RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10975
(574 letters)
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 480
Score = 302 bits (774), Expect = 4e-97
Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG GHQVA+D L ME+A+++
Sbjct: 199 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 257
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
I DR+L S + + + A F + H + ++F + F P+ D
Sbjct: 258 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 317
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
L M ++YDV+HNI K EEH VDGK+ ++VHRKG+TRAFPP H +P Y+ GQPVLI
Sbjct: 318 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 377
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
G+MGT SY+L GTE M+ETFGSTCHGAGR LSR + R + +L ++GI +R A
Sbjct: 378 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 437
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
S ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 438 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 480
Score = 82.4 bits (203), Expect = 3e-17
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 465 KEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY 524
+ ++L ++F ++P GVGS+G I ++ +++ L G W++ GY W D E EE
Sbjct: 112 RPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEG 171
Query: 525 GRMLNADPSKVSMRAKKRGLPQVSD 549
GRM ADP VS RAK+RG PQ+
Sbjct: 172 GRMEGADPEAVSQRAKQRGAPQLGS 196
Score = 51.2 bits (122), Expect = 2e-07
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVH 60
M V G + ++ L + M + ++Q NVA LPGI S+ +PD H
Sbjct: 21 MRVPGRVYADEVLLEKMKND--------------RTLEQATNVAMLPGIYKYSIVMPDGH 66
Query: 61 S 61
Sbjct: 67 Q 67
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase
(ROO), C-terminal domain {Desulfovibrio gigas [TaxId:
879]}
Length = 152
Score = 30.4 bits (68), Expect = 0.32
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 8/78 (10%)
Query: 458 GYIWAEDKEHFERLAQSMFDHIPVGV-GSKGIIPMNARDLEEAL-EMGMDWSLREGYIW- 514
I + + + G GS G + + L E L MG D
Sbjct: 66 NGILPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDM-PATPVKVK 124
Query: 515 ----AEDKEHCEEYGRML 528
D E + + +
Sbjct: 125 NVPTHADYEQLKTMAQTI 142
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 149
Score = 28.6 bits (63), Expect = 1.3
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 453 WSLREGYIWAEDKEHFERLAQSMFDHIPVGV-GSKGIIPMNARDLEEALE-MGMDWSLRE 510
I + L + G+ G + LEE L+ ++
Sbjct: 61 SPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEP 120
Query: 511 GYIW-----AEDKEHCEEYGRML 528
G ED + C E GR +
Sbjct: 121 GPTVQWVPRGEDLQRCYELGRKI 143
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 27.3 bits (60), Expect = 2.2
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Query: 430 VGSKGIIPMNARDLEEALEMGMDW--SLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKG 487
+ +KG +P++ + + Y + E ++ F+RLA++ + V G
Sbjct: 1 LHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVG 60
Query: 488 IIPMNARDLEEALEMGMDWSLRE----GYIWAEDKEHCEEYGRMLNAD 531
I L L D E+ Y +
Sbjct: 61 ISDYGD-KLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVG 107
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos
biflorus), different isoforms [TaxId: 3840]}
Length = 253
Score = 28.2 bits (62), Expect = 2.4
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 210 INSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNI 261
+NS K+ A + ++ + Y+A + Y VS +
Sbjct: 143 VNSIKSIRTASWGLANGQNAEILITYNAATSLLVASLVHPSRRTSYIVSERV 194
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus
tetragonolobus), acidic lectin [TaxId: 3891]}
Length = 234
Score = 28.1 bits (62), Expect = 2.6
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 210 INSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNI 261
+NS + ++ + YD+ K N + +Y +S+ +
Sbjct: 142 VNSIVSSKTLHFQLENGGVANVVIKYDSPTKILNVVLAFHSVGTVYTLSNIV 193
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 104
Score = 26.7 bits (59), Expect = 3.0
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 185 ALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVI------YDAF 238
L +EKA +D+I+ ++ KQF + + I +AF
Sbjct: 35 TLDHVEKAYLKDSIDDTQYTNTVDKL--------LKQFKVYLNSQNKEEINKHFQSIEAF 86
Query: 239 AKQFN 243
A +N
Sbjct: 87 ADTYN 91
>d1wiwa_ c.80.1.1 (A:) Glucose-6-phosphate isomerase-like protein
TTHA1346 {Thermus thermophilus [TaxId: 274]}
Length = 284
Score = 27.9 bits (62), Expect = 3.4
Identities = 7/58 (12%), Positives = 19/58 (32%)
Query: 430 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKG 487
+ + L E ++ R G ++ + LA ++ + +P+
Sbjct: 115 LRFLLLATGREEVLRSVDEALLEERRRLGPEVPVEENPAKFLAYTLLERLPLFYSPLF 172
>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 293
Score = 27.5 bits (61), Expect = 4.8
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 438 MNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIP 490
+ L +D + E I +D+E R H G+ P
Sbjct: 68 LQETSLAGVANQLLDRFIFEDQIRPQDREELLRALLLKHSHAGELEALGGVKP 120
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 27.3 bits (60), Expect = 4.8
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 435 IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNAR 494
I+P+ A +A+ +G AE + + + + VG +G N
Sbjct: 30 ILPVGAESFRDAMRLG-----------AEVYHTLKGVIKDKYGKDATNVGDEGGFAPNIL 78
Query: 495 DLEEALEMGMD 505
+ EALE+ +
Sbjct: 79 ENSEALELVKE 89
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 166
Score = 26.3 bits (57), Expect = 6.7
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 3/84 (3%)
Query: 164 GQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN--KAFAKQ 221
+ F A D Q + ++ ++ A + S + F
Sbjct: 80 SPTVFNAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPDRVVATLKSMPEYIERFEDA 139
Query: 222 FNTTPDDLDMHVIYDAFAKQFNTT 245
F + + + A + T
Sbjct: 140 FPGQENPVTFDNMAVAIE-AYEAT 162
>g1qmo.1 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolichos
lablab), Fril [TaxId: 35936]}
Length = 230
Score = 26.6 bits (58), Expect = 6.8
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 210 INSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNI 261
+NS ++K AK H+ Y++ +K+ + T +S++I
Sbjct: 141 VNSIRSKVTAKWDWQNGKIATAHISYNSVSKRLSVTSYYAGSK-PATLSYDI 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,240,526
Number of extensions: 108453
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 17
Length of query: 574
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 484
Effective length of database: 1,171,896
Effective search space: 567197664
Effective search space used: 567197664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)