Your job contains 1 sequence.
>psy10975
MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH
SVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCV
MIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ
VATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAK
QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQL
TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES
QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQ
SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIP
VGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAK
KRGLPQVSDRRGTGSSKYCHGVGSIPARLECRPE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10975
(574 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032781 - symbol:CG9987 species:7227 "Drosophila m... 1185 7.5e-148 2
ZFIN|ZDB-GENE-040426-2096 - symbol:zgc:76871 "zgc:76871" ... 1127 8.2e-138 2
UNIPROTKB|F1NYI3 - symbol:C1H22orf28 "Uncharacterized pro... 1115 4.5e-137 2
UNIPROTKB|Q5E9T9 - symbol:Q5E9T9 "tRNA-splicing ligase Rt... 1108 9.4e-137 2
UNIPROTKB|Q9Y3I0 - symbol:C22orf28 "tRNA-splicing ligase ... 1108 1.2e-136 2
UNIPROTKB|F2Z5V0 - symbol:C22orf28 "Uncharacterized prote... 1108 1.2e-136 2
UNIPROTKB|Q19PY3 - symbol:Q19PY3 "tRNA-splicing ligase Rt... 1108 1.2e-136 2
UNIPROTKB|A9CB42 - symbol:A9CB42 "tRNA-splicing ligase Rt... 1108 1.2e-136 2
UNIPROTKB|Q4R6X4 - symbol:QtsA-16939 "tRNA-splicing ligas... 1108 1.2e-136 2
UNIPROTKB|Q561P3 - symbol:Q561P3 "tRNA-splicing ligase Rt... 1119 1.9e-136 2
MGI|MGI:106379 - symbol:D10Wsu52e "DNA segment, Chr 10, W... 1106 1.9e-136 2
RGD|1303261 - symbol:LOC362855 "P55" species:10116 "Rattu... 1106 1.9e-136 2
WB|WBGene00008877 - symbol:F16A11.2 species:6239 "Caenorh... 1014 4.0e-123 2
DICTYBASE|DDB_G0278481 - symbol:iliN "UPF0027 family prot... 1036 2.2e-122 2
GENEDB_PFALCIPARUM|PF11_0068 - symbol:PF11_0068 "hypothet... 992 1.8e-112 2
UNIPROTKB|Q8IIU6 - symbol:PF11_0068 "tRNA-splicing ligase... 992 1.8e-112 2
UNIPROTKB|Q3Z899 - symbol:DET0823 "Putative uncharacteriz... 664 4.1e-73 2
TIGR_CMR|DET_0823 - symbol:DET_0823 "conserved hypothetic... 664 4.1e-73 2
UNIPROTKB|Q8TUS2 - symbol:rtcB "tRNA-splicing ligase RtcB... 652 2.5e-70 2
UNIPROTKB|Q8ZY09 - symbol:rtcB "tRNA-splicing ligase RtcB... 634 4.8e-66 2
UNIPROTKB|P71930 - symbol:rtcB "RNA-splicing ligase RtcB"... 599 2.9e-64 2
UNIPROTKB|Q74CI9 - symbol:GSU1684 "Uncharacterized protei... 570 9.9e-60 2
TIGR_CMR|GSU_1684 - symbol:GSU_1684 "conserved hypothetic... 570 9.9e-60 2
UNIPROTKB|Q60CB4 - symbol:MCA0195 "Putative uncharacteriz... 558 9.9e-60 2
UNIPROTKB|Q3AFN5 - symbol:CHY_0177 "Putative uncharacteri... 421 1.1e-44 2
TIGR_CMR|CHY_0177 - symbol:CHY_0177 "conserved hypothetic... 421 1.1e-44 2
GENEDB_PFALCIPARUM|PFL1060c - symbol:PFL1060c "hypothetic... 195 1.0e-15 4
UNIPROTKB|Q8I5J3 - symbol:PFL1060c "Conserved protein" sp... 195 1.0e-15 4
UNIPROTKB|P46850 - symbol:rtcB "RNA ligase" species:83333... 170 8.7e-15 3
UNIPROTKB|Q724F9 - symbol:LMOf2365_0265 "Putative unchara... 123 0.00019 1
UNIPROTKB|Q81P21 - symbol:BAS2787 "Uncharacterized protei... 86 0.00043 2
TIGR_CMR|BA_2999 - symbol:BA_2999 "conserved hypothetical... 86 0.00043 2
>FB|FBgn0032781 [details] [associations]
symbol:CG9987 species:7227 "Drosophila melanogaster"
[GO:0022008 "neurogenesis" evidence=IMP] GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0046872 GO:GO:0008033
GO:GO:0003972 eggNOG:COG1690 GeneTree:ENSGT00390000015260 KO:K14415
OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118
Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AY119213
RefSeq:NP_609965.1 UniGene:Dm.13521 ProteinModelPortal:Q9VIW7
SMR:Q9VIW7 IntAct:Q9VIW7 MINT:MINT-832367 STRING:Q9VIW7
PaxDb:Q9VIW7 PRIDE:Q9VIW7 EnsemblMetazoa:FBtr0081205 GeneID:35220
KEGG:dme:Dmel_CG9987 UCSC:CG9987-RA FlyBase:FBgn0032781
InParanoid:Q9VIW7 OrthoDB:EOG4G79DG PhylomeDB:Q9VIW7
GenomeRNAi:35220 NextBio:792444 Bgee:Q9VIW7 Uniprot:Q9VIW7
Length = 506
Score = 1185 (422.2 bits), Expect = 7.5e-148, Sum P(2) = 7.5e-148
Identities = 240/321 (74%), Positives = 264/321 (82%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + + RG Q+ T AGNHYAEIQ+VDEIYDKW+AS
Sbjct: 187 WAEDKEHCEEYGRMLNADPAKVSMRAKKRGLP-QLGTLGAGNHYAEIQVVDEIYDKWSAS 245
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN- 215
KMGIE+ GQV VMIHSGSRGFGHQVATDALVQMEKAMKRD IETNDRQLACARINS +
Sbjct: 246 KMGIEEKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQ 305
Query: 216 ---KAFAKQFNTT-PDDLDMHVIY-DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
KA A N + M + AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVD
Sbjct: 306 DYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVD 365
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++ LLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFG
Sbjct: 366 GKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFG 425
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
STCHGAGRALSRAKSRRNLDY++VL+KL+ GI+IRVASPKLVMEEAPESYK+VTDVVDT
Sbjct: 426 STCHGAGRALSRAKSRRNLDYKDVLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDT 485
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CHA GISKK K+RP+AVIKG
Sbjct: 486 CHAAGISKKCIKMRPIAVIKG 506
Score = 406 (148.0 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 76/87 (87%), Positives = 82/87 (94%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML
Sbjct: 142 EQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRML 201
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
NADP+KVSMRAKKRGLPQ+ G G+
Sbjct: 202 NADPAKVSMRAKKRGLPQLGTL-GAGN 227
Score = 280 (103.6 bits), Expect = 7.5e-148, Sum P(2) = 7.5e-148
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG F+VN LE+LMLEEL+NSCRPG VGGFLPGVKQIANVAALPGIVGRS+GLPD+H
Sbjct: 31 MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90
Query: 61 S 61
S
Sbjct: 91 S 91
Score = 276 (102.2 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 53/73 (72%), Positives = 60/73 (82%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEH E +
Sbjct: 140 VKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGR 199
Query: 474 SMFDHIPVGVGSK 486
M + P V +
Sbjct: 200 -MLNADPAKVSMR 211
Score = 247 (92.0 bits), Expect = 3.3e-43, Sum P(2) = 3.3e-43
Identities = 46/51 (90%), Positives = 49/51 (96%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGHQVAT
Sbjct: 222 TLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGHQVAT 272
>ZFIN|ZDB-GENE-040426-2096 [details] [associations]
symbol:zgc:76871 "zgc:76871" species:7955 "Danio
rerio" [GO:0003972 "RNA ligase (ATP) activity" evidence=IEA;ISS]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISS] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] ZFIN:ZDB-GENE-040426-2096 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0072669 GO:GO:0006388
GO:GO:0003972 eggNOG:COG1690 GeneTree:ENSGT00390000015260
HOVERGEN:HBG081383 KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7
HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AL845512 EMBL:BC065987
IPI:IPI00770937 RefSeq:NP_998268.1 UniGene:Dr.89610
ProteinModelPortal:Q6NZS4 STRING:Q6NZS4 PRIDE:Q6NZS4
Ensembl:ENSDART00000111348 GeneID:406376 KEGG:dre:406376
InParanoid:Q6NZS4 NextBio:20817987 ArrayExpress:Q6NZS4 Bgee:Q6NZS4
Uniprot:Q6NZS4
Length = 505
Score = 1127 (401.8 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 228/321 (71%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEIY+ +AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSSKAKKRGLP-QLGTLGAGNHYAEIQVVDEIYNDYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDRITVNDRQLACARITSEEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AF+K F+TTPDDLDMHVIYDVSHNIAK EEHMVD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
G+QKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 373 (136.4 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 69/87 (79%), Positives = 78/87 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS +AKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSSKAKKRGLPQLGTL-GAGN 226
Score = 262 (97.3 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQS+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPNKVSSK 210
Score = 243 (90.6 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 48/61 (78%), Positives = 52/61 (85%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G GGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MLVEGVFYVNDPLEKLMFEELRNACRGGGFGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 224 (83.9 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 42/51 (82%), Positives = 46/51 (90%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
>UNIPROTKB|F1NYI3 [details] [associations]
symbol:C1H22orf28 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0003972 "RNA ligase (ATP) activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA] [GO:0017166
"vinculin binding" evidence=IEA] [GO:0072669 "tRNA-splicing ligase
complex" evidence=IEA] GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
GeneTree:ENSGT00390000015260 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AADN02006278 IPI:IPI00571823 Ensembl:ENSGALT00000020590
Uniprot:F1NYI3
Length = 507
Score = 1115 (397.6 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 226/321 (70%), Positives = 256/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VD+IY+++AA
Sbjct: 188 WAEDKEHCEEYGRMLQADPNKVSSRAKKRGLP-QLGTLGAGNHYAEIQVVDDIYNEYAAR 246
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 247 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASVEGQ 306
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VD
Sbjct: 307 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVD 366
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 367 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 426
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 427 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 486
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CHA GISKK KLRP+AVIKG
Sbjct: 487 CHAAGISKKAIKLRPIAVIKG 507
Score = 382 (139.5 bits), Expect = 2.8e-59, Sum P(2) = 2.8e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 143 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 202
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 203 QADPNKVSSRAKKRGLPQLGTL-GAGN 228
Score = 265 (98.3 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 141 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 200
Query: 474 SMFDHIPVGVGSK 486
M P V S+
Sbjct: 201 -MLQADPNKVSSR 212
Score = 248 (92.4 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 48/61 (78%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M+VEGVF+VND LEKLM EELRN+CR G GGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 32 MHVEGVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 91
Query: 61 S 61
S
Sbjct: 92 S 92
Score = 222 (83.2 bits), Expect = 8.5e-37, Sum P(2) = 8.5e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 223 TLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLGHQVAT 273
>UNIPROTKB|Q5E9T9 [details] [associations]
symbol:Q5E9T9 "tRNA-splicing ligase RtcB homolog"
species:9913 "Bos taurus" [GO:0001890 "placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0072669 "tRNA-splicing
ligase complex" evidence=ISS] [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017166 "vinculin binding"
evidence=IEA] GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0072669 GO:GO:0006388 GO:GO:0003972 EMBL:BT020831
EMBL:BC104498 IPI:IPI00700295 RefSeq:NP_001015631.1
UniGene:Bt.91477 ProteinModelPortal:Q5E9T9 STRING:Q5E9T9
PRIDE:Q5E9T9 Ensembl:ENSBTAT00000014699 GeneID:525106
KEGG:bta:525106 CTD:100928215 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 InParanoid:Q5E9T9
KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7 NextBio:20874099
HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 Uniprot:Q5E9T9
Length = 505
Score = 1108 (395.1 bits), Expect = 9.4e-137, Sum P(2) = 9.4e-137
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSARAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 382 (139.5 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSARAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.0e-41, Sum P(2) = 1.0e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 252 (93.8 bits), Expect = 9.4e-137, Sum P(2) = 9.4e-137
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDSLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 2.9e-37, Sum P(2) = 2.9e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDSLEKLMFEELRNACRGGG 58
>UNIPROTKB|Q9Y3I0 [details] [associations]
symbol:C22orf28 "tRNA-splicing ligase RtcB homolog"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017166 "vinculin binding" evidence=IPI] [GO:0007160
"cell-matrix adhesion" evidence=NAS] [GO:0034446 "substrate
adhesion-dependent cell spreading" evidence=NAS] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IDA]
[GO:0003972 "RNA ligase (ATP) activity" evidence=IDA] [GO:0072669
"tRNA-splicing ligase complex" evidence=IDA] GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 EMBL:CH471095 GO:GO:0007160
GO:GO:0034446 GO:GO:0072669 EMBL:AL021937 GO:GO:0006388
GO:GO:0003972 eggNOG:COG1690 HOVERGEN:HBG081383 KO:K14415
OMA:GRMLNAD OrthoDB:EOG4DFPN7 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AL050255 EMBL:AF161466 EMBL:AF155658 EMBL:CR457175
EMBL:CR456450 EMBL:AK312503 EMBL:BC000151 EMBL:BC002970
EMBL:BC010308 EMBL:BC016707 EMBL:AL137272 IPI:IPI00550689
PIR:T46344 RefSeq:NP_055121.1 UniGene:Hs.474643
ProteinModelPortal:Q9Y3I0 SMR:Q9Y3I0 IntAct:Q9Y3I0
MINT:MINT-4654730 STRING:Q9Y3I0 PhosphoSite:Q9Y3I0 DMDM:74753486
UCD-2DPAGE:Q9Y3I0 PaxDb:Q9Y3I0 PeptideAtlas:Q9Y3I0 PRIDE:Q9Y3I0
DNASU:51493 Ensembl:ENST00000216038 GeneID:51493 KEGG:hsa:51493
UCSC:uc003amm.2 CTD:51493 GeneCards:GC22M032783 HGNC:HGNC:26935
HPA:HPA001103 MIM:613901 neXtProt:NX_Q9Y3I0 PharmGKB:PA145149387
InParanoid:Q9Y3I0 PhylomeDB:Q9Y3I0 ChiTaRS:C22orf28
GenomeRNAi:51493 NextBio:55157 ArrayExpress:Q9Y3I0 Bgee:Q9Y3I0
CleanEx:HS_C22orf28 Genevestigator:Q9Y3I0
GermOnline:ENSG00000100220 Uniprot:Q9Y3I0
Length = 505
Score = 1108 (395.1 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSARAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 382 (139.5 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSARAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 251 (93.4 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDALEKLMFEELRNACRGGG 58
>UNIPROTKB|F2Z5V0 [details] [associations]
symbol:C22orf28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072669 "tRNA-splicing ligase complex" evidence=IEA]
[GO:0017166 "vinculin binding" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003972 "RNA ligase (ATP)
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
GeneTree:ENSGT00390000015260 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:CU407156 ProteinModelPortal:F2Z5V0 SMR:F2Z5V0 PRIDE:F2Z5V0
Ensembl:ENSSSCT00000000167 ArrayExpress:F2Z5V0 Uniprot:F2Z5V0
Length = 505
Score = 1108 (395.1 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSARAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 382 (139.5 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSARAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 251 (93.4 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDALEKLMFEELRNACRGGG 58
>UNIPROTKB|Q19PY3 [details] [associations]
symbol:Q19PY3 "tRNA-splicing ligase RtcB homolog"
species:9823 "Sus scrofa" [GO:0072669 "tRNA-splicing ligase
complex" evidence=ISS] [GO:0003972 "RNA ligase (ATP) activity"
evidence=ISS] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
eggNOG:COG1690 HOVERGEN:HBG081383 KO:K14415 HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:DQ508262 EMBL:DQ508263 RefSeq:NP_001116458.1
UniGene:Ssc.79842 STRING:Q19PY3 GeneID:733658 KEGG:ssc:733658
Uniprot:Q19PY3
Length = 505
Score = 1108 (395.1 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSARAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 382 (139.5 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSARAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 251 (93.4 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDALEKLMFEELRNACRGGG 58
>UNIPROTKB|A9CB42 [details] [associations]
symbol:A9CB42 "tRNA-splicing ligase RtcB homolog"
species:9555 "Papio anubis" [GO:0003972 "RNA ligase (ATP) activity"
evidence=ISS] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] [GO:0072669 "tRNA-splicing
ligase complex" evidence=ISS] GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
HOVERGEN:HBG081383 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
CTD:51493 EMBL:DP000487 RefSeq:NP_001162246.1 UniGene:Pan.3492
ProteinModelPortal:A9CB42 PRIDE:A9CB42 GeneID:100137237
Uniprot:A9CB42
Length = 505
Score = 1108 (395.1 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSARAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 382 (139.5 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSARAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 251 (93.4 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDALEKLMFEELRNACRGGG 58
>UNIPROTKB|Q4R6X4 [details] [associations]
symbol:QtsA-16939 "tRNA-splicing ligase RtcB homolog"
species:9541 "Macaca fascicularis" [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0072669 GO:GO:0006388
GO:GO:0003972 HOVERGEN:HBG081383 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AB169056 ProteinModelPortal:Q4R6X4 PRIDE:Q4R6X4 Uniprot:Q4R6X4
Length = 505
Score = 1108 (395.1 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSARAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 382 (139.5 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSARAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 251 (93.4 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDALEKLMFEELRNACRGGG 58
>UNIPROTKB|Q561P3 [details] [associations]
symbol:Q561P3 "tRNA-splicing ligase RtcB homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003972 "RNA
ligase (ATP) activity" evidence=ISS] [GO:0006388 "tRNA splicing,
via endonucleolytic cleavage and ligation" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0072669
GO:GO:0006388 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 KO:K14415
OrthoDB:EOG4DFPN7 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
CTD:51493 EMBL:BC093459 RefSeq:NP_001025674.1 UniGene:Str.24196
ProteinModelPortal:Q561P3 STRING:Q561P3 PRIDE:Q561P3
Ensembl:ENSXETT00000025212 GeneID:595066 KEGG:xtr:595066
Xenbase:XB-GENE-974751 InParanoid:Q561P3 OMA:MAIEEKG Bgee:Q561P3
Uniprot:Q561P3
Length = 505
Score = 1119 (399.0 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 224/321 (69%), Positives = 257/321 (80%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAE+Q+VD+IYD++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPSKVSSKAKKRGLP-QLGTLGAGNHYAEVQVVDDIYDEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI+S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARISSAEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK+KTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETFG
Sbjct: 365 GKEKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADLGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 376 (137.4 bits), Expect = 1.7e-57, Sum P(2) = 1.7e-57
Identities = 70/87 (80%), Positives = 78/87 (89%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADPSKVS +AKKRGLPQ+ G G+
Sbjct: 201 QADPSKVSSKAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 3.0e-40, Sum P(2) = 3.0e-40
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SMFDHIPVGVGSK 486
M P V SK
Sbjct: 199 -MLQADPSKVSSK 210
Score = 238 (88.8 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+ R G GGFLP +KQI NVAALPGI+ RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDPLEKLMFEELRNASRGGAAGGFLPAMKQIGNVAALPGIIHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 228 (85.3 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
Identities = 47/70 (67%), Positives = 55/70 (78%)
Query: 69 SDNTMRSSNIWKRS-PL--TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 125
+D + SS KR P TLGAGNHYAE+Q+VD+IYD++AA KMGI+ GQVCVMIHSG
Sbjct: 202 ADPSKVSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSG 261
Query: 126 SRGFGHQVAT 135
SRG GHQVAT
Sbjct: 262 SRGLGHQVAT 271
>MGI|MGI:106379 [details] [associations]
symbol:D10Wsu52e "DNA segment, Chr 10, Wayne State University
52, expressed" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0001890 "placenta development" evidence=IMP]
[GO:0003972 "RNA ligase (ATP) activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISO] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0017166 "vinculin
binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO] MGI:MGI:106379 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0001701 GO:GO:0001890 GO:GO:0072669
GO:GO:0006388 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 KO:K14415
OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118
Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AY424364
EMBL:AK145891 EMBL:AK145916 EMBL:AK149885 EMBL:AK150376
EMBL:AK150470 EMBL:AK151042 EMBL:AK151182 EMBL:AK151932
EMBL:AK152144 EMBL:AK153434 EMBL:AK168038 EMBL:AK172175
EMBL:BC003288 IPI:IPI00116850 RefSeq:NP_663397.1 UniGene:Mm.9257
ProteinModelPortal:Q99LF4 SMR:Q99LF4 IntAct:Q99LF4 STRING:Q99LF4
PhosphoSite:Q99LF4 PaxDb:Q99LF4 PRIDE:Q99LF4 DNASU:28088
Ensembl:ENSMUST00000001834 GeneID:28088 KEGG:mmu:28088
UCSC:uc007gni.1 CTD:28088 InParanoid:Q99LF4 NextBio:306634
Bgee:Q99LF4 Genevestigator:Q99LF4 GermOnline:ENSMUSG00000001783
Uniprot:Q99LF4
Length = 505
Score = 1106 (394.4 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSPRAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 381 (139.2 bits), Expect = 1.8e-59, Sum P(2) = 1.8e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSPRAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 251 (93.4 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDALEKLMFEELRNACRGGG 58
>RGD|1303261 [details] [associations]
symbol:LOC362855 "P55" species:10116 "Rattus norvegicus"
[GO:0001701 "in utero embryonic development" evidence=ISO]
[GO:0001890 "placenta development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISO;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISO;ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0017166 "vinculin
binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO;ISS] RGD:1303261 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
eggNOG:COG1690 GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383
KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7 HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:AY572415 EMBL:BC078924 IPI:IPI00209916
RefSeq:NP_997497.1 UniGene:Rn.11875 ProteinModelPortal:Q6AYT3
SMR:Q6AYT3 MINT:MINT-4576391 STRING:Q6AYT3 PhosphoSite:Q6AYT3
PRIDE:Q6AYT3 Ensembl:ENSRNOT00000006570 GeneID:362855
KEGG:rno:362855 UCSC:RGD:1303261 InParanoid:Q6AYT3 NextBio:681535
Genevestigator:Q6AYT3 GermOnline:ENSRNOG00000004813 Uniprot:Q6AYT3
Length = 505
Score = 1106 (394.4 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 224/321 (69%), Positives = 255/321 (79%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + RG Q+ T AGNHYAEIQ+VDEI++++AA
Sbjct: 186 WAEDKEHCEEYGRMLQADPNKVSPRAKKRGLP-QLGTLGAGNHYAEIQVVDEIFNEYAAK 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQVCVMIHSGSRG GHQVATDALV MEKAMKRD I NDRQLACARI S + +
Sbjct: 245 KMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQ 304
Query: 217 AFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
+ K + ++ + AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VD
Sbjct: 305 DYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
GK++TLLVHRKGSTRAFPPHHPLI VDYQLTGQPVLIGGTMGTCSYVLTGTE+GM ETFG
Sbjct: 365 GKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRRNLD+Q+VL+KL GI+IRVASPKLVMEEAPESYKNVTDVV+T
Sbjct: 425 TTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK KLRP+AVIKG
Sbjct: 485 CHDAGISKKAIKLRPIAVIKG 505
Score = 381 (139.2 bits), Expect = 1.8e-59, Sum P(2) = 1.8e-59
Identities = 71/87 (81%), Positives = 79/87 (90%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
ADP+KVS RAKKRGLPQ+ G G+
Sbjct: 201 QADPNKVSPRAKKRGLPQLGTL-GAGN 226
Score = 263 (97.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 47/62 (75%), Positives = 55/62 (88%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+LAQ+MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEH E +
Sbjct: 139 VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR 198
Query: 474 SM 475
+
Sbjct: 199 ML 200
Score = 251 (93.4 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M VEGVF+VND LEKLM EELRN+CR G VGGFLP +KQI NVAALPGIV RS+GLPDVH
Sbjct: 30 MQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 222 (83.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 41/51 (80%), Positives = 47/51 (92%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG GHQVAT
Sbjct: 221 TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVAT 271
Score = 38 (18.4 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 316 YVLTGTEKGMQETFGSTCHGAG 337
YV EK M E + C G G
Sbjct: 37 YVNDALEKLMFEELRNACRGGG 58
>WB|WBGene00008877 [details] [associations]
symbol:F16A11.2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009886 "post-embryonic morphogenesis" evidence=IMP]
GO:GO:0005524 GO:GO:0040010 GO:GO:0046872 GO:GO:0008033
GO:GO:0009886 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:Z81505 PIR:T21006 RefSeq:NP_492498.1
ProteinModelPortal:P90838 SMR:P90838 STRING:P90838 PaxDb:P90838
EnsemblMetazoa:F16A11.2 GeneID:184556 KEGG:cel:CELE_F16A11.2
UCSC:F16A11.2 CTD:184556 WormBase:F16A11.2 InParanoid:P90838
NextBio:925162 Uniprot:P90838
Length = 505
Score = 1014 (362.0 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 205/321 (63%), Positives = 241/321 (75%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
WA K E+ G++ V + + RG Q+ T AGNHYAE+Q+VDEIYDK AAS
Sbjct: 186 WAEDKEHCEEYGRMLQADASKVSLRAKKRGLP-QLGTLGAGNHYAEVQVVDEIYDKHAAS 244
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
MGI++ GQV VM+H GSRG GHQVATD+LV+MEKAM RD I ND+QLACARINS + K
Sbjct: 245 TMGIDEEGQVVVMLHCGSRGLGHQVATDSLVEMEKAMARDGIVVNDKQLACARINSVEGK 304
Query: 217 ------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
A A F + +AF K F + DD+DM VIYDVSHN+AK EEHMVD
Sbjct: 305 NYFSGMAAAANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVD 364
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
G+ + L VHRKG+TRAFP HHPLIPVDYQL GQPVLIGG+MGTCSYVLTGTE+G+ ETFG
Sbjct: 365 GRPRQLCVHRKGATRAFPAHHPLIPVDYQLIGQPVLIGGSMGTCSYVLTGTEQGLVETFG 424
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
+TCHGAGRALSRAKSRR + + V++ L+ + ISIR+ASPKL+MEEAPESYKNVTDVVDT
Sbjct: 425 TTCHGAGRALSRAKSRRTITWDSVIDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDT 484
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
C A GISKK KLRP+AVIKG
Sbjct: 485 CDAAGISKKAVKLRPIAVIKG 505
Score = 346 (126.9 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 66/87 (75%), Positives = 73/87 (83%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML
Sbjct: 141 EQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRML 200
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
AD SKVS+RAKKRGLPQ+ G G+
Sbjct: 201 QADASKVSLRAKKRGLPQLGTL-GAGN 226
Score = 233 (87.1 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---R 470
L E+L QS+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEH E R
Sbjct: 139 LKEQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGR 198
Query: 471 LAQSMFDHIPVGVGSKGI 488
+ Q+ + + +G+
Sbjct: 199 MLQADASKVSLRAKKRGL 216
Score = 217 (81.4 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG F+VN+ LE+LM +EL+ SC +GGFLP V+QIANVA+LPGIVG S+GLPD+H
Sbjct: 30 MNVEGRFYVNNSLEQLMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIH 89
Query: 61 S 61
S
Sbjct: 90 S 90
Score = 214 (80.4 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 40/51 (78%), Positives = 45/51 (88%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLGAGNHYAE+Q+VDEIYDK AAS MGI++ GQV VM+H GSRG GHQVAT
Sbjct: 221 TLGAGNHYAEVQVVDEIYDKHAASTMGIDEEGQVVVMLHCGSRGLGHQVAT 271
Score = 52 (23.4 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 378 PESYKNVTDVVDTCHAVGIS-KKTFKLRPVAVIKG-IYLNERLAQSMFDHIPVGVGSKGI 435
P +++ D +D KK F P ++G Y+N L Q MFD + +GI
Sbjct: 2 PRTFEEECDFIDRLTDTKFRIKKGFV--PNMNVEGRFYVNNSLEQLMFDELKFSCDGQGI 59
>DICTYBASE|DDB_G0278481 [details] [associations]
symbol:iliN "UPF0027 family protein" species:44689
"Dictyostelium discoideum" [GO:0003972 "RNA ligase (ATP) activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] dictyBase:DDB_G0278481 GO:GO:0005524 GO:GO:0046872
EMBL:AAFI02000023 GO:GO:0008033 GO:GO:0003972 eggNOG:COG1690
KO:K14415 OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
RefSeq:XP_642393.1 ProteinModelPortal:Q54Y09 STRING:Q54Y09
EnsemblProtists:DDB0234075 GeneID:8621598 KEGG:ddi:DDB_G0278481
ProtClustDB:CLSZ2430783 Uniprot:Q54Y09
Length = 508
Score = 1036 (369.7 bits), Expect = 2.2e-122, Sum P(2) = 2.2e-122
Identities = 209/321 (65%), Positives = 242/321 (75%)
Query: 105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
W K E+ G++ V + RG Q+ T AGNHY E+Q+VDEIYDK AA+
Sbjct: 189 WVEDKEHCEEYGRMLNADPTKVSERAKKRGLP-QLGTLGAGNHYLEVQVVDEIYDKAAAN 247
Query: 157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK 216
KMGI+ GQ+C+MIHSGSRG GHQVATD+L MEKAM RD+I ND+QLAC+RINS + +
Sbjct: 248 KMGIDRQGQICIMIHSGSRGLGHQVATDSLTLMEKAMARDHIHLNDKQLACSRINSTEGQ 307
Query: 217 ------AFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
A A F + AFAK FN+TPDDLDMHVIYDVSHNIAK EEH V+
Sbjct: 308 DYLSGMAAAANFAWVNRQSMTFLTRQAFAKAFNSTPDDLDMHVIYDVSHNIAKFEEHNVN 367
Query: 271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
G+ K LLVHRKG+TRAF PHHPLIPVDYQ TGQPVLIGGTMGTCSYVLTGTE GM ETFG
Sbjct: 368 GRPKKLLVHRKGATRAFAPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTELGMNETFG 427
Query: 331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
STCHGAGR+ SR KSR NL Y +VL+ L+++GISIRVASPKLVMEEAPESYK+V V++T
Sbjct: 428 STCHGAGRSCSRNKSRNNLSYTDVLDSLQAKGISIRVASPKLVMEEAPESYKDVVQVIET 487
Query: 391 CHAVGISKKTFKLRPVAVIKG 411
CH GISKK+ KLRP+AVIKG
Sbjct: 488 CHKAGISKKSVKLRPIAVIKG 508
Score = 351 (128.6 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 64/87 (73%), Positives = 74/87 (85%)
Query: 469 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 528
E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEHCEEYGRML
Sbjct: 144 EQLCQSLFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGRML 203
Query: 529 NADPSKVSMRAKKRGLPQVSDRRGTGS 555
NADP+KVS RAKKRGLPQ+ G G+
Sbjct: 204 NADPTKVSERAKKRGLPQLGTL-GAGN 229
Score = 230 (86.0 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQ 473
+ E+L QS+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEH E +
Sbjct: 142 IKEQLCQSLFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGR 201
Query: 474 SMFDHIPVGVGSK 486
M + P V +
Sbjct: 202 -MLNADPTKVSER 213
Score = 223 (83.6 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 46/70 (65%), Positives = 53/70 (75%)
Query: 69 SDNTMRSSNIWKRS-PL--TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 125
+D T S KR P TLGAGNHY E+Q+VDEIYDK AA+KMGI+ GQ+C+MIHSG
Sbjct: 205 ADPTKVSERAKKRGLPQLGTLGAGNHYLEVQVVDEIYDKAAANKMGIDRQGQICIMIHSG 264
Query: 126 SRGFGHQVAT 135
SRG GHQVAT
Sbjct: 265 SRGLGHQVAT 274
Score = 188 (71.2 bits), Expect = 2.2e-122, Sum P(2) = 2.2e-122
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNV+G+ +VND ++ + EEL + G V GFLP VKQIANVA+LPGIVG S+G+PD+H
Sbjct: 34 MNVDGMIYVNDSIKDYLYEELEQYSKRG-VSGFLPAVKQIANVASLPGIVGHSLGMPDIH 92
Query: 61 S 61
S
Sbjct: 93 S 93
>GENEDB_PFALCIPARUM|PF11_0068 [details] [associations]
symbol:PF11_0068 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
GO:GO:0005524 GO:GO:0046872 GO:GO:0008033 EMBL:AE014186
GO:GO:0003972 eggNOG:COG1690 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 ProtClustDB:CLSZ2430783 HOGENOM:HOG000220065
RefSeq:XP_001347744.1 ProteinModelPortal:Q8IIU6 PRIDE:Q8IIU6
EnsemblProtists:PF11_0068:mRNA GeneID:810620 KEGG:pfa:PF11_0068
EuPathDB:PlasmoDB:PF3D7_1105700 Uniprot:Q8IIU6
Length = 506
Score = 992 (354.3 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 205/328 (62%), Positives = 237/328 (72%)
Query: 98 VDEIYDKWAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEI 149
V E Y W K+ ED G+ V I + RG Q+ T AGNHYAEIQIVD+I
Sbjct: 181 VKEGYS-WIEDKLNCEDNGRSLYADSNFVSIRAKKRGIT-QMGTLGAGNHYAEIQIVDQI 238
Query: 150 YDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAR 209
YDK +A MGIE QVC+MIHSGSRG GHQ+ATDAL+ MEK+M + I D+QLAC
Sbjct: 239 YDKKSAKLMGIEKKNQVCIMIHSGSRGLGHQIATDALIDMEKSMNKYKINVIDKQLACTP 298
Query: 210 INSNKNKAFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAK 263
I+S + + + K + + ++ + AF+K FN +PDDLDMHVIYDVSHNIAK
Sbjct: 299 IHSKEGQNYLKAMGSACNFAWINRSSMTFLARQAFSKIFNQSPDDLDMHVIYDVSHNIAK 358
Query: 264 TEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK 323
EEH +DGK K LLVHRKGSTRAFPP HPL+P+DYQ GQP+LIGGTMGT SYVLTG EK
Sbjct: 359 IEEHYIDGKIKKLLVHRKGSTRAFPPFHPLVPLDYQYCGQPILIGGTMGTYSYVLTGNEK 418
Query: 324 GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKN 383
MQ TFGSTCHGAGRALSR KSR L Y +VLNKL+ Q ISIRVASPKL+MEEAPESYKN
Sbjct: 419 AMQATFGSTCHGAGRALSRNKSRNTLSYLDVLNKLKEQNISIRVASPKLIMEEAPESYKN 478
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V DVV TCH GIS K F+L+PVAVIKG
Sbjct: 479 VCDVVQTCHDAGISNKCFRLKPVAVIKG 506
Score = 246 (91.7 bits), Expect = 9.2e-28, Sum P(2) = 9.2e-28
Identities = 49/101 (48%), Positives = 68/101 (67%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W
Sbjct: 128 IRTNLFYEDIKPKQEELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
EDK +CE+ GR L AD + VS+RAKKRG+ Q+ G G+
Sbjct: 188 IEDKLNCEDNGRSLYADSNFVSIRAKKRGITQMGTL-GAGN 227
Score = 217 (81.4 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 49/88 (55%), Positives = 60/88 (68%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLGAGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG GHQ+AT A I
Sbjct: 222 TLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLGHQIATD----ALID 277
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHS 172
+ ++ +K+ K+ + D C IHS
Sbjct: 278 M-EKSMNKY---KINVIDKQLACTPIHS 301
Score = 172 (65.6 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK + E +S+
Sbjct: 142 EELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSL 201
Query: 476 F---DHIPVGVGSKGIIPM 491
+ + + + +GI M
Sbjct: 202 YADSNFVSIRAKKRGITQM 220
Score = 138 (53.6 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG +VN+ L+ L+ EE+ + FLP V QIANV+ LPGIV S+ LPDVH
Sbjct: 32 MNVEGHIYVNEKLKTLLDEEIA-TYELNKNSTFLPAVMQIANVSTLPGIVKASIALPDVH 90
Query: 61 S 61
+
Sbjct: 91 A 91
>UNIPROTKB|Q8IIU6 [details] [associations]
symbol:PF11_0068 "tRNA-splicing ligase RtcB homolog"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
GO:GO:0005524 GO:GO:0046872 GO:GO:0008033 EMBL:AE014186
GO:GO:0003972 eggNOG:COG1690 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 ProtClustDB:CLSZ2430783 HOGENOM:HOG000220065
RefSeq:XP_001347744.1 ProteinModelPortal:Q8IIU6 PRIDE:Q8IIU6
EnsemblProtists:PF11_0068:mRNA GeneID:810620 KEGG:pfa:PF11_0068
EuPathDB:PlasmoDB:PF3D7_1105700 Uniprot:Q8IIU6
Length = 506
Score = 992 (354.3 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 205/328 (62%), Positives = 237/328 (72%)
Query: 98 VDEIYDKWAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEI 149
V E Y W K+ ED G+ V I + RG Q+ T AGNHYAEIQIVD+I
Sbjct: 181 VKEGYS-WIEDKLNCEDNGRSLYADSNFVSIRAKKRGIT-QMGTLGAGNHYAEIQIVDQI 238
Query: 150 YDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAR 209
YDK +A MGIE QVC+MIHSGSRG GHQ+ATDAL+ MEK+M + I D+QLAC
Sbjct: 239 YDKKSAKLMGIEKKNQVCIMIHSGSRGLGHQIATDALIDMEKSMNKYKINVIDKQLACTP 298
Query: 210 INSNKNKAFAKQFNTTPDDLDMH------VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAK 263
I+S + + + K + + ++ + AF+K FN +PDDLDMHVIYDVSHNIAK
Sbjct: 299 IHSKEGQNYLKAMGSACNFAWINRSSMTFLARQAFSKIFNQSPDDLDMHVIYDVSHNIAK 358
Query: 264 TEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK 323
EEH +DGK K LLVHRKGSTRAFPP HPL+P+DYQ GQP+LIGGTMGT SYVLTG EK
Sbjct: 359 IEEHYIDGKIKKLLVHRKGSTRAFPPFHPLVPLDYQYCGQPILIGGTMGTYSYVLTGNEK 418
Query: 324 GMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKN 383
MQ TFGSTCHGAGRALSR KSR L Y +VLNKL+ Q ISIRVASPKL+MEEAPESYKN
Sbjct: 419 AMQATFGSTCHGAGRALSRNKSRNTLSYLDVLNKLKEQNISIRVASPKLIMEEAPESYKN 478
Query: 384 VTDVVDTCHAVGISKKTFKLRPVAVIKG 411
V DVV TCH GIS K F+L+PVAVIKG
Sbjct: 479 VCDVVQTCHDAGISNKCFRLKPVAVIKG 506
Score = 246 (91.7 bits), Expect = 9.2e-28, Sum P(2) = 9.2e-28
Identities = 49/101 (48%), Positives = 68/101 (67%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
+R + + K E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W
Sbjct: 128 IRTNLFYEDIKPKQEELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSW 187
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
EDK +CE+ GR L AD + VS+RAKKRG+ Q+ G G+
Sbjct: 188 IEDKLNCEDNGRSLYADSNFVSIRAKKRGITQMGTL-GAGN 227
Score = 217 (81.4 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 49/88 (55%), Positives = 60/88 (68%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLGAGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG GHQ+AT A I
Sbjct: 222 TLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLGHQIATD----ALID 277
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHS 172
+ ++ +K+ K+ + D C IHS
Sbjct: 278 M-EKSMNKY---KINVIDKQLACTPIHS 301
Score = 172 (65.6 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSM 475
E L Q +F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK + E +S+
Sbjct: 142 EELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSL 201
Query: 476 F---DHIPVGVGSKGIIPM 491
+ + + + +GI M
Sbjct: 202 YADSNFVSIRAKKRGITQM 220
Score = 138 (53.6 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
MNVEG +VN+ L+ L+ EE+ + FLP V QIANV+ LPGIV S+ LPDVH
Sbjct: 32 MNVEGHIYVNEKLKTLLDEEIA-TYELNKNSTFLPAVMQIANVSTLPGIVKASIALPDVH 90
Query: 61 S 61
+
Sbjct: 91 A 91
>UNIPROTKB|Q3Z899 [details] [associations]
symbol:DET0823 "Putative uncharacterized protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1690 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 OMA:MAIEEKG RefSeq:YP_181550.1
ProteinModelPortal:Q3Z899 SMR:Q3Z899 STRING:Q3Z899 PRIDE:Q3Z899
GeneID:3229904 KEGG:det:DET0823 PATRIC:21608705
ProtClustDB:CLSK837290 BioCyc:DETH243164:GJNF-824-MONOMER
Uniprot:Q3Z899
Length = 486
Score = 664 (238.8 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 137/294 (46%), Positives = 183/294 (62%)
Query: 126 SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
+RG Q+ T +GNH+ E+Q+V EI+D AS G+++ GQV +IH+GSRG GHQV T
Sbjct: 194 TRG-SSQLGTLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIHTGSRGLGHQVCT 252
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDA 237
D + + + +++ I DRQLACA + S + A A + DA
Sbjct: 253 DYVQLLNETVRKYGINLPDRQLACAPLKSEDGQNYLAAMACASNYAWANRQCITQWARDA 312
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
F K F DL M+ IYDV+HNIAK EEHMVDGK + + VHRKG+TR+FP P IP
Sbjct: 313 FMKVFEKGRQDLGMNQIYDVAHNIAKIEEHMVDGKMQNVCVHRKGATRSFPAGRPEIPAI 372
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
Y+ GQPV+I G MG SYV GTE M+ETFGSTCHGAGR LSR+ +++ +++
Sbjct: 373 YRKVGQPVIIPGDMGRYSYVAVGTETAMKETFGSTCHGAGRMLSRSLAKKAASVPQLMEN 432
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L +QGIS+ + EEAPE+YK+V DVV+ H GI++ FK RP+ VIKG
Sbjct: 433 LRAQGISVMAGDIDSLAEEAPEAYKDVADVVEVTHKAGIARNIFKTRPLGVIKG 486
Score = 168 (64.2 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG+GNH+ E+Q+V EI+D AS G+++ GQV +IH+GSRG GHQV T Y +Q
Sbjct: 202 TLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIHTGSRGLGHQVCT---DY--VQ 256
Query: 145 IVDEIYDKW 153
+++E K+
Sbjct: 257 LLNETVRKY 265
Score = 135 (52.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +F IP GVG G I ++ D++ + G +W+L +G
Sbjct: 108 LRTNLSVREVQPKIDELLAELFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGE 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
+ED EE G + A+P +VS +AK RG Q+ G+G+
Sbjct: 168 SEDISLTEECGSLSGANPDRVSPKAKTRGSSQLGTL-GSGN 207
Score = 93 (37.8 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
++QIANVA LPGIVG+S+ +PD+H
Sbjct: 49 IEQIANVAFLPGIVGKSMAMPDIH 72
Score = 84 (34.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAED 464
++E LA+ +F IP GVG G I ++ D++ + G +W+L +G +ED
Sbjct: 121 IDELLAE-LFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGESED 170
>TIGR_CMR|DET_0823 [details] [associations]
symbol:DET_0823 "conserved hypothetical protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1690 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 OMA:MAIEEKG RefSeq:YP_181550.1
ProteinModelPortal:Q3Z899 SMR:Q3Z899 STRING:Q3Z899 PRIDE:Q3Z899
GeneID:3229904 KEGG:det:DET0823 PATRIC:21608705
ProtClustDB:CLSK837290 BioCyc:DETH243164:GJNF-824-MONOMER
Uniprot:Q3Z899
Length = 486
Score = 664 (238.8 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 137/294 (46%), Positives = 183/294 (62%)
Query: 126 SRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
+RG Q+ T +GNH+ E+Q+V EI+D AS G+++ GQV +IH+GSRG GHQV T
Sbjct: 194 TRG-SSQLGTLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIHTGSRGLGHQVCT 252
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDDLDMHVIYDA 237
D + + + +++ I DRQLACA + S + A A + DA
Sbjct: 253 DYVQLLNETVRKYGINLPDRQLACAPLKSEDGQNYLAAMACASNYAWANRQCITQWARDA 312
Query: 238 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVD 297
F K F DL M+ IYDV+HNIAK EEHMVDGK + + VHRKG+TR+FP P IP
Sbjct: 313 FMKVFEKGRQDLGMNQIYDVAHNIAKIEEHMVDGKMQNVCVHRKGATRSFPAGRPEIPAI 372
Query: 298 YQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNK 357
Y+ GQPV+I G MG SYV GTE M+ETFGSTCHGAGR LSR+ +++ +++
Sbjct: 373 YRKVGQPVIIPGDMGRYSYVAVGTETAMKETFGSTCHGAGRMLSRSLAKKAASVPQLMEN 432
Query: 358 LESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
L +QGIS+ + EEAPE+YK+V DVV+ H GI++ FK RP+ VIKG
Sbjct: 433 LRAQGISVMAGDIDSLAEEAPEAYKDVADVVEVTHKAGIARNIFKTRPLGVIKG 486
Score = 168 (64.2 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG+GNH+ E+Q+V EI+D AS G+++ GQV +IH+GSRG GHQV T Y +Q
Sbjct: 202 TLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIHTGSRGLGHQVCT---DY--VQ 256
Query: 145 IVDEIYDKW 153
+++E K+
Sbjct: 257 LLNETVRKY 265
Score = 135 (52.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 455 LREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIW 514
LR E + + L +F IP GVG G I ++ D++ + G +W+L +G
Sbjct: 108 LRTNLSVREVQPKIDELLAELFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGE 167
Query: 515 AEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
+ED EE G + A+P +VS +AK RG Q+ G+G+
Sbjct: 168 SEDISLTEECGSLSGANPDRVSPKAKTRGSSQLGTL-GSGN 207
Score = 93 (37.8 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
++QIANVA LPGIVG+S+ +PD+H
Sbjct: 49 IEQIANVAFLPGIVGKSMAMPDIH 72
Score = 84 (34.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 414 LNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAED 464
++E LA+ +F IP GVG G I ++ D++ + G +W+L +G +ED
Sbjct: 121 IDELLAE-LFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGESED 170
>UNIPROTKB|Q8TUS2 [details] [associations]
symbol:rtcB "tRNA-splicing ligase RtcB" species:190192
"Methanopyrus kandleri AV19" [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=TAS] [GO:0008452
"RNA ligase activity" evidence=TAS] InterPro:IPR004042
InterPro:IPR006141 InterPro:IPR006142 PRINTS:PR00379
PROSITE:PS50817 PROSITE:PS50818 PROSITE:PS50819 GO:GO:0046872
GO:GO:0003677 GO:GO:0090305 GO:GO:0004519 GO:GO:0006314
EMBL:AE009439 GenomeReviews:AE009439_GR GO:GO:0006388
InterPro:IPR003586 InterPro:IPR003587 SMART:SM00305 SMART:SM00306
GO:GO:0016539 TIGRFAMs:TIGR01443 TIGRFAMs:TIGR01445 eggNOG:COG1372
KO:K14415 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 GO:GO:0008452 RefSeq:NP_614965.1
ProteinModelPortal:Q8TUS2 SMR:Q8TUS2 GeneID:1478277 KEGG:mka:MK1682
HOGENOM:HOG000296282 OMA:VHNCGVR Uniprot:Q8TUS2
Length = 988
Score = 652 (234.6 bits), Expect = 2.5e-70, Sum P(2) = 2.5e-70
Identities = 137/293 (46%), Positives = 191/293 (65%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMK- 194
+GNH+ E+Q+VDEIYDK AA KMGI + GQV +M+H+GSRGFGHQV +D L ME++M+
Sbjct: 697 SGNHFLEVQVVDEIYDKEAAEKMGIREEGQVTIMVHTGSRGFGHQVCSDHLRIMERSMRD 756
Query: 195 ---RDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTT 245
R + DRQLACA + +++ K + N + + H ++F + F
Sbjct: 757 VERRFGVRIPDRQLACAAMGTDEAKRYFNAMNAAANYAFANRQMISHWTRESFVEVFGDE 816
Query: 246 ---PDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPH----HPLIPVDY 298
DD+ + VIYD++HN+AK E+H VDG+++ L+VHRKG+TRAF H PV +
Sbjct: 817 YGDADDMGIEVIYDIAHNMAKIEKHPVDGEERWLVVHRKGATRAFSEEALKKHGE-PVPF 875
Query: 299 QLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL 358
+ QPVLI G MGT SY+L GTEK M+ET+GSTCHGAGR +SRA ++R ++V +L
Sbjct: 876 EGLPQPVLIPGDMGTGSYILIGTEKAMEETWGSTCHGAGRTMSRAAAKRKFWGEDVAREL 935
Query: 359 ESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
E QGI ++ AS +V EEAP +YK+V +VV GIS +LRP+ V+KG
Sbjct: 936 ERQGILVKAASMPVVAEEAPPAYKDVDEVVRAVAEAGISDPVVRLRPIGVVKG 988
Score = 201 (75.8 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLG+GNH+ E+Q+VDEIYDK AA KMGI + GQV +M+H+GSRGFGHQV +
Sbjct: 694 TLGSGNHFLEVQVVDEIYDKEAAEKMGIREEGQVTIMVHTGSRGFGHQVCS 744
Score = 105 (42.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 28/97 (28%), Positives = 53/97 (54%)
Query: 471 LAQSMFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLN 529
L +++F ++P G+GS+ + ++ ++L + + G +W++ EG+ + ED +H E G M +
Sbjct: 604 LLETIFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIESRGNMTH 663
Query: 530 A---------DPSK--VSMRAKKRGLPQVSDRRGTGS 555
A P S RA +RG PQ+ G+G+
Sbjct: 664 AYETIGWEEYGPRDDVASKRAIERGRPQLGTL-GSGN 699
Score = 94 (38.1 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 21/87 (24%), Positives = 48/87 (55%)
Query: 418 LAQSMFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMF 476
L +++F ++P G+GS+ + ++ ++L + + G +W++ EG+ + ED +H E ++
Sbjct: 604 LLETIFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIE--SRGNM 661
Query: 477 DHIPVGVGSKGIIPMNARDLEEALEMG 503
H +G + P + + A+E G
Sbjct: 662 THAYETIGWEEYGPRDDVASKRAIERG 688
Score = 88 (36.0 bits), Expect = 2.5e-70, Sum P(2) = 2.5e-70
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 29 MVGGFLPGV-KQIANVAALPGIVGRSVGLPDVH 60
++ G GV Q+ANVA LPGI G S+ LPD H
Sbjct: 38 LIDGMEKGVFDQVANVACLPGIYGYSIALPDAH 70
>UNIPROTKB|Q8ZY09 [details] [associations]
symbol:rtcB "tRNA-splicing ligase RtcB" species:178306
"Pyrobaculum aerophilum str. IM2" [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IDA] [GO:0008452
"RNA ligase activity" evidence=TAS] GO:GO:0046872 GO:GO:0006388
EMBL:AE009441 GenomeReviews:AE009441_GR eggNOG:COG1690 KO:K14415
OMA:GRMLNAD InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 GO:GO:0008452 HOGENOM:HOG000220065
RefSeq:NP_559005.1 ProteinModelPortal:Q8ZY09 SMR:Q8ZY09
GeneID:1465422 KEGG:pai:PAE0998 ProtClustDB:CLSK899593
Uniprot:Q8ZY09
Length = 484
Score = 634 (228.2 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 134/284 (47%), Positives = 182/284 (64%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVATD L+ ME+ M++
Sbjct: 202 SGNHFLEIQVVDKIYDEKIAKLFGIEREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQ 261
Query: 196 DNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDL 249
+ DR+LA A + K A A F T + MH + +AF K F + + +
Sbjct: 262 WGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSI-EKV 320
Query: 250 DMHVIYDVSHNIAKTEEHMVD--GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ V+YDV+HNIAK EEH+VD G + + VHRKG+TRAFPP IP Y+ GQPVLI
Sbjct: 321 GLEVVYDVAHNIAKLEEHVVDEKGTVRKVWVHRKGATRAFPPGRSEIPAKYREVGQPVLI 380
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G+MGT S++L GT M+ TFG+ HGAGR LSR + R +V ++ +GI +R
Sbjct: 381 PGSMGTASWILVGTHDAMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMAKRGIIVRS 440
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A +++ EEAP +YK+V VV+ H VG +KK + RP+ V+KG
Sbjct: 441 AETEVISEEAPWAYKDVDRVVEAAHQVGFAKKVVRQRPIGVVKG 484
Score = 188 (71.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFGHQVAT
Sbjct: 199 TLGSGNHFLEIQVVDKIYDEKIAKLFGIEREGQVVVMIHTGSRGFGHQVAT 249
Score = 174 (66.3 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 37/94 (39%), Positives = 57/94 (60%)
Query: 463 ED-KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 521
ED + + L ++F +P GVG G + ++ + E L G++W++++GY WAED E+
Sbjct: 112 EDVRPKLKELVDTIFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYI 171
Query: 522 EEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
EE G ADPSKVS +AK RG Q+ G+G+
Sbjct: 172 EERGSWKLADPSKVSEKAKARGRDQLGTL-GSGN 204
Score = 113 (44.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
+ L ++F +P GVG G + ++ + E L G++W++++GY WAED E+ E
Sbjct: 119 KELVDTIFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIE 172
Score = 56 (24.8 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
++Q NV LPGI S+ LPD H
Sbjct: 46 LEQGINVGCLPGIYRWSIVLPDAH 69
>UNIPROTKB|P71930 [details] [associations]
symbol:rtcB "RNA-splicing ligase RtcB" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] GO:GO:0005618
GO:GO:0005576 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0046872 GO:GO:0016874
eggNOG:COG1690 KO:K14415 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
PIR:C70963 RefSeq:NP_217147.2 RefSeq:NP_337208.1
RefSeq:YP_006516074.1 ProteinModelPortal:P71930 SMR:P71930
PRIDE:P71930 EnsemblBacteria:EBMYCT00000000852
EnsemblBacteria:EBMYCT00000072233 GeneID:13319353 GeneID:887431
GeneID:925603 KEGG:mtc:MT2707 KEGG:mtu:Rv2631 KEGG:mtv:RVBD_2631
PATRIC:18127692 TubercuList:Rv2631 HOGENOM:HOG000220065
ProtClustDB:CLSK881399 Uniprot:P71930
Length = 432
Score = 599 (215.9 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 126/290 (43%), Positives = 182/290 (62%)
Query: 127 RGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATD 184
RG G Q+ + +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ TD
Sbjct: 149 RGLG-QIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICTD 206
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPD--DLDMHVIYDAFAKQF 242
+ QME+AM R I DRQLAC ++S +A+ + + ++ +A + F
Sbjct: 207 HVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRVF 266
Query: 243 -NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLT 301
+ T LD+ +YDVSHN+AK E H +DG+ +++ VHRKG+TR+ PPHH +P +
Sbjct: 267 ADATGTPLDL--LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLPPHHHELPAELAAV 324
Query: 302 GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQ 361
GQPVLI GTMGT SYVL G G F ST HGAGR LSR ++ R+ + + L +
Sbjct: 325 GQPVLIPGTMGTASYVLAGVT-G-NPAFFSTAHGAGRVLSRHQAARHTSGEAIRASLAKR 382
Query: 362 GISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
GI +R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 383 GIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Score = 179 (68.1 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 44/124 (35%), Positives = 69/124 (55%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+ T +H ++
Sbjct: 156 SLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQICT--DH---VR 209
Query: 145 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQ 204
+++ ++ + + D CV +HS G + A A +A ++ E R
Sbjct: 210 QMEQAMGRYG---IAVPDRQLACVPVHSPD-GQAYLAAMAAAANYGRANRQLLTEATRRV 265
Query: 205 LACA 208
A A
Sbjct: 266 FADA 269
Score = 126 (49.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 464 DKEHFERLAQSMFDH----IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDK 518
D+E + ++ D IP GVG+ G+ + R+ L+E L G +++ +G+ A D
Sbjct: 66 DREELQPRLPAVMDRLDRAIPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDL 125
Query: 519 EHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
E CE+ G M AD +K+S RA +RGL Q+ G+G+
Sbjct: 126 ERCEDGGVMTGADAAKISDRALQRGLGQIGSL-GSGN 161
Score = 74 (31.1 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 39 QIANVAALPGIVGRSVGLPDVH 60
Q+ NVA LPGIV S +PDVH
Sbjct: 2 QVVNVATLPGIVRASYAMPDVH 23
>UNIPROTKB|Q74CI9 [details] [associations]
symbol:GSU1684 "Uncharacterized protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE017180
GenomeReviews:AE017180_GR KO:K14415 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
HOGENOM:HOG000220065 RefSeq:NP_952735.1 ProteinModelPortal:Q74CI9
SMR:Q74CI9 GeneID:2687257 KEGG:gsu:GSU1684 PATRIC:22026217
ProtClustDB:CLSK828484 BioCyc:GSUL243231:GH27-1705-MONOMER
Uniprot:Q74CI9
Length = 485
Score = 570 (205.7 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 124/296 (41%), Positives = 181/296 (61%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ +Q+ T +GNHY E+Q+ + I+D+ A GI QV +M H GSRGFGHQVA
Sbjct: 192 RGY-NQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRGFGHQVA 250
Query: 183 TDALVQMEKAM-KRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD L M K+ I TNDR+LACA S + + + + + +H I
Sbjct: 251 TDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F+ F P DL M ++YDV+HN AK E H+VDGK++ LLVHRKG+TRAF P IP
Sbjct: 311 EVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATRAFGPGMEGIP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ TGQPV+IGG+M T SY+L G + G +TF +T HG+GR +SR ++++ + Q++
Sbjct: 371 ARYRETGQPVIIGGSMETGSYLLAG-DPGGGDTFFTTAHGSGRTMSRHQAKKLIKGQKLQ 429
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+E +GI +R AS + EEA ++YKN+ DV + +S++ +L P+ +KG
Sbjct: 430 RDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPIGNVKG 485
Score = 169 (64.5 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E K L ++F +P GVGS G + ++ + E G W L+ GY W ED E
Sbjct: 111 YEEVKPRLRELVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEM 170
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
EE+G AD +KVS RA RG Q+ G+G+
Sbjct: 171 TEEHGCFTGADATKVSQRAVDRGYNQIGTL-GSGN 204
Score = 147 (56.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 85 TLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLG+GNHY E+Q+ + I+D+ A GI QV +M H GSRGFGHQVAT
Sbjct: 199 TLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRGFGHQVAT 251
Score = 105 (42.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVGS G + ++ + E G W L+ GY W ED E E
Sbjct: 121 LVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTE 172
Score = 60 (26.2 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 14 EKLMLEELRNSCRPGMVGGFLPGV-KQIANVAALPGIVGRSVGLPDVH 60
+K ML R ++ GV +Q++NVA LPGI + +PD H
Sbjct: 22 KKGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQKYAFCMPDGH 69
>TIGR_CMR|GSU_1684 [details] [associations]
symbol:GSU_1684 "conserved hypothetical protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE017180 GenomeReviews:AE017180_GR KO:K14415 OMA:GRMLNAD
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 RefSeq:NP_952735.1
ProteinModelPortal:Q74CI9 SMR:Q74CI9 GeneID:2687257
KEGG:gsu:GSU1684 PATRIC:22026217 ProtClustDB:CLSK828484
BioCyc:GSUL243231:GH27-1705-MONOMER Uniprot:Q74CI9
Length = 485
Score = 570 (205.7 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 124/296 (41%), Positives = 181/296 (61%)
Query: 127 RGFGHQVAT--AGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 182
RG+ +Q+ T +GNHY E+Q+ + I+D+ A GI QV +M H GSRGFGHQVA
Sbjct: 192 RGY-NQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRGFGHQVA 250
Query: 183 TDALVQMEKAM-KRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIY 235
TD L M K+ I TNDR+LACA S + + + + + +H I
Sbjct: 251 TDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIR 310
Query: 236 DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIP 295
+ F+ F P DL M ++YDV+HN AK E H+VDGK++ LLVHRKG+TRAF P IP
Sbjct: 311 EVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATRAFGPGMEGIP 370
Query: 296 VDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVL 355
Y+ TGQPV+IGG+M T SY+L G + G +TF +T HG+GR +SR ++++ + Q++
Sbjct: 371 ARYRETGQPVIIGGSMETGSYLLAG-DPGGGDTFFTTAHGSGRTMSRHQAKKLIKGQKLQ 429
Query: 356 NKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
+E +GI +R AS + EEA ++YKN+ DV + +S++ +L P+ +KG
Sbjct: 430 RDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPIGNVKG 485
Score = 169 (64.5 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 461 WAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEH 520
+ E K L ++F +P GVGS G + ++ + E G W L+ GY W ED E
Sbjct: 111 YEEVKPRLRELVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEM 170
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGS 555
EE+G AD +KVS RA RG Q+ G+G+
Sbjct: 171 TEEHGCFTGADATKVSQRAVDRGYNQIGTL-GSGN 204
Score = 147 (56.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 85 TLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLG+GNHY E+Q+ + I+D+ A GI QV +M H GSRGFGHQVAT
Sbjct: 199 TLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRGFGHQVAT 251
Score = 105 (42.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 418 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE 469
L ++F +P GVGS G + ++ + E G W L+ GY W ED E E
Sbjct: 121 LVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTE 172
Score = 60 (26.2 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 14 EKLMLEELRNSCRPGMVGGFLPGV-KQIANVAALPGIVGRSVGLPDVH 60
+K ML R ++ GV +Q++NVA LPGI + +PD H
Sbjct: 22 KKGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQKYAFCMPDGH 69
>UNIPROTKB|Q60CB4 [details] [associations]
symbol:MCA0195 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE017282 GenomeReviews:AE017282_GR KO:K14415 OMA:GRMLNAD
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
HOGENOM:HOG000220065 RefSeq:YP_112731.1 ProteinModelPortal:Q60CB4
SMR:Q60CB4 GeneID:3104824 KEGG:mca:MCA0195 PATRIC:22604123
Uniprot:Q60CB4
Length = 476
Score = 558 (201.5 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 121/278 (43%), Positives = 167/278 (60%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNHY E+Q V EI+D +A GI + G V V IH GSRG GHQ+ T+ L M+ A K+
Sbjct: 200 SGNHYLEVQEVTEIFDAGSAQTFGISE-GDVVVSIHCGSRGLGHQIGTEYLRLMQGAAKQ 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD-DLDMHVIYDAFAKQ-FNTTPDDLDMHV 253
I DR+LACA I S + + + L I +Q F + +
Sbjct: 259 HGIALPDRELACAPIESEVGQDYLGAMRAAINCALANRQILTHLTRQVFARVLPAARLEL 318
Query: 254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGT 313
+YDVSHN K EEH+V+GK++ L VHRKG+TRA+ P HP +P + TGQPVLIGG+MGT
Sbjct: 319 LYDVSHNTCKFEEHLVEGKRRRLHVHRKGATRAYGPGHPDLPPAFAETGQPVLIGGSMGT 378
Query: 314 CSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLV 373
SY+L GT +F S CHGAGR++SR ++ R +EV+++L +GI IR S + V
Sbjct: 379 ASYILAGTSGSETLSFASACHGAGRSMSRHQATRTWQGREVIDQLAERGILIRSPSYRGV 438
Query: 374 MEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
EEAP +YK+V VV + G+++ +L P+ IKG
Sbjct: 439 AEEAPGAYKDVHAVVQSSDRAGLARLVARLEPIICIKG 476
Score = 148 (57.2 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 29/51 (56%), Positives = 35/51 (68%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 135
TLG+GNHY E+Q V EI+D +A GI + G V V IH GSRG GHQ+ T
Sbjct: 197 TLGSGNHYLEVQEVTEIFDAGSAQTFGISE-GDVVVSIHCGSRGLGHQIGT 246
Score = 148 (57.2 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 471 LAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA 530
LA +++ IPVG+GS G I ++A+ L+ L+ G W++ +G+ A D EE+GRM A
Sbjct: 119 LADTLYADIPVGLGSHGKIRLDAQGLDAMLKGGAQWAVEQGWGEARDLTRIEEHGRMEGA 178
Query: 531 DPSKVSMRAKKR 542
P VS RAK+R
Sbjct: 179 RPENVSARAKER 190
Score = 72 (30.4 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
++Q ANVA LPGIV S +PD H
Sbjct: 43 LEQAANVAGLPGIVQASYAMPDAH 66
>UNIPROTKB|Q3AFN5 [details] [associations]
symbol:CHY_0177 "Putative uncharacterized protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG1690
KO:K14415 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 HOGENOM:HOG000220065 OMA:MAIEEKG
RefSeq:YP_359049.1 ProteinModelPortal:Q3AFN5 STRING:Q3AFN5
GeneID:3727166 KEGG:chy:CHY_0177 PATRIC:21273535
BioCyc:CHYD246194:GJCN-178-MONOMER Uniprot:Q3AFN5
Length = 467
Score = 421 (153.3 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 106/291 (36%), Positives = 164/291 (56%)
Query: 125 GSRGFGHQVATAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
G+ G G GNH+ E+Q+V E+ +W A G+ G +C+M+H+GSRG GHQV T
Sbjct: 188 GAEGLG--TLGGGNHFIEVQVVAEVR-RWEVAQSFGLYP-GMLCLMVHTGSRGLGHQVCT 243
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQ 241
D + KA + N+ + LA +S + + + + + + + +I +
Sbjct: 244 DYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYLRQV 303
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQL 300
F + D + ++YD++HNIAK E H DG + +LVHRKG+TRA P H +P ++
Sbjct: 304 FKSYLGDGKLDLVYDLAHNIAKEEYH--DGIK--VLVHRKGATRALPAGHRENLP-QFRE 358
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPVLI G+MGT SYVL T + TF S HGAGR++SR S +NL EV L
Sbjct: 359 IGQPVLIPGSMGTKSYVLRATSN-ISLTFNSLNHGAGRSMSRKASLKNLTVSEVKKALGD 417
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ +V + V +EAP++YK++ V++ G+++ L+P+AVIKG
Sbjct: 418 VILNEKV---EYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKG 465
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 85 TLGAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEI 143
TLG GNH+ E+Q+V E+ +W A G+ G +C+M+H+GSRG GHQV T Y EI
Sbjct: 194 TLGGGNHFIEVQVVAEVR-RWEVAQSFGLYP-GMLCLMVHTGSRGLGHQVCT---DYTEI 248
Score = 66 (28.3 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
+KQ+ N A+LPG+ G+PD+H
Sbjct: 40 LKQLQNAASLPGVYRAVYGMPDLH 63
>TIGR_CMR|CHY_0177 [details] [associations]
symbol:CHY_0177 "conserved hypothetical protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG1690
KO:K14415 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 HOGENOM:HOG000220065 OMA:MAIEEKG
RefSeq:YP_359049.1 ProteinModelPortal:Q3AFN5 STRING:Q3AFN5
GeneID:3727166 KEGG:chy:CHY_0177 PATRIC:21273535
BioCyc:CHYD246194:GJCN-178-MONOMER Uniprot:Q3AFN5
Length = 467
Score = 421 (153.3 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 106/291 (36%), Positives = 164/291 (56%)
Query: 125 GSRGFGHQVATAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSRGFGHQVAT 183
G+ G G GNH+ E+Q+V E+ +W A G+ G +C+M+H+GSRG GHQV T
Sbjct: 188 GAEGLG--TLGGGNHFIEVQVVAEVR-RWEVAQSFGLYP-GMLCLMVHTGSRGLGHQVCT 243
Query: 184 DALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDL--DMHVIYDAFAKQ 241
D + KA + N+ + LA +S + + + + + + + +I +
Sbjct: 244 DYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYLRQV 303
Query: 242 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPP-HHPLIPVDYQL 300
F + D + ++YD++HNIAK E H DG + +LVHRKG+TRA P H +P ++
Sbjct: 304 FKSYLGDGKLDLVYDLAHNIAKEEYH--DGIK--VLVHRKGATRALPAGHRENLP-QFRE 358
Query: 301 TGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLES 360
GQPVLI G+MGT SYVL T + TF S HGAGR++SR S +NL EV L
Sbjct: 359 IGQPVLIPGSMGTKSYVLRATSN-ISLTFNSLNHGAGRSMSRKASLKNLTVSEVKKALGD 417
Query: 361 QGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
++ +V + V +EAP++YK++ V++ G+++ L+P+AVIKG
Sbjct: 418 VILNEKV---EYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKG 465
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 85 TLGAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEI 143
TLG GNH+ E+Q+V E+ +W A G+ G +C+M+H+GSRG GHQV T Y EI
Sbjct: 194 TLGGGNHFIEVQVVAEVR-RWEVAQSFGLYP-GMLCLMVHTGSRGLGHQVCT---DYTEI 248
Score = 66 (28.3 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 37 VKQIANVAALPGIVGRSVGLPDVH 60
+KQ+ N A+LPG+ G+PD+H
Sbjct: 40 LKQLQNAASLPGVYRAVYGMPDLH 63
>GENEDB_PFALCIPARUM|PFL1060c [details] [associations]
symbol:PFL1060c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0020011 "apicoplast" evidence=RCA] EMBL:AE014188 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
HOGENOM:HOG000220066 RefSeq:XP_001350618.1
ProteinModelPortal:Q8I5J3 PRIDE:Q8I5J3
EnsemblProtists:PFL1060c:mRNA GeneID:811264 KEGG:pfa:PFL1060c
EuPathDB:PlasmoDB:PF3D7_1222000 OMA:VPIRMWA ProtClustDB:CLSZ2733828
Uniprot:Q8I5J3
Length = 569
Score = 195 (73.7 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 74/260 (28%), Positives = 120/260 (46%)
Query: 161 EDVGQVCVMIHSGSRGFGHQVAT--DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
+D+ V ++IHSGSR G VA D L E MKR ND LA + + K +
Sbjct: 337 DDLSDVYILIHSGSRNIGKSVAEFYDILASEESKMKR-----ND--LAYLDLKKDNGKNY 389
Query: 219 AKQFNTTPDDLDMHVIY--DAFAKQ-FNTTPDDLDMHVIYDVSHNIAKTEEHM-VDG--- 271
K + + IY K + T L+ ++ HN E+ M +D
Sbjct: 390 LKDMKVCLEYAKYNRIYMMKIIEKIIYEETKCTLNWDQSINIHHNFCNYEKVMYLDNNEI 449
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K++ + V RKG+T + + +IP G M T SY++ G KG ++ S
Sbjct: 450 KKEYMYVTRKGATSSKKNQYGIIP-------------GNMKTGSYIVKG--KGNVLSYNS 494
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
HG GR LSR K+++ + QE ++ ++ ++ + + +EAP++YKN+ V+
Sbjct: 495 CSHGCGRVLSRTKAKQFIKQQEFIDIMKG----VKCDTNNKIRDEAPQAYKNLNQVLKNQ 550
Query: 392 HAVGISKKTFKLRPVAVIKG 411
++ K KL P+ IKG
Sbjct: 551 ESLIYLIK--KLNPIINIKG 568
Score = 60 (26.2 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 113 EDVGQVCVMIHSGSRGFGHQVA 134
+D+ V ++IHSGSR G VA
Sbjct: 337 DDLSDVYILIHSGSRNIGKSVA 358
Score = 49 (22.3 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 85 TLGAGNHYAEIQIVDEIYD--KWAASKMGIED 114
TLG GNH+ EI + D D K ++ I+D
Sbjct: 233 TLGGGNHFIEI-VYDASDDLNKTQKEELSIKD 263
Score = 48 (22.0 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 39 QIANVAALPGIVGRSVGLPDVH 60
QI N+A L I G LPDVH
Sbjct: 109 QIQNLARLDIIKGHITILPDVH 130
>UNIPROTKB|Q8I5J3 [details] [associations]
symbol:PFL1060c "Conserved protein" species:36329
"Plasmodium falciparum 3D7" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0020011
"apicoplast" evidence=RCA] EMBL:AE014188 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
HOGENOM:HOG000220066 RefSeq:XP_001350618.1
ProteinModelPortal:Q8I5J3 PRIDE:Q8I5J3
EnsemblProtists:PFL1060c:mRNA GeneID:811264 KEGG:pfa:PFL1060c
EuPathDB:PlasmoDB:PF3D7_1222000 OMA:VPIRMWA ProtClustDB:CLSZ2733828
Uniprot:Q8I5J3
Length = 569
Score = 195 (73.7 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 74/260 (28%), Positives = 120/260 (46%)
Query: 161 EDVGQVCVMIHSGSRGFGHQVAT--DALVQMEKAMKRDNIETNDRQLACARINSNKNKAF 218
+D+ V ++IHSGSR G VA D L E MKR ND LA + + K +
Sbjct: 337 DDLSDVYILIHSGSRNIGKSVAEFYDILASEESKMKR-----ND--LAYLDLKKDNGKNY 389
Query: 219 AKQFNTTPDDLDMHVIY--DAFAKQ-FNTTPDDLDMHVIYDVSHNIAKTEEHM-VDG--- 271
K + + IY K + T L+ ++ HN E+ M +D
Sbjct: 390 LKDMKVCLEYAKYNRIYMMKIIEKIIYEETKCTLNWDQSINIHHNFCNYEKVMYLDNNEI 449
Query: 272 KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGS 331
K++ + V RKG+T + + +IP G M T SY++ G KG ++ S
Sbjct: 450 KKEYMYVTRKGATSSKKNQYGIIP-------------GNMKTGSYIVKG--KGNVLSYNS 494
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTC 391
HG GR LSR K+++ + QE ++ ++ ++ + + +EAP++YKN+ V+
Sbjct: 495 CSHGCGRVLSRTKAKQFIKQQEFIDIMKG----VKCDTNNKIRDEAPQAYKNLNQVLKNQ 550
Query: 392 HAVGISKKTFKLRPVAVIKG 411
++ K KL P+ IKG
Sbjct: 551 ESLIYLIK--KLNPIINIKG 568
Score = 60 (26.2 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 113 EDVGQVCVMIHSGSRGFGHQVA 134
+D+ V ++IHSGSR G VA
Sbjct: 337 DDLSDVYILIHSGSRNIGKSVA 358
Score = 49 (22.3 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 85 TLGAGNHYAEIQIVDEIYD--KWAASKMGIED 114
TLG GNH+ EI + D D K ++ I+D
Sbjct: 233 TLGGGNHFIEI-VYDASDDLNKTQKEELSIKD 263
Score = 48 (22.0 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 39 QIANVAALPGIVGRSVGLPDVH 60
QI N+A L I G LPDVH
Sbjct: 109 QIQNLARLDIIKGHITILPDVH 130
>UNIPROTKB|P46850 [details] [associations]
symbol:rtcB "RNA ligase" species:83333 "Escherichia coli
K-12" [GO:0006396 "RNA processing" evidence=IDA] [GO:0042245 "RNA
repair" evidence=EXP;TAS] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0008452 "RNA ligase activity" evidence=IDA]
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0006396 GO:GO:0030145
GO:GO:0042245 eggNOG:COG1690 KO:K14415 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
PIR:H65137 RefSeq:NP_417879.1 RefSeq:YP_492012.1
ProteinModelPortal:P46850 SMR:P46850 IntAct:P46850
SWISS-2DPAGE:P46850 EnsemblBacteria:EBESCT00000000985
EnsemblBacteria:EBESCT00000017447 GeneID:12932194 GeneID:947929
KEGG:ecj:Y75_p3756 KEGG:eco:b3421 PATRIC:32122278 EchoBASE:EB2774
EcoGene:EG12939 HOGENOM:HOG000220066 OMA:FKHLAVM
ProtClustDB:CLSK880652 BioCyc:EcoCyc:G7751-MONOMER
BioCyc:ECOL316407:JW3384-MONOMER BioCyc:MetaCyc:G7751-MONOMER
Genevestigator:P46850 GO:GO:0008452 Uniprot:P46850
Length = 408
Score = 170 (64.9 bits), Expect = 8.7e-15, Sum P(3) = 8.7e-15
Identities = 66/239 (27%), Positives = 114/239 (47%)
Query: 160 IEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIET-NDRQLACARINSN----- 213
+++ QV +M+HSGSRG G+ + T + +K M+ + +ET R LA +
Sbjct: 174 LDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQ-ETLETLPSRDLAYFMEGTEYFDDY 232
Query: 214 -KNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTT---PDDLDMHVIYDVSHNIAKTEEHMV 269
K A+A+ F + D M + A T P L M I + HN + E+H
Sbjct: 233 LKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEI-NCHHNYVQKEQHF- 290
Query: 270 DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETF 329
G++ + V RKG+ A + +IP G+MG S+++ G G +E+F
Sbjct: 291 -GEE--IYVTRKGAVSARAGQYGIIP-------------GSMGAKSFIVRGL--GNEESF 332
Query: 330 GSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVV 388
S HGAGR +SR K+++ ++ + + + R + V++E P +YK++ V+
Sbjct: 333 CSCSHGAGRVMSRTKAKKLFSVEDQIRA--TAHVECRKDAE--VIDEIPMAYKDIDAVM 387
Score = 86 (35.3 bits), Expect = 8.7e-15, Sum P(3) = 8.7e-15
Identities = 28/71 (39%), Positives = 35/71 (49%)
Query: 66 QWLSDNTMRSSNIWKRSPL-TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHS 124
QWL+ R N L TLG GNH+ EI +DE D QV +M+HS
Sbjct: 142 QWLTQKYPRFLNTNNYKHLGTLGTGNHFIEI-CLDE------------SD--QVWIMLHS 186
Query: 125 GSRGFGHQVAT 135
GSRG G+ + T
Sbjct: 187 GSRGIGNAIGT 197
Score = 45 (20.9 bits), Expect = 8.7e-15, Sum P(3) = 8.7e-15
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 38 KQIANVAALPGIVGRSVGLPDVH 60
+Q+ N A +P I +PDVH
Sbjct: 28 QQLINTAKMPFIFKHIAVMPDVH 50
>UNIPROTKB|Q724F9 [details] [associations]
symbol:LMOf2365_0265 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE017262 GenomeReviews:AE017262_GR eggNOG:COG1690
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
HOGENOM:HOG000220066 OMA:FKHLAVM RefSeq:YP_012875.1
ProteinModelPortal:Q724F9 STRING:Q724F9 GeneID:2797203
KEGG:lmf:LMOf2365_0265 PATRIC:20321743 ProtClustDB:CLSK2302046
Uniprot:Q724F9
Length = 392
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 62/257 (24%), Positives = 105/257 (40%)
Query: 166 VCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTT 225
+ ++IHSGSR G ++A E A KR +I + +L N A N
Sbjct: 153 IYLVIHSGSRVLGKEIAE---YHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGE 209
Query: 226 PDD--LDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGS 283
+ LD + Y N +D+++ + + E + K ++V
Sbjct: 210 REQVKLDYDLSY-VTGSDLNNYLNDMEIAQKFAARNRYVMAETILKAMKWDKIVVS---- 264
Query: 284 TRAFPPHHPLIPVDYQLT---------GQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH 334
AF H I +D + G+ +++ M S + TG KG + S H
Sbjct: 265 --AFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMRDGSILATG--KGNADWNYSAPH 320
Query: 335 GAGRALSRAKSRRNLD---YQEVLNKLESQGISIRVASPKLVMEEAPESYKN----VTDV 387
GAGR LSR+K++ + YQ + + + +S K ++EAP++YK+ + DV
Sbjct: 321 GAGRMLSRSKAKAQISLESYQAAMKDVWTTSVS------KKTIDEAPKAYKSAKQLLVDV 374
Query: 388 VDTCHAVGISKKTFKLR 404
DT I K + +
Sbjct: 375 EDTMEIQEIIKPLYNFK 391
>UNIPROTKB|Q81P21 [details] [associations]
symbol:BAS2787 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR InterPro:IPR001233 PANTHER:PTHR11118
Pfam:PF01139 SUPFAM:SSF103365 HOGENOM:HOG000220066 OMA:FKHLAVM
RefSeq:NP_845331.1 RefSeq:YP_019642.1 RefSeq:YP_029045.1
ProteinModelPortal:Q81P21 DNASU:1084580
EnsemblBacteria:EBBACT00000012658 EnsemblBacteria:EBBACT00000017074
EnsemblBacteria:EBBACT00000022635 GeneID:1084580 GeneID:2818666
GeneID:2847861 KEGG:ban:BA_2999 KEGG:bar:GBAA_2999 KEGG:bat:BAS2787
ProtClustDB:CLSK895087 BioCyc:BANT260799:GJAJ-2850-MONOMER
BioCyc:BANT261594:GJ7F-2957-MONOMER Uniprot:Q81P21
Length = 395
Score = 86 (35.3 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ E+ +E +D G V ++IHSGSR G Q+A ++A Q
Sbjct: 139 TLGGGNHFVEL---NE------------DDKGNVYIVIHSGSRNLGKQIAEYYQNFAYEQ 183
Query: 145 IVD 147
++D
Sbjct: 184 LID 186
Score = 79 (32.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
V+I M S + G KG + S HG GR +SR K++ +L +E N + +
Sbjct: 295 VIIPINMRDGSIIAFG--KGNPDWNFSGPHGPGRIMSRKKAKESLSLEEFQNTMTEVWTT 352
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIY 413
V S ++EAP YK + ++++ +K+T ++ + IK +Y
Sbjct: 353 SVVES---TIDEAPMVYKPMDEIIEN------TKETIDIKHI--IKPLY 390
>TIGR_CMR|BA_2999 [details] [associations]
symbol:BA_2999 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
HOGENOM:HOG000220066 OMA:FKHLAVM RefSeq:NP_845331.1
RefSeq:YP_019642.1 RefSeq:YP_029045.1 ProteinModelPortal:Q81P21
DNASU:1084580 EnsemblBacteria:EBBACT00000012658
EnsemblBacteria:EBBACT00000017074 EnsemblBacteria:EBBACT00000022635
GeneID:1084580 GeneID:2818666 GeneID:2847861 KEGG:ban:BA_2999
KEGG:bar:GBAA_2999 KEGG:bat:BAS2787 ProtClustDB:CLSK895087
BioCyc:BANT260799:GJAJ-2850-MONOMER
BioCyc:BANT261594:GJ7F-2957-MONOMER Uniprot:Q81P21
Length = 395
Score = 86 (35.3 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 85 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQ 144
TLG GNH+ E+ +E +D G V ++IHSGSR G Q+A ++A Q
Sbjct: 139 TLGGGNHFVEL---NE------------DDKGNVYIVIHSGSRNLGKQIAEYYQNFAYEQ 183
Query: 145 IVD 147
++D
Sbjct: 184 LID 186
Score = 79 (32.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 305 VLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGIS 364
V+I M S + G KG + S HG GR +SR K++ +L +E N + +
Sbjct: 295 VIIPINMRDGSIIAFG--KGNPDWNFSGPHGPGRIMSRKKAKESLSLEEFQNTMTEVWTT 352
Query: 365 IRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIY 413
V S ++EAP YK + ++++ +K+T ++ + IK +Y
Sbjct: 353 SVVES---TIDEAPMVYKPMDEIIEN------TKETIDIKHI--IKPLY 390
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 574 574 0.00080 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 619 (66 KB)
Total size of DFA: 339 KB (2168 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.13u 0.12s 50.25t Elapsed: 00:00:04
Total cpu time: 50.14u 0.12s 50.26t Elapsed: 00:00:04
Start: Thu Aug 15 16:54:40 2013 End: Thu Aug 15 16:54:44 2013