Query psy10975
Match_columns 574
No_of_seqs 301 out of 1318
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 23:14:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dwr_B PHO HYP2 intein, tRNA-s 100.0 8E-111 3E-115 911.9 25.6 399 1-416 22-486 (487)
2 2epg_A Hypothetical protein TT 100.0 1E-107 5E-112 883.9 16.7 387 1-411 30-487 (487)
3 2epg_A Hypothetical protein TT 99.8 3E-21 1E-25 209.6 5.4 117 437-553 86-213 (487)
4 4dwr_B PHO HYP2 intein, tRNA-s 99.8 5.8E-21 2E-25 207.8 5.6 116 438-553 77-201 (487)
5 1yxy_A Putative N-acetylmannos 40.4 58 0.002 30.8 7.1 137 350-507 6-157 (234)
6 3igs_A N-acetylmannosamine-6-p 38.9 58 0.002 31.5 6.8 133 352-508 8-154 (232)
7 4e38_A Keto-hydroxyglutarate-a 31.4 42 0.0014 32.9 4.5 124 352-507 25-151 (232)
8 3ktb_A Arsenical resistance op 26.2 32 0.0011 30.0 2.3 67 352-422 33-101 (106)
9 3q58_A N-acetylmannosamine-6-p 23.2 1.8E+02 0.0063 27.9 7.4 135 351-508 7-154 (229)
10 3kgk_A Arsenical resistance op 22.4 36 0.0012 29.9 1.8 67 352-422 30-98 (110)
11 3a9f_A Cytochrome C; alpha hel 22.1 57 0.0019 27.4 3.0 34 327-360 35-70 (92)
12 4gim_A Pseudouridine-5'-phosph 21.8 1.8E+02 0.0061 30.2 7.1 77 348-441 166-260 (335)
13 3to5_A CHEY homolog; alpha(5)b 21.6 76 0.0026 27.9 3.9 58 411-474 72-133 (134)
No 1
>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A*
Probab=100.00 E-value=7.8e-111 Score=911.93 Aligned_cols=399 Identities=41% Similarity=0.654 Sum_probs=363.3
Q ss_pred CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc----c-------cc
Q psy10975 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ----W-------LS 69 (574)
Q Consensus 1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p----~-------~~ 69 (574)
||||++||+|+.|++.|.++ +|++||.|+|+||||++++++|||+|+|||+| . ++
T Consensus 22 m~vp~~i~~~~~~~~~~~~d--------------~a~~Ql~n~A~LPgi~~~~~~MPD~H~G~G~pIG~V~a~~~~~g~I 87 (487)
T 4dwr_B 22 MRVPGRVYADEVLLEKMKND--------------RTLEQATNVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVKEGVI 87 (487)
T ss_dssp CSSCEEEECCHHHHHHHHTS--------------SHHHHHHHHTTSTTBCSCEEEEEEEECCSSSCEEEEEEEETTTCEE
T ss_pred ccceEEEEeCHHHhhhhcch--------------HHHHHHHHHhcCCChhcceeeCCcCCCCCCCCEEEEEEecCcCCEE
Confidence 99999999999999998765 49999999999999999889999999999999 1 24
Q ss_pred CCcc---------c--ccc----------------ccCCCCcccCCCCC-------chhh---h---hhhhhhhhhhhhh
Q psy10975 70 DNTM---------R--SSN----------------IWKRSPLTLGAGNH-------YAEI---Q---IVDEIYDKWAASK 109 (574)
Q Consensus 70 ~p~~---------r--~t~----------------I~~~IP~GvG~~~~-------l~ei---g---~l~~~~d~~~~d~ 109 (574)
.|+. + +|+ |++.||+|+++.+. ++++ + .+..+| .|..|+
T Consensus 88 ~P~~VG~DIgCGm~l~~t~l~~~dl~~~l~~l~~~i~~~iP~G~g~~~~~~~~~~~~~~~l~~g~~w~~~~g~-~~~~dl 166 (487)
T 4dwr_B 88 SPGGIGYDINCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGY-GWERDL 166 (487)
T ss_dssp CGGGTCSSTTCEEEEECCSCBHHHHGGGHHHHHHHHHHHSCCSSSTTCCCCCCGGGCHHHHHHTHHHHHHTTS-SCGGGG
T ss_pred ecCCceecccCeeEEEecCCCHHHHhHHHHHHHHHHHhhCCCCcCccCccccchhhhhHHHhhhHHHHHhccc-chHhHH
Confidence 5776 1 222 77889999998762 2221 1 344555 678888
Q ss_pred hcccccccee------eeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchhHH
Q psy10975 110 MGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 181 (574)
Q Consensus 110 ~~~e~~G~l~------v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~I 181 (574)
+.+++.|++. ++..+..|+.. |||| +||||||||.+|+|||++.|++|||.+ +++||||||||||||++|
T Consensus 167 ~~~ee~g~~~~~d~~~v~~~~~~r~~~-qLGTLGgGNHFiEvq~vd~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~~I 244 (487)
T 4dwr_B 167 ERLEEGGRMEGADPEAVSQRAKQRGAP-QLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQV 244 (487)
T ss_dssp GGSGGGGCCTTCCGGGSCHHHHHHHGG-GTTCCCSSSCEEEEEEEEEESCHHHHHHTTCCT-TBEEEEEEECCHHHHHHH
T ss_pred HHHHhcCCcccCChHHHhHHHHhhhhh-hccCCCCCceeEEEeeeehhcCHHHHHHcCCCc-CcEEEEEECCCCcccHHH
Confidence 8888887764 56666778887 9999 999999999999999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCC-CCCceeE
Q psy10975 182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPD-DLDMHVI 254 (574)
Q Consensus 182 a~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~-~~~~~li 254 (574)
|++|++.+.++++++++++|+++|+|+|++|++|++||.+ +|||| ||++|+ +++++|.++|+..++ ++++.++
T Consensus 245 a~~~~~~a~~~~~~~~~~~pd~~la~~~~~s~eg~~Yl~am~~A~~yA~~NR~~i~~~v~~~~~~~~~~~~~~~l~~~~~ 324 (487)
T 4dwr_B 245 ASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIV 324 (487)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSTTCCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCCCChhhccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCccccccccee
Confidence 9999999999999999999999999999999999999999 89999 999999 999999999998754 5678899
Q ss_pred EEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccccccCcC
Q psy10975 255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH 334 (574)
Q Consensus 255 ~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~Sa~H 334 (574)
|||+|||+++|.|+++|+.+++|||||||||||||+|+.+|..|+..||||||||||||+||||+|+++||++||+||||
T Consensus 325 ~dv~HN~~~~E~h~~~g~~~~~~VHRKGAt~A~~~~~~~~p~~~~~~Gq~viIPGSMgt~SyIv~G~~~g~~~s~~S~~H 404 (487)
T 4dwr_B 325 YDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIPGSMGTASYILAGTEGAMKETFGSTCH 404 (487)
T ss_dssp EEEESEEEEEEEEEETTEEEEEEEEEESEEECCCTTCTTSCGGGTTTCCEEEECCSTTSCEEEEECCHHHHHHSSSEEEC
T ss_pred eeeecccceeeeeeeccccceEEEEecccccccCCCCcccchhhhccCCeEEeccCCCCceEEEEeCCCCChhhhcCCCc
Confidence 99999999999999999888999999999999999999999999999999999999999999999976688999999999
Q ss_pred CchhhhhHHHHHhhCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccch
Q psy10975 335 GAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYL 414 (574)
Q Consensus 335 GAGR~~SR~~Ak~~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~ 414 (574)
||||+|||++||++++.++++++|.++||.++|.++++++||||+|||||++||++++++||+++|++||||+||||..-
T Consensus 405 GAGR~mSR~~Ak~~~~~~~~~~~l~~~Gi~v~~~~~~~v~dEaP~AYKdId~Vi~~~~~~gLv~vVa~LkPv~~iKGge~ 484 (487)
T 4dwr_B 405 GAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKGAAA 484 (487)
T ss_dssp SCCBSSCHHHHHTSSCHHHHHHHHHHTTCEEECSCSHHHHHTCGGGBCCHHHHHHHHHHHTSSEEEEEEEEEEEECCCCC
T ss_pred ccchhhhHHHHHhhcCHHHHHHHHHhCCeEEEECCCCcCcccChhccCCHHHHHHHHHhcCCeEEEEEEEEEEEEecCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hH
Q psy10975 415 NE 416 (574)
Q Consensus 415 ~~ 416 (574)
+|
T Consensus 485 ~e 486 (487)
T 4dwr_B 485 LE 486 (487)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 2
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-107 Score=883.91 Aligned_cols=387 Identities=40% Similarity=0.641 Sum_probs=310.5
Q ss_pred CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHh--HHHHHHHHhcCCCceeeeeecccCCCCCCCc-------c----
Q psy10975 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLP--GVKQIANVAALPGIVGRSVGLPDVHSVPSTQ-------W---- 67 (574)
Q Consensus 1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p-------~---- 67 (574)
|+||+.||+++.+++.|..+ . |++||.|+|+||++++++++|||+|+|||+| +
T Consensus 30 ~~vp~~i~~~~~~~~~ie~~--------------~~~a~~Ql~nva~LPgi~~~~~~MPD~H~G~G~pIG~V~a~~~~~~ 95 (487)
T 2epg_A 30 MRVDAVFFASKEILKDLEAE--------------NYASLQQLMNVATLPGIVEPALAMPDIHWGYGFPIGGVAAFDPEEG 95 (487)
T ss_dssp CSSCEEEECCHHHHHHHHHT--------------TTHHHHHHHHHTTSTTBCSCEEEEEEEECCSSSCEEEEEEECGGGT
T ss_pred CCceEEEEECcchhhhhccc--------------cHHHHHHHHHHhcCCChhhceeeCCCcCCCCCCccceEEEeccCCC
Confidence 89999999999999887314 4 9999999999999999888999999999999 2
Q ss_pred -ccCCcc---------c--ccc----------------ccCCCCcccCCCC-C-------chhh---h---hhhhhhhhh
Q psy10975 68 -LSDNTM---------R--SSN----------------IWKRSPLTLGAGN-H-------YAEI---Q---IVDEIYDKW 105 (574)
Q Consensus 68 -~~~p~~---------r--~t~----------------I~~~IP~GvG~~~-~-------l~ei---g---~l~~~~d~~ 105 (574)
.+.|+. + +|+ |+++||+|+++++ . ++++ + .++++| .+
T Consensus 96 g~I~P~~VG~DIgCGm~l~~T~L~~~d~~~~l~~L~~~l~~~iP~G~g~~~~~~~~~~~~~~~~~~~g~~w~~~~g~-~~ 174 (487)
T 2epg_A 96 GVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGY-GY 174 (487)
T ss_dssp CEECGGGTCSSTTCEEEEEEEEEEHHHHGGGHHHHHHHHHHHSCC------CCCCCCHHHHHHHHHHTHHHHHHTTS-SC
T ss_pred CEEeecCccCCCCCCCEEeecCCCHHHhhhHHHHHHHHHHHhCCCCCCCCCCcccCCHHHHHHHHhccchhhhhccc-cc
Confidence 345665 1 121 7788999999875 1 1111 1 234445 56
Q ss_pred hhhhhcccccccee------eeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCc
Q psy10975 106 AASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 177 (574)
Q Consensus 106 ~~d~~~~e~~G~l~------v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRgl 177 (574)
.+|++.+++.|++. ++..+..|+.. |||| +||||||||.+|+|||++.|++|||.+ |++|||||||||||
T Consensus 175 ~~dl~~~e~~g~~~~~~~~~~~~~~~~r~~~-qLGTLGgGNHFiEvq~vd~i~d~~~a~~~Gl~~-g~v~lmiHSGSRgl 252 (487)
T 2epg_A 175 PEDVRFIESQGRLPWANPDKVSERAFERGAP-QIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 252 (487)
T ss_dssp GGGGGGBGGGGCCTTCCGGGSCHHHHHHHGG-GTTCCCSSSCEEEEEEEEEESCHHHHHHHTCCT-TEEEEEEEECCHHH
T ss_pred hhhHHHHHhcccccccChhhhcHHHHhhhhh-hcCCCCCCCcEEEEEEeeEeccHhHHHhcCCCC-CcEEEEEecCCchh
Confidence 67888888877763 44556677787 9999 999999999999999999999999976 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCCCCCc
Q psy10975 178 GHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPDDLDM 251 (574)
Q Consensus 178 G~~Ia~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~~~~~ 251 (574)
||+||++|++.|.++++++++.+|+++|+|+|++|++|++||.+ +|||| ||++|+ +++++|.++ +.++.++++
T Consensus 253 G~qIa~~~~~~a~~~~~~~~i~~pd~~La~l~~~s~eg~~Yl~am~~A~nyA~~NR~~i~~~v~~~~~~~-~~~~~~~~~ 331 (487)
T 2epg_A 253 GHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEKV-GFTPRDHGL 331 (487)
T ss_dssp HHHHHHHHHHHHHTTHHHHTCCCSSGGGCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccceeEeCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc-CCCcccCCc
Confidence 99999999999999999999999999999999999999999999 89999 999999 999999887 653333457
Q ss_pred eeEEEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccc--ccc
Q psy10975 252 HVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQ--ETF 329 (574)
Q Consensus 252 ~li~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~--~s~ 329 (574)
.++|||+|||+|+|.| +| +++|||||||||||||+||++|..|+..||||||||||||+||||+| ++|+ +||
T Consensus 332 ~~~~dv~HN~a~~E~h--~~--~~~~VhRKGAtrA~~~g~~~~p~~y~~~Gq~viIPGSMgt~SyIv~G--~g~~~~~s~ 405 (487)
T 2epg_A 332 RVLYDLAHNNAKFEEH--RG--RRVLVHRKGATRAFGPGHPEVPEEYRRVGQPVLVPGDMGRYSYVLAG--TEKAMEVSF 405 (487)
T ss_dssp EEEEEEESEEEEEEEE--TT--EEEEEEEESCEECCCTTCTTSCTTTTTTCCEEEECCSTTSCEEEEEC--CHHHHHHSS
T ss_pred ceEEEeecCccccccc--CC--ceEEEEccccccCCCCCCccccchhhcCCCeEEecCCCCCceEEEEc--CCCchhhhh
Confidence 8899999999999998 45 68999999999999999999999999999999999999999999999 5564 899
Q ss_pred ccCcCCchhhhhHHHHHhhCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEE
Q psy10975 330 GSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVI 409 (574)
Q Consensus 330 ~Sa~HGAGR~~SR~~Ak~~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~i 409 (574)
+||||||||+|||++||++++.++++++|+.+||.++|.++++++||||+|||||++||++++++||+++|++||||+||
T Consensus 406 ~Sa~HGAGR~mSR~~Ak~~~~~~~~~~~l~~~Gi~v~~~~~~~~~dEaP~AYKdId~Vv~~~~~~gLv~vVa~L~Pv~~i 485 (487)
T 2epg_A 406 GSSCHGAGRKMSRHQAKKVARERNLVKELAERGILVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVV 485 (487)
T ss_dssp SEECCCSCC--------------CTTTTTTTTTCEEECC---------------CCHHHHHHHHHTSCEEEEEEEEEEEE
T ss_pred CCCCCccccHHHHHHHHhhcCHHHHHHHHHhCCEEEEECCCCcCcccChhccCCHHHHHHhhhhCCCEEEEEEEEEEEEE
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred ec
Q psy10975 410 KG 411 (574)
Q Consensus 410 Kg 411 (574)
||
T Consensus 486 KG 487 (487)
T 2epg_A 486 KG 487 (487)
T ss_dssp EC
T ss_pred cC
Confidence 97
No 3
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus}
Probab=99.82 E-value=3e-21 Score=209.57 Aligned_cols=117 Identities=31% Similarity=0.500 Sum_probs=103.5
Q ss_pred ecccCChHH-HHHh--cCcccc-------ccCCChhhhhHHHHHHHHHHHhcCCCCCCCCC-cccCCHHHHHHHHHhhhH
Q psy10975 437 PMNARDLEE-ALEM--GMDWSL-------REGYIWAEDKEHFERLAQSMFDHIPVGVGSKG-IIPMNARDLEEALEMGMD 505 (574)
Q Consensus 437 ~~~~~~~~~-~~~~--g~~~~l-------~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g-~~~l~~~~l~~vl~~Ga~ 505 (574)
.|.|+|.++ ++++ +|++|+ +|+|+.+|+++++++|+++||++||+|+|+++ .++++.++++++|..|++
T Consensus 86 ~V~a~~~~~~g~I~P~~VG~DIgCGm~l~~T~L~~~d~~~~l~~L~~~l~~~iP~G~g~~~~~~~~~~~~~~~~~~~g~~ 165 (487)
T 2epg_A 86 GVAAFDPEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAG 165 (487)
T ss_dssp EEEEECGGGTCEECGGGTCSSTTCEEEEEEEEEEHHHHGGGHHHHHHHHHHHSCC------CCCCCCHHHHHHHHHHTHH
T ss_pred eEEEeccCCCCEEeecCccCCCCCCCEEeecCCCHHHhhhHHHHHHHHHHHhCCCCCCCCCCcccCCHHHHHHHHhccch
Confidence 467788877 5666 888885 89999999999999999999999999999999 899999999999999999
Q ss_pred hHHHhCCCchhhhhhhhhcCcCCCCCcchhhHHHHhcCCCCCCCCCCC
Q psy10975 506 WSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553 (574)
Q Consensus 506 Wav~~Gyg~~~Dl~~~Ee~G~~~~Adp~~VS~~A~~Rg~~QlG~~~~~ 553 (574)
|++++||||.+|+++|||+|||.+|||++||++|++|+.+|||++.|.
T Consensus 166 w~~~~g~~~~~dl~~~e~~g~~~~~~~~~~~~~~~~r~~~qLGTLGgG 213 (487)
T 2epg_A 166 WLVKRGYGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGTLGSG 213 (487)
T ss_dssp HHHHTTSSCGGGGGGBGGGGCCTTCCGGGSCHHHHHHHGGGTTCCCSS
T ss_pred hhhhccccchhhHHHHHhcccccccChhhhcHHHHhhhhhhcCCCCCC
Confidence 999999999999999999999999999999999999999999998653
No 4
>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A*
Probab=99.81 E-value=5.8e-21 Score=207.76 Aligned_cols=116 Identities=34% Similarity=0.627 Sum_probs=106.9
Q ss_pred cccCChHHHHHh--cCcccc-------ccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhHH
Q psy10975 438 MNARDLEEALEM--GMDWSL-------REGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSL 508 (574)
Q Consensus 438 ~~~~~~~~~~~~--g~~~~l-------~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wav 508 (574)
|.+.|..+++++ +||+|| +|+|+.+|+++++++|+++||++||+|+|++++++++.++|+++|..|++|+|
T Consensus 77 V~a~~~~~g~I~P~~VG~DIgCGm~l~~t~l~~~dl~~~l~~l~~~i~~~iP~G~g~~~~~~~~~~~~~~~l~~g~~w~~ 156 (487)
T 4dwr_B 77 VAAFDVKEGVISPGGIGYDINCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAV 156 (487)
T ss_dssp EEEEETTTCEECGGGTCSSTTCEEEEECCSCBHHHHGGGHHHHHHHHHHHSCCSSSTTCCCCCCGGGCHHHHHHTHHHHH
T ss_pred EEEecCcCCEEecCCceecccCeeEEEecCCCHHHHhHHHHHHHHHHHhhCCCCcCccCccccchhhhhHHHhhhHHHHH
Confidence 444455556665 777776 89999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCchhhhhhhhhcCcCCCCCcchhhHHHHhcCCCCCCCCCCC
Q psy10975 509 REGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGT 553 (574)
Q Consensus 509 ~~Gyg~~~Dl~~~Ee~G~~~~Adp~~VS~~A~~Rg~~QlG~~~~~ 553 (574)
++||||++||++|||+|+|+++||++||++|++|+.+|||++.|.
T Consensus 157 ~~g~~~~~dl~~~ee~g~~~~~d~~~v~~~~~~r~~~qLGTLGgG 201 (487)
T 4dwr_B 157 DNGYGWERDLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSG 201 (487)
T ss_dssp HTTSSCGGGGGGSGGGGCCTTCCGGGSCHHHHHHHGGGTTCCCSS
T ss_pred hcccchHhHHHHHHhcCCcccCChHHHhHHHHhhhhhhccCCCCC
Confidence 999999999999999999999999999999999999999999653
No 5
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=40.41 E-value=58 Score=30.76 Aligned_cols=137 Identities=8% Similarity=0.106 Sum_probs=74.3
Q ss_pred CHHHHHHHHHhCCeEEEEcCCccccccccccc-c--ChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhhhccc
Q psy10975 350 DYQEVLNKLESQGISIRVASPKLVMEEAPESY-K--NVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHI 426 (574)
Q Consensus 350 ~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AY-K--dI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~~~~~ 426 (574)
+..++.+.| +.++.+.|.- ....|++- . .+.++++.+.+.|..-+-. . +...-+++.+. . .+
T Consensus 6 ~~~~~~~~~-~~~~~~~~~~----~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~--~------~~~~i~~i~~~-~-~~ 70 (234)
T 1yxy_A 6 TKEKLMEQL-KGGIIVSCQA----LPGEPLYSETGGIMPLMAKAAQEAGAVGIRA--N------SVRDIKEIQAI-T-DL 70 (234)
T ss_dssp CHHHHHHHH-TTSCEEECCC----CTTSTTCCTTCCSHHHHHHHHHHHTCSEEEE--E------SHHHHHHHHTT-C-CS
T ss_pred hHHHHHHHH-hCCEEEEeeC----CCCCCCcCCccchHHHHHHHHHHCCCcEeec--C------CHHHHHHHHHh-C-CC
Confidence 345667778 5678888743 34456664 4 6778888888888644321 1 34443444333 3 58
Q ss_pred cc-ccCccce----Eec--ccCChHHHHHhcCccccc-cCCC--h--hhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHH
Q psy10975 427 PV-GVGSKGI----IPM--NARDLEEALEMGMDWSLR-EGYI--W--AEDKEHFERLAQSMFDHIPVGVGSKGIIPMNAR 494 (574)
Q Consensus 427 ~~-~~~~~~~----~~~--~~~~~~~~~~~g~~~~l~-T~L~--~--~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~ 494 (574)
|+ |+-+++| +.+ ..+.+++++..|+|+=.. +... . +.+...++++ .++|..+|.+++.. +..
T Consensus 71 p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i-~~~~~~~~v~~~~~-----t~~ 144 (234)
T 1yxy_A 71 PIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQV-KEKYPNQLLMADIS-----TFD 144 (234)
T ss_dssp CEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHH-HHHCTTCEEEEECS-----SHH
T ss_pred CEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHH-HHhCCCCeEEEeCC-----CHH
Confidence 87 5544332 222 234566888889986532 1111 1 1222233222 22333445444322 566
Q ss_pred HHHHHHHhhhHhH
Q psy10975 495 DLEEALEMGMDWS 507 (574)
Q Consensus 495 ~l~~vl~~Ga~Wa 507 (574)
+....+..|++|-
T Consensus 145 ea~~a~~~Gad~i 157 (234)
T 1yxy_A 145 EGLVAHQAGIDFV 157 (234)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 7777888999887
No 6
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=38.90 E-value=58 Score=31.53 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=72.6
Q ss_pred HHHHHHHH-hCCeEEEEcCCccccccccc-cccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhhhcccccc
Q psy10975 352 QEVLNKLE-SQGISIRVASPKLVMEEAPE-SYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVG 429 (574)
Q Consensus 352 ~~~~~~L~-~~gi~~~~~~~~~l~eEAP~-AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~~~~~~~~ 429 (574)
..+.+.|+ +.|+.+.|.- ++..|. ..-++.++....++.|..-+.. -+...-+++ +... .+|+
T Consensus 8 ~~~~~~~~~~~~livscq~----~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~--------~~~~~i~~i-r~~v-~~Pv- 72 (232)
T 3igs_A 8 EQLDKNIAASGGLIVSCQP----VPGSPLDKPEIVAAMALAAEQAGAVAVRI--------EGIDNLRMT-RSLV-SVPI- 72 (232)
T ss_dssp HHHHHHHHHHCCEEEECCC----CTTCTTCSHHHHHHHHHHHHHTTCSEEEE--------ESHHHHHHH-HTTC-CSCE-
T ss_pred HHHHHHhhhcCCEEEEEeC----CCCCCCCCcchHHHHHHHHHHCCCeEEEE--------CCHHHHHHH-HHhc-CCCE-
Confidence 45556662 3578888842 222221 2236778888888888664332 111111222 2333 4886
Q ss_pred cC--ccc------eEecccCChHHHHHhcCccccc--cCC-ChhhhhHHHHHHHHHHHh-cCCCCCCCCCcccCCHHHHH
Q psy10975 430 VG--SKG------IIPMNARDLEEALEMGMDWSLR--EGY-IWAEDKEHFERLAQSMFD-HIPVGVGSKGIIPMNARDLE 497 (574)
Q Consensus 430 ~~--~~~------~~~~~~~~~~~~~~~g~~~~l~--T~L-~~~dv~~~~~~L~d~Lf~-~iP~GvG~~g~~~l~~~~l~ 497 (574)
+| ++. ||.-...+++++++.|+|.-+. |.+ +.+.++ ++++.+-+ .++.++... +.++..
T Consensus 73 ig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~----~~i~~~~~~g~~v~~~v~-----t~eea~ 143 (232)
T 3igs_A 73 IGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVE----ALLARIHHHHLLTMADCS-----SVDDGL 143 (232)
T ss_dssp EEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHH----HHHHHHHHTTCEEEEECC-----SHHHHH
T ss_pred EEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHH----HHHHHHHHCCCEEEEeCC-----CHHHHH
Confidence 54 653 3322223678889999998652 221 223333 33333332 455555332 677888
Q ss_pred HHHHhhhHhHH
Q psy10975 498 EALEMGMDWSL 508 (574)
Q Consensus 498 ~vl~~Ga~Wav 508 (574)
.++..|+++-.
T Consensus 144 ~a~~~Gad~Ig 154 (232)
T 3igs_A 144 ACQRLGADIIG 154 (232)
T ss_dssp HHHHTTCSEEE
T ss_pred HHHhCCCCEEE
Confidence 88999998874
No 7
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=31.39 E-value=42 Score=32.91 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccc---hhHHHHHhhhccccc
Q psy10975 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIY---LNERLAQSMFDHIPV 428 (574)
Q Consensus 352 ~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~---~~~~~~~~~~~~~~~ 428 (574)
+.+.+.|++.+|.-..+.. -..++.++.+.+.+.|+--+-. +++.+. .-++|++. |..+-+
T Consensus 25 ~~~~~~l~~~~vv~Vir~~---------~~~~a~~~a~al~~gGi~~iEv------t~~t~~a~e~I~~l~~~-~~~~~i 88 (232)
T 4e38_A 25 STINNQLKALKVIPVIAID---------NAEDIIPLGKVLAENGLPAAEI------TFRSDAAVEAIRLLRQA-QPEMLI 88 (232)
T ss_dssp HHHHHHHHHHCEEEEECCS---------SGGGHHHHHHHHHHTTCCEEEE------ETTSTTHHHHHHHHHHH-CTTCEE
T ss_pred HHHHHHHHhCCEEEEEEcC---------CHHHHHHHHHHHHHCCCCEEEE------eCCCCCHHHHHHHHHHh-CCCCEE
Confidence 3456677777876444321 1235677888888888654333 344555 33444443 455667
Q ss_pred ccCccceEecccCChHHHHHhcCccccccCCChhhhhHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHHHhhhHhH
Q psy10975 429 GVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS 507 (574)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~Lf~~iP~GvG~~g~~~l~~~~l~~vl~~Ga~Wa 507 (574)
|.|. + ++.++++.++..|++|-..-+++.+-++-.. + ..||.--|. .|.+|+.+.++.|+++-
T Consensus 89 GaGT---V-lt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~-----~--~gi~~ipGv-----~TptEi~~A~~~Gad~v 151 (232)
T 4e38_A 89 GAGT---I-LNGEQALAAKEAGATFVVSPGFNPNTVRACQ-----E--IGIDIVPGV-----NNPSTVEAALEMGLTTL 151 (232)
T ss_dssp EEEC---C-CSHHHHHHHHHHTCSEEECSSCCHHHHHHHH-----H--HTCEEECEE-----CSHHHHHHHHHTTCCEE
T ss_pred eECC---c-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH-----H--cCCCEEcCC-----CCHHHHHHHHHcCCCEE
Confidence 7764 3 3588899999999999988776643332211 1 367754442 28999999999999864
No 8
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=26.18 E-value=32 Score=30.04 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCc-eeEeEEEEeeEEEeccch-hHHHHHhh
Q psy10975 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGI-SKKTFKLRPVAVIKGIYL-NERLAQSM 422 (574)
Q Consensus 352 ~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl-~~~VarL~Pl~~iKg~~~-~~~~~~~~ 422 (574)
....+.|+.+|+.+...+ +-..|+||.+=..|.+-++..|. +-++--+-=-++.+|.|. .|||++.+
T Consensus 33 ~~~~~~lk~~Gi~V~RyN----L~~~P~~F~~N~~V~~~L~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~~l 101 (106)
T 3ktb_A 33 AVVIESLKKQGIIVTRHN----LRDEPQVYVSNKTVNDFLQKHGADALPITLVDGEIAVSQTYPTTKQMSEWT 101 (106)
T ss_dssp HHHHHHHHHTTCCCEEEE----TTTCTTHHHHSHHHHHHHHTTCGGGCSEEEETTEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEc----cccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEEeccCCCHHHHHHHh
Confidence 344677888899866554 77899999999999999998886 444444555566778765 57787754
No 9
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=23.25 E-value=1.8e+02 Score=27.88 Aligned_cols=135 Identities=10% Similarity=0.095 Sum_probs=74.0
Q ss_pred HHHHHHHHH-hCCeEEEEcCCccccccccc-cccChhHHHhhccccCceeEeEEEEeeEEEeccchhHHHHHhhhcccc-
Q psy10975 351 YQEVLNKLE-SQGISIRVASPKLVMEEAPE-SYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIP- 427 (574)
Q Consensus 351 ~~~~~~~L~-~~gi~~~~~~~~~l~eEAP~-AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~~~~~~~~~~~~~~- 427 (574)
...+.+.|+ +.|+.+.|.- ++..|. .--++.++....++.|-.-+-+ +..-.=+-.+... .+|
T Consensus 7 ~~~~~~~~~~~~~livscq~----~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~---------~~~~~i~~ir~~v-~~Pv 72 (229)
T 3q58_A 7 LARLEQSVHENGGLIVSCQP----VPGSPMDKPEIVAAMAQAAASAGAVAVRI---------EGIENLRTVRPHL-SVPI 72 (229)
T ss_dssp HHHHHHHHHHHCCEEEECCC----CTTSTTCSHHHHHHHHHHHHHTTCSEEEE---------ESHHHHHHHGGGC-CSCE
T ss_pred HHHHHHHhhhcCCEEEEEeC----CCCCCCCCcchHHHHHHHHHHCCCcEEEE---------CCHHHHHHHHHhc-CCCE
Confidence 345666772 3578888842 222222 2236777888888888665433 1111112223333 478
Q ss_pred cccCccc------eEecccCChHHHHHhcCccccc--cC-CChhhhhHHHHHHHHHHHh-cCCCCCCCCCcccCCHHHHH
Q psy10975 428 VGVGSKG------IIPMNARDLEEALEMGMDWSLR--EG-YIWAEDKEHFERLAQSMFD-HIPVGVGSKGIIPMNARDLE 497 (574)
Q Consensus 428 ~~~~~~~------~~~~~~~~~~~~~~~g~~~~l~--T~-L~~~dv~~~~~~L~d~Lf~-~iP~GvG~~g~~~l~~~~l~ 497 (574)
+|+=++. ||.-...+++++++.|+|.-+. |. ++.+.++ ++++.+-+ .++.++.. -+.++..
T Consensus 73 ig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~----~~i~~~~~~g~~v~~~v-----~t~eea~ 143 (229)
T 3q58_A 73 IGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDID----SLLTRIRLHGLLAMADC-----STVNEGI 143 (229)
T ss_dssp EEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHH----HHHHHHHHTTCEEEEEC-----SSHHHHH
T ss_pred EEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChHHHH----HHHHHHHHCCCEEEEec-----CCHHHHH
Confidence 4655553 3333233678889999997652 22 2223333 33333332 45555433 2678888
Q ss_pred HHHHhhhHhHH
Q psy10975 498 EALEMGMDWSL 508 (574)
Q Consensus 498 ~vl~~Ga~Wav 508 (574)
.++..|+++-.
T Consensus 144 ~a~~~Gad~Ig 154 (229)
T 3q58_A 144 SCHQKGIEFIG 154 (229)
T ss_dssp HHHHTTCSEEE
T ss_pred HHHhCCCCEEE
Confidence 88999999874
No 10
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=22.39 E-value=36 Score=29.93 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCc-eeEeEEEEeeEEEeccch-hHHHHHhh
Q psy10975 352 QEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGI-SKKTFKLRPVAVIKGIYL-NERLAQSM 422 (574)
Q Consensus 352 ~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl-~~~VarL~Pl~~iKg~~~-~~~~~~~~ 422 (574)
....+.|+.+|+.+...+ +-..|+||.+=..|.+-++..|. +-++--+-=-++.+|.|. .|||++.+
T Consensus 30 ~~~~~~lk~~Gi~V~RyN----L~~~P~aF~~N~~V~~~L~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~~l 98 (110)
T 3kgk_A 30 STDVQWLKQSGVQIERFN----LAQQPMSFVQNEKVKAFIEASGAEGLPLLLLDGETVMAGRYPKRAELARWF 98 (110)
T ss_dssp HHHHHHHHHHTCCEEEEE----TTTCTTHHHHSHHHHHHHHHHCGGGCCEEEETTEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEc----cccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEEeccCCCHHHHHHHh
Confidence 344567888899877654 77899999999999999988774 344444445566778865 57888765
No 11
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=22.05 E-value=57 Score=27.44 Aligned_cols=34 Identities=6% Similarity=0.249 Sum_probs=23.2
Q ss_pred cccccCcCCchhhhhHHHH--HhhCCHHHHHHHHHh
Q psy10975 327 ETFGSTCHGAGRALSRAKS--RRNLDYQEVLNKLES 360 (574)
Q Consensus 327 ~s~~Sa~HGAGR~~SR~~A--k~~~~~~~~~~~L~~ 360 (574)
...|+.||+++++.+|... +++-..+.+.+.|..
T Consensus 35 ~~kC~~CHs~d~v~~~~~~~~~~~e~w~~iv~~M~~ 70 (92)
T 3a9f_A 35 DVRCNKCHTLDSVADLFRTKYKKTGQVNLIVKRMQG 70 (92)
T ss_dssp HHHSSSSSCSGGGHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HhHHHHhcCCcccccccccccccHHHHHHHHHHHHh
Confidence 4779999999999998532 233335556666754
No 12
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=21.83 E-value=1.8e+02 Score=30.18 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=56.9
Q ss_pred hCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccc--------------
Q psy10975 348 NLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIY-------------- 413 (574)
Q Consensus 348 ~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~-------------- 413 (574)
.++...-..+|.+..|.|.|...+.++ ||..-+|.|+..|. |++.|+..+
T Consensus 166 t~DISADL~eLarTpV~VVcAG~KSIL--------Di~~TLE~LET~GV--------pVvgy~td~fPaFy~r~Sg~~~~ 229 (335)
T 4gim_A 166 TFDISADLQELANTNVTVVCAGAASIL--------DLGLTTEYLETFGV--------PLIGYQTKALPAFFCRTSPFDVS 229 (335)
T ss_dssp HCCBCHHHHHHHHSCCEEEECBCCTTB--------CHHHHHHHHHHTTC--------CEEEETCSBCCBTTBSCCSSBCS
T ss_pred CccccchHHHhccCCeEEEeecchhhc--------cchhHHHHHHhcCc--------eEEEecCCCCceeeccCCCCcCc
Confidence 333333346778889999998766555 89999999998884 667776544
Q ss_pred ----hhHHHHHhhhcccccccCccceEecccC
Q psy10975 414 ----LNERLAQSMFDHIPVGVGSKGIIPMNAR 441 (574)
Q Consensus 414 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (574)
-.++.|+++..+-..|+.+ |.+.+|.-
T Consensus 230 ~rvd~~~e~A~i~~~~~~lgl~~-g~lvanPI 260 (335)
T 4gim_A 230 IRLDSASEIARAMVVKWQSGLNG-GLVVANPI 260 (335)
T ss_dssp EEECCHHHHHHHHHHHHHTTCCS-CEEEECCC
T ss_pred ceeCCHHHHHHHHHHHHHcCCCC-ceEEeCCC
Confidence 3689999999999988864 77776653
No 13
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.56 E-value=76 Score=27.85 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=39.5
Q ss_pred ccchhHHHHH-hhhcccccccCccceEecccCChH---HHHHhcCccccccCCChhhhhHHHHHHHHH
Q psy10975 411 GIYLNERLAQ-SMFDHIPVGVGSKGIIPMNARDLE---EALEMGMDWSLREGYIWAEDKEHFERLAQS 474 (574)
Q Consensus 411 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~l~T~L~~~dv~~~~~~L~d~ 474 (574)
|-.+-+++-+ .-+.+||+ ++.++..+.+ +++..|++--|.-+.+.+++...++.+.++
T Consensus 72 G~el~~~ir~~~~~~~ipv------I~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 72 GIDLLKNIRADEELKHLPV------LMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp HHHHHHHHHHSTTTTTCCE------EEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhCCCCCCCeE------EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 4455555532 35678986 4555555555 677779998888899999998888766543
Done!