~~~a~~~~~~a~~nr~L~~ 207 (574)
.+| +.+++|+++|..|+ +|++.||+++.
T Consensus 193 ------~~s-----~~g~~Yl~~m~~A~---~~A~~NR~~i~ 220 (376)
T PRK09588 193 ------EGS-----DDALAYLAEHDDAL---AFARANRQLIA 220 (376)
T ss_pred ------CCC-----HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 234 88999999999888 78999998875
No 11
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.61 E-value=19 Score=35.90 Aligned_cols=122 Identities=9% Similarity=0.034 Sum_probs=81.1
Q ss_pred HHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhh--hc-ccccccCc
Q psy10975 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSM--FD-HIPVGVGS 432 (574)
Q Consensus 356 ~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~--~~-~~~~~~~~ 432 (574)
+.|+..++....+.. -+.+..++++.+.+.|+--+ + +++|+..-.+.|..+. |. .+.+|.|.
T Consensus 5 ~~l~~~~~~~v~r~~---------~~~~~~~~~~a~~~gGi~~i--E----vt~~~~~~~~~i~~l~~~~~~~~~iGaGT 69 (206)
T PRK09140 5 QPFTKLPLIAILRGI---------TPDEALAHVGALIEAGFRAI--E----IPLNSPDPFDSIAALVKALGDRALIGAGT 69 (206)
T ss_pred hHHHhCCEEEEEeCC---------CHHHHHHHHHHHHHCCCCEE--E----EeCCCccHHHHHHHHHHHcCCCcEEeEEe
Confidence 455666765444321 23455667777777774322 2 2357777666665552 43 47778775
Q ss_pred cceEecccCChHHHHHhcCccccccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhHH
Q psy10975 433 KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSL 508 (574)
Q Consensus 433 ~~~~~~~~~~~~~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wav 508 (574)
.++.++++.++..|++|-+....+.+-++- .....+|.++| -.|.+|+.+....|+++.-
T Consensus 70 ----V~~~~~~~~a~~aGA~fivsp~~~~~v~~~-------~~~~~~~~~~G-----~~t~~E~~~A~~~Gad~vk 129 (206)
T PRK09140 70 ----VLSPEQVDRLADAGGRLIVTPNTDPEVIRR-------AVALGMVVMPG-----VATPTEAFAALRAGAQALK 129 (206)
T ss_pred ----cCCHHHHHHHHHcCCCEEECCCCCHHHHHH-------HHHCCCcEEcc-----cCCHHHHHHHHHcCCCEEE
Confidence 456678999999999999998777433222 22468899998 4588999999999988763
No 12
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.60 E-value=1.4e+02 Score=30.45 Aligned_cols=122 Identities=19% Similarity=0.289 Sum_probs=78.1
Q ss_pred HHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhh------hccc
Q psy10975 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSM------FDHI 426 (574)
Q Consensus 353 ~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~------~~~~ 426 (574)
++.+.|.+.++....+.. -..+.-++++.+.+.|+--+=-+++ .+.-.+.+.++. |..+
T Consensus 7 ~~~~~l~~~~vi~Vvr~~---------~~~~a~~~~~al~~gGi~~iEiT~~------tp~a~~~i~~l~~~~~~~~p~~ 71 (222)
T PRK07114 7 AVLTAMKATGMVPVFYHA---------DVEVAKKVIKACYDGGARVFEFTNR------GDFAHEVFAELVKYAAKELPGM 71 (222)
T ss_pred HHHHHHHhCCEEEEEEcC---------CHHHHHHHHHHHHHCCCCEEEEeCC------CCcHHHHHHHHHHHHHhhCCCe
Confidence 556677777876444321 1223445667777777643322332 444445444332 4557
Q ss_pred ccccCccceEecccCChHHHHHhcCccccccCCChhhhhHHHHHHHHH-HHhcCCCCCCCCCcccCCHHHHHHHHHhhhH
Q psy10975 427 PVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQS-MFDHIPVGVGSKGIIPMNARDLEEALEMGMD 505 (574)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~-Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~ 505 (574)
-+|.|. .++..++++++..|++|-+.-+++.+ |++. .-.+||.==|. +|.+|+.+.++.|++
T Consensus 72 ~vGaGT----Vl~~e~a~~a~~aGA~FiVsP~~~~~--------v~~~~~~~~i~~iPG~-----~TpsEi~~A~~~Ga~ 134 (222)
T PRK07114 72 ILGVGS----IVDAATAALYIQLGANFIVTPLFNPD--------IAKVCNRRKVPYSPGC-----GSLSEIGYAEELGCE 134 (222)
T ss_pred EEeeEe----CcCHHHHHHHHHcCCCEEECCCCCHH--------HHHHHHHcCCCEeCCC-----CCHHHHHHHHHCCCC
Confidence 899886 47888999999999999999888842 3322 22566654343 589999999999987
Q ss_pred h
Q psy10975 506 W 506 (574)
Q Consensus 506 W 506 (574)
+
T Consensus 135 ~ 135 (222)
T PRK07114 135 I 135 (222)
T ss_pred E
Confidence 6
No 13
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=40.94 E-value=97 Score=30.68 Aligned_cols=129 Identities=11% Similarity=0.089 Sum_probs=71.0
Q ss_pred HHHHhCCeEEEEcC-Cccccccccccc-cChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhhhcccccc-cCc
Q psy10975 356 NKLESQGISIRVAS-PKLVMEEAPESY-KNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVG-VGS 432 (574)
Q Consensus 356 ~~L~~~gi~~~~~~-~~~l~eEAP~AY-KdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~~~~~~~~-~~~ 432 (574)
+.|. .||.+.|.- ... |.+- -++.++.+.+.++|+.-.. + +..-.-+.++.. ..||+- +=.
T Consensus 5 ~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~a~~~~~~G~~~~~--------~-~~~~~~~~i~~~-~~iPil~~~~ 68 (219)
T cd04729 5 EQLK-GGLIVSCQALPGE-----PLHSPEIMAAMALAAVQGGAVGIR--------A-NGVEDIRAIRAR-VDLPIIGLIK 68 (219)
T ss_pred HHhc-CCeEEEccCCCCC-----CcCcHHHHHHHHHHHHHCCCeEEE--------c-CCHHHHHHHHHh-CCCCEEEEEe
Confidence 4554 588888832 122 2232 2567777777777764211 1 222222222322 468872 113
Q ss_pred cceE----ecccC--ChHHHHHhcCccccccCCCh------hhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHH
Q psy10975 433 KGII----PMNAR--DLEEALEMGMDWSLREGYIW------AEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEAL 500 (574)
Q Consensus 433 ~~~~----~~~~~--~~~~~~~~g~~~~l~T~L~~------~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl 500 (574)
++|. .+.++ .++++++.|+++ +.+++.. ++++..++++. +++ .+|.-++. .|.++.....
T Consensus 69 ~~~~~~~~~ig~~~~~~~~a~~aGad~-I~~~~~~~~~p~~~~~~~~i~~~~-~~g-~~~iiv~v-----~t~~ea~~a~ 140 (219)
T cd04729 69 RDYPDSEVYITPTIEEVDALAAAGADI-IALDATDRPRPDGETLAELIKRIH-EEY-NCLLMADI-----STLEEALNAA 140 (219)
T ss_pred cCCCCCCceeCCCHHHHHHHHHcCCCE-EEEeCCCCCCCCCcCHHHHHHHHH-HHh-CCeEEEEC-----CCHHHHHHHH
Confidence 3431 24445 778899999996 4444332 24444443333 334 67766643 3677888888
Q ss_pred HhhhHhHH
Q psy10975 501 EMGMDWSL 508 (574)
Q Consensus 501 ~~Ga~Wav 508 (574)
..|+.|.+
T Consensus 141 ~~G~d~i~ 148 (219)
T cd04729 141 KLGFDIIG 148 (219)
T ss_pred HcCCCEEE
Confidence 99999875
No 14
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=38.04 E-value=28 Score=32.42 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCc-eeEeEEEEeeEEEeccch-hHHHHHhh
Q psy10975 351 YQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGI-SKKTFKLRPVAVIKGIYL-NERLAQSM 422 (574)
Q Consensus 351 ~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl-~~~VarL~Pl~~iKg~~~-~~~~~~~~ 422 (574)
.....+.|+++|+.+...+ +.+.|+|+..-..|.+.|+..|. +=+|.-+-=-++.+|.|. +|||++.+
T Consensus 29 ~a~~~~~Lk~~gv~v~RyN----L~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~ 98 (123)
T PF06953_consen 29 FAADLDWLKEQGVEVERYN----LAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWL 98 (123)
T ss_dssp HHHHHHHHHHTT-EEEEEE----TTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHH
T ss_pred HHHHHHHHHhCCceEEEEc----cccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHh
Confidence 3455678888999887655 78899999999999999987776 445555555667788886 57787754
No 15
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=28.52 E-value=33 Score=30.33 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=41.5
Q ss_pred ccceEecccCChHHHHHhcCccccccCCChhhhhHHHHHHHHHHHhcCCCCCC
Q psy10975 432 SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVG 484 (574)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG 484 (574)
++|||.+|=+-++.-+.+-.+-.- ...+..|+....+++.+-|=+++|..+|
T Consensus 39 ~~G~i~Vnw~kl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~g 90 (100)
T PF04930_consen 39 SKGYIKVNWDKLEKDVKKALDQNK-GKFDAPDIKSLWNKLMDFLKSNLPFSAG 90 (100)
T ss_pred HCCeEEECHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHHHHHHcCccHhHH
Confidence 689999999988876666333222 7888899999999999999899998765
No 16
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.62 E-value=78 Score=31.92 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=64.9
Q ss_pred cCccccccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhHHHhCCCchhhhhhhhhcCcC--
Q psy10975 450 GMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRM-- 527 (574)
Q Consensus 450 g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wav~~Gyg~~~Dl~~~Ee~G~~-- 527 (574)
|++.-=-| |+-.+-...+++|.++ |.++-.|.|+. ++..|.++....||+|.|--++-. +=++.|-+.|..
T Consensus 40 Gi~~iEit-l~~~~~~~~I~~l~~~-~p~~~IGAGTV----l~~~~a~~a~~aGA~FivsP~~~~-~vi~~a~~~~i~~i 112 (212)
T PRK05718 40 GLPVLEVT-LRTPAALEAIRLIAKE-VPEALIGAGTV----LNPEQLAQAIEAGAQFIVSPGLTP-PLLKAAQEGPIPLI 112 (212)
T ss_pred CCCEEEEe-cCCccHHHHHHHHHHH-CCCCEEEEeec----cCHHHHHHHHHcCCCEEECCCCCH-HHHHHHHHcCCCEe
Confidence 56644343 5555666677777754 55666677664 778999999999999999999876 778889888753
Q ss_pred CC-CCcchhhHHHHhcCCCCCC
Q psy10975 528 LN-ADPSKVSMRAKKRGLPQVS 548 (574)
Q Consensus 528 ~~-Adp~~VS~~A~~Rg~~QlG 548 (574)
+| .+|+.+. .|.+-|.+.+-
T Consensus 113 PG~~TptEi~-~a~~~Ga~~vK 133 (212)
T PRK05718 113 PGVSTPSELM-LGMELGLRTFK 133 (212)
T ss_pred CCCCCHHHHH-HHHHCCCCEEE
Confidence 33 4577654 48888877653
No 17
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.96 E-value=2.8e+02 Score=27.15 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=75.8
Q ss_pred HHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHH--HHhhhccccccc
Q psy10975 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERL--AQSMFDHIPVGV 430 (574)
Q Consensus 353 ~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~--~~~~~~~~~~~~ 430 (574)
++.+.|...++....+.. -+.+.-++++.+.+.|+-- -++ +.|...-.|.+ ++.++..+-+|
T Consensus 4 ~~~~~l~~~~~~~v~r~~---------~~~~~~~~~~~~~~~Gv~~--vql----r~k~~~~~e~~~~~~~~~~~~~~g- 67 (187)
T PRK07455 4 DWLAQLQQHRAIAVIRAP---------DLELGLQMAEAVAAGGMRL--IEI----TWNSDQPAELISQLREKLPECIIG- 67 (187)
T ss_pred HHHHHHHhCCEEEEEEcC---------CHHHHHHHHHHHHHCCCCE--EEE----eCCCCCHHHHHHHHHHhCCCcEEe-
Confidence 456777777775444321 2333444666666667422 232 35666655433 44455543344
Q ss_pred CccceEecccCChHHHHHhcCccccccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhH
Q psy10975 431 GSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS 507 (574)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wa 507 (574)
-|.+.++ +++|.++..|+++-..-.+..++++-.. .+- - ..|| | -.|.+|+.+.+..|+++.
T Consensus 68 --~gtvl~~-d~~~~A~~~gAdgv~~p~~~~~~~~~~~-~~~-~--~~i~-G-------~~t~~e~~~A~~~Gadyv 129 (187)
T PRK07455 68 --TGTILTL-EDLEEAIAAGAQFCFTPHVDPELIEAAV-AQD-I--PIIP-G-------ALTPTEIVTAWQAGASCV 129 (187)
T ss_pred --EEEEEcH-HHHHHHHHcCCCEEECCCCCHHHHHHHH-HcC-C--CEEc-C-------cCCHHHHHHHHHCCCCEE
Confidence 3567777 9999999999999988888866554322 110 0 2344 3 358899999999998875
No 18
>KOG0741|consensus
Probab=26.83 E-value=92 Score=36.16 Aligned_cols=138 Identities=18% Similarity=0.178 Sum_probs=86.5
Q ss_pred CeEEEE-cCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhhhcccccccCccceEeccc
Q psy10975 362 GISIRV-ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNA 440 (574)
Q Consensus 362 gi~~~~-~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (574)
+|-|.. .+++.++|||=--=-- ++.+.+..|=..-.||. |+.|-.++..| .+++. +-
T Consensus 369 NILVIGMTNR~DlIDEALLRPGR----lEVqmEIsLPDE~gRlQ-Il~IHT~rMre----------------~~~l~-~d 426 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGR----LEVQMEISLPDEKGRLQ-ILKIHTKRMRE----------------NNKLS-AD 426 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCc----eEEEEEEeCCCccCceE-EEEhhhhhhhh----------------cCCCC-CC
Confidence 566554 5677888887211000 12333333444444443 44555444433 12222 23
Q ss_pred CChHHHHHhcCccccccCCChhhhhHHHHHHH-HHHHhcCCCC------CCCCCcccCCHHHHHHHHHhhhHhHHHhCCC
Q psy10975 441 RDLEEALEMGMDWSLREGYIWAEDKEHFERLA-QSMFDHIPVG------VGSKGIIPMNARDLEEALEMGMDWSLREGYI 513 (574)
Q Consensus 441 ~~~~~~~~~g~~~~l~T~L~~~dv~~~~~~L~-d~Lf~~iP~G------vG~~g~~~l~~~~l~~vl~~Ga~Wav~~Gyg 513 (574)
-|++|.-. ++-|.+=.|++...+.-. -++.+.|-+| ...--.|+++..|+...|.. |+-.||
T Consensus 427 Vdl~elA~------lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~d-----VkPAFG 495 (744)
T KOG0741|consen 427 VDLKELAA------LTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALED-----VKPAFG 495 (744)
T ss_pred cCHHHHHH------HhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHh-----cCcccC
Confidence 35666542 566888889988876655 7888999988 12224678899998888874 788898
Q ss_pred c-hhhhhhhhhcCcCCCCCc
Q psy10975 514 W-AEDKEHCEEYGRMLNADP 532 (574)
Q Consensus 514 ~-~~Dl~~~Ee~G~~~~Adp 532 (574)
. +|||++|+.+|.+....|
T Consensus 496 ~see~l~~~~~~Gmi~~g~~ 515 (744)
T KOG0741|consen 496 ISEEDLERFVMNGMINWGPP 515 (744)
T ss_pred CCHHHHHHHHhCCceeeccc
Confidence 6 679999999999987665
No 19
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=25.34 E-value=1.5e+02 Score=29.24 Aligned_cols=71 Identities=24% Similarity=0.238 Sum_probs=34.6
Q ss_pred ccccccCccceEecccCChHHHHHhcCcccc--ccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCccc-CCHHHHHHHHH
Q psy10975 425 HIPVGVGSKGIIPMNARDLEEALEMGMDWSL--REGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIP-MNARDLEEALE 501 (574)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l--~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~-l~~~~l~~vl~ 501 (574)
.||+-++ |+|... ..++++++.|+|+-+ .+.+..++++. +.+.. ..+ |+-. .+- -+.+|+.+++.
T Consensus 72 ~iPi~~~--~~i~~~-~~v~~~~~~Gad~v~l~~~~~~~~~~~~----~~~~~-~~~--g~~~--~v~v~~~~e~~~~~~ 139 (217)
T cd00331 72 SLPVLRK--DFIIDP-YQIYEARAAGADAVLLIVAALDDEQLKE----LYELA-REL--GMEV--LVEVHDEEELERALA 139 (217)
T ss_pred CCCEEEC--CeecCH-HHHHHHHHcCCCEEEEeeccCCHHHHHH----HHHHH-HHc--CCeE--EEEECCHHHHHHHHH
Confidence 4565553 344333 367777777887776 45555433332 22222 111 2221 111 15666666666
Q ss_pred hhhHhH
Q psy10975 502 MGMDWS 507 (574)
Q Consensus 502 ~Ga~Wa 507 (574)
.|+.+.
T Consensus 140 ~g~~~i 145 (217)
T cd00331 140 LGAKII 145 (217)
T ss_pred cCCCEE
Confidence 665554
No 20
>PF04843 Herpes_teg_N: Herpesvirus tegument protein, N-terminal conserved region; InterPro: IPR006928 Herpesvirus UL36 encodes the largest herpes simplex virus protein, also designated VP1/2, which is a component of the virion tegument. The N-terminal domain, of approximately 500aa, encodes a ubiquitin-specific protease (USP) that belongs to MEROPS peptidase family C76 (UL36 deubiquitinylating peptidase, clan CA). It is conserved across the herpesviridae and accumulates as a cleavage product of UL36 during late viral replication []. The conservation of UL36-USP across all members of the herpesviridae and the absolute conservation of the active site residues imply that UL36-USP plays an important role the herpesvirus life cycle.
Probab=24.71 E-value=45 Score=32.65 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHhhhHhHHH
Q psy10975 490 PMNARDLEEALEMGMDWSLR 509 (574)
Q Consensus 490 ~l~~~~l~~vl~~Ga~Wav~ 509 (574)
-++.++||.||.+|++|--.
T Consensus 36 ~ls~~~LD~iL~~G~~l~~~ 55 (172)
T PF04843_consen 36 VLSRDDLDGILDEGARLDRI 55 (172)
T ss_pred cccHhHHHHHHHhhhHHHHH
Confidence 47899999999999999653
No 21
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=24.09 E-value=3.3e+02 Score=28.85 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=38.2
Q ss_pred HhhCCHHHHHHHHHhCCeEEE-EcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHH
Q psy10975 346 RRNLDYQEVLNKLESQGISIR-VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQ 420 (574)
Q Consensus 346 k~~~~~~~~~~~L~~~gi~~~-~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~ 420 (574)
++.++.+++.+.+.+.|+.+. ...-+ |..++++.++++.+.+.|+- -.++=-|..|++.+.+
T Consensus 56 ~~~ls~ee~~~~i~e~g~~~V~i~GGE------PLL~pdl~eiv~~~~~~g~~-------v~l~TNG~ll~~~~~~ 118 (318)
T TIGR03470 56 KQRLSVEECLRAVDECGAPVVSIPGGE------PLLHPEIDEIVRGLVARKKF-------VYLCTNALLLEKKLDK 118 (318)
T ss_pred ccCCCHHHHHHHHHHcCCCEEEEeCcc------ccccccHHHHHHHHHHcCCe-------EEEecCceehHHHHHH
Confidence 345677777777766665322 22223 55678999999988776642 2344456677766544
No 22
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.38 E-value=3.5e+02 Score=28.89 Aligned_cols=115 Identities=11% Similarity=0.190 Sum_probs=67.5
Q ss_pred cccccC--hhHHHhhccccCceeEeEEEE---eeEEEeccchhHHHHHhhhcccccccCccce--EecccC-----ChHH
Q psy10975 378 PESYKN--VTDVVDTCHAVGISKKTFKLR---PVAVIKGIYLNERLAQSMFDHIPVGVGSKGI--IPMNAR-----DLEE 445 (574)
Q Consensus 378 P~AYKd--I~~Vv~~~~~~gl~~~VarL~---Pl~~iKg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~ 445 (574)
|...+| +.++++.+.....++.+ ++. |++ =-..+.++|++.+-++ |.+-+ +++|-. .+.+
T Consensus 153 PL~~~d~~L~~ll~~l~~i~~~~~i-ri~tr~~~~--~p~rit~el~~~L~~~-----~~~~~~~~h~dh~~Ei~d~~~~ 224 (321)
T TIGR03821 153 PLMAKDHRLDWLLNLLEQIPHLKRL-RIHTRLPVV--IPDRITSGLCDLLANS-----RLQTVLVVHINHANEIDAEVAD 224 (321)
T ss_pred cccCCchHHHHHHHHHHhCCCCcEE-EEecCccee--eHHHhhHHHHHHHHhc-----CCcEEEEeeCCChHhCcHHHHH
Confidence 667777 88888777654444443 222 322 1136778888866543 33333 455532 2234
Q ss_pred HHHh----cCccccccCCChh--hhhHHHHHHHHH----------HHhcCCCCCCCCCcccCCHHHHHHHHHh
Q psy10975 446 ALEM----GMDWSLREGYIWA--EDKEHFERLAQS----------MFDHIPVGVGSKGIIPMNARDLEEALEM 502 (574)
Q Consensus 446 ~~~~----g~~~~l~T~L~~~--dv~~~~~~L~d~----------Lf~~iP~GvG~~g~~~l~~~~l~~vl~~ 502 (574)
|+.. |+.....|-|.+. |=...+.+|.+. ||.-+|+| |.+ ...++.++..+++..
T Consensus 225 ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~g-g~~-~f~v~~~~~~~i~~~ 295 (321)
T TIGR03821 225 ALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQ-GAA-HFDVDDERARALMAE 295 (321)
T ss_pred HHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCC-Ccc-cccCCHHHHHHHHHH
Confidence 4443 9988888888542 222233344433 45678888 544 688999999888653
No 23
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=21.54 E-value=50 Score=29.87 Aligned_cols=84 Identities=24% Similarity=0.230 Sum_probs=59.9
Q ss_pred HHHHhcCccccccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhHHHhCCCchh-hhhhhhh
Q psy10975 445 EALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE-DKEHCEE 523 (574)
Q Consensus 445 ~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wav~~Gyg~~~-Dl~~~Ee 523 (574)
+.|+.|.+..+....+.+++...+++ +|.|+-. .+. +++.+.|+.. .+.+|-...|-|... |++.|-+
T Consensus 13 ~~l~~~~~v~~~~~~~~~~~~~~l~~-~d~ii~~----~~~----~~~~~~l~~~--~~Lk~I~~~~~G~d~id~~~a~~ 81 (133)
T PF00389_consen 13 ERLEEGFEVEFCDSPSEEELAERLKD-ADAIIVG----SGT----PLTAEVLEAA--PNLKLISTAGAGVDNIDLEAAKE 81 (133)
T ss_dssp HHHHHTSEEEEESSSSHHHHHHHHTT-ESEEEES----TTS----TBSHHHHHHH--TT-SEEEESSSSCTTB-HHHHHH
T ss_pred HHHHCCceEEEeCCCCHHHHHHHhCC-CeEEEEc----CCC----CcCHHHHhcc--ceeEEEEEcccccCcccHHHHhh
Confidence 66777777777777777777766644 4554422 111 6888888776 889999888877755 9999999
Q ss_pred cCcC----CCCCcchhhHHH
Q psy10975 524 YGRM----LNADPSKVSMRA 539 (574)
Q Consensus 524 ~G~~----~~Adp~~VS~~A 539 (574)
+|.. +|+.+..|++.|
T Consensus 82 ~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 82 RGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTSEEEE-TTTTHHHHHHHH
T ss_pred CeEEEEEeCCcCCcchhccc
Confidence 9964 678888888877
No 24
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=21.44 E-value=2e+02 Score=30.54 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhhhc--ccc
Q psy10975 350 DYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFD--HIP 427 (574)
Q Consensus 350 ~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~~~--~~~ 427 (574)
+.+++++-++.-.+-+...-|... ++.++.+++. ..+++..-.|+||+ +++-+.+-. .+|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~-------~~Ea~~L~ea--GvDiIDaT~r~rP~---------~~~~~~iK~~~~~l 114 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGH-------FVEAQILEAL--GVDMIDESEVLTPA---------DEEHHIDKHKFKVP 114 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhH-------HHHHHHHHHc--CCCEEeccCCCCcH---------HHHHHHHHHHcCCc
Confidence 456666666655555554333433 7777888774 45677655567882 223232222 333
Q ss_pred cccCccceEecccCChHHHHHh---cCccccccCC
Q psy10975 428 VGVGSKGIIPMNARDLEEALEM---GMDWSLREGY 459 (574)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~---g~~~~l~T~L 459 (574)
+-++.++||||+.- |+|+ ++|-|
T Consensus 115 --------~MAD~stleEal~a~~~Gad~-I~TTl 140 (283)
T cd04727 115 --------FVCGARNLGEALRRISEGAAM-IRTKG 140 (283)
T ss_pred --------EEccCCCHHHHHHHHHCCCCE-EEecC
Confidence 57899999998766 8887 45554
No 25
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.00 E-value=81 Score=33.10 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=48.6
Q ss_pred EecccCChHHHH---HhcCccccccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhH
Q psy10975 436 IPMNARDLEEAL---EMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMD 505 (574)
Q Consensus 436 ~~~~~~~~~~~~---~~g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~ 505 (574)
|-+..+++||++ +.|+|.=+..|.+.++++...+ +....+.+++ +=..|.| +.+.+.+...-|++
T Consensus 185 I~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~-~~~~~~~~~~--ieAsGgI--t~~ni~~ya~~GvD 252 (273)
T PRK05848 185 IEIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVA-YRNANYPHVL--LEASGNI--TLENINAYAKSGVD 252 (273)
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH-HhhccCCCeE--EEEECCC--CHHHHHHHHHcCCC
Confidence 666778888655 4599999999999999988774 3444454544 5556666 88999999888875
No 26
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.35 E-value=3.6e+02 Score=27.20 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=79.8
Q ss_pred HHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhhhc--cccccc
Q psy10975 353 EVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFD--HIPVGV 430 (574)
Q Consensus 353 ~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~~~--~~~~~~ 430 (574)
++.+.|...++....+.. -+.+.-.+++.+.+.|+--+=-+++ +=.+.+.-++|.+..-+ .+-+|.
T Consensus 5 ~~~~~l~~~~vi~vir~~---------~~~~a~~~~~al~~~Gi~~iEit~~---~~~a~~~i~~l~~~~~~~p~~~vGa 72 (213)
T PRK06552 5 EILTKLKANGVVAVVRGE---------SKEEALKISLAVIKGGIKAIEVTYT---NPFASEVIKELVELYKDDPEVLIGA 72 (213)
T ss_pred HHHHHHHHCCEEEEEECC---------CHHHHHHHHHHHHHCCCCEEEEECC---CccHHHHHHHHHHHcCCCCCeEEee
Confidence 345677777876444321 3445667778887777643333333 12233344555554322 488998
Q ss_pred CccceEecccCChHHHHHhcCccccccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhH
Q psy10975 431 GSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS 507 (574)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wa 507 (574)
|. .++..+++.++..|.+|-+.-+++.+=++ . ..-..||.=-|. .|.+|+.+.+..|+++.
T Consensus 73 GT----V~~~~~~~~a~~aGA~FivsP~~~~~v~~-~------~~~~~i~~iPG~-----~T~~E~~~A~~~Gad~v 133 (213)
T PRK06552 73 GT----VLDAVTARLAILAGAQFIVSPSFNRETAK-I------CNLYQIPYLPGC-----MTVTEIVTALEAGSEIV 133 (213)
T ss_pred ee----CCCHHHHHHHHHcCCCEEECCCCCHHHHH-H------HHHcCCCEECCc-----CCHHHHHHHHHcCCCEE
Confidence 86 46788999999999999998888743222 1 223566654343 37899999999998764
Done!