BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1098
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GO6|A Chain A, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|C Chain C, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 45
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 354 EVEKPGPPGRIQLVRAATNNLEICWPGHPIADSYAI 389
E EKP PP R+QLVRA TN+LE+ W ADSY +
Sbjct: 3 ETEKPPPPARVQLVRANTNSLEVSWGAVATADSYLL 38
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 25/158 (15%)
Query: 12 YRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFG--GGNEGIVEELHVFNTATNQWFIPTL 69
++W D P P +GH ++ DL+ V G G + + ++ V++ +W
Sbjct: 127 FKWGESD----PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----- 177
Query: 70 KGDIPPGCAA---YGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRF 125
++ P A +G V + R+++ G+ + G SS ++Y + +KW F
Sbjct: 178 -KELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKW---------APF 227
Query: 126 GSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPS 163
+ P R S + +Y GG A + + P+
Sbjct: 228 EAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPT 265
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 26/156 (16%)
Query: 25 PRPRHGHRAVAIKDLMLVFGG--GNEGIVEELHVFNTATNQWFIPTLKGDIPPGC---AA 79
P +GH ++ ++ GG ++ + ++N W D+ P +
Sbjct: 146 PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW------KDLAPMKTPRSM 199
Query: 80 YGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFT 138
+G+ + +++I GG+ E G +S + ++L+ +KWE P R S
Sbjct: 200 FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE---------VMTEFPQERSSISLV 250
Query: 139 LIGNKVYLFGGLANSGGDETKPTPS-----YKYLDD 169
+ +Y GG A + + P+ +KY DD
Sbjct: 251 SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD 286
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 231 DINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
DI + KP L P +L T+C M GW + + SN+L
Sbjct: 84 DIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD---------SNKL 134
Query: 291 ACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKD- 349
CL++P +++ D + G + + Y+ G+D + V C
Sbjct: 135 QCLNIPILSYSDCN---------NSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE 185
Query: 350 -----LWYLEVEKPGPPG 362
W +PG PG
Sbjct: 186 LQGVVSWGYGCAEPGNPG 203
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 231 DINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
DI + KP L P +L T+C M GW + + SN+L
Sbjct: 104 DIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD---------SNKL 154
Query: 291 ACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKD- 349
CL++P +++ D + G + + Y+ G+D + V C
Sbjct: 155 QCLNIPILSYSDCN---------NSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE 205
Query: 350 -----LWYLEVEKPGPPG 362
W +PG PG
Sbjct: 206 LQGVVSWGYGCAEPGNPG 223
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 24/138 (17%)
Query: 231 DINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
DI + KP L P +L T+C M GW + + SN+L
Sbjct: 84 DIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD---------SNKL 134
Query: 291 ACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKD- 349
CL++P +++ D ++ P G + + Y+ G+D + V C
Sbjct: 135 QCLNIPILSYSDC-----NNSYP----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE 185
Query: 350 -----LWYLEVEKPGPPG 362
W +PG PG
Sbjct: 186 LQGVVSWGYGCAEPGNPG 203
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 231 DINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
DI + KP L P +L T+C M GW + + SN+L
Sbjct: 99 DIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD---------SNKL 149
Query: 291 ACLHLPEMTWED 302
CL++P +++ D
Sbjct: 150 QCLNIPILSYSD 161
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 24/138 (17%)
Query: 231 DINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
DI + KP L P +L T+C M GW + + S++L
Sbjct: 84 DIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD---------SDKL 134
Query: 291 ACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKD- 349
CL++P +++ D +D P G + + Y+ G+D + V C
Sbjct: 135 QCLNIPILSYSDC-----NDSYP----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE 185
Query: 350 -----LWYLEVEKPGPPG 362
W +PG PG
Sbjct: 186 LQGVVSWGYGCAEPGNPG 203
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 79 AYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSF 137
A+G+VV +R L + SDL+ L E LK P RFG P +LG F
Sbjct: 363 AHGVVVPRSRFLPVKTCSDLLLVKSDLFRL-----EHGSLKLDPSRFGPNPLIKLGSHF 416
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 7 DNCPVYRWRRIDDPAG-------PQPRPRHGHRAVAIKDLMLVFGGGNE-GIVEELHVFN 58
++C VY DPA P R H V +KD + GG N G ++ + ++
Sbjct: 169 NSCEVY------DPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYD 222
Query: 59 TATNQWFI--PTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDL-YELQASKW 113
N+W + P + CAA G + V + G G+ L Y + KW
Sbjct: 223 IKLNEWKMVSPMPWKGVTVKCAAVGSI-----VYVLAGFQGVGRLGHILEYNTETDKW 275
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 24/138 (17%)
Query: 231 DINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
DI + KP L P +L ++C M GW + + N+L
Sbjct: 84 DIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGNTMSSTAD---------KNKL 134
Query: 291 ACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKD- 349
CL++P +++ D ++ P G + + Y+ G+D + V C
Sbjct: 135 QCLNIPILSYSDC-----NNSYP----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE 185
Query: 350 -----LWYLEVEKPGPPG 362
W +PG PG
Sbjct: 186 LQGVVSWGYGCAEPGNPG 203
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 231 DINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
DI + KP L P +L ++C M GW + + N+L
Sbjct: 84 DIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGNTMSSTAD---------KNKL 134
Query: 291 ACLHLPEMTWEDLS 304
CL++P +++ D +
Sbjct: 135 QCLNIPILSYSDCN 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,555,109
Number of Sequences: 62578
Number of extensions: 680711
Number of successful extensions: 1237
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 16
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)