RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10975
(574 letters)
>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown
function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP:
d.261.1.1
Length = 481
Score = 307 bits (788), Expect = 7e-99
Identities = 129/283 (45%), Positives = 181/283 (63%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 200 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 258
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + + + H + ++F + F P+ D
Sbjct: 259 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 318
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 319 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 378
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 379 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 438
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 439 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481
Score = 76.7 bits (188), Expect = 5e-15
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E EE
Sbjct: 113 RPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEG 172
Query: 525 GRMLNADPSKVSMRAKKRGLPQVS 548
GRM ADP VS RAK+RG PQ+
Sbjct: 173 GRMEGADPEAVSQRAKQRGAPQLG 196
Score = 52.8 bits (126), Expect = 2e-07
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 416 ERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---RLA 472
++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E E R+
Sbjct: 117 KQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRME 176
Query: 473 QSMFDHIPVGVGSKGIIPMNAR------------DLEEALEMGMDWSLREGYIWAEDKEH 520
+ + + +G + + D E+ + L EG +
Sbjct: 177 GADPEAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFEGQVVVMVHTG 236
Query: 521 CEEYGRMLNADPSKVSMRAKKRGLPQVSDR 550
G + +D ++ RA ++ DR
Sbjct: 237 SRGLGHQVASDYLRIMERAIRKYRIPWPDR 266
Score = 50.5 bits (120), Expect = 9e-07
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G + ++ L + M + ++Q NVA LPGI S+ +PD H
Sbjct: 22 MRVPGRVYADEVLLEKMKND--------------RTLEQATNVAMLPGIYKYSIVMPDGH 67
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural
genomics, NPPSFA, national proje protein structural and
functional analyses; 2.10A {Thermus thermophilus}
Length = 487
Score = 303 bits (778), Expect = 3e-97
Identities = 153/464 (32%), Positives = 222/464 (47%), Gaps = 59/464 (12%)
Query: 1 MNVEGVFFVNDHLEKLM-------LEELRNSCR-PGMVG------------GFLPG---- 36
M V+ VFF + + K + L++L N PG+V GF G
Sbjct: 30 MRVDAVFFASKEILKDLEAENYASLQQLMNVATLPGIVEPALAMPDIHWGYGFPIGGVAA 89
Query: 37 VKQIANVAALPGIVG-------RSVGLP----DVHSVPST--QWLSDNTMRSSNIWKRSP 83
PG VG R + D+ L +R
Sbjct: 90 FDPEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELADALYRLVPSGVGSERRDV 149
Query: 84 LTLGAGNHYAEIQIVD---EIYDKWAASKMGIEDVGQVCV-----MIHSGSRGFGHQVAT 135
+ + + IE G++ + Q+ T
Sbjct: 150 RFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGT 209
Query: 136 --AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAM 193
+GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG GHQV D + + K
Sbjct: 210 LGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQDYVERFLKVA 268
Query: 194 KRDNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPD 247
R IE D+QLA A I S + + + + + L H + +AF K TP
Sbjct: 269 PRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEKVG-FTPR 327
Query: 248 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
D + V+YD++HN AK EEH + + +LVHRKG+TRAF P HP +P +Y+ GQPVL+
Sbjct: 328 DHGLRVLYDLAHNNAKFEEH----RGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQPVLV 383
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRV 367
G MG SYVL GTEK M+ +FGS+CHGAGR +SR ++++ + ++ +L +GI +R
Sbjct: 384 PGDMGRYSYVLAGTEKAMEVSFGSSCHGAGRKMSRHQAKKVARERNLVKELAERGILVRA 443
Query: 368 ASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
A+ V EE PE+YK+V+ VV+ GI KK +LRP+ V+KG
Sbjct: 444 ATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 487
Score = 78.1 bits (192), Expect = 2e-15
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 450 GMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSL 508
G+ L + + LA +++ +P GVGS + + + R+L+E L+ G W +
Sbjct: 110 GVRL-LASHLTLEDLLPRQKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLV 168
Query: 509 REGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVS 548
+ GY + ED E GR+ A+P KVS RA +RG PQ+
Sbjct: 169 KRGYGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIG 208
Score = 51.9 bits (124), Expect = 3e-07
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
Query: 416 ERLAQSMFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFE---RL 471
+ LA +++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E RL
Sbjct: 128 KELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRL 187
Query: 472 AQSMFDHIPVGVGSKGIIPMN----------------ARDLEEALEMGMDWSLREGYIWA 515
+ D + +G + D E AL G L +G +
Sbjct: 188 PWANPDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFG----LFKGQVTV 243
Query: 516 EDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDR 550
G + D + ++ R ++ D+
Sbjct: 244 LIHTGSRGLGHQVCQDYVERFLKVAPRYGIELVDK 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 64/438 (14%), Positives = 122/438 (27%), Gaps = 134/438 (30%)
Query: 195 RDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVI 254
+D + R +K + ++F ++ + + M++
Sbjct: 58 KDAVSGTLRLFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 255 Y-DVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP-VLIGGTMG 312
D +N D + V K + P+ L +L VLI G +
Sbjct: 115 QRDRLYN---------DNQ-----VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VL 159
Query: 313 TC--SYVLTGT---EKGMQETFG--------STCHGAGRALSRAKSRRNLDYQEVLNKLE 359
+ + +Q C+ L + + L YQ N
Sbjct: 160 GSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLYQIDPNWTS 215
Query: 360 ----SQGISIRVASPKLVMEE--APESYKNVTDVVDTCHAVGISK--KTFKL-------- 403
S I +R+ S + + + Y+N V+ V +K F L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSCKILLTT 272
Query: 404 RPVAVIKGIYLNERLAQSMFDHIPVGVG---SKGI----IPMNARDL-EEA-----LEMG 450
R V + S+ DH + + K + + +DL E +
Sbjct: 273 RFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 451 MDW-SLREGYI-W------------------------AEDKEHFERLAQSMFDHIPVGVG 484
+ S+R+G W AE ++ F+RL+ +F P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VF---PPSAH 386
Query: 485 SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGL 544
IP L + IW + + ++N K L
Sbjct: 387 ----IP------TILLSL----------IWFDVIKSDVM--VVVNKL--------HKYSL 416
Query: 545 PQVSDRRGTGSSKYCHGV 562
+++ S+ +
Sbjct: 417 ---VEKQPKESTISIPSI 431
Score = 53.7 bits (128), Expect = 1e-07
Identities = 62/537 (11%), Positives = 140/537 (26%), Gaps = 174/537 (32%)
Query: 8 FVNDHLEKL-MLEELRN---SCRP-------GMVGGFLPGVKQI--ANVAALPGIVGR-- 52
F ++ +L +LR RP G+ G G K +V + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGS--G-KTWVALDVCLSYKVQCKMD 181
Query: 53 ------SVGL---PD----------VHSVPSTQWLSD---NTMRSSNIWKRSPLTLGAGN 90
++ P+ P+ SD N + + L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 91 HYAE-IQIVDEIYDKWAASKMGIEDVGQVC-VMIHSGSRGFGHQVATA--GNHYAEIQIV 146
Y + ++ + + A + ++ C +++ + + QV I +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAF---NLS--CKILLTTRFK----QVTDFLSAATTTHISLD 292
Query: 147 D-----------EIYDKWAASKMGIEDV-GQVCVMIHSGSRGFGHQVATDALVQMEKAMK 194
+ K+ +D+ +V + + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLT---------TNPRR----LSIIAESI 337
Query: 195 RDNIETND--RQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLD-- 250
RD + T D + + C ++ ++ P + +D + F P
Sbjct: 338 RDGLATWDNWKHVNCDKLT-TIIESSLNVLE--PAEYRKM--FDRLS-VF---PPSAHIP 388
Query: 251 MHVIYDVSHNIAKTE-EHMVDGKQKTLLV----------------------------HRK 281
++ + ++ K++ +V+ K LV HR
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 282 -----GSTRAFPPHHPLIPVD----YQLTGQPVLIGGTMGTCSYVLTGTEKG-MQETFGS 331
+ F + P Y G + L E F
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-------------HHLKNIEHPERMTLF-- 493
Query: 332 TCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKN-VTDVVDT 390
LD++ + K+ + + L + + YK + D
Sbjct: 494 -------------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 391 CHAVGISKKTFKLRPVA-VIKGIYLNERLAQS--MFDHIPVGVGSKGIIPMNARDLE 444
+ + F + +I Y + L + M + + I + ++
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTD--LLRIALMAED-------EAIFEEAHKQVQ 588
Score = 43.3 bits (101), Expect = 2e-04
Identities = 54/403 (13%), Positives = 107/403 (26%), Gaps = 133/403 (33%)
Query: 197 NIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYD 256
+ ET + Q I + V DAF + D + D
Sbjct: 8 DFETGEHQYQYKDI--------------------LSVFEDAFVD-------NFDCKDVQD 40
Query: 257 VSHNIAKTEE--HMVDGKQK---------TLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV 305
+ +I EE H++ K TLL ++ + F ++ ++Y+ P+
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFLMSPI 98
Query: 306 LIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISI 365
+ R S Y E ++L +
Sbjct: 99 --------------------------------KTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 366 R---VASPKLVME--EA-----PESY----------KNVTDVVDTCHAVGI-SKKTFKL- 403
V+ + ++ +A P K +D C + + K FK+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIF 185
Query: 404 --------RPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS- 454
P V++ L + L Q + S I + ++ L +
Sbjct: 186 WLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKP 242
Query: 455 -------LREGYIWAEDKEHFERLAQSMFDH---IPVGVGSKGIIPMNARDLEEALEMGM 504
L + + + + F+ I + K + + + +
Sbjct: 243 YENCLLVLLN--VQ--NAKAWN-----AFNLSCKILLTTRFKQVT--DFLSAATTTHISL 291
Query: 505 DWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQV 547
D E K +Y L+ P + P+
Sbjct: 292 D-HHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLT-TNPRR 329
Score = 34.8 bits (79), Expect = 0.086
Identities = 46/342 (13%), Positives = 96/342 (28%), Gaps = 123/342 (35%)
Query: 2 NVEGVFFVNDHLEKLMLEELRN------SCRPGMVGGFLPGVKQIANVAALP-GIVGRSV 54
++ H L +E+++ CRP LP +++ I+ S+
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LP--REVLTTNPRRLSIIAESI 337
Query: 55 GLPDVHSVPST--QWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGI 112
+T W N + + I + S L AE + +++D+ + +
Sbjct: 338 -----RDGLATWDNWKHVNCDKLTTIIESSLNVLEP----AEYR---KMFDR-----LSV 380
Query: 113 --EDV---GQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC 167
+ +I + +V++++ K +
Sbjct: 381 FPPSAHIPTILLSLIWFDV-----------IKSDVMVVVNKLHKYSLVEK----QPKEST 425
Query: 168 VMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINS-NKNKAFAKQFNTTP 226
+ I S + +E +K +N R + ++ N K F + P
Sbjct: 426 ISIPS--------------IYLELKVKLENEYALHRSI----VDHYNIPKTF-DSDDLIP 466
Query: 227 DDLDM----HVIY-----------DAFAKQF------------------------NT--- 244
LD H+ + F F NT
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 245 --------TPDDLDMH-VIYDVSHNIAKTEEHMVDGKQKTLL 277
+D ++ + + K EE+++ K LL
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 3e-08
Identities = 94/585 (16%), Positives = 169/585 (28%), Gaps = 214/585 (36%)
Query: 58 DVHSVPST-QWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVG 116
D+H++ + +D T+ + + N+ + +DK + S +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIK--------NYITARIMAKRPFDKKSNSAL------ 145
Query: 117 QVCVMIHSGSRG-------FGHQVATAGN--HY-AEIQIVDEIYDKWAASKMGIEDVGQV 166
+ G FG Q GN Y E++ ++Y
Sbjct: 146 -----FRAVGEGNAQLVAIFGGQ----GNTDDYFEELR---DLYQ--------------- 178
Query: 167 CVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLA-CARINSNKNKAFAKQFN-- 223
+ D I+ + L+ R + K F + N
Sbjct: 179 ----------------------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 224 -------TTPDD--LD-----MHVI-------YDAFAKQFNTTPDDLDMHV--IYDVSHN 260
TPD L +I Y AK TP +L ++ S
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 261 I--------AKTEEHMVDGKQK--TLLVH---RKGSTRAFPPHHPLIPVDYQLTGQPVLI 307
+ + E +K T+L R A+ P+ L P + + +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAY-PNTSLPPSILEDS-----L 328
Query: 308 GGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKL--ESQGISI 365
G S +L + L++ + + ++ N + + I
Sbjct: 329 ENNEGVPSPML-------------SISN----LTQEQVQDYVNK---TNSHLPAGKQVEI 368
Query: 366 RVA-SPK-LVMEEAPES-YKNVTDVVDTCHAVGI--SKKTFKLRPVAVIKGIYLNERLAQ 420
+ K LV+ P+S Y + G+ S+ F R + +L
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFSNRFL------ 421
Query: 421 SMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIP 480
PV P ++ L A ++ ++ + A+ + IP
Sbjct: 422 ------PVAS------PFHSHLLVPASDLINKDLVKNNVSFN---------AKDI--QIP 458
Query: 481 V---GVGSKGIIPMNARDLEEAL-EMGMDWSLREGYIWAE----DKEHCEEYGRMLNADP 532
V GS + R L ++ E +D +R W H ++G P
Sbjct: 459 VYDTFDGS------DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG------P 506
Query: 533 SKVSMRAKKRGLPQVSDR--RGTGSSKYCHGVGSIPA-RLECRPE 574
S GL ++ R GT GV I A L+ P+
Sbjct: 507 GGAS------GLGVLTHRNKDGT-------GVRVIVAGTLDINPD 538
Score = 42.7 bits (100), Expect = 4e-04
Identities = 41/248 (16%), Positives = 78/248 (31%), Gaps = 79/248 (31%)
Query: 361 QGISIRVASPKLVME--EAPESYKNVTDVVD--TCHAVGIS-KKTFKLRPVAVI------ 409
QG + M+ + ++ ++V + D G S PV +
Sbjct: 1624 QGS----QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 410 KGIYLNERLAQSMFDHIPVG-VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHF 468
KG + E + +F+ I G + ++ I ++ E Y + +K
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFK----EINEHST---------SYTFRSEKG-- 1724
Query: 469 ERL-----AQ--------SMFDHIPVGVGSKGIIPMNAR-------------------DL 496
L Q + F+ + SKG+IP +A +
Sbjct: 1725 -LLSATQFTQPALTLMEKAAFEDL----KSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 497 EEALEMGMDWSLRE-GYIWAE----DKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRR 551
E +E+ + G D+ YG M+ +P +V+ + L V +R
Sbjct: 1780 ESLVEV-----VFYRGMTMQVAVPRDELGRSNYG-MIAINPGRVAASFSQEALQYVVERV 1833
Query: 552 GTGSSKYC 559
G +
Sbjct: 1834 GKRTGWLV 1841
Score = 41.6 bits (97), Expect = 8e-04
Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 53/193 (27%)
Query: 9 VNDHL---EKLMLEELRNSCRPGMVGGF---LPGVK-QIANVAALPG------------I 49
N HL +++ + L N + +V G L G+ + A G +
Sbjct: 356 TNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 50 VGRSVGLPDV----HS---VPSTQWLSDNTMRSSNIWKRSPL------TLGAGN---HYA 93
+ LP V HS VP++ ++ + ++++ + + T +
Sbjct: 415 KFSNRFLP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 94 EI--QIVDEIYDK---W-AASKMG---IEDVG-----QVCVMIHSGSRGFGHQVATAGNH 139
I +IVD I W ++ I D G + V+ H G G +V AG
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT- 532
Query: 140 YAEIQIVDEIYDK 152
+I D+ K
Sbjct: 533 -LDINPDDDYGFK 544
Score = 33.5 bits (76), Expect = 0.26
Identities = 28/141 (19%), Positives = 40/141 (28%), Gaps = 51/141 (36%)
Query: 88 AGNH----YAEIQIVDEIYDKWA----ASKMGIEDVGQVCVMIHSGSRGFGHQVA----- 134
AG H YA A A M IE + +V V RG QVA
Sbjct: 1760 AG-HSLGEYA------------ALASLADVMSIESLVEV-VFY----RGMTMQVAVPRDE 1801
Query: 135 TAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF----------------G 178
++Y I I A+ E + V + + G
Sbjct: 1802 LGRSNYGMIAINPGR----VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 179 HQVATDALVQMEKAMKRDNIE 199
A D + + +K I+
Sbjct: 1858 DLRALDTVTNVLNFIKLQKID 1878
Score = 32.3 bits (73), Expect = 0.59
Identities = 57/323 (17%), Positives = 99/323 (30%), Gaps = 100/323 (30%)
Query: 92 YAEIQIVDEIY---DKWAASKMG--IEDVGQ---VCVMIHSGSRGFGHQVATAGNHYAEI 143
Y + +++ D G I D+ V + IH G G ++ +Y+ +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-GKRIR---ENYSAM 1691
Query: 144 QIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV----ATD----ALVQMEKAMKR 195
I + I D ++ +++ + HS S F + AT AL MEKA
Sbjct: 1692 -IFETIVDGKLKTEKIFKEINE-----HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVI--YDAFAKQFNTTPDDLDMHV 253
D ++ ++ + FA H + Y A A
Sbjct: 1746 D-LK--------SKGLIPADATFAG-----------HSLGEYAALA-------------- 1771
Query: 254 IYDVSHNIAKTE----EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGG 309
+ + E +V+ +V +G T +P D +I
Sbjct: 1772 --------SLADVMSIESLVE------VVFYRGMTMQV-----AVPRDELGRSNYGMIAI 1812
Query: 310 TMGTCSYVLTGTEKGMQETFGSTCHGAGRALS------------RAKSRRNLDY-QEVLN 356
G + +++ +Q G + A R LD VLN
Sbjct: 1813 NPGRV--AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
Query: 357 KLESQGISIRVASPKLVMEEAPE 379
++ Q I I L +EE
Sbjct: 1871 FIKLQKIDIIELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.017
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 8/27 (29%)
Query: 352 QEVLNKLESQGISIRVASPKLVMEEAP 378
Q L KL++ S+++ + + AP
Sbjct: 20 QA-LKKLQA---SLKLYAD----DSAP 38
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop,
transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces
cerevisiae} PDB: 3bjy_A* 3osp_A*
Length = 434
Score = 29.2 bits (66), Expect = 3.8
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 291 HPLIPVDYQLTGQPVLIGGTMG-----TCSYV 317
P+++ +C+YV
Sbjct: 71 RSSSFSACDFKRDPIVVCHGTKNSDIASCNYV 102
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 28.6 bits (65), Expect = 4.0
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINS 212
V Q+ ++ +RDN + + +NS
Sbjct: 130 VDVSPQTQLARSAQRDNN---NFEQIQRIMNS 158
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 28.3 bits (64), Expect = 5.7
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINS 212
V Q+++ M+RD++ R+ + +
Sbjct: 132 VDVSPETQLKRTMQRDDV---TREHVEQILAA 160
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 28.7 bits (64), Expect = 5.7
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 10/108 (9%)
Query: 168 VMIH-SGSRG-FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTT 225
+ + G R G D+L + + K+ IE R + A
Sbjct: 167 IKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENR 226
Query: 226 PDDLDMHV-----IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
+L+ F ++F + V + E+
Sbjct: 227 VLELNKKQESEDTAKAGFWEEFESLQ---KQEVKNLHQRLEGQRPENK 271
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 28.3 bits (63), Expect = 6.3
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 9/63 (14%)
Query: 66 QWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 125
QW D+ + YA D + A+ + V M+
Sbjct: 18 QWAYDHKYAEESKI---------AYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHY 68
Query: 126 SRG 128
R
Sbjct: 69 LRA 71
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 28.4 bits (63), Expect = 8.1
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 10/108 (9%)
Query: 168 VMIH-SGSRG-FGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTT 225
+ + G R G D+L + + K+ IE R + A
Sbjct: 167 IKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENR 226
Query: 226 PDDLDMH-----VIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 268
+L+ F ++F + V + E+
Sbjct: 227 VLELNKKQESEDTAKAGFWEEFESLQ---KQEVKNLHQRLEGQRPENK 271
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 28.0 bits (63), Expect = 8.3
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINS 212
V + + ++RD + A +R+ S
Sbjct: 206 VVIPETEAVRRIVERDGL---SEAAAQSRLQS 234
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus}
SCOP: c.37.1.1
Length = 203
Score = 27.5 bits (62), Expect = 9.2
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINS 212
VA ++ + M R + R+ AR +
Sbjct: 131 VAAPLEERVRRVMARSGL---SREEVLARERA 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,278,548
Number of extensions: 589273
Number of successful extensions: 1638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1616
Number of HSP's successfully gapped: 31
Length of query: 574
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 475
Effective length of database: 3,937,614
Effective search space: 1870366650
Effective search space used: 1870366650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)