Query psy1098
Match_columns 390
No_of_seqs 199 out of 2489
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 23:20:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4152|consensus 100.0 2E-61 4.4E-66 430.7 26.7 376 12-389 17-396 (830)
2 PLN02193 nitrile-specifier pro 100.0 3.6E-45 7.9E-50 349.9 35.5 312 11-357 150-469 (470)
3 PLN02153 epithiospecifier prot 100.0 8.3E-44 1.8E-48 329.0 35.1 321 9-356 4-339 (341)
4 KOG4441|consensus 100.0 1.9E-41 4.1E-46 328.0 28.1 295 13-363 261-561 (571)
5 KOG4693|consensus 100.0 2.6E-41 5.7E-46 279.7 22.0 275 27-336 13-313 (392)
6 KOG4441|consensus 100.0 7.1E-40 1.5E-44 317.0 26.7 265 2-324 301-568 (571)
7 PLN02193 nitrile-specifier pro 100.0 1.3E-38 2.9E-43 304.7 33.9 289 28-356 111-410 (470)
8 PHA02713 hypothetical protein; 100.0 6.7E-39 1.5E-43 311.7 28.2 265 39-357 259-543 (557)
9 PHA02713 hypothetical protein; 100.0 6E-39 1.3E-43 312.0 25.2 258 3-305 273-542 (557)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 1.7E-37 3.7E-42 287.9 29.9 294 23-354 3-344 (346)
11 TIGR03548 mutarot_permut cycli 100.0 1E-36 2.2E-41 279.8 29.7 272 26-336 2-314 (323)
12 KOG4693|consensus 100.0 1.9E-37 4.1E-42 256.8 20.7 254 4-271 46-314 (392)
13 PRK14131 N-acetylneuraminic ac 100.0 4.3E-36 9.4E-41 280.5 28.7 302 13-356 18-368 (376)
14 PLN02153 epithiospecifier prot 100.0 1.1E-35 2.3E-40 274.9 30.0 245 60-335 5-261 (341)
15 PHA03098 kelch-like protein; P 100.0 4E-35 8.6E-40 287.5 28.1 247 6-305 268-520 (534)
16 KOG0379|consensus 100.0 6.8E-35 1.5E-39 278.3 28.7 280 20-334 53-341 (482)
17 PHA03098 kelch-like protein; P 100.0 4.4E-34 9.5E-39 280.1 28.5 273 38-363 251-527 (534)
18 KOG1230|consensus 100.0 3.2E-33 6.9E-38 244.7 20.9 260 23-306 62-350 (521)
19 TIGR03548 mutarot_permut cycli 100.0 2.5E-32 5.4E-37 250.7 24.1 226 12-270 51-314 (323)
20 TIGR03547 muta_rot_YjhT mutatr 100.0 3.6E-32 7.8E-37 252.3 25.3 233 4-270 31-332 (346)
21 PHA02790 Kelch-like protein; P 100.0 1.5E-31 3.2E-36 256.9 27.8 211 33-304 267-478 (480)
22 KOG0379|consensus 100.0 4.9E-32 1.1E-36 258.7 24.0 231 70-337 54-287 (482)
23 PRK14131 N-acetylneuraminic ac 100.0 1.2E-31 2.6E-36 250.6 25.7 252 5-302 53-374 (376)
24 PHA02790 Kelch-like protein; P 100.0 3.6E-30 7.9E-35 247.2 25.7 208 82-353 267-476 (480)
25 KOG1230|consensus 100.0 1.6E-30 3.4E-35 227.9 19.8 265 72-362 62-346 (521)
26 KOG4152|consensus 100.0 1.5E-28 3.3E-33 220.6 18.1 234 61-335 16-274 (830)
27 COG3055 Uncharacterized protei 99.8 1.3E-18 2.8E-23 151.4 22.2 283 23-339 32-363 (381)
28 COG3055 Uncharacterized protei 99.8 4.1E-17 8.9E-22 142.1 20.3 229 10-271 68-361 (381)
29 KOG2437|consensus 99.8 1.8E-19 4E-24 162.2 4.4 327 10-360 237-616 (723)
30 KOG2437|consensus 99.5 5.9E-15 1.3E-19 133.4 6.0 198 112-336 238-458 (723)
31 PF03089 RAG2: Recombination a 99.3 2.1E-10 4.6E-15 97.3 19.5 222 88-330 40-280 (337)
32 PF13964 Kelch_6: Kelch motif 99.2 8.9E-11 1.9E-15 75.7 5.8 48 27-77 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 99.1 1.1E-10 2.5E-15 75.2 5.6 47 76-122 1-47 (50)
34 PF01344 Kelch_1: Kelch motif; 99.0 1E-09 2.2E-14 69.7 5.5 46 76-121 1-46 (47)
35 PF13418 Kelch_4: Galactose ox 98.9 3E-09 6.6E-14 68.2 5.6 46 76-121 1-47 (49)
36 PLN02772 guanylate kinase 98.9 7.3E-09 1.6E-13 94.5 9.6 100 244-367 19-119 (398)
37 PF07646 Kelch_2: Kelch motif; 98.9 6.3E-09 1.4E-13 66.6 5.7 46 76-121 1-48 (49)
38 PF13415 Kelch_3: Galactose ox 98.9 6.9E-09 1.5E-13 66.4 5.8 48 86-140 1-49 (49)
39 PLN02772 guanylate kinase 98.8 2E-08 4.3E-13 91.7 10.6 90 21-113 18-110 (398)
40 PF13415 Kelch_3: Galactose ox 98.8 8.2E-09 1.8E-13 66.0 5.7 46 37-85 1-49 (49)
41 PF01344 Kelch_1: Kelch motif; 98.8 5.4E-09 1.2E-13 66.4 4.6 42 27-68 1-44 (47)
42 PF13418 Kelch_4: Galactose ox 98.8 9.8E-09 2.1E-13 65.8 5.1 45 249-305 1-46 (49)
43 PF07646 Kelch_2: Kelch motif; 98.8 2.1E-08 4.5E-13 64.2 5.7 42 27-68 1-46 (49)
44 PF13854 Kelch_5: Kelch motif 98.7 7.1E-08 1.5E-12 59.3 5.4 40 73-112 1-41 (42)
45 PF13854 Kelch_5: Kelch motif 98.6 1.3E-07 2.7E-12 58.2 5.2 38 24-61 1-41 (42)
46 smart00612 Kelch Kelch domain. 98.5 1.4E-07 3.1E-12 59.7 4.3 47 261-326 1-47 (47)
47 PF07250 Glyoxal_oxid_N: Glyox 98.5 1.8E-05 3.9E-10 68.3 17.6 148 53-239 47-204 (243)
48 PF03089 RAG2: Recombination a 98.5 3.9E-06 8.5E-11 71.8 13.0 165 192-365 19-199 (337)
49 smart00612 Kelch Kelch domain. 98.4 5.2E-07 1.1E-11 57.0 5.0 46 212-260 1-47 (47)
50 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00035 7.6E-09 60.5 16.6 151 105-305 48-207 (243)
51 TIGR01640 F_box_assoc_1 F-box 98.0 0.0023 5E-08 55.7 20.1 183 52-267 14-215 (230)
52 PRK11138 outer membrane biogen 97.9 0.014 3.1E-07 55.3 24.9 237 4-332 132-383 (394)
53 TIGR01640 F_box_assoc_1 F-box 97.7 0.01 2.2E-07 51.7 20.2 202 6-235 18-230 (230)
54 PRK11138 outer membrane biogen 97.7 0.052 1.1E-06 51.4 27.0 216 31-332 63-301 (394)
55 TIGR03300 assembly_YfgL outer 97.4 0.1 2.2E-06 49.1 23.7 216 34-332 142-368 (377)
56 TIGR03300 assembly_YfgL outer 97.3 0.17 3.8E-06 47.5 24.9 214 4-302 77-305 (377)
57 PF13360 PQQ_2: PQQ-like domai 97.0 0.19 4.1E-06 43.6 22.7 216 4-301 5-237 (238)
58 KOG2055|consensus 96.7 0.21 4.5E-06 46.4 17.0 180 10-236 196-377 (514)
59 PF13360 PQQ_2: PQQ-like domai 96.4 0.58 1.3E-05 40.5 24.8 179 52-303 3-200 (238)
60 PF07893 DUF1668: Protein of u 96.0 0.58 1.3E-05 43.3 16.4 121 136-305 70-216 (342)
61 PF02191 OLF: Olfactomedin-lik 95.9 1.2 2.5E-05 39.2 16.9 194 37-266 30-237 (250)
62 KOG2055|consensus 95.0 0.56 1.2E-05 43.6 12.1 98 210-335 268-366 (514)
63 PF12768 Rax2: Cortical protei 94.6 2.1 4.5E-05 38.3 14.7 112 102-241 15-129 (281)
64 PF07893 DUF1668: Protein of u 94.6 1.8 4E-05 40.0 14.9 117 36-186 75-214 (342)
65 PF12768 Rax2: Cortical protei 94.2 1.8 3.9E-05 38.7 13.5 95 50-150 14-110 (281)
66 cd00094 HX Hemopexin-like repe 94.1 3.1 6.7E-05 35.0 15.9 154 32-236 11-178 (194)
67 PRK13684 Ycf48-like protein; P 93.7 5.6 0.00012 36.7 22.2 115 181-334 204-322 (334)
68 cd00216 PQQ_DH Dehydrogenases 93.5 8.1 0.00017 37.8 24.5 80 225-331 366-454 (488)
69 PF08268 FBA_3: F-box associat 93.4 1.1 2.3E-05 34.9 9.6 87 34-120 2-89 (129)
70 PF08450 SGL: SMP-30/Gluconola 93.1 5.6 0.00012 34.7 19.0 205 37-304 11-221 (246)
71 PF08450 SGL: SMP-30/Gluconola 93.0 5.7 0.00012 34.7 15.8 165 37-240 51-220 (246)
72 PF14870 PSII_BNR: Photosynthe 92.8 7.2 0.00016 35.3 20.5 238 12-334 47-295 (302)
73 smart00284 OLF Olfactomedin-li 91.0 10 0.00022 33.3 18.1 192 38-266 35-242 (255)
74 cd00094 HX Hemopexin-like repe 90.8 8.9 0.00019 32.2 16.0 64 210-299 110-178 (194)
75 PF10282 Lactonase: Lactonase, 90.7 14 0.0003 34.2 19.9 83 197-305 145-233 (345)
76 PF12217 End_beta_propel: Cata 90.6 11 0.00024 32.8 14.2 289 33-337 21-336 (367)
77 PLN00033 photosystem II stabil 90.3 17 0.00036 34.5 24.3 92 12-118 120-214 (398)
78 PRK13684 Ycf48-like protein; P 90.3 15 0.00033 33.9 19.5 198 60-334 33-234 (334)
79 PF14870 PSII_BNR: Photosynthe 89.8 15 0.00032 33.3 22.4 263 10-362 4-276 (302)
80 cd00216 PQQ_DH Dehydrogenases 89.1 24 0.00051 34.6 23.4 131 30-185 54-191 (488)
81 KOG0649|consensus 88.9 15 0.00031 31.8 12.8 135 83-266 123-263 (325)
82 PF02191 OLF: Olfactomedin-lik 88.8 16 0.00035 32.1 14.6 161 129-332 66-237 (250)
83 PF05096 Glu_cyclase_2: Glutam 88.5 3.8 8.2E-05 36.0 8.8 95 210-335 55-149 (264)
84 TIGR03866 PQQ_ABC_repeats PQQ- 88.4 17 0.00038 32.1 24.2 65 39-116 2-66 (300)
85 KOG0649|consensus 86.0 22 0.00048 30.8 17.1 139 112-303 98-242 (325)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.9 38 0.00083 33.5 23.3 126 31-185 63-197 (527)
87 PF08268 FBA_3: F-box associat 85.8 13 0.00028 28.8 9.9 84 210-305 5-89 (129)
88 COG4257 Vgb Streptogramin lyas 85.3 26 0.00057 31.0 19.4 189 53-305 125-314 (353)
89 cd00200 WD40 WD40 domain, foun 84.5 25 0.00054 30.1 21.3 24 210-237 188-211 (289)
90 PLN00033 photosystem II stabil 83.3 42 0.00092 31.8 20.2 137 61-240 74-214 (398)
91 COG4946 Uncharacterized protei 82.8 45 0.00099 31.8 17.1 63 2-70 59-125 (668)
92 PF05096 Glu_cyclase_2: Glutam 81.6 32 0.00069 30.4 11.3 107 140-299 54-160 (264)
93 COG4946 Uncharacterized protei 81.6 42 0.00091 32.1 12.4 70 210-304 370-439 (668)
94 COG1520 FOG: WD40-like repeat 81.3 47 0.001 31.0 20.7 155 34-239 65-225 (370)
95 TIGR03866 PQQ_ABC_repeats PQQ- 81.2 38 0.00083 29.8 25.1 64 38-114 43-106 (300)
96 KOG0281|consensus 81.1 28 0.0006 31.8 10.7 83 225-338 340-422 (499)
97 smart00284 OLF Olfactomedin-li 81.0 38 0.00083 29.8 16.4 162 128-331 70-241 (255)
98 PRK04792 tolB translocation pr 80.1 59 0.0013 31.4 23.3 150 103-305 242-391 (448)
99 cd00200 WD40 WD40 domain, foun 79.8 38 0.00082 29.0 22.8 62 38-113 21-83 (289)
100 PRK04922 tolB translocation pr 79.4 61 0.0013 31.1 21.3 149 51-241 227-376 (433)
101 KOG0310|consensus 78.5 28 0.0006 33.1 10.3 110 140-299 78-187 (487)
102 KOG0286|consensus 77.7 52 0.0011 29.4 18.2 96 210-337 198-296 (343)
103 PTZ00421 coronin; Provisional 77.7 75 0.0016 31.2 19.5 25 211-235 223-247 (493)
104 PF03178 CPSF_A: CPSF A subuni 76.9 43 0.00093 30.6 11.5 124 168-334 62-191 (321)
105 TIGR02800 propeller_TolB tol-p 76.1 71 0.0015 30.2 20.4 149 52-241 214-362 (417)
106 TIGR02800 propeller_TolB tol-p 75.6 74 0.0016 30.1 22.1 74 210-305 289-363 (417)
107 COG1520 FOG: WD40-like repeat 73.4 80 0.0017 29.5 16.3 139 4-185 80-225 (370)
108 COG4880 Secreted protein conta 72.9 60 0.0013 30.7 10.8 60 98-179 401-460 (603)
109 KOG1036|consensus 71.9 75 0.0016 28.5 13.5 91 211-330 106-203 (323)
110 PF06433 Me-amine-dh_H: Methyl 71.9 83 0.0018 29.0 17.6 74 38-116 3-80 (342)
111 KOG0310|consensus 71.3 98 0.0021 29.6 17.9 178 83-337 119-302 (487)
112 PRK00178 tolB translocation pr 70.6 1E+02 0.0022 29.4 21.7 149 51-241 222-371 (430)
113 PRK03629 tolB translocation pr 69.2 1.1E+02 0.0024 29.3 22.8 85 225-336 311-395 (429)
114 KOG0646|consensus 68.9 1.1E+02 0.0024 29.2 13.5 59 79-153 84-146 (476)
115 PRK04792 tolB translocation pr 67.6 1.2E+02 0.0026 29.2 21.7 148 52-241 242-390 (448)
116 PF03178 CPSF_A: CPSF A subuni 66.1 1.1E+02 0.0023 28.0 14.0 138 87-266 42-190 (321)
117 KOG0316|consensus 65.0 94 0.002 27.0 13.3 178 52-299 81-260 (307)
118 PRK05137 tolB translocation pr 64.6 1.4E+02 0.0029 28.7 20.8 62 52-120 226-287 (435)
119 PLN00181 protein SPA1-RELATED; 64.6 1.9E+02 0.0041 30.4 23.9 22 210-235 629-650 (793)
120 KOG2321|consensus 64.1 65 0.0014 31.6 9.5 77 192-299 130-208 (703)
121 KOG0316|consensus 62.4 54 0.0012 28.4 7.7 80 225-337 81-166 (307)
122 KOG2321|consensus 62.1 79 0.0017 31.1 9.6 62 76-153 133-198 (703)
123 PF13570 PQQ_3: PQQ-like domai 61.7 19 0.0004 21.1 3.8 25 254-297 16-40 (40)
124 PLN00181 protein SPA1-RELATED; 60.5 2.2E+02 0.0048 29.8 14.7 23 210-236 587-609 (793)
125 PF10282 Lactonase: Lactonase, 59.9 1.4E+02 0.0031 27.5 22.3 74 210-305 203-286 (345)
126 PRK05137 tolB translocation pr 57.4 1.8E+02 0.0039 27.8 22.6 63 51-120 181-243 (435)
127 KOG0286|consensus 56.6 1.5E+02 0.0033 26.6 14.4 95 210-339 108-212 (343)
128 PF13088 BNR_2: BNR repeat-lik 55.6 1.4E+02 0.0031 26.1 17.7 234 61-330 29-275 (275)
129 PRK04043 tolB translocation pr 55.6 1.9E+02 0.0042 27.6 19.7 150 52-242 213-366 (419)
130 KOG0282|consensus 54.7 36 0.00079 32.4 6.0 51 210-270 269-322 (503)
131 KOG0646|consensus 54.2 2E+02 0.0044 27.4 12.4 60 30-96 84-144 (476)
132 PTZ00420 coronin; Provisional 53.6 2.5E+02 0.0053 28.2 18.5 25 210-234 225-249 (568)
133 COG2706 3-carboxymuconate cycl 52.8 1.9E+02 0.0041 26.6 20.9 65 225-305 167-232 (346)
134 KOG4378|consensus 51.7 95 0.002 30.0 8.2 25 210-238 220-244 (673)
135 PTZ00421 coronin; Provisional 50.7 2.6E+02 0.0055 27.5 16.5 23 210-236 179-201 (493)
136 KOG0318|consensus 50.2 2.6E+02 0.0055 27.4 21.4 110 210-361 454-565 (603)
137 PF02897 Peptidase_S9_N: Proly 49.3 2.4E+02 0.0051 26.7 18.8 151 102-304 251-412 (414)
138 PF07734 FBA_1: F-box associat 49.0 1.4E+02 0.0031 24.0 9.4 81 34-120 2-92 (164)
139 PRK04922 tolB translocation pr 48.5 2.5E+02 0.0055 26.8 23.2 60 225-305 316-377 (433)
140 PF09910 DUF2139: Uncharacteri 47.5 2.2E+02 0.0047 25.8 14.4 172 133-331 38-219 (339)
141 TIGR02658 TTQ_MADH_Hv methylam 46.9 2.5E+02 0.0053 26.2 20.6 67 210-299 259-333 (352)
142 COG4447 Uncharacterized protei 46.5 2.2E+02 0.0047 25.5 11.7 90 212-333 227-322 (339)
143 PRK01742 tolB translocation pr 46.2 2.7E+02 0.0059 26.6 20.6 41 288-336 353-393 (429)
144 KOG0265|consensus 45.4 2.3E+02 0.0051 25.5 11.0 68 141-239 58-126 (338)
145 TIGR02658 TTQ_MADH_Hv methylam 44.4 2.7E+02 0.0058 26.0 12.8 131 168-329 27-170 (352)
146 PF07433 DUF1513: Protein of u 43.6 2.5E+02 0.0055 25.5 10.4 114 193-335 2-121 (305)
147 PRK02889 tolB translocation pr 42.9 3.1E+02 0.0067 26.2 22.2 61 52-119 220-280 (427)
148 KOG0318|consensus 42.7 3.4E+02 0.0073 26.6 11.3 34 196-236 487-520 (603)
149 PF15525 DUF4652: Domain of un 39.5 2.3E+02 0.0049 23.7 8.4 67 224-305 87-157 (200)
150 PRK01742 tolB translocation pr 37.0 3.8E+02 0.0083 25.6 19.1 61 52-119 228-288 (429)
151 KOG1523|consensus 36.9 2.1E+02 0.0046 26.1 7.7 100 169-302 33-138 (361)
152 PF02897 Peptidase_S9_N: Proly 36.8 3.7E+02 0.008 25.4 16.9 162 40-241 241-412 (414)
153 KOG0289|consensus 36.4 3.9E+02 0.0084 25.5 13.2 58 226-305 412-471 (506)
154 PRK11028 6-phosphogluconolacto 36.1 3.3E+02 0.0072 24.6 25.5 68 39-119 3-74 (330)
155 PF09910 DUF2139: Uncharacteri 35.6 3.4E+02 0.0074 24.6 14.6 101 37-147 117-219 (339)
156 PRK00178 tolB translocation pr 35.6 4E+02 0.0086 25.4 23.6 148 103-305 223-372 (430)
157 KOG0308|consensus 34.7 5E+02 0.011 26.3 13.2 72 141-236 129-204 (735)
158 KOG0306|consensus 34.2 5.4E+02 0.012 26.6 14.1 26 210-239 519-544 (888)
159 PF12217 End_beta_propel: Cata 34.1 3.3E+02 0.0072 24.1 16.8 67 29-96 76-155 (367)
160 PF14781 BBS2_N: Ciliary BBSom 33.5 2.1E+02 0.0045 22.5 6.3 65 210-303 63-134 (136)
161 KOG4378|consensus 33.4 4.7E+02 0.01 25.6 11.6 72 130-233 209-280 (673)
162 KOG0643|consensus 33.3 3.5E+02 0.0076 24.1 16.9 55 210-271 201-255 (327)
163 KOG1523|consensus 32.6 3.9E+02 0.0085 24.4 8.7 94 210-334 21-121 (361)
164 PRK03629 tolB translocation pr 32.6 4.5E+02 0.0098 25.1 20.8 62 52-120 223-284 (429)
165 TIGR03075 PQQ_enz_alc_DH PQQ-d 32.6 5.1E+02 0.011 25.7 20.6 107 3-117 80-197 (527)
166 PRK02889 tolB translocation pr 32.5 4.5E+02 0.0098 25.1 22.2 61 225-305 308-369 (427)
167 KOG0308|consensus 29.8 2E+02 0.0044 28.8 6.9 67 210-299 129-204 (735)
168 PF15525 DUF4652: Domain of un 28.8 3.5E+02 0.0076 22.6 7.8 67 50-120 86-157 (200)
169 PF06433 Me-amine-dh_H: Methyl 28.2 1.4E+02 0.003 27.6 5.3 102 210-331 47-162 (342)
170 KOG0315|consensus 27.6 4.3E+02 0.0093 23.3 19.6 98 210-337 135-238 (311)
171 PRK04043 tolB translocation pr 26.6 5.7E+02 0.012 24.4 22.2 153 103-305 213-366 (419)
172 KOG0268|consensus 26.5 3.1E+02 0.0067 25.5 7.1 63 198-269 270-335 (433)
173 KOG0281|consensus 24.9 5.6E+02 0.012 23.8 9.4 42 288-337 340-381 (499)
174 KOG1332|consensus 24.7 4.9E+02 0.011 22.9 17.2 50 212-265 176-238 (299)
175 PF07734 FBA_1: F-box associat 24.4 3.7E+02 0.0081 21.5 13.6 89 83-188 2-92 (164)
176 KOG1332|consensus 24.2 5E+02 0.011 22.9 13.2 57 229-305 239-296 (299)
177 KOG3545|consensus 24.1 4.9E+02 0.011 22.8 16.7 157 128-331 64-235 (249)
178 PF02239 Cytochrom_D1: Cytochr 22.9 6.3E+02 0.014 23.6 15.3 195 31-268 39-238 (369)
179 PF14583 Pectate_lyase22: Olig 22.4 6.7E+02 0.015 23.7 13.0 272 4-331 62-367 (386)
180 PF05262 Borrelia_P83: Borreli 22.2 5.1E+02 0.011 25.4 8.2 66 222-305 372-437 (489)
181 KOG0278|consensus 21.5 5.7E+02 0.012 22.6 9.1 92 226-357 206-300 (334)
182 PRK11028 6-phosphogluconolacto 21.2 6.2E+02 0.013 22.8 23.5 26 210-239 186-213 (330)
183 KOG0266|consensus 21.1 7.6E+02 0.016 23.9 12.8 66 210-300 257-322 (456)
184 PLN03215 ascorbic acid mannose 20.9 7.1E+02 0.015 23.5 13.7 142 62-236 190-349 (373)
No 1
>KOG4152|consensus
Probab=100.00 E-value=2e-61 Score=430.74 Aligned_cols=376 Identities=64% Similarity=1.281 Sum_probs=350.6
Q ss_pred eeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEE
Q psy1098 12 YRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLI 91 (390)
Q Consensus 12 ~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv 91 (390)
-+|+++.+..++.|.+|.+|-++.+.+-|+||||.+++..+.++.||..+++|...+..|+.|.+++.|.++..+++||+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCcccccccee
Q psy1098 92 FGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFY 171 (390)
Q Consensus 92 ~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~ 171 (390)
|||+.+.++++||+|.+....+.|.++.+.++.++.+|++|.+|+....+++.|+|||...+..+...++| +|+||+|
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvP--rYLnDlY 174 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVP--RYLNDLY 174 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccc--hhhcceE
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999 9999999
Q ss_pred eeecCCCc-eeeeeccccCCCCCCCCceeeeEEee-ccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCC
Q psy1098 172 TLELKSGH-TTVWDMPGTYGGLPSPRESHTACSWT-DEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLP 249 (390)
Q Consensus 172 ~~d~~~~~-~~~W~~~~~~~~~p~~r~~~~~~~~~-~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~ 249 (390)
.+++..+. .-.|..+...+.+|.+|..|+++.+. ++.+..+++|+||+.+.++.|+|.+|+++.+|.+.+..+..|.|
T Consensus 175 ~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlP 254 (830)
T KOG4152|consen 175 ILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLP 254 (830)
T ss_pred EEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCC
Confidence 99998433 34599988899999999999999984 56668899999999999999999999999999999988999999
Q ss_pred CceeeEEEECCEEEEEcCcccCCCcc-ccccccccceecCceEEeecCCCeeeecccc-cccCCCCCCCCCcceeeeCCE
Q psy1098 250 RSLHTACVIGDRMFIFGGWVPILKDE-SRSLHEKEWKCSNQLACLHLPEMTWEDLSVE-VTDDFLPKPRAGHCASVINSR 327 (390)
Q Consensus 250 r~~~~~~~~~~~i~i~GG~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~-~~~~~~p~~r~~~~~~~~~~~ 327 (390)
|+.|+++.++++||||||+.....++ ....++.+|+|.+.+-++++++..|+.+-.. ......|.+|.||+++.++.+
T Consensus 255 RSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtR 334 (830)
T KOG4152|consen 255 RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTR 334 (830)
T ss_pred cccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccE
Confidence 99999999999999999998655433 4456889999999999999999999987543 223338999999999999999
Q ss_pred EEEEeccCCccccccceeeeCeeEEEEecCCCCCCceeEEecccceEEEeccCccccceeee
Q psy1098 328 MYIWSGRDDYKKAWNNQVCCKDLWYLEVEKPGPPGRIQLVRAATNNLEICWPGHPIADSYAI 389 (390)
Q Consensus 328 l~v~GG~~~~~~~~~~~~~~~d~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (390)
||+..|.+++.+.+++.++++|+|.+++++|+.+.++|++++..+.++++|..++++|+|++
T Consensus 335 lYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~rA~tNSlevsW~~V~ta~gYlL 396 (830)
T KOG4152|consen 335 LYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLVRANTNSLEVSWGAVATADGYLL 396 (830)
T ss_pred EEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEEecccceeEEechhhccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.6e-45 Score=349.92 Aligned_cols=312 Identities=23% Similarity=0.417 Sum_probs=251.0
Q ss_pred ceeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCC--C-cccceEEEECCCCcEEeeeecCCCCC-CCceeeEEEeC
Q psy1098 11 VYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNE--G-IVEELHVFNTATNQWFIPTLKGDIPP-GCAAYGIVVDN 86 (390)
Q Consensus 11 ~~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~-~~~~~~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~ 86 (390)
.++|.++. +.+.+|.+|.+|++++++++|||+||... . ..+++++||+.+++|+.++..+.+|. +|..|++++++
T Consensus 150 ~~~W~~~~-~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~ 228 (470)
T PLN02193 150 LGKWIKVE-QKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG 228 (470)
T ss_pred hceEEEcc-cCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC
Confidence 37999995 44457899999999999999999999642 2 34689999999999998876555554 46789999999
Q ss_pred CEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCcccc
Q psy1098 87 TRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKY 166 (390)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 166 (390)
++||++||.... ..++++|+||+.+++|++++++. ..|.+|+.|+++..+++|||+||.+.. ..
T Consensus 229 ~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~----~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~ 292 (470)
T PLN02193 229 STLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVE----EGPTPRSFHSMAADEENVYVFGGVSAT-----------AR 292 (470)
T ss_pred CEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCC----CCCCCccceEEEEECCEEEEECCCCCC-----------CC
Confidence 999999998643 45789999999999999998762 347899999999999999999998764 56
Q ss_pred ccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCC
Q psy1098 167 LDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQ 246 (390)
Q Consensus 167 ~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~ 246 (390)
.++++.||+.+ ++|..+...+.+|.+|..|+++++ +++||++||.++..++++++||+.+++|+++...+..
T Consensus 293 ~~~~~~yd~~t---~~W~~~~~~~~~~~~R~~~~~~~~-----~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~ 364 (470)
T PLN02193 293 LKTLDSYNIVD---KKWFHCSTPGDSFSIRGGAGLEVV-----QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVR 364 (470)
T ss_pred cceEEEEECCC---CEEEeCCCCCCCCCCCCCcEEEEE-----CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCC
Confidence 77899999987 799998766667889999999988 8999999998776678999999999999998766778
Q ss_pred CCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCccee--ee
Q psy1098 247 PLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCAS--VI 324 (390)
Q Consensus 247 p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~--~~ 324 (390)
|.+|..|++++++++|||+||....... .......+.+++++||+.+++|+++.........|.+|..|+++ .+
T Consensus 365 P~~R~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~ 440 (470)
T PLN02193 365 PSERSVFASAAVGKHIVIFGGEIAMDPL----AHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTI 440 (470)
T ss_pred CCCcceeEEEEECCEEEEECCccCCccc----cccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEE
Confidence 9999999999999999999998642210 01111124678999999999999987643223357788777543 23
Q ss_pred --CCEEEEEeccCCccccccceeeeCeeEEEEecC
Q psy1098 325 --NSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVEK 357 (390)
Q Consensus 325 --~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~~ 357 (390)
++.|+|+||....+ .+++|+|.++++.
T Consensus 441 ~~~~~~~~fGG~~~~~------~~~~D~~~~~~~~ 469 (470)
T PLN02193 441 DGKKGLVMHGGKAPTN------DRFDDLFFYGIDS 469 (470)
T ss_pred cCCceEEEEcCCCCcc------ccccceEEEecCC
Confidence 34599999997543 2669999998763
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8.3e-44 Score=328.97 Aligned_cols=321 Identities=25% Similarity=0.384 Sum_probs=245.8
Q ss_pred CCceeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCC---CcccceEEEECCCCcEEeeeecCCCCC-CCceeeEEE
Q psy1098 9 CPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNE---GIVEELHVFNTATNQWFIPTLKGDIPP-GCAAYGIVV 84 (390)
Q Consensus 9 ~~~~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~ 84 (390)
+.+.+|.++....+.+|.+|.+|++++++++|||+||... ...+++++||+.+++|..++..+..|. .+.+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 4567899998766668999999999999999999999642 245799999999999998875433343 245788999
Q ss_pred eCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCcc
Q psy1098 85 DNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSY 164 (390)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 164 (390)
++++||+|||.... ...+++++||+.+++|+.++++.. ...|.+|..|+++..+++|||+||......... +
T Consensus 84 ~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~--~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~---~-- 155 (341)
T PLN02153 84 VGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDE--EGGPEARTFHSMASDENHVYVFGGVSKGGLMKT---P-- 155 (341)
T ss_pred ECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCC--CCCCCCceeeEEEEECCEEEEECCccCCCccCC---C--
Confidence 99999999998643 346899999999999999887532 124689999999999999999999864321000 0
Q ss_pred ccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCC---------CccCcEEEEecCCC
Q psy1098 165 KYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSG---------NRLSDLFMLDINSM 235 (390)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~---------~~~~~v~~~d~~~~ 235 (390)
..+++++.||+.+ ++|..++..+..|.+|.+|+++++ +++|||+||... ...+++++||+.++
T Consensus 156 ~~~~~v~~yd~~~---~~W~~l~~~~~~~~~r~~~~~~~~-----~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~ 227 (341)
T PLN02153 156 ERFRTIEAYNIAD---GKWVQLPDPGENFEKRGGAGFAVV-----QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG 227 (341)
T ss_pred cccceEEEEECCC---CeEeeCCCCCCCCCCCCcceEEEE-----CCeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence 3457899999987 799997765556688999999888 899999998642 12578999999999
Q ss_pred eEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCC
Q psy1098 236 TWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKP 315 (390)
Q Consensus 236 ~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~ 315 (390)
+|+++...+.+|.+|..|++++++++|||+||....... .+.......+++++||+++++|+++..... ..+|..
T Consensus 228 ~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~-~~~pr~ 302 (341)
T PLN02153 228 KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLK----GHLGPGTLSNEGYALDTETLVWEKLGECGE-PAMPRG 302 (341)
T ss_pred cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccc----cccccccccccEEEEEcCccEEEeccCCCC-CCCCCc
Confidence 999987667789999999999999999999997422100 000111235799999999999999874211 126666
Q ss_pred CCCcceeee--CCEEEEEeccCCccccccceeeeCeeEEEEec
Q psy1098 316 RAGHCASVI--NSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVE 356 (390)
Q Consensus 316 r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~ 356 (390)
|..++++.+ +++|||+||++... ..++|+|.+++.
T Consensus 303 ~~~~~~~~v~~~~~~~~~gG~~~~~------~~~~~~~~~~~~ 339 (341)
T PLN02153 303 WTAYTTATVYGKNGLLMHGGKLPTN------ERTDDLYFYAVN 339 (341)
T ss_pred cccccccccCCcceEEEEcCcCCCC------ccccceEEEecc
Confidence 665555544 45899999997542 356899988653
No 4
>KOG4441|consensus
Probab=100.00 E-value=1.9e-41 Score=328.01 Aligned_cols=295 Identities=19% Similarity=0.341 Sum_probs=251.9
Q ss_pred eEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCC--CcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEE
Q psy1098 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNE--GIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVL 90 (390)
Q Consensus 13 ~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iy 90 (390)
.|+.++...+.++.+|....- ...+.||++||... ...+.+..||+.++.|..++ .+|.+|..+++++.+++||
T Consensus 261 ~~~~~~~~~~~~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lY 336 (571)
T KOG4441|consen 261 KYHLLPQRRPVMQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLY 336 (571)
T ss_pred HHhhCcccCccccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC---CCCcccccccEEEECCEEE
Confidence 344444322224444443332 45688999999875 57789999999999999999 8999999999999999999
Q ss_pred EEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccce
Q psy1098 91 IFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDF 170 (390)
Q Consensus 91 v~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~ 170 (390)
++||.+.....++.+++||+.+++|.++++|. .+|..++++++++.||++||.++. ..++++
T Consensus 337 v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-------~~R~~~~v~~l~g~iYavGG~dg~-----------~~l~sv 398 (571)
T KOG4441|consen 337 VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-------TKRSDFGVAVLDGKLYAVGGFDGE-----------KSLNSV 398 (571)
T ss_pred EEccccCCCcccceEEEecCCCCceeccCCcc-------CccccceeEEECCEEEEEeccccc-----------cccccE
Confidence 99999754556799999999999999999875 999999999999999999999965 788899
Q ss_pred eeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCC--ccCcEEEEecCCCeEeecccCCCCCC
Q psy1098 171 YTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN--RLSDLFMLDINSMTWQKPQILGPQPL 248 (390)
Q Consensus 171 ~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~v~~~d~~~~~W~~~~~~~~~p~ 248 (390)
.+||+.+ ++|.. .++|+.+|++|++++. +++||++||.++. .++.+++|||.+++|+. .++|+.
T Consensus 399 E~YDp~~---~~W~~---va~m~~~r~~~gv~~~-----~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~---~~~M~~ 464 (571)
T KOG4441|consen 399 ECYDPVT---NKWTP---VAPMLTRRSGHGVAVL-----GGKLYIIGGGDGSSNCLNSVECYDPETNTWTL---IAPMNT 464 (571)
T ss_pred EEecCCC---Ccccc---cCCCCcceeeeEEEEE-----CCEEEEEcCcCCCccccceEEEEcCCCCceee---cCCccc
Confidence 9999997 89998 5668889999999999 9999999998765 47999999999999999 779999
Q ss_pred CCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEE
Q psy1098 249 PRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRM 328 (390)
Q Consensus 249 ~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l 328 (390)
+|.++++++++++||++||+++.. ....+++||+++++|+.+.+ ++.+|..++++.++++|
T Consensus 465 ~R~~~g~a~~~~~iYvvGG~~~~~-------------~~~~VE~ydp~~~~W~~v~~------m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 465 RRSGFGVAVLNGKIYVVGGFDGTS-------------ALSSVERYDPETNQWTMVAP------MTSPRSAVGVVVLGGKL 525 (571)
T ss_pred ccccceEEEECCEEEEECCccCCC-------------ccceEEEEcCCCCceeEccc------CccccccccEEEECCEE
Confidence 999999999999999999997621 15679999999999999987 99999999999999999
Q ss_pred EEEeccCCccc--cccceeeeCeeEEEEecCCCCCCc
Q psy1098 329 YIWSGRDDYKK--AWNNQVCCKDLWYLEVEKPGPPGR 363 (390)
Q Consensus 329 ~v~GG~~~~~~--~~~~~~~~~d~w~~~~~~~~~~~~ 363 (390)
|++||+++... +.+.+.+..|.|....+ +.....
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~~~~ 561 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDTWTEVTE-PESGRG 561 (571)
T ss_pred EEEecccCccccceeEEcCCCCCceeeCCC-cccccc
Confidence 99999886643 35556788999999988 554443
No 5
>KOG4693|consensus
Probab=100.00 E-value=2.6e-41 Score=279.66 Aligned_cols=275 Identities=26% Similarity=0.463 Sum_probs=238.6
Q ss_pred CCceeeeEEeCCEEEEEccCCCC------cccceEEEECCCCcEEeeeec----------CCCCCCCceeeEEEeCCEEE
Q psy1098 27 PRHGHRAVAIKDLMLVFGGGNEG------IVEELHVFNTATNQWFIPTLK----------GDIPPGCAAYGIVVDNTRVL 90 (390)
Q Consensus 27 ~r~~~~~~~~~~~iyv~GG~~~~------~~~~~~~~d~~~~~W~~~~~~----------~~~p~~r~~~~~~~~~~~iy 90 (390)
.|..|+++.++..||-|||...+ ..-++..+|..+-+|..++.. +..|--|++|+++.+++++|
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y 92 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY 92 (392)
T ss_pred ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence 68999999999999999995432 335789999999999887651 11244599999999999999
Q ss_pred EEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccce
Q psy1098 91 IFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDF 170 (390)
Q Consensus 91 v~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~ 170 (390)
++||++......|-+++||+++++|.+... .+-.|.+|.+|+++++++.+|||||+..+.+ ++++++
T Consensus 93 vWGGRND~egaCN~Ly~fDp~t~~W~~p~v----~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~---------~FS~d~ 159 (392)
T KOG4693|consen 93 VWGGRNDDEGACNLLYEFDPETNVWKKPEV----EGFVPGARDGHSACVWGNQMYIFGGYEEDAQ---------RFSQDT 159 (392)
T ss_pred EEcCccCcccccceeeeeccccccccccce----eeecCCccCCceeeEECcEEEEecChHHHHH---------hhhccc
Confidence 999999877788999999999999987543 3667899999999999999999999987655 899999
Q ss_pred eeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCc----------cCcEEEEecCCCeEeec
Q psy1098 171 YTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNR----------LSDLFMLDINSMTWQKP 240 (390)
Q Consensus 171 ~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~----------~~~v~~~d~~~~~W~~~ 240 (390)
+++|+.+ .+|..+.+.+..|.=|.+|+++++ ++.+|||||..... -+++..+|+.|..|.+.
T Consensus 160 h~ld~~T---mtWr~~~Tkg~PprwRDFH~a~~~-----~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 160 HVLDFAT---MTWREMHTKGDPPRWRDFHTASVI-----DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred eeEeccc---eeeeehhccCCCchhhhhhhhhhc-----cceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence 9999998 689999988888888999999999 89999999985431 35688999999999998
Q ss_pred ccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcc
Q psy1098 241 QILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHC 320 (390)
Q Consensus 241 ~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~ 320 (390)
...+..|..|..|++.+.+++||+|||+++.-+. ..+++|+|||.+..|..+... +..|.+|..++
T Consensus 232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----------HfndLy~FdP~t~~W~~I~~~---Gk~P~aRRRqC 297 (392)
T KOG4693|consen 232 PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----------HFNDLYCFDPKTSMWSVISVR---GKYPSARRRQC 297 (392)
T ss_pred CCCCcCCCcccccceEEEcceEEEecccchhhhh-----------hhcceeecccccchheeeecc---CCCCCccccee
Confidence 8778889999999999999999999999875432 278999999999999999874 44899999999
Q ss_pred eeeeCCEEEEEeccCC
Q psy1098 321 ASVINSRMYIWSGRDD 336 (390)
Q Consensus 321 ~~~~~~~l~v~GG~~~ 336 (390)
+++.++|+|+|||..-
T Consensus 298 ~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 298 SVVSGGKVYLFGGTSP 313 (392)
T ss_pred EEEECCEEEEecCCCC
Confidence 9999999999999853
No 6
>KOG4441|consensus
Probab=100.00 E-value=7.1e-40 Score=317.03 Aligned_cols=265 Identities=21% Similarity=0.421 Sum_probs=236.4
Q ss_pred CCCCCCCCCceeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCC--CcccceEEEECCCCcEEeeeecCCCCCCCce
Q psy1098 2 DKLSDDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNE--GIVEELHVFNTATNQWFIPTLKGDIPPGCAA 79 (390)
Q Consensus 2 ~~~~~~~~~~~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~ 79 (390)
+.+.+||+.+++|..++ ++|.+|..+++++++++||++||.+. ...+++++||+.+++|..++ +|+.+|..
T Consensus 301 ~~ve~yd~~~~~w~~~a----~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~ 373 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLA----PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSD 373 (571)
T ss_pred ceeEEecCCcCcEeecC----CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccC---CccCcccc
Confidence 45678999999999999 89999999999999999999999873 47799999999999999988 89999999
Q ss_pred eeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCC
Q psy1098 80 YGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETK 159 (390)
Q Consensus 80 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~ 159 (390)
++++++++.||++||.+ ....++.+++||+.+++|+.+++|. .+|++|++++++++||++||.+...
T Consensus 374 ~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va~m~-------~~r~~~gv~~~~g~iYi~GG~~~~~----- 440 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVAPML-------TRRSGHGVAVLGGKLYIIGGGDGSS----- 440 (571)
T ss_pred ceeEEECCEEEEEeccc-cccccccEEEecCCCCcccccCCCC-------cceeeeEEEEECCEEEEEcCcCCCc-----
Confidence 99999999999999997 3456789999999999999999874 7999999999999999999988773
Q ss_pred CCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCC-ccCcEEEEecCCCeEe
Q psy1098 160 PTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQ 238 (390)
Q Consensus 160 ~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~d~~~~~W~ 238 (390)
.+++++.+||+.+ ++|.. .++|+.+|.++.++++ +++||++||.++. .+..+++||+.+++|+
T Consensus 441 -----~~l~sve~YDP~t---~~W~~---~~~M~~~R~~~g~a~~-----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 441 -----NCLNSVECYDPET---NTWTL---IAPMNTRRSGFGVAVL-----NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred -----cccceEEEEcCCC---Cceee---cCCcccccccceEEEE-----CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 4889999999998 79999 5679999999999999 9999999999884 3677999999999999
Q ss_pred ecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCC
Q psy1098 239 KPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAG 318 (390)
Q Consensus 239 ~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~ 318 (390)
. .+.++.+|..++++++++++|++||.++.. +.+.+..|||.+++|+.+.. +...|.+
T Consensus 505 ~---v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~-------------~l~~ve~ydp~~d~W~~~~~------~~~~~~~ 562 (571)
T KOG4441|consen 505 M---VAPMTSPRSAVGVVVLGGKLYAVGGFDGNN-------------NLNTVECYDPETDTWTEVTE------PESGRGG 562 (571)
T ss_pred E---cccCccccccccEEEECCEEEEEecccCcc-------------ccceeEEcCCCCCceeeCCC------ccccccC
Confidence 9 578999999999999999999999976543 37899999999999999986 5556665
Q ss_pred cceeee
Q psy1098 319 HCASVI 324 (390)
Q Consensus 319 ~~~~~~ 324 (390)
.++++.
T Consensus 563 ~~~~~~ 568 (571)
T KOG4441|consen 563 AGVAVI 568 (571)
T ss_pred cceEEe
Confidence 555543
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.3e-38 Score=304.73 Aligned_cols=289 Identities=19% Similarity=0.350 Sum_probs=229.3
Q ss_pred CceeeeEEeCCEEEEEccCCCCcccceEEE--ECCC----CcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCC-ce
Q psy1098 28 RHGHRAVAIKDLMLVFGGGNEGIVEELHVF--NTAT----NQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEY-GK 100 (390)
Q Consensus 28 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--d~~~----~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~ 100 (390)
..+...+..+++|+.|+|......+.+-.| ++.+ ++|..+...+.+|.+|..|++++++++||++||.... ..
T Consensus 111 ~~g~~f~~~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~ 190 (470)
T PLN02193 111 RPGVKFVLQGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQP 190 (470)
T ss_pred CCCCEEEEcCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCC
Confidence 345555556899999999776666665555 6544 8999998766789999999999999999999998532 23
Q ss_pred eecceEEEEcCcceeEEecCCCCCCCCCCC-CCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCc
Q psy1098 101 YSSDLYELQASKWEWKRLKPKPPRFGSPPC-PRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH 179 (390)
Q Consensus 101 ~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (390)
..+++|+||+.+++|+.++++ +..|. +|..|++++++++|||+||.... ..++++++||+.+
T Consensus 191 ~~~~v~~yD~~~~~W~~~~~~----g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-----------~~~ndv~~yD~~t-- 253 (470)
T PLN02193 191 IDKHLYVFDLETRTWSISPAT----GDVPHLSCLGVRMVSIGSTLYVFGGRDAS-----------RQYNGFYSFDTTT-- 253 (470)
T ss_pred eeCcEEEEECCCCEEEeCCCC----CCCCCCcccceEEEEECCEEEEECCCCCC-----------CCCccEEEEECCC--
Confidence 557899999999999987653 22333 46788999999999999998754 5678999999987
Q ss_pred eeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCC-ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE
Q psy1098 180 TTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI 258 (390)
Q Consensus 180 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 258 (390)
++|+.+.+.+..|.+|+.|++++. +++|||+||.... .++++++||+.+++|+.+...+.+|.+|..|+++++
T Consensus 254 -~~W~~l~~~~~~P~~R~~h~~~~~-----~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~ 327 (470)
T PLN02193 254 -NEWKLLTPVEEGPTPRSFHSMAAD-----EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV 327 (470)
T ss_pred -CEEEEcCcCCCCCCCccceEEEEE-----CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE
Confidence 799997766566899999999988 8999999998765 478899999999999998765667889999999999
Q ss_pred CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCcc
Q psy1098 259 GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYK 338 (390)
Q Consensus 259 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 338 (390)
+++||++||.+.. ..+++++||+.+++|++++.. +..|.+|..|+++.++++|||+||.....
T Consensus 328 ~gkiyviGG~~g~--------------~~~dv~~yD~~t~~W~~~~~~---g~~P~~R~~~~~~~~~~~iyv~GG~~~~~ 390 (470)
T PLN02193 328 QGKVWVVYGFNGC--------------EVDDVHYYDPVQDKWTQVETF---GVRPSERSVFASAAVGKHIVIFGGEIAMD 390 (470)
T ss_pred CCcEEEEECCCCC--------------ccCceEEEECCCCEEEEeccC---CCCCCCcceeEEEEECCEEEEECCccCCc
Confidence 9999999997432 157899999999999999762 22688999999999999999999986421
Q ss_pred cc-c-cceeeeCeeEEEEec
Q psy1098 339 KA-W-NNQVCCKDLWYLEVE 356 (390)
Q Consensus 339 ~~-~-~~~~~~~d~w~~~~~ 356 (390)
.. . ......+|+|.+++.
T Consensus 391 ~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 391 PLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred cccccCccceeccEEEEEcC
Confidence 10 0 011233566666654
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-39 Score=311.69 Aligned_cols=265 Identities=13% Similarity=0.184 Sum_probs=222.5
Q ss_pred EEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEe
Q psy1098 39 LMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRL 118 (390)
Q Consensus 39 ~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~ 118 (390)
.+++.||........+++||+.+++|..++ ++|.+|..+++++.+++||++||........+++++||+.+++|..+
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~ 335 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL 335 (557)
T ss_pred EEEEecCccccCCCCEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC
Confidence 355555532223357899999999999998 78999999999999999999999853444568899999999999999
Q ss_pred cCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCce
Q psy1098 119 KPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRES 198 (390)
Q Consensus 119 ~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~ 198 (390)
++| |.+|..+++++++++||++||.+.. ...+++.+||+.+ ++|.. .+++|.+|..
T Consensus 336 ~~m-------~~~R~~~~~~~~~g~IYviGG~~~~-----------~~~~sve~Ydp~~---~~W~~---~~~mp~~r~~ 391 (557)
T PHA02713 336 PPM-------IKNRCRFSLAVIDDTIYAIGGQNGT-----------NVERTIECYTMGD---DKWKM---LPDMPIALSS 391 (557)
T ss_pred CCC-------cchhhceeEEEECCEEEEECCcCCC-----------CCCceEEEEECCC---CeEEE---CCCCCccccc
Confidence 886 4899999999999999999998643 4567799999887 79998 5579999999
Q ss_pred eeeEEeeccCCCcEEEEEcCCCCC-------------------ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEEC
Q psy1098 199 HTACSWTDEYKNTKLIIYGGMSGN-------------------RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIG 259 (390)
Q Consensus 199 ~~~~~~~~~~~~~~i~v~GG~~~~-------------------~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 259 (390)
+++++. +++||++||.++. ..+.+++|||.+++|+. .++++.+|..+++++++
T Consensus 392 ~~~~~~-----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~---v~~m~~~r~~~~~~~~~ 463 (557)
T PHA02713 392 YGMCVL-----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET---LPNFWTGTIRPGVVSHK 463 (557)
T ss_pred ccEEEE-----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee---cCCCCcccccCcEEEEC
Confidence 999998 9999999997632 15679999999999999 67899999999999999
Q ss_pred CEEEEEcCcccCCCccccccccccceecCceEEeecCC-CeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCcc
Q psy1098 260 DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPE-MTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYK 338 (390)
Q Consensus 260 ~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 338 (390)
++||++||.+... .....+++|||++ ++|+.+++ +|.+|..+++++++++||++||.++..
T Consensus 464 ~~IYv~GG~~~~~------------~~~~~ve~Ydp~~~~~W~~~~~------m~~~r~~~~~~~~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 464 DDIYVVCDIKDEK------------NVKTCIFRYNTNTYNGWELITT------TESRLSALHTILHDNTIMMLHCYESYM 525 (557)
T ss_pred CEEEEEeCCCCCC------------ccceeEEEecCCCCCCeeEccc------cCcccccceeEEECCEEEEEeeeccee
Confidence 9999999975321 0134689999999 89999998 999999999999999999999998743
Q ss_pred ccccceeeeCeeEEEEecC
Q psy1098 339 KAWNNQVCCKDLWYLEVEK 357 (390)
Q Consensus 339 ~~~~~~~~~~d~w~~~~~~ 357 (390)
..+.+.+..|.|..-.+.
T Consensus 526 -~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 526 -LQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred -ehhhcCcccccccchhhh
Confidence 456677888999876543
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6e-39 Score=312.01 Aligned_cols=258 Identities=9% Similarity=0.160 Sum_probs=216.7
Q ss_pred CCCCCCCCceeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCC--CCcccceEEEECCCCcEEeeeecCCCCCCCcee
Q psy1098 3 KLSDDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGN--EGIVEELHVFNTATNQWFIPTLKGDIPPGCAAY 80 (390)
Q Consensus 3 ~~~~~~~~~~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 80 (390)
.+.+||+.+++|..++ ++|.+|..|++++++++||++||.. ....+.+++||+.+++|..++ ++|.+|..+
T Consensus 273 ~v~~yd~~~~~W~~l~----~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~ 345 (557)
T PHA02713 273 CILVYNINTMEYSVIS----TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---PMIKNRCRF 345 (557)
T ss_pred CEEEEeCCCCeEEECC----CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---CCcchhhce
Confidence 3567999999999998 8999999999999999999999964 235688999999999999988 899999999
Q ss_pred eEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCC-
Q psy1098 81 GIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETK- 159 (390)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~- 159 (390)
++++.+++||++||.... ...+.+++||+.+++|..+++| |.+|..+++++++++||++||.+........
T Consensus 346 ~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~m-------p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDM-------PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred eEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCC-------CcccccccEEEECCEEEEEeCCCccccccccc
Confidence 999999999999998533 3467899999999999999885 5899999999999999999998642100000
Q ss_pred ------CCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCc--cCcEEEEe
Q psy1098 160 ------PTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNR--LSDLFMLD 231 (390)
Q Consensus 160 ------~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~v~~~d 231 (390)
........+.+++||+.+ ++|+. .++++.+|..++++++ +++||++||.++.. .+.+++||
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~t---d~W~~---v~~m~~~r~~~~~~~~-----~~~IYv~GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVN---NIWET---LPNFWTGTIRPGVVSH-----KDDIYVVCDIKDEKNVKTCIFRYN 486 (557)
T ss_pred ccccccccccccccceEEEECCCC---CeEee---cCCCCcccccCcEEEE-----CCEEEEEeCCCCCCccceeEEEec
Confidence 000002356789999887 79998 5578999999999999 99999999986532 35689999
Q ss_pred cCC-CeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 232 INS-MTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 232 ~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
|.+ ++|+. .+++|.+|..+++++++++||++||.++ ...+++||+.+++|+.+.+
T Consensus 487 p~~~~~W~~---~~~m~~~r~~~~~~~~~~~iyv~Gg~~~----------------~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 487 TNTYNGWEL---ITTTESRLSALHTILHDNTIMMLHCYES----------------YMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCCCCCeeE---ccccCcccccceeEEECCEEEEEeeecc----------------eeehhhcCcccccccchhh
Confidence 999 89999 6789999999999999999999999853 2378899999999999876
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.7e-37 Score=287.95 Aligned_cols=294 Identities=18% Similarity=0.261 Sum_probs=215.3
Q ss_pred CCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEEC--CCCcEEeeeecCCCC-CCCceeeEEEeCCEEEEEcceeCCc
Q psy1098 23 PQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNT--ATNQWFIPTLKGDIP-PGCAAYGIVVDNTRVLIFGGMVEYG 99 (390)
Q Consensus 23 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~ 99 (390)
.+|.+|..+++++++++|||+||.. .+.+++||+ .+++|..++ ++| .+|..+++++++++||++||.....
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~---~~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSA---GTSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CCCccccCceEEEECCEEEEEcccc---CCeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCC
Confidence 6889999999989999999999963 267899996 578899988 777 5899999999999999999985322
Q ss_pred -----eeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEE-EECCEEEEEcCccCCCCC----------CC-----
Q psy1098 100 -----KYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFT-LIGNKVYLFGGLANSGGD----------ET----- 158 (390)
Q Consensus 100 -----~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~----------~~----- 158 (390)
...+++|+||+.+++|++++.. +|.+|.+++++ .++++||++||.+....+ ..
T Consensus 77 ~~~~~~~~~~v~~Yd~~~~~W~~~~~~------~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 77 SEGSPQVFDDVYRYDPKKNSWQKLDTR------SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred CCCcceecccEEEEECCCCEEecCCCC------CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 2568999999999999998631 35677777776 689999999998632100 00
Q ss_pred --------CCCCccccccceeeeecCCCceeeeeccccCCCCCC-CCceeeeEEeeccCCCcEEEEEcCCCCC--ccCcE
Q psy1098 159 --------KPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPS-PRESHTACSWTDEYKNTKLIIYGGMSGN--RLSDL 227 (390)
Q Consensus 159 --------~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~v 227 (390)
.....+.+.+++++||+.+ ++|+.+ +++|. +|..++++.+ +++|||+||.... ...++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t---~~W~~~---~~~p~~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~ 219 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPST---NQWRNL---GENPFLGTAGSAIVHK-----GNKLLLINGEIKPGLRTAEV 219 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCC---CceeEC---ccCCCCcCCCceEEEE-----CCEEEEEeeeeCCCccchhe
Confidence 0000012347899999987 799994 45775 6788888888 9999999997533 23456
Q ss_pred EEEe--cCCCeEeecccCCCCCCCC-------ceeeEEEECCEEEEEcCcccCCCccc----cccccccceecCceEEee
Q psy1098 228 FMLD--INSMTWQKPQILGPQPLPR-------SLHTACVIGDRMFIFGGWVPILKDES----RSLHEKEWKCSNQLACLH 294 (390)
Q Consensus 228 ~~~d--~~~~~W~~~~~~~~~p~~r-------~~~~~~~~~~~i~i~GG~~~~~~~~~----~~~~~~~~~~~~~~~~~d 294 (390)
+.|+ +++++|+.+ ..+|.+| ..|++++++++|||+||.+....... .............+++||
T Consensus 220 ~~y~~~~~~~~W~~~---~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 296 (346)
T TIGR03547 220 KQYLFTGGKLEWNKL---PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA 296 (346)
T ss_pred EEEEecCCCceeeec---CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE
Confidence 6665 567799994 4566554 45667889999999999863211000 000000000124688999
Q ss_pred cCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCccccccceeeeCeeEEEE
Q psy1098 295 LPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKDLWYLE 354 (390)
Q Consensus 295 ~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~ 354 (390)
+++++|+.+.+ +|.+|..++++.++++|||+||.+.... ..+|++.+.
T Consensus 297 ~~~~~W~~~~~------lp~~~~~~~~~~~~~~iyv~GG~~~~~~------~~~~v~~~~ 344 (346)
T TIGR03547 297 LDNGKWSKVGK------LPQGLAYGVSVSWNNGVLLIGGENSGGK------AVTDVYLLS 344 (346)
T ss_pred ecCCcccccCC------CCCCceeeEEEEcCCEEEEEeccCCCCC------EeeeEEEEE
Confidence 99999999988 9999999998899999999999865432 556776654
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1e-36 Score=279.76 Aligned_cols=272 Identities=17% Similarity=0.233 Sum_probs=206.9
Q ss_pred CCCceeeeEEeCCEEEEEccCCCC-----------cccceEEEE-CCC-CcEEeeeecCCCCCCCceeeEEEeCCEEEEE
Q psy1098 26 RPRHGHRAVAIKDLMLVFGGGNEG-----------IVEELHVFN-TAT-NQWFIPTLKGDIPPGCAAYGIVVDNTRVLIF 92 (390)
Q Consensus 26 ~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~d-~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~ 92 (390)
..++++.++++++.|||+||.+.. ..+++++|+ +.. .+|..+. .+|.+|..+++++++++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEE
Confidence 367889999999999999996532 235788885 332 2698877 789999888888999999999
Q ss_pred cceeCCceeecceEEEEcCccee----EEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCcccccc
Q psy1098 93 GGMVEYGKYSSDLYELQASKWEW----KRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLD 168 (390)
Q Consensus 93 GG~~~~~~~~~~v~~~d~~~~~W----~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 168 (390)
||.... ...+++++||+.+++| ..+++ +|.+|..|++++++++||++||.... ...+
T Consensus 79 GG~~~~-~~~~~v~~~d~~~~~w~~~~~~~~~-------lp~~~~~~~~~~~~~~iYv~GG~~~~-----------~~~~ 139 (323)
T TIGR03548 79 GGSNSS-ERFSSVYRITLDESKEELICETIGN-------LPFTFENGSACYKDGTLYVGGGNRNG-----------KPSN 139 (323)
T ss_pred cCCCCC-CCceeEEEEEEcCCceeeeeeEcCC-------CCcCccCceEEEECCEEEEEeCcCCC-----------ccCc
Confidence 998643 3568999999999988 45544 46889999999999999999997543 5578
Q ss_pred ceeeeecCCCceeeeeccccCCCCC-CCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCC--C
Q psy1098 169 DFYTLELKSGHTTVWDMPGTYGGLP-SPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILG--P 245 (390)
Q Consensus 169 ~~~~~d~~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~--~ 245 (390)
++++||+.+ ++|+.+. ++| .+|..|+++.+ +++|||+||.++....++++||+.+++|+.+.... .
T Consensus 140 ~v~~yd~~~---~~W~~~~---~~p~~~r~~~~~~~~-----~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 208 (323)
T TIGR03548 140 KSYLFNLET---QEWFELP---DFPGEPRVQPVCVKL-----QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDS 208 (323)
T ss_pred eEEEEcCCC---CCeeECC---CCCCCCCCcceEEEE-----CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCC
Confidence 899999987 7899854 455 36888888888 89999999987655667899999999999965432 2
Q ss_pred CCCCCceeeE-EEECCEEEEEcCcccCCCccccccc-------------------cccceecCceEEeecCCCeeeeccc
Q psy1098 246 QPLPRSLHTA-CVIGDRMFIFGGWVPILKDESRSLH-------------------EKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 246 ~p~~r~~~~~-~~~~~~i~i~GG~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
.|..+..+++ ++.+++|||+||.+.....+..... .....+.+++++||+.+++|+.+++
T Consensus 209 ~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 209 EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 3344444444 4447999999998642100000000 0011124689999999999999987
Q ss_pred ccccCCCC-CCCCCcceeeeCCEEEEEeccCC
Q psy1098 306 EVTDDFLP-KPRAGHCASVINSRMYIWSGRDD 336 (390)
Q Consensus 306 ~~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~ 336 (390)
+| .+|.+++++.++++||++||...
T Consensus 289 ------~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 289 ------SPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred ------ccccccCchheEEECCEEEEEecccc
Confidence 76 58999999999999999999854
No 12
>KOG4693|consensus
Probab=100.00 E-value=1.9e-37 Score=256.77 Aligned_cols=254 Identities=29% Similarity=0.556 Sum_probs=219.5
Q ss_pred CCCCCCCceeEEecCC---------CCCCCCCCCceeeeEEeCCEEEEEccCCC--CcccceEEEECCCCcEEeeeecCC
Q psy1098 4 LSDDNCPVYRWRRIDD---------PAGPQPRPRHGHRAVAIKDLMLVFGGGNE--GIVEELHVFNTATNQWFIPTLKGD 72 (390)
Q Consensus 4 ~~~~~~~~~~W~~~~~---------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~d~~~~~W~~~~~~~~ 72 (390)
+..++..+.+|.++++ +-+-.|-.|++|+.+.+.+++||+||++. +..+-++.||++++.|+....+|.
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~ 125 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF 125 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeee
Confidence 3446777889999864 11234567999999999999999999876 477889999999999999999999
Q ss_pred CCCCCceeeEEEeCCEEEEEcceeCCc-eeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCcc
Q psy1098 73 IPPGCAAYGIVVDNTRVLIFGGMVEYG-KYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLA 151 (390)
Q Consensus 73 ~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 151 (390)
.|.+|-+|++|+.++..|||||..+.- .++++++.+|..+.+|+.+... +.+|.=|..|+++++++.+|||||+.
T Consensus 126 vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk----g~PprwRDFH~a~~~~~~MYiFGGR~ 201 (392)
T KOG4693|consen 126 VPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK----GDPPRWRDFHTASVIDGMMYIFGGRS 201 (392)
T ss_pred cCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc----CCCchhhhhhhhhhccceEEEecccc
Confidence 999999999999999999999997543 5688999999999999998764 56778899999999999999999998
Q ss_pred CCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCC---ccCcEE
Q psy1098 152 NSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN---RLSDLF 228 (390)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~---~~~~v~ 228 (390)
+....=-...+ .+++.+..+|+.+ ..|...+..+-.|.+|..|++.++ ++++|||||+.+. .++++|
T Consensus 202 D~~gpfHs~~e--~Yc~~i~~ld~~T---~aW~r~p~~~~~P~GRRSHS~fvY-----ng~~Y~FGGYng~ln~HfndLy 271 (392)
T KOG4693|consen 202 DESGPFHSIHE--QYCDTIMALDLAT---GAWTRTPENTMKPGGRRSHSTFVY-----NGKMYMFGGYNGTLNVHFNDLY 271 (392)
T ss_pred ccCCCccchhh--hhcceeEEEeccc---cccccCCCCCcCCCcccccceEEE-----cceEEEecccchhhhhhhccee
Confidence 75432212223 6788899999997 689998777778999999999999 9999999999875 389999
Q ss_pred EEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccC
Q psy1098 229 MLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPI 271 (390)
Q Consensus 229 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~ 271 (390)
.||+.+..|..+...+.-|.+|..+++++.+++||+|||.+..
T Consensus 272 ~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP~ 314 (392)
T KOG4693|consen 272 CFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSPL 314 (392)
T ss_pred ecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCCC
Confidence 9999999999999999999999999999999999999998763
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=4.3e-36 Score=280.49 Aligned_cols=302 Identities=17% Similarity=0.209 Sum_probs=219.0
Q ss_pred eEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEECC--CCcEEeeeecCCCC-CCCceeeEEEeCCEE
Q psy1098 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTA--TNQWFIPTLKGDIP-PGCAAYGIVVDNTRV 89 (390)
Q Consensus 13 ~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~i 89 (390)
.++.|+ ++|.+|..+++++++++|||+||... +.++.||+. +++|..++ .+| .+|..+++++++++|
T Consensus 18 ~~~~l~----~lP~~~~~~~~~~~~~~iyv~gG~~~---~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~I 87 (376)
T PRK14131 18 NAEQLP----DLPVPFKNGTGAIDNNTVYVGLGSAG---TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKL 87 (376)
T ss_pred ecccCC----CCCcCccCCeEEEECCEEEEEeCCCC---CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEE
Confidence 456666 89999998899999999999999632 458899986 47899887 566 589999999999999
Q ss_pred EEEcceeC-C----ceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEE-ECCEEEEEcCccCCCCC-------
Q psy1098 90 LIFGGMVE-Y----GKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTL-IGNKVYLFGGLANSGGD------- 156 (390)
Q Consensus 90 yv~GG~~~-~----~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~------- 156 (390)
|++||... . ....+++|+||+.+++|++++++ .|.++.+|++++ .+++||++||.......
T Consensus 88 YV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~------~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~ 161 (376)
T PRK14131 88 YVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR------SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161 (376)
T ss_pred EEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC------CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhh
Confidence 99999864 1 13468999999999999998752 256777888777 79999999997532000
Q ss_pred -----C-----------CCCCCccccccceeeeecCCCceeeeeccccCCCCCC-CCceeeeEEeeccCCCcEEEEEcCC
Q psy1098 157 -----E-----------TKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPS-PRESHTACSWTDEYKNTKLIIYGGM 219 (390)
Q Consensus 157 -----~-----------~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~~~~~~i~v~GG~ 219 (390)
. ......|.+.+++++||+.+ ++|.. .+.+|. +|..|+++.. +++|||+||.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t---~~W~~---~~~~p~~~~~~~a~v~~-----~~~iYv~GG~ 230 (376)
T PRK14131 162 AAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPST---NQWKN---AGESPFLGTAGSAVVIK-----GNKLWLINGE 230 (376)
T ss_pred hcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCC---CeeeE---CCcCCCCCCCcceEEEE-----CCEEEEEeee
Confidence 0 00001123457899999987 79998 445775 6788888888 8999999996
Q ss_pred CCC--ccCcEE--EEecCCCeEeecccCCCCCCCCc--------eeeEEEECCEEEEEcCcccCCCccc----ccccccc
Q psy1098 220 SGN--RLSDLF--MLDINSMTWQKPQILGPQPLPRS--------LHTACVIGDRMFIFGGWVPILKDES----RSLHEKE 283 (390)
Q Consensus 220 ~~~--~~~~v~--~~d~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~i~i~GG~~~~~~~~~----~~~~~~~ 283 (390)
... +..+++ .||+++++|+.+ ..+|.+|. .+.+++++++|||+||.+....... .......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 307 (376)
T PRK14131 231 IKPGLRTDAVKQGKFTGNNLKWQKL---PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEG 307 (376)
T ss_pred ECCCcCChhheEEEecCCCcceeec---CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccC
Confidence 432 344554 457789999994 45665553 2336778999999999864221000 0000000
Q ss_pred ceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCccccccceeeeCeeEEEEec
Q psy1098 284 WKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVE 356 (390)
Q Consensus 284 ~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~ 356 (390)
......+++||+++++|+.+.. +|.+|..++++.++++|||+||..... ...+|++.++..
T Consensus 308 ~~~~~~~e~yd~~~~~W~~~~~------lp~~r~~~~av~~~~~iyv~GG~~~~~------~~~~~v~~~~~~ 368 (376)
T PRK14131 308 LKKSWSDEIYALVNGKWQKVGE------LPQGLAYGVSVSWNNGVLLIGGETAGG------KAVSDVTLLSWD 368 (376)
T ss_pred CcceeehheEEecCCcccccCc------CCCCccceEEEEeCCEEEEEcCCCCCC------cEeeeEEEEEEc
Confidence 0002357799999999999987 999999999999999999999986432 245788877755
No 14
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.1e-35 Score=274.94 Aligned_cols=245 Identities=20% Similarity=0.377 Sum_probs=193.9
Q ss_pred CCCcEEeeeec-CCCCCCCceeeEEEeCCEEEEEcceeCC-ceeecceEEEEcCcceeEEecCCCCCCCCCCC-CCccce
Q psy1098 60 ATNQWFIPTLK-GDIPPGCAAYGIVVDNTRVLIFGGMVEY-GKYSSDLYELQASKWEWKRLKPKPPRFGSPPC-PRLGHS 136 (390)
Q Consensus 60 ~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~-~r~~~~ 136 (390)
....|..+... +.+|.+|..|++++++++|||+||.... ....+++|+||+.+++|++++++. ..|. .+.+|+
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~p~~~~~~~~ 80 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG----DVPRISCLGVR 80 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC----CCCCCccCceE
Confidence 56779988763 3478999999999999999999998643 345689999999999999987653 1222 345788
Q ss_pred EEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccC--CCCCCCCceeeeEEeeccCCCcEEE
Q psy1098 137 FTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTY--GGLPSPRESHTACSWTDEYKNTKLI 214 (390)
Q Consensus 137 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~~~~~~i~ 214 (390)
+++++++||+|||.... ..++++++||+.+ ++|+.+... ...|.+|..|+++.. +++||
T Consensus 81 ~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~t---~~W~~~~~~~~~~~p~~R~~~~~~~~-----~~~iy 141 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEK-----------REFSDFYSYDTVK---NEWTFLTKLDEEGGPEARTFHSMASD-----ENHVY 141 (341)
T ss_pred EEEECCEEEEECCCCCC-----------CccCcEEEEECCC---CEEEEeccCCCCCCCCCceeeEEEEE-----CCEEE
Confidence 99999999999998654 5577899999986 789986542 123788999999988 89999
Q ss_pred EEcCCCCC-------ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceec
Q psy1098 215 IYGGMSGN-------RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCS 287 (390)
Q Consensus 215 v~GG~~~~-------~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 287 (390)
|+||.+.. .++++++||+++++|+.+...+..|.+|..|++++++++|||+||.......+. . .....
T Consensus 142 v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG---~--~~~~~ 216 (341)
T PLN02153 142 VFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG---K--SDYES 216 (341)
T ss_pred EECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC---c--cceec
Confidence 99998532 257899999999999997655556688999999999999999999753210000 0 00125
Q ss_pred CceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccC
Q psy1098 288 NQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRD 335 (390)
Q Consensus 288 ~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 335 (390)
+++++||+.+++|++++.. +.+|.+|..|++++++++|||+||..
T Consensus 217 ~~v~~yd~~~~~W~~~~~~---g~~P~~r~~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETT---GAKPSARSVFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred CceEEEEcCCCcEEecccc---CCCCCCcceeeeEEECCEEEEECccc
Confidence 7899999999999999752 23788999999999999999999974
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4e-35 Score=287.48 Aligned_cols=247 Identities=18% Similarity=0.321 Sum_probs=208.5
Q ss_pred CCCCCceeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCCC--cccceEEEECCCCcEEeeeecCCCCCCCceeeEE
Q psy1098 6 DDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEG--IVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIV 83 (390)
Q Consensus 6 ~~~~~~~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 83 (390)
+|+...++|..+. ..| .+..|++++++++||++||.... ..++++.||+.+++|..++ .+|.+|..|+++
T Consensus 268 ~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~R~~~~~~ 339 (534)
T PHA03098 268 TNYSPLSEINTII----DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---ELIYPRKNPGVT 339 (534)
T ss_pred ecchhhhhccccc----Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---CCCcccccceEE
Confidence 4667777888875 333 24567899999999999996543 5578999999999998887 788899999999
Q ss_pred EeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCc
Q psy1098 84 VDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPS 163 (390)
Q Consensus 84 ~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~ 163 (390)
+.+++||++||.. .....+++++||+.+++|+..+++ |.+|..|+++.++++||++||.....
T Consensus 340 ~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l-------p~~r~~~~~~~~~~~iYv~GG~~~~~--------- 402 (534)
T PHA03098 340 VFNNRIYVIGGIY-NSISLNTVESWKPGESKWREEPPL-------IFPRYNPCVVNVNNLIYVIGGISKND--------- 402 (534)
T ss_pred EECCEEEEEeCCC-CCEecceEEEEcCCCCceeeCCCc-------CcCCccceEEEECCEEEEECCcCCCC---------
Confidence 9999999999986 345678899999999999998875 58999999999999999999976443
Q ss_pred cccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCC----ccCcEEEEecCCCeEee
Q psy1098 164 YKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN----RLSDLFMLDINSMTWQK 239 (390)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~----~~~~v~~~d~~~~~W~~ 239 (390)
..++++++||+.+ ++|.. ..++|.+|.+|+++.. +++||++||.... .++.+++||+.+++|+.
T Consensus 403 -~~~~~v~~yd~~t---~~W~~---~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 403 -ELLKTVECFSLNT---NKWSK---GSPLPISHYGGCAIYH-----DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred -cccceEEEEeCCC---Ceeee---cCCCCccccCceEEEE-----CCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 4567899999987 79998 4568889999999988 8999999997543 25679999999999999
Q ss_pred cccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 240 PQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 240 ~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
.+.+|.+|..+++++++++|||+||..... ..+++++||+++++|+.+..
T Consensus 471 ---~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-------------~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 471 ---LSSLNFPRINASLCIFNNKIYVVGGDKYEY-------------YINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ---CCCCCcccccceEEEECCEEEEEcCCcCCc-------------ccceeEEEeCCCCEEEecCC
Confidence 557888999999999999999999986421 25789999999999999986
No 16
>KOG0379|consensus
Probab=100.00 E-value=6.8e-35 Score=278.26 Aligned_cols=280 Identities=33% Similarity=0.597 Sum_probs=242.1
Q ss_pred CCCCCCCCCceeeeEEeCCEEEEEccCCCC-ccc--ceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEccee
Q psy1098 20 PAGPQPRPRHGHRAVAIKDLMLVFGGGNEG-IVE--ELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMV 96 (390)
Q Consensus 20 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~--~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 96 (390)
.++..|.+|.+|+++.+++++|||||.... ... +++++|..+..|......+..|.+|.+|.++.++++||+|||..
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 456788999999999999999999996543 223 59999999999999999999999999999999999999999998
Q ss_pred CCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecC
Q psy1098 97 EYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELK 176 (390)
Q Consensus 97 ~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (390)
......++++.||+.+++|..+.+. +.+|.+|.+|+++..++++|||||.+... ...+++|.||+.
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~----~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~----------~~~ndl~i~d~~ 198 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPT----GDPPPPRAGHSATVVGTKLVVFGGIGGTG----------DSLNDLHIYDLE 198 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCc----CCCCCCcccceEEEECCEEEEECCccCcc----------cceeeeeeeccc
Confidence 6555678999999999999998875 45789999999999999999999998874 489999999999
Q ss_pred CCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCC-CC-ccCcEEEEecCCCeEeecccCCCCCCCCceee
Q psy1098 177 SGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMS-GN-RLSDLFMLDINSMTWQKPQILGPQPLPRSLHT 254 (390)
Q Consensus 177 ~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~-~~-~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~ 254 (390)
+ .+|.++...+..|.||.+|+++.+ +++++|+||.. +. .++++|.+|+.+.+|.++...+..|.+|..|+
T Consensus 199 ~---~~W~~~~~~g~~P~pR~gH~~~~~-----~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~ 270 (482)
T KOG0379|consen 199 T---STWSELDTQGEAPSPRYGHAMVVV-----GNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHS 270 (482)
T ss_pred c---ccceecccCCCCCCCCCCceEEEE-----CCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceee
Confidence 8 579999999999999999999999 89999999876 44 48999999999999999888899999999999
Q ss_pred EEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCC----EEEE
Q psy1098 255 ACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINS----RMYI 330 (390)
Q Consensus 255 ~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~----~l~v 330 (390)
.+..+++++|+||..... . ....++|.||+++..|.++.... ...|.+|..|+.+.... .+.+
T Consensus 271 ~~~~~~~~~l~gG~~~~~--~---------~~l~~~~~l~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (482)
T KOG0379|consen 271 LTVSGDHLLLFGGGTDPK--Q---------EPLGDLYGLDLETLVWSKVESVG--VVRPSPRLGHAAELIDELGKDGLGI 337 (482)
T ss_pred eEEECCEEEEEcCCcccc--c---------ccccccccccccccceeeeeccc--cccccccccccceeeccCCccceee
Confidence 999999999999986430 0 02689999999999999998743 12677899998887743 3555
Q ss_pred Eecc
Q psy1098 331 WSGR 334 (390)
Q Consensus 331 ~GG~ 334 (390)
+||.
T Consensus 338 ~~~~ 341 (482)
T KOG0379|consen 338 LGGN 341 (482)
T ss_pred ecCc
Confidence 5554
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.4e-34 Score=280.13 Aligned_cols=273 Identities=20% Similarity=0.284 Sum_probs=217.0
Q ss_pred CEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEE
Q psy1098 38 DLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKR 117 (390)
Q Consensus 38 ~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~ 117 (390)
..+++.||.. .....+..|+...++|..+. ..|. +..|++++.+++||++||........+++++||+.+++|..
T Consensus 251 ~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (534)
T PHA03098 251 SIIYIHITMS-IFTYNYITNYSPLSEINTII---DIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK 325 (534)
T ss_pred cceEeecccc-hhhceeeecchhhhhccccc---Cccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE
Confidence 4455656644 23345667888888998875 3342 44568889999999999997666667899999999999999
Q ss_pred ecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCc
Q psy1098 118 LKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRE 197 (390)
Q Consensus 118 ~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~ 197 (390)
++++ |.+|..|+++.++++||++||.... ...+++++||+.+ ++|.. .+++|.+|.
T Consensus 326 ~~~~-------~~~R~~~~~~~~~~~lyv~GG~~~~-----------~~~~~v~~yd~~~---~~W~~---~~~lp~~r~ 381 (534)
T PHA03098 326 VPEL-------IYPRKNPGVTVFNNRIYVIGGIYNS-----------ISLNTVESWKPGE---SKWRE---EPPLIFPRY 381 (534)
T ss_pred CCCC-------CcccccceEEEECCEEEEEeCCCCC-----------EecceEEEEcCCC---Cceee---CCCcCcCCc
Confidence 8775 4789999999999999999998743 5677899999886 79998 556889999
Q ss_pred eeeeEEeeccCCCcEEEEEcCCCCC--ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCcc
Q psy1098 198 SHTACSWTDEYKNTKLIIYGGMSGN--RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDE 275 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~ 275 (390)
.|+++.. +++||++||.... .++++++||+.+++|+. ..++|.+|..|+++.++++|||+||.+.....
T Consensus 382 ~~~~~~~-----~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~- 452 (534)
T PHA03098 382 NPCVVNV-----NNLIYVIGGISKNDELLKTVECFSLNTNKWSK---GSPLPISHYGGCAIYHDGKIYVIGGISYIDNI- 452 (534)
T ss_pred cceEEEE-----CCEEEEECCcCCCCcccceEEEEeCCCCeeee---cCCCCccccCceEEEECCEEEEECCccCCCCC-
Confidence 9999988 9999999996432 36889999999999999 56789999999999999999999997543211
Q ss_pred ccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCcc--ccccceeeeCeeEEE
Q psy1098 276 SRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYK--KAWNNQVCCKDLWYL 353 (390)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~--~~~~~~~~~~d~w~~ 353 (390)
...+.+++||+.+++|+.++. +|.+|.+++++.++++||++||.++.. .....+.+.++.|..
T Consensus 453 ---------~~~~~v~~yd~~~~~W~~~~~------~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 453 ---------KVYNIVESYNPVTNKWTELSS------LNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred ---------cccceEEEecCCCCceeeCCC------CCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 014569999999999999987 888999999999999999999987432 223334456777877
Q ss_pred EecCCCCCCc
Q psy1098 354 EVEKPGPPGR 363 (390)
Q Consensus 354 ~~~~~~~~~~ 363 (390)
....|+....
T Consensus 518 ~~~~p~~~~~ 527 (534)
T PHA03098 518 FCKFPKVIGS 527 (534)
T ss_pred cCCCcccccc
Confidence 6655554443
No 18
>KOG1230|consensus
Probab=100.00 E-value=3.2e-33 Score=244.67 Aligned_cols=260 Identities=27% Similarity=0.513 Sum_probs=215.2
Q ss_pred CCCCCCceeeeEEeC--CEEEEEccC--CCC---cccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeC-CEEEEEcc
Q psy1098 23 PQPRPRHGHRAVAIK--DLMLVFGGG--NEG---IVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDN-TRVLIFGG 94 (390)
Q Consensus 23 ~~p~~r~~~~~~~~~--~~iyv~GG~--~~~---~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG 94 (390)
+.|++|.++++++-. +.+++|||. +.+ ..+++|.||..+++|+.+..+ ..|.||+.|.++++. +.+|+|||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence 568899999998864 569999994 222 568999999999999998765 567888888887775 89999999
Q ss_pred eeCCc-----eeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccc
Q psy1098 95 MVEYG-----KYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDD 169 (390)
Q Consensus 95 ~~~~~-----~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~ 169 (390)
.-... ...+|+|.|+..+++|+++... ..|.+|.+|.+++...+|++|||+..... +|.|+||
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~-----g~PS~RSGHRMvawK~~lilFGGFhd~nr-------~y~YyND 208 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-----GGPSPRSGHRMVAWKRQLILFGGFHDSNR-------DYIYYND 208 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccC-----CCCCCCccceeEEeeeeEEEEcceecCCC-------ceEEeee
Confidence 85322 1268999999999999999863 37899999999999999999999987643 3489999
Q ss_pred eeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCC----------CCccCcEEEEecCC-----
Q psy1098 170 FYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMS----------GNRLSDLFMLDINS----- 234 (390)
Q Consensus 170 ~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~----------~~~~~~v~~~d~~~----- 234 (390)
+|.||+.+ -+|..+.+.+..|.+|++|++.+.| ++.|||.||++ |...+++|.+++.+
T Consensus 209 vy~FdLdt---ykW~Klepsga~PtpRSGcq~~vtp----qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dK 281 (521)
T KOG1230|consen 209 VYAFDLDT---YKWSKLEPSGAGPTPRSGCQFSVTP----QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDK 281 (521)
T ss_pred eEEEeccc---eeeeeccCCCCCCCCCCcceEEecC----CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcc
Confidence 99999998 6999998877789999999999886 89999999984 23478899999998
Q ss_pred CeEeecccCCCCCCCCceeeEEEEC-CEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccc
Q psy1098 235 MTWQKPQILGPQPLPRSLHTACVIG-DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVE 306 (390)
Q Consensus 235 ~~W~~~~~~~~~p~~r~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~ 306 (390)
..|+++.+.+..|.||.++++++.. ++-|.|||......... ... ..|.+++|.||+..++|...+..
T Consensus 282 w~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE--sl~--g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 282 WVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE--SLS--GEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred eeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch--hhh--hhhhhhhhheecccchhhHhhhc
Confidence 7899999999999999999999985 59999999987432221 111 23589999999999999876543
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.5e-32 Score=250.71 Aligned_cols=226 Identities=19% Similarity=0.309 Sum_probs=178.9
Q ss_pred eeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCCC-cccceEEEECCCCcEE-eeeecCCCCCCCceeeEEEeCCEE
Q psy1098 12 YRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEG-IVEELHVFNTATNQWF-IPTLKGDIPPGCAAYGIVVDNTRV 89 (390)
Q Consensus 12 ~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~i 89 (390)
.+|..++ .+|.+|..+++++++++||++||.+.. ..+++++||+.+++|. .....+++|.+|..|++++++++|
T Consensus 51 ~~W~~~~----~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~i 126 (323)
T TIGR03548 51 LKWVKDG----QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTL 126 (323)
T ss_pred eeEEEcc----cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEE
Confidence 4899997 889999988899999999999996543 5689999999999983 112223789999999999999999
Q ss_pred EEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccc
Q psy1098 90 LIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDD 169 (390)
Q Consensus 90 yv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~ 169 (390)
|++||... ....+++++||+.+++|+++++++ ..+|..|++++++++|||+||.+.. ...+
T Consensus 127 Yv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~p------~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~ 187 (323)
T TIGR03548 127 YVGGGNRN-GKPSNKSYLFNLETQEWFELPDFP------GEPRVQPVCVKLQNELYVFGGGSNI------------AYTD 187 (323)
T ss_pred EEEeCcCC-CccCceEEEEcCCCCCeeECCCCC------CCCCCcceEEEECCEEEEEcCCCCc------------cccc
Confidence 99999753 344689999999999999998753 2468999999999999999997642 2456
Q ss_pred eeeeecCCCceeeeeccccCC--CCCCCCceeeeEEeeccCCCcEEEEEcCCCCCc------------------------
Q psy1098 170 FYTLELKSGHTTVWDMPGTYG--GLPSPRESHTACSWTDEYKNTKLIIYGGMSGNR------------------------ 223 (390)
Q Consensus 170 ~~~~d~~~~~~~~W~~~~~~~--~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~------------------------ 223 (390)
+++||+.+ ++|+.+.... ..|..+..++++.+ .+++||++||.++..
T Consensus 188 ~~~yd~~~---~~W~~~~~~~~~~~p~~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
T TIGR03548 188 GYKYSPKK---NQWQKVADPTTDSEPISLLGAASIKI----NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYF 260 (323)
T ss_pred eEEEecCC---CeeEECCCCCCCCCceeccceeEEEE----CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHh
Confidence 88999987 7999876432 23444444554444 178999999986321
Q ss_pred ---------cCcEEEEecCCCeEeecccCCCCC-CCCceeeEEEECCEEEEEcCccc
Q psy1098 224 ---------LSDLFMLDINSMTWQKPQILGPQP-LPRSLHTACVIGDRMFIFGGWVP 270 (390)
Q Consensus 224 ---------~~~v~~~d~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~i~i~GG~~~ 270 (390)
.+++++||+.+++|+.+ +.+| .+|..++++.++++||++||...
T Consensus 261 ~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 261 LKPPEWYNWNRKILIYNVRTGKWKSI---GNSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred CCCccccCcCceEEEEECCCCeeeEc---ccccccccCchheEEECCEEEEEecccc
Confidence 25799999999999994 4565 58999999999999999999743
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.6e-32 Score=252.29 Aligned_cols=233 Identities=20% Similarity=0.343 Sum_probs=179.2
Q ss_pred CCCCC--CCceeEEecCCCCCCCC-CCCceeeeEEeCCEEEEEccCCCC-------cccceEEEECCCCcEEeeeecCCC
Q psy1098 4 LSDDN--CPVYRWRRIDDPAGPQP-RPRHGHRAVAIKDLMLVFGGGNEG-------IVEELHVFNTATNQWFIPTLKGDI 73 (390)
Q Consensus 4 ~~~~~--~~~~~W~~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~~~d~~~~~W~~~~~~~~~ 73 (390)
++.+| +.+++|++++ .+| .+|..|++++++++|||+||.... ..+++++||+.+++|+.++. .+
T Consensus 31 ~~~~d~~~~~~~W~~l~----~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~ 104 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKIA----DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RS 104 (346)
T ss_pred eEEEECCCCCCCceECC----CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CC
Confidence 34455 3578999998 788 589999999999999999996431 35789999999999999872 35
Q ss_pred CCCCceeeEE-EeCCEEEEEcceeCCc---------------------------------eeecceEEEEcCcceeEEec
Q psy1098 74 PPGCAAYGIV-VDNTRVLIFGGMVEYG---------------------------------KYSSDLYELQASKWEWKRLK 119 (390)
Q Consensus 74 p~~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~v~~~d~~~~~W~~~~ 119 (390)
|.+|.+++++ +.+++||++||..... ...+++++||+.+++|+.++
T Consensus 105 p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 105 PVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG 184 (346)
T ss_pred CCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc
Confidence 6777777766 7899999999985310 01378999999999999998
Q ss_pred CCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCC---
Q psy1098 120 PKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPR--- 196 (390)
Q Consensus 120 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r--- 196 (390)
+++ ..+|.+++++.++++|||+||..... ....+++.|++. +..++|..+. .+|.+|
T Consensus 185 ~~p------~~~r~~~~~~~~~~~iyv~GG~~~~~----------~~~~~~~~y~~~-~~~~~W~~~~---~m~~~r~~~ 244 (346)
T TIGR03547 185 ENP------FLGTAGSAIVHKGNKLLLINGEIKPG----------LRTAEVKQYLFT-GGKLEWNKLP---PLPPPKSSS 244 (346)
T ss_pred cCC------CCcCCCceEEEECCEEEEEeeeeCCC----------ccchheEEEEec-CCCceeeecC---CCCCCCCCc
Confidence 753 13688999999999999999976431 122346666653 2236899854 455543
Q ss_pred ----ceeeeEEeeccCCCcEEEEEcCCCCC------------------ccCcEEEEecCCCeEeecccCCCCCCCCceee
Q psy1098 197 ----ESHTACSWTDEYKNTKLIIYGGMSGN------------------RLSDLFMLDINSMTWQKPQILGPQPLPRSLHT 254 (390)
Q Consensus 197 ----~~~~~~~~~~~~~~~~i~v~GG~~~~------------------~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~ 254 (390)
..|+++.+ +++|||+||.... ....+++||+++++|+. ..++|.+|..++
T Consensus 245 ~~~~~~~~a~~~-----~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~---~~~lp~~~~~~~ 316 (346)
T TIGR03547 245 QEGLAGAFAGIS-----NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK---VGKLPQGLAYGV 316 (346)
T ss_pred cccccEEeeeEE-----CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc---cCCCCCCceeeE
Confidence 45556677 8999999997521 12358899999999999 568899999999
Q ss_pred EEEECCEEEEEcCccc
Q psy1098 255 ACVIGDRMFIFGGWVP 270 (390)
Q Consensus 255 ~~~~~~~i~i~GG~~~ 270 (390)
+++++++|||+||.+.
T Consensus 317 ~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 317 SVSWNNGVLLIGGENS 332 (346)
T ss_pred EEEcCCEEEEEeccCC
Confidence 9899999999999854
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.5e-31 Score=256.88 Aligned_cols=211 Identities=15% Similarity=0.259 Sum_probs=180.6
Q ss_pred eEEeCCEEEEEccCCC-CcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcC
Q psy1098 33 AVAIKDLMLVFGGGNE-GIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQAS 111 (390)
Q Consensus 33 ~~~~~~~iyv~GG~~~-~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~ 111 (390)
.+.+++.||++||.+. ...+.+++||+.+++|..++ ++|.+|..+++++.+++||++||.... +.+++||+.
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC----CceEEEECC
Confidence 3458999999999654 35678999999999999998 789999999999999999999997432 568999999
Q ss_pred cceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCC
Q psy1098 112 KWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGG 191 (390)
Q Consensus 112 ~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~ 191 (390)
+++|..++++ |.+|..|++++++++||++||.... .+.+..||+.+ ++|+. .++
T Consensus 340 ~n~W~~~~~l-------~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~---~~W~~---~~~ 393 (480)
T PHA02790 340 DAAWVNMPSL-------LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNH---DQWQF---GPS 393 (480)
T ss_pred CCeEEECCCC-------CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCC---CEEEe---CCC
Confidence 9999999885 4899999999999999999997532 24577888876 79998 556
Q ss_pred CCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccC
Q psy1098 192 LPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPI 271 (390)
Q Consensus 192 ~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~ 271 (390)
++.+|..++++++ +++||++||. +++||+++++|+. .++++.+|..+++++++++||++||.+..
T Consensus 394 m~~~r~~~~~~~~-----~~~IYv~GG~-------~e~ydp~~~~W~~---~~~m~~~r~~~~~~v~~~~IYviGG~~~~ 458 (480)
T PHA02790 394 TYYPHYKSCALVF-----GRRLFLVGRN-------AEFYCESSNTWTL---IDDPIYPRDNPELIIVDNKLLLIGGFYRG 458 (480)
T ss_pred CCCccccceEEEE-----CCEEEEECCc-------eEEecCCCCcEeE---cCCCCCCccccEEEEECCEEEEECCcCCC
Confidence 8899999999888 9999999984 5789999999999 56889999999999999999999997532
Q ss_pred CCccccccccccceecCceEEeecCCCeeeecc
Q psy1098 272 LKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304 (390)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~ 304 (390)
. ..+.+++||+++++|+...
T Consensus 459 ~-------------~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 459 S-------------YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred c-------------ccceEEEEECCCCeEEecC
Confidence 1 2468999999999998754
No 22
>KOG0379|consensus
Probab=100.00 E-value=4.9e-32 Score=258.69 Aligned_cols=231 Identities=31% Similarity=0.612 Sum_probs=202.7
Q ss_pred cCCCCCCCceeeEEEeCCEEEEEcceeCCceeec-ceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEc
Q psy1098 70 KGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFG 148 (390)
Q Consensus 70 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 148 (390)
.+..|.+|+.|+++.+++++|+|||......... ++|++|.++..|...... +..|.+|++|+++.++++||+||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~----g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAAT----GDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCccccccccc----CCCCCcccceeEEEECCeEEEEc
Confidence 4567899999999999999999999975444333 699999999999876653 66789999999999999999999
Q ss_pred CccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCc--cCc
Q psy1098 149 GLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNR--LSD 226 (390)
Q Consensus 149 G~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~ 226 (390)
|.+... ..+++++.||+.+ ++|..+...+..|.+|.+|+++.+ ++++|||||..... .++
T Consensus 130 G~~~~~----------~~~~~l~~~d~~t---~~W~~l~~~~~~P~~r~~Hs~~~~-----g~~l~vfGG~~~~~~~~nd 191 (482)
T KOG0379|consen 130 GTDKKY----------RNLNELHSLDLST---RTWSLLSPTGDPPPPRAGHSATVV-----GTKLVVFGGIGGTGDSLND 191 (482)
T ss_pred cccCCC----------CChhheEeccCCC---CcEEEecCcCCCCCCcccceEEEE-----CCEEEEECCccCcccceee
Confidence 998632 6688999999998 799999988889999999999999 89999999987554 899
Q ss_pred EEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccc
Q psy1098 227 LFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVE 306 (390)
Q Consensus 227 v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~ 306 (390)
+|+||+++.+|.++...+..|.||.+|++++++++++|+||.+... .+.+++|+||+.+.+|.++..
T Consensus 192 l~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~------------~~l~D~~~ldl~~~~W~~~~~- 258 (482)
T KOG0379|consen 192 LHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD------------VYLNDVHILDLSTWEWKLLPT- 258 (482)
T ss_pred eeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCC------------ceecceEeeecccceeeeccc-
Confidence 9999999999999999999999999999999999999999976211 358999999999999997765
Q ss_pred cccCCCCCCCCCcceeeeCCEEEEEeccCCc
Q psy1098 307 VTDDFLPKPRAGHCASVINSRMYIWSGRDDY 337 (390)
Q Consensus 307 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 337 (390)
.+..|.+|++|.++..+++++++||....
T Consensus 259 --~g~~p~~R~~h~~~~~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 259 --GGDLPSPRSGHSLTVSGDHLLLFGGGTDP 287 (482)
T ss_pred --cCCCCCCcceeeeEEECCEEEEEcCCccc
Confidence 34499999999999889999999998753
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.2e-31 Score=250.62 Aligned_cols=252 Identities=21% Similarity=0.307 Sum_probs=188.1
Q ss_pred CCCCC--CceeEEecCCCCCCCC-CCCceeeeEEeCCEEEEEccCCC-------CcccceEEEECCCCcEEeeeecCCCC
Q psy1098 5 SDDNC--PVYRWRRIDDPAGPQP-RPRHGHRAVAIKDLMLVFGGGNE-------GIVEELHVFNTATNQWFIPTLKGDIP 74 (390)
Q Consensus 5 ~~~~~--~~~~W~~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~-------~~~~~~~~~d~~~~~W~~~~~~~~~p 74 (390)
+.+|. .+++|..++ .+| .+|.+|++++++++|||+||... ...+++++||+.+++|+.++. ..|
T Consensus 53 ~~~d~~~~~~~W~~l~----~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p 126 (376)
T PRK14131 53 YKLDLNAPSKGWTKIA----AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSP 126 (376)
T ss_pred EEEECCCCCCCeEECC----cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCC
Confidence 34454 357899997 566 48999999999999999999653 235789999999999999873 246
Q ss_pred CCCceeeEEE-eCCEEEEEcceeCCc---------------------------------eeecceEEEEcCcceeEEecC
Q psy1098 75 PGCAAYGIVV-DNTRVLIFGGMVEYG---------------------------------KYSSDLYELQASKWEWKRLKP 120 (390)
Q Consensus 75 ~~r~~~~~~~-~~~~iyv~GG~~~~~---------------------------------~~~~~v~~~d~~~~~W~~~~~ 120 (390)
.++.+|++++ .+++||++||..... ...+++++||+.+++|..+.+
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~ 206 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE 206 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc
Confidence 7777787766 899999999975310 024789999999999999876
Q ss_pred CCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCc---
Q psy1098 121 KPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRE--- 197 (390)
Q Consensus 121 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~--- 197 (390)
++ ..+|.+|+++.++++|||+||..... ....+++.+++ ++..++|..+. .+|.+|.
T Consensus 207 ~p------~~~~~~~a~v~~~~~iYv~GG~~~~~----------~~~~~~~~~~~-~~~~~~W~~~~---~~p~~~~~~~ 266 (376)
T PRK14131 207 SP------FLGTAGSAVVIKGNKLWLINGEIKPG----------LRTDAVKQGKF-TGNNLKWQKLP---DLPPAPGGSS 266 (376)
T ss_pred CC------CCCCCcceEEEECCEEEEEeeeECCC----------cCChhheEEEe-cCCCcceeecC---CCCCCCcCCc
Confidence 53 23788889999999999999975432 12234555443 12237899854 4555543
Q ss_pred -----eeeeEEeeccCCCcEEEEEcCCCCC---------------c---cCcEEEEecCCCeEeecccCCCCCCCCceee
Q psy1098 198 -----SHTACSWTDEYKNTKLIIYGGMSGN---------------R---LSDLFMLDINSMTWQKPQILGPQPLPRSLHT 254 (390)
Q Consensus 198 -----~~~~~~~~~~~~~~~i~v~GG~~~~---------------~---~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~ 254 (390)
.+.+++. +++|||+||.... . ...+++||+++++|+. .+.+|.+|..++
T Consensus 267 ~~~~~~~~a~~~-----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~---~~~lp~~r~~~~ 338 (376)
T PRK14131 267 QEGVAGAFAGYS-----NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK---VGELPQGLAYGV 338 (376)
T ss_pred CCccceEeceeE-----CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc---cCcCCCCccceE
Confidence 2334555 8999999997521 0 1246789999999998 568999999999
Q ss_pred EEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeee
Q psy1098 255 ACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWED 302 (390)
Q Consensus 255 ~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 302 (390)
+++++++|||+||..... ...+++++|+++.+.++.
T Consensus 339 av~~~~~iyv~GG~~~~~------------~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 339 SVSWNNGVLLIGGETAGG------------KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEeCCEEEEEcCCCCCC------------cEeeeEEEEEEcCCEEEE
Confidence 999999999999975422 126799999998887764
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=247.23 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=173.7
Q ss_pred EEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCC
Q psy1098 82 IVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPT 161 (390)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 161 (390)
.+..++.||++||... ....+.+++||+.+++|..+++| +.+|..+++++++++||++||....
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~~m-------~~~r~~~~~v~~~~~iYviGG~~~~-------- 330 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPPM-------NSPRLYASGVPANNKLYVVGGLPNP-------- 330 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECCCC-------CchhhcceEEEECCEEEEECCcCCC--------
Confidence 3458899999999853 23567899999999999999886 4889999999999999999997531
Q ss_pred CccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecc
Q psy1098 162 PSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQ 241 (390)
Q Consensus 162 ~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~ 241 (390)
+.+.+||+.+ ++|.. .+++|.+|..+++++. +++||++||.++. .+.+++||+.+++|+.
T Consensus 331 ------~sve~ydp~~---n~W~~---~~~l~~~r~~~~~~~~-----~g~IYviGG~~~~-~~~ve~ydp~~~~W~~-- 390 (480)
T PHA02790 331 ------TSVERWFHGD---AAWVN---MPSLLKPRCNPAVASI-----NNVIYVIGGHSET-DTTTEYLLPNHDQWQF-- 390 (480)
T ss_pred ------CceEEEECCC---CeEEE---CCCCCCCCcccEEEEE-----CCEEEEecCcCCC-CccEEEEeCCCCEEEe--
Confidence 2477888765 78998 5568999999999998 9999999998643 3678999999999999
Q ss_pred cCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcce
Q psy1098 242 ILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCA 321 (390)
Q Consensus 242 ~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~ 321 (390)
.++++.+|..+++++++++||++||. +.+||+++++|+.+++ +|.+|.++++
T Consensus 391 -~~~m~~~r~~~~~~~~~~~IYv~GG~---------------------~e~ydp~~~~W~~~~~------m~~~r~~~~~ 442 (480)
T PHA02790 391 -GPSTYYPHYKSCALVFGRRLFLVGRN---------------------AEFYCESSNTWTLIDD------PIYPRDNPEL 442 (480)
T ss_pred -CCCCCCccccceEEEECCEEEEECCc---------------------eEEecCCCCcEeEcCC------CCCCccccEE
Confidence 67899999999999999999999983 3579999999999988 9999999999
Q ss_pred eeeCCEEEEEeccCCcc--ccccceeeeCeeEEE
Q psy1098 322 SVINSRMYIWSGRDDYK--KAWNNQVCCKDLWYL 353 (390)
Q Consensus 322 ~~~~~~l~v~GG~~~~~--~~~~~~~~~~d~w~~ 353 (390)
++++++||++||.++.. ...+.+.+..|.|..
T Consensus 443 ~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 443 IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 99999999999986432 223345556677754
No 25
>KOG1230|consensus
Probab=99.97 E-value=1.6e-30 Score=227.88 Aligned_cols=265 Identities=23% Similarity=0.475 Sum_probs=209.5
Q ss_pred CCCCCCceeeEEEe--CCEEEEEcceeCCc---eeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEEC-CEEE
Q psy1098 72 DIPPGCAAYGIVVD--NTRVLIFGGMVEYG---KYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIG-NKVY 145 (390)
Q Consensus 72 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~---~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~-~~l~ 145 (390)
.+|.+|..+++++. .+.|++|||.--++ .+.+++|.||+.++.|.++... ..|.||..|.++++. +.++
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-----n~P~pRsshq~va~~s~~l~ 136 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-----NAPPPRSSHQAVAVPSNILW 136 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-----CCcCCCccceeEEeccCeEE
Confidence 56888999888765 45799999986444 3579999999999999998763 468999999999985 8999
Q ss_pred EEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCC---
Q psy1098 146 LFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN--- 222 (390)
Q Consensus 146 v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~--- 222 (390)
+|||--.. .+++.|.-..|+|+||+.+ ++|+++... ..|.+|++|.++++ ..+|+||||+...
T Consensus 137 ~fGGEfaS-----Pnq~qF~HYkD~W~fd~~t---rkweql~~~-g~PS~RSGHRMvaw-----K~~lilFGGFhd~nr~ 202 (521)
T KOG1230|consen 137 LFGGEFAS-----PNQEQFHHYKDLWLFDLKT---RKWEQLEFG-GGPSPRSGHRMVAW-----KRQLILFGGFHDSNRD 202 (521)
T ss_pred EeccccCC-----cchhhhhhhhheeeeeecc---chheeeccC-CCCCCCccceeEEe-----eeeEEEEcceecCCCc
Confidence 99996543 2333344567999999998 799998854 48999999999999 9999999997533
Q ss_pred --ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE-CCEEEEEcCcccCCCccccccccccceecCceEEeecCC--
Q psy1098 223 --RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI-GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPE-- 297 (390)
Q Consensus 223 --~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-- 297 (390)
.+|+||+||+++-+|+++.+.+.-|.||+++.+++. ++.|||+||++... ....-+......++|.++++.
T Consensus 203 y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~----~kK~~dKG~~hsDmf~L~p~~~~ 278 (521)
T KOG1230|consen 203 YIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR----VKKDVDKGTRHSDMFLLKPEDGR 278 (521)
T ss_pred eEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh----hhhhhhcCceeeeeeeecCCcCC
Confidence 279999999999999999987788999999999999 89999999997543 112223334578999999988
Q ss_pred ---CeeeecccccccCCCCCCCCCcceeee-CCEEEEEeccCCccc--cccceeeeCeeEEEEecCCCCCC
Q psy1098 298 ---MTWEDLSVEVTDDFLPKPRAGHCASVI-NSRMYIWSGRDDYKK--AWNNQVCCKDLWYLEVEKPGPPG 362 (390)
Q Consensus 298 ---~~W~~v~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~--~~~~~~~~~d~w~~~~~~~~~~~ 362 (390)
..|+++.+. +-.|.+|.++++++. +++-|.|||+-.... ........||++-|+++...++.
T Consensus 279 ~dKw~W~kvkp~---g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 279 EDKWVWTKVKPS---GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred CcceeEeeccCC---CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence 789999874 337889999999988 569999999744221 11223356888888876555544
No 26
>KOG4152|consensus
Probab=99.96 E-value=1.5e-28 Score=220.63 Aligned_cols=234 Identities=27% Similarity=0.498 Sum_probs=196.7
Q ss_pred CCcEEeeee-cCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEE
Q psy1098 61 TNQWFIPTL-KGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTL 139 (390)
Q Consensus 61 ~~~W~~~~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~ 139 (390)
--.|+.+.. .|+.|.+|++|-.+++.+-|.+|||.+ .....++.+||..+++|..-.- .++.|.+.+.|.++.
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN--EGiiDELHvYNTatnqWf~Pav----rGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN--EGIIDELHVYNTATNQWFAPAV----RGDIPPGCAAFGFVC 89 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCc--ccchhhhhhhccccceeecchh----cCCCCCchhhcceEe
Confidence 346877765 467899999999999999999999985 4467889999999999975443 477889999999999
Q ss_pred ECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeecccc----CCCCCCCCceeeeEEeeccCCCcEEEE
Q psy1098 140 IGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGT----YGGLPSPRESHTACSWTDEYKNTKLII 215 (390)
Q Consensus 140 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~----~~~~p~~r~~~~~~~~~~~~~~~~i~v 215 (390)
.+.+||+|||+...+ +|.||+|.+.... -.|.++++ .+..|.+|.+|+...+ .++-|+
T Consensus 90 dGtrilvFGGMvEYG----------kYsNdLYELQasR---WeWkrlkp~~p~nG~pPCPRlGHSFsl~-----gnKcYl 151 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYG----------KYSNDLYELQASR---WEWKRLKPKTPKNGPPPCPRLGHSFSLV-----GNKCYL 151 (830)
T ss_pred cCceEEEEccEeeec----------cccchHHHhhhhh---hhHhhcCCCCCCCCCCCCCccCceeEEe-----ccEeEE
Confidence 999999999999877 8999998776543 46776543 5568899999999999 899999
Q ss_pred EcCCCCC----------ccCcEEEEecCCC----eEeecccCCCCCCCCceeeEEEE------CCEEEEEcCcccCCCcc
Q psy1098 216 YGGMSGN----------RLSDLFMLDINSM----TWQKPQILGPQPLPRSLHTACVI------GDRMFIFGGWVPILKDE 275 (390)
Q Consensus 216 ~GG~~~~----------~~~~v~~~d~~~~----~W~~~~~~~~~p~~r~~~~~~~~------~~~i~i~GG~~~~~~~~ 275 (390)
|||..+. .++|+|++++.-+ .|..+...+..|.+|..|.++++ ..+|||+||.++..
T Consensus 152 FGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R--- 228 (830)
T KOG4152|consen 152 FGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR--- 228 (830)
T ss_pred eccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc---
Confidence 9997421 2789999998744 49998888999999999999998 24799999997643
Q ss_pred ccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccC
Q psy1098 276 SRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRD 335 (390)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 335 (390)
..++|.+|+++.+|.+.... +-.|.+|.-|++..+++|+|||||+-
T Consensus 229 -----------LgDLW~Ldl~Tl~W~kp~~~---G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 229 -----------LGDLWTLDLDTLTWNKPSLS---GVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred -----------ccceeEEecceeeccccccc---CCCCCCcccccceeecceeEEeccee
Confidence 78999999999999998874 33788999999999999999999973
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=1.3e-18 Score=151.35 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=201.7
Q ss_pred CCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEECC--CCcEEeeeecCCCC-CCCceeeEEEeCCEEEEEcceeCCc
Q psy1098 23 PQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTA--TNQWFIPTLKGDIP-PGCAAYGIVVDNTRVLIFGGMVEYG 99 (390)
Q Consensus 23 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~ 99 (390)
.+|.+-..-+.+.+++.+||-=|.. -...+..|+. ...|+.++ ..| .+|.....++++++||+|||.....
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~---G~afy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~ 105 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSA---GTAFYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSV 105 (381)
T ss_pred CCCccccccccceecceEEEEeccC---CccceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCC
Confidence 5666666667788899999876621 1456777774 46799998 555 6799999999999999999986332
Q ss_pred ----eeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECC-EEEEEcCccCCCCCC-----------------
Q psy1098 100 ----KYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGN-KVYLFGGLANSGGDE----------------- 157 (390)
Q Consensus 100 ----~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~----------------- 157 (390)
+..+++|+||+..++|+++... .|....+++++.+++ +++++||.+....+.
T Consensus 106 ~~~~~~~nd~Y~y~p~~nsW~kl~t~------sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~ 179 (381)
T COG3055 106 SSSPQVFNDAYRYDPSTNSWHKLDTR------SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDK 179 (381)
T ss_pred CCCceEeeeeEEecCCCChhheeccc------cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHH
Confidence 4579999999999999999865 357788888888876 999999987543221
Q ss_pred ------CCCCCccccccceeeeecCCCceeeeeccccCCCCCC-CCceeeeEEeeccCCCcEEEEEcCC--CCCccCcEE
Q psy1098 158 ------TKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPS-PRESHTACSWTDEYKNTKLIIYGGM--SGNRLSDLF 228 (390)
Q Consensus 158 ------~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~v~ 228 (390)
....++|.+..+++.|++.+ +.|+. .+..|. ++++++.+.- ++++.++-|. .+.+...++
T Consensus 180 i~~~yf~~~~~dy~~n~ev~sy~p~~---n~W~~---~G~~pf~~~aGsa~~~~-----~n~~~lInGEiKpGLRt~~~k 248 (381)
T COG3055 180 IIAHYFDKKAEDYFFNKEVLSYDPST---NQWRN---LGENPFYGNAGSAVVIK-----GNKLTLINGEIKPGLRTAEVK 248 (381)
T ss_pred HHHHHhCCCHHHhccccccccccccc---chhhh---cCcCcccCccCcceeec-----CCeEEEEcceecCCcccccee
Confidence 11224567788899999887 78998 444443 4555444433 7778888885 355667777
Q ss_pred EEecC--CCeEeecccCCCCCCC-------CceeeEEEECCEEEEEcCcccCCCcc-----cccccc-ccceecCceEEe
Q psy1098 229 MLDIN--SMTWQKPQILGPQPLP-------RSLHTACVIGDRMFIFGGWVPILKDE-----SRSLHE-KEWKCSNQLACL 293 (390)
Q Consensus 229 ~~d~~--~~~W~~~~~~~~~p~~-------r~~~~~~~~~~~i~i~GG~~~~~~~~-----~~~~~~-~~~~~~~~~~~~ 293 (390)
+++.. ..+|..+. .+|.+ ..++-.-..++.+++.||.+...... .-..+. -.....++||+|
T Consensus 249 ~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~ 325 (381)
T COG3055 249 QADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIF 325 (381)
T ss_pred EEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEE
Confidence 77765 56799953 33332 33334444578899999986533211 001111 122236899999
Q ss_pred ecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCccc
Q psy1098 294 HLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKK 339 (390)
Q Consensus 294 d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~ 339 (390)
| .+.|+.+.. +|.++.+.+++..+++||++||.+.-+.
T Consensus 326 d--~g~Wk~~Ge------Lp~~l~YG~s~~~nn~vl~IGGE~~~Gk 363 (381)
T COG3055 326 D--NGSWKIVGE------LPQGLAYGVSLSYNNKVLLIGGETSGGK 363 (381)
T ss_pred c--CCceeeecc------cCCCccceEEEecCCcEEEEccccCCCe
Confidence 8 999999998 9999999999999999999999875543
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=4.1e-17 Score=142.10 Aligned_cols=229 Identities=19% Similarity=0.368 Sum_probs=166.7
Q ss_pred CceeEEecCCCCCCCC-CCCceeeeEEeCCEEEEEccCCC------CcccceEEEECCCCcEEeeeecCCCCCCCceeeE
Q psy1098 10 PVYRWRRIDDPAGPQP-RPRHGHRAVAIKDLMLVFGGGNE------GIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGI 82 (390)
Q Consensus 10 ~~~~W~~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~ 82 (390)
....|++++. .| .+|.+..+++++++||+|||... +..+++|.||+..++|+++.+ ..|....++++
T Consensus 68 ~~k~W~~~a~----FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~ 141 (381)
T COG3055 68 PGKGWTKIAD----FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGAST 141 (381)
T ss_pred CCCCceEccc----CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--cccccccccee
Confidence 3468999984 44 47999999999999999999543 245899999999999999886 35666788888
Q ss_pred EEeCC-EEEEEcceeCC---------------------------------ceeecceEEEEcCcceeEEecCCCCCCCCC
Q psy1098 83 VVDNT-RVLIFGGMVEY---------------------------------GKYSSDLYELQASKWEWKRLKPKPPRFGSP 128 (390)
Q Consensus 83 ~~~~~-~iyv~GG~~~~---------------------------------~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~ 128 (390)
+..++ +||++||.+.. -....+++.|+|.+++|+.+-.. +
T Consensus 142 ~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~------p 215 (381)
T COG3055 142 FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN------P 215 (381)
T ss_pred EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC------c
Confidence 88887 99999999721 01246889999999999987643 2
Q ss_pred CCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCC----CCCCCceeeeEEe
Q psy1098 129 PCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGG----LPSPRESHTACSW 204 (390)
Q Consensus 129 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~----~p~~r~~~~~~~~ 204 (390)
..++++.+++.-++++.++-|.-... --...+.++++... ..+|..+...+. -+....++-.-..
T Consensus 216 f~~~aGsa~~~~~n~~~lInGEiKpG----------LRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s 284 (381)
T COG3055 216 FYGNAGSAVVIKGNKLTLINGEIKPG----------LRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKS 284 (381)
T ss_pred ccCccCcceeecCCeEEEEcceecCC----------ccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceecccee
Confidence 46777755555577788888865443 22334666777642 257998543221 1122233333333
Q ss_pred eccCCCcEEEEEcCCC----------C----------CccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEE
Q psy1098 205 TDEYKNTKLIIYGGMS----------G----------NRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFI 264 (390)
Q Consensus 205 ~~~~~~~~i~v~GG~~----------~----------~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i 264 (390)
++.+++.||.. + ...++||.+| +++|+. .+++|.++.+..++..++.||+
T Consensus 285 -----~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~---~GeLp~~l~YG~s~~~nn~vl~ 354 (381)
T COG3055 285 -----NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKI---VGELPQGLAYGVSLSYNNKVLL 354 (381)
T ss_pred -----CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceee---ecccCCCccceEEEecCCcEEE
Confidence 78889999852 1 1146789998 899999 8999999999999999999999
Q ss_pred EcCcccC
Q psy1098 265 FGGWVPI 271 (390)
Q Consensus 265 ~GG~~~~ 271 (390)
+||....
T Consensus 355 IGGE~~~ 361 (381)
T COG3055 355 IGGETSG 361 (381)
T ss_pred EccccCC
Confidence 9998643
No 29
>KOG2437|consensus
Probab=99.77 E-value=1.8e-19 Score=162.17 Aligned_cols=327 Identities=17% Similarity=0.299 Sum_probs=217.8
Q ss_pred CceeEEecCCCC------CCCCCCCceeeeEEeCC--EEEEEccCCC-CcccceEEEECCCCcEEeeeecCCCCCCCcee
Q psy1098 10 PVYRWRRIDDPA------GPQPRPRHGHRAVAIKD--LMLVFGGGNE-GIVEELHVFNTATNQWFIPTLKGDIPPGCAAY 80 (390)
Q Consensus 10 ~~~~W~~~~~~~------~~~p~~r~~~~~~~~~~--~iyv~GG~~~-~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~ 80 (390)
.+..|.+++..+ ...|..|.||+++.-.+ .||++||++. +...++|.|+...+.|..+...+..|..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 346787775322 24578899999998865 7999999765 47799999999999999998888889999999
Q ss_pred eEEEeCC--EEEEEcceeCCce-----eecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCE--EEEEcCcc
Q psy1098 81 GIVVDNT--RVLIFGGMVEYGK-----YSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNK--VYLFGGLA 151 (390)
Q Consensus 81 ~~~~~~~--~iyv~GG~~~~~~-----~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~--l~v~GG~~ 151 (390)
-++.... +||+.|-+...+. .-+|+|+||..++.|.-++-.. .....|...+.|.+++.+++ +||+||+.
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt-~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDT-AADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccc-cccCCcceeecceeeEecCcceEEEecCee
Confidence 9998765 8999997754332 2469999999999998876432 33457899999999999876 99999987
Q ss_pred CCCCCCCCCCCccccccceeeeecCCCceeeeeccccCC-------CCCCCCceeeeEEeeccCCCcEEEEEcCCCCC-c
Q psy1098 152 NSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYG-------GLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-R 223 (390)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~-------~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~-~ 223 (390)
..... ..+..+|.|+... ..|..+.... ..-..|.+|++-+.++ +.++|++||.... .
T Consensus 396 ~~~~e--------~~f~GLYaf~~~~---~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~---n~~ly~fggq~s~~E 461 (723)
T KOG2437|consen 396 LTCNE--------PQFSGLYAFNCQC---QTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSK---NRCLYVFGGQRSKTE 461 (723)
T ss_pred ccCCC--------ccccceEEEecCC---ccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCC---CCeEEeccCcccceE
Confidence 65432 3355689999886 5787643211 1223477888877654 8899999997544 2
Q ss_pred cCcEEEEecCCCeEeeccc----CCCCCCCCceeeEEEE---CCEEEEEcCcccCCCccccccccccceecCceEEeecC
Q psy1098 224 LSDLFMLDINSMTWQKPQI----LGPQPLPRSLHTACVI---GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLP 296 (390)
Q Consensus 224 ~~~v~~~d~~~~~W~~~~~----~~~~p~~r~~~~~~~~---~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 296 (390)
++-.+.|++....-..+.- ...+-..+....-+.. .+.|.+.-|....... .+....+++|+|+..
T Consensus 462 l~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~-------~e~~~rns~wi~~i~ 534 (723)
T KOG2437|consen 462 LNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEK-------REENVRNSFWIYDIV 534 (723)
T ss_pred EeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccC-------ccccccCcEEEEEec
Confidence 4445566555433222210 1111111111111222 3567766666432211 111235788888888
Q ss_pred CCeeeecccccc------------------cCCCCCCCCCcceeee--CCEEEEEeccCCccccccceeeeCeeEEEEec
Q psy1098 297 EMTWEDLSVEVT------------------DDFLPKPRAGHCASVI--NSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVE 356 (390)
Q Consensus 297 ~~~W~~v~~~~~------------------~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~ 356 (390)
++.|..+..... ....|.+|++|+.+.. -.-+|++||..+.. ....-...|.|.+++-
T Consensus 535 ~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~--~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 535 RNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKS--CSPKMRLDDFWSLKIC 612 (723)
T ss_pred ccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCC--CCchhhhhhHHHHhhc
Confidence 888876543210 0116678898887754 46689999987553 2223346899999876
Q ss_pred CCCC
Q psy1098 357 KPGP 360 (390)
Q Consensus 357 ~~~~ 360 (390)
.|..
T Consensus 613 rp~~ 616 (723)
T KOG2437|consen 613 RPSK 616 (723)
T ss_pred ccch
Confidence 5443
No 30
>KOG2437|consensus
Probab=99.54 E-value=5.9e-15 Score=133.44 Aligned_cols=198 Identities=24% Similarity=0.416 Sum_probs=151.3
Q ss_pred cceeEEecCCCCC---CCCCCCCCccceEEEEC--CEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeecc
Q psy1098 112 KWEWKRLKPKPPR---FGSPPCPRLGHSFTLIG--NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMP 186 (390)
Q Consensus 112 ~~~W~~~~~~~~~---~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~ 186 (390)
+..|.++++.... ....|..|.+|.++... +++|++||.++. .-+.|.|.|.... +.|..+
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-----------~~l~DFW~Y~v~e---~~W~~i 303 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-----------QDLADFWAYSVKE---NQWTCI 303 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-----------hhHHHHHhhcCCc---ceeEEe
Confidence 4468887653211 12457899999999985 499999999987 6788999998876 789998
Q ss_pred ccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCC-------ccCcEEEEecCCCeEeecccCC---CCCCCCceeeEE
Q psy1098 187 GTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-------RLSDLFMLDINSMTWQKPQILG---PQPLPRSLHTAC 256 (390)
Q Consensus 187 ~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~-------~~~~v~~~d~~~~~W~~~~~~~---~~p~~r~~~~~~ 256 (390)
...+..|..|..|.++...+ +.++|++|-+-+. ...++|+||..++.|..+.... .-|...+.|.++
T Consensus 304 N~~t~~PG~RsCHRMVid~S---~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~ 380 (723)
T KOG2437|consen 304 NRDTEGPGARSCHRMVIDIS---RRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMC 380 (723)
T ss_pred ecCCCCCcchhhhhhhhhhh---HhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceee
Confidence 87778999999999998643 6799999976432 1578999999999999976422 346667899999
Q ss_pred EECCE--EEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccC----CCCCCCCCcceeee--CCEE
Q psy1098 257 VIGDR--MFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDD----FLPKPRAGHCASVI--NSRM 328 (390)
Q Consensus 257 ~~~~~--i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~----~~p~~r~~~~~~~~--~~~l 328 (390)
+.+++ |||+||+....+.. ....+|.||.....|..+....... .....|.+|.|... +..+
T Consensus 381 Vd~~k~~iyVfGGr~~~~~e~----------~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~l 450 (723)
T KOG2437|consen 381 VDSEKHMIYVFGGRILTCNEP----------QFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCL 450 (723)
T ss_pred EecCcceEEEecCeeccCCCc----------cccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeE
Confidence 99877 99999997554322 2678999999999999876531111 12347889988877 5679
Q ss_pred EEEeccCC
Q psy1098 329 YIWSGRDD 336 (390)
Q Consensus 329 ~v~GG~~~ 336 (390)
|++||...
T Consensus 451 y~fggq~s 458 (723)
T KOG2437|consen 451 YVFGGQRS 458 (723)
T ss_pred EeccCccc
Confidence 99999753
No 31
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.35 E-value=2.1e-10 Score=97.27 Aligned_cols=222 Identities=19% Similarity=0.211 Sum_probs=143.3
Q ss_pred EEEEEcceeCCceeecceEEEEcCcce----eEEecCCCCCCCCCCCCCccceEEEE----CCEEEEEcCccC-----CC
Q psy1098 88 RVLIFGGMVEYGKYSSDLYELQASKWE----WKRLKPKPPRFGSPPCPRLGHSFTLI----GNKVYLFGGLAN-----SG 154 (390)
Q Consensus 88 ~iyv~GG~~~~~~~~~~v~~~d~~~~~----W~~~~~~~~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~-----~~ 154 (390)
..++.||+..+...++.+|+....+.. -+......+..++.|.+|++|++.++ +..+++|||+.- .+
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 578899999988899999988776543 33333445556889999999999887 245778999753 33
Q ss_pred CCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCC---CCccCcEEEEe
Q psy1098 155 GDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMS---GNRLSDLFMLD 231 (390)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~---~~~~~~v~~~d 231 (390)
+.++.++. .+...++.+|+.-+.. .....+.+..+.++|.+.+- ++.||++||.. +.+-..++++.
T Consensus 120 TenWNsVv--DC~P~VfLiDleFGC~----tah~lpEl~dG~SFHvslar-----~D~VYilGGHsl~sd~Rpp~l~rlk 188 (337)
T PF03089_consen 120 TENWNSVV--DCPPQVFLIDLEFGCC----TAHTLPELQDGQSFHVSLAR-----NDCVYILGGHSLESDSRPPRLYRLK 188 (337)
T ss_pred hhhcceec--cCCCeEEEEecccccc----ccccchhhcCCeEEEEEEec-----CceEEEEccEEccCCCCCCcEEEEE
Confidence 44555554 5566788888876432 22235567778899999887 99999999974 22345567665
Q ss_pred cCCCeEeecccCCCCCCCCceeeEEEE---CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccc
Q psy1098 232 INSMTWQKPQILGPQPLPRSLHTACVI---GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVT 308 (390)
Q Consensus 232 ~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~ 308 (390)
++--.=+.+..-..++....-.++++. .+..+|+||+.....+. .......+|-.+-......++.+
T Consensus 189 VdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKR----------m~C~~V~Ldd~~I~ie~~E~P~W 258 (337)
T PF03089_consen 189 VDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKR----------MECNTVSLDDDGIHIEEREPPEW 258 (337)
T ss_pred EeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceee----------eeeeEEEEeCCceEeccCCCCCC
Confidence 442110100000112233333344333 46799999996554322 23455566666666777777666
Q ss_pred cCCCCCCCCCcceeeeCCEEEE
Q psy1098 309 DDFLPKPRAGHCASVINSRMYI 330 (390)
Q Consensus 309 ~~~~p~~r~~~~~~~~~~~l~v 330 (390)
+......|.+++...-.+.+++
T Consensus 259 t~dI~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 259 TGDIKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred CCCcCcCccccccccCCceEEE
Confidence 6667778888887777666444
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.15 E-value=8.9e-11 Score=75.68 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=43.6
Q ss_pred CCceeeeEEeCCEEEEEccCCC--CcccceEEEECCCCcEEeeeecCCCCCCC
Q psy1098 27 PRHGHRAVAIKDLMLVFGGGNE--GIVEELHVFNTATNQWFIPTLKGDIPPGC 77 (390)
Q Consensus 27 ~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~d~~~~~W~~~~~~~~~p~~r 77 (390)
+|.+|++++++++|||+||... ...+++++||+.+++|++++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 6899999999999999999766 47899999999999999998 788776
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.13 E-value=1.1e-10 Score=75.19 Aligned_cols=47 Identities=30% Similarity=0.546 Sum_probs=42.8
Q ss_pred CCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCC
Q psy1098 76 GCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKP 122 (390)
Q Consensus 76 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~ 122 (390)
+|.+|++++++++||++||........+++++||+++++|+++++|+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 58899999999999999999866677899999999999999998864
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.99 E-value=1e-09 Score=69.74 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=42.3
Q ss_pred CCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCC
Q psy1098 76 GCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPK 121 (390)
Q Consensus 76 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~ 121 (390)
||..|++++.+++||++||........+++++||+.+++|+.+++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 5889999999999999999998677899999999999999999876
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.91 E-value=3e-09 Score=68.18 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCceeeEEEe-CCEEEEEcceeCCceeecceEEEEcCcceeEEecCC
Q psy1098 76 GCAAYGIVVD-NTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPK 121 (390)
Q Consensus 76 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~ 121 (390)
+|.+|+++.+ +++|||+||.......++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 5889999988 589999999998778899999999999999999765
No 36
>PLN02772 guanylate kinase
Probab=98.90 E-value=7.3e-09 Score=94.54 Aligned_cols=100 Identities=25% Similarity=0.355 Sum_probs=80.7
Q ss_pred CCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceee
Q psy1098 244 GPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASV 323 (390)
Q Consensus 244 ~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~ 323 (390)
+....++..++++.+++++||+||.+... +..+.+++||..+.+|..... .+..|.+|.+|++|+
T Consensus 19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~------------~~~~~v~i~D~~t~~W~~P~V---~G~~P~~r~GhSa~v 83 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDKTYVIGGNHEGN------------TLSIGVQILDKITNNWVSPIV---LGTGPKPCKGYSAVV 83 (398)
T ss_pred CccCCCCCcceeEEECCEEEEEcccCCCc------------cccceEEEEECCCCcEecccc---cCCCCCCCCcceEEE
Confidence 34556889999999999999999976421 126799999999999998775 344899999999999
Q ss_pred e-CCEEEEEeccCCccccccceeeeCeeEEEEecCCCCCCceeEE
Q psy1098 324 I-NSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVEKPGPPGRIQLV 367 (390)
Q Consensus 324 ~-~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~~~~~~~~~~~~ 367 (390)
+ +++|+|+++.... .+++|-+++++|-...+..++
T Consensus 84 ~~~~rilv~~~~~~~---------~~~~w~l~~~t~~~~~~~~~~ 119 (398)
T PLN02772 84 LNKDRILVIKKGSAP---------DDSIWFLEVDTPFVREQKKLL 119 (398)
T ss_pred ECCceEEEEeCCCCC---------ccceEEEEcCCHHHHhhcccc
Confidence 9 6899999887643 389999999988776655544
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.86 E-value=6.3e-09 Score=66.57 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=40.8
Q ss_pred CCceeeEEEeCCEEEEEcce--eCCceeecceEEEEcCcceeEEecCC
Q psy1098 76 GCAAYGIVVDNTRVLIFGGM--VEYGKYSSDLYELQASKWEWKRLKPK 121 (390)
Q Consensus 76 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~v~~~d~~~~~W~~~~~~ 121 (390)
+|..|++++.+++||++||. .......+++++||+++++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58899999999999999999 44556789999999999999998864
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.86 E-value=6.9e-09 Score=66.38 Aligned_cols=48 Identities=29% Similarity=0.610 Sum_probs=41.4
Q ss_pred CCEEEEEccee-CCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEE
Q psy1098 86 NTRVLIFGGMV-EYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI 140 (390)
Q Consensus 86 ~~~iyv~GG~~-~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~ 140 (390)
+++||||||.. .....++++|+||+.+++|+++.+ +|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~-------~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGD-------LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCC-------CCCCccceEEEEC
Confidence 57999999998 456788999999999999999844 5789999999864
No 39
>PLN02772 guanylate kinase
Probab=98.85 E-value=2e-08 Score=91.73 Aligned_cols=90 Identities=26% Similarity=0.476 Sum_probs=76.1
Q ss_pred CCCCCCCCceeeeEEeCCEEEEEccCCCC--cccceEEEECCCCcEEeeeecCCCCCCCceeeEEEe-CCEEEEEcceeC
Q psy1098 21 AGPQPRPRHGHRAVAIKDLMLVFGGGNEG--IVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVD-NTRVLIFGGMVE 97 (390)
Q Consensus 21 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 97 (390)
++.-+.+|..|+++.+++++|||||.+.. ..+.+++||..+++|......|..|.+|.+|+++++ +++|+|+++...
T Consensus 18 ~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 18 NGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred cCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 34456789999999999999999997654 578999999999999999999999999999999877 579999998754
Q ss_pred CceeecceEEEEcCcc
Q psy1098 98 YGKYSSDLYELQASKW 113 (390)
Q Consensus 98 ~~~~~~~v~~~d~~~~ 113 (390)
.. .++|.+...+.
T Consensus 98 ~~---~~~w~l~~~t~ 110 (398)
T PLN02772 98 PD---DSIWFLEVDTP 110 (398)
T ss_pred Cc---cceEEEEcCCH
Confidence 43 67888776654
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.84 E-value=8.2e-09 Score=66.03 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=40.4
Q ss_pred CCEEEEEccCC---CCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEe
Q psy1098 37 KDLMLVFGGGN---EGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVD 85 (390)
Q Consensus 37 ~~~iyv~GG~~---~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 85 (390)
+++||||||.. ....+++|.||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999977 347899999999999999984 89999999999864
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.83 E-value=5.4e-09 Score=66.39 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=38.1
Q ss_pred CCceeeeEEeCCEEEEEccCCC--CcccceEEEECCCCcEEeee
Q psy1098 27 PRHGHRAVAIKDLMLVFGGGNE--GIVEELHVFNTATNQWFIPT 68 (390)
Q Consensus 27 ~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~d~~~~~W~~~~ 68 (390)
||.+|++++++++|||+||... ...+++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 6899999999999999999655 57899999999999999988
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.80 E-value=9.8e-09 Score=65.77 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=29.7
Q ss_pred CCceeeEEEE-CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 249 PRSLHTACVI-GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 249 ~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
||.+|+++.+ +++|||+||.+... ...+++++||+++++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~------------~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG------------SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T------------EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC------------cccCCEEEEECCCCEEEECCC
Confidence 6899999999 58999999986542 247899999999999999966
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=2.1e-08 Score=64.17 Aligned_cols=42 Identities=40% Similarity=0.684 Sum_probs=37.8
Q ss_pred CCceeeeEEeCCEEEEEccC----CCCcccceEEEECCCCcEEeee
Q psy1098 27 PRHGHRAVAIKDLMLVFGGG----NEGIVEELHVFNTATNQWFIPT 68 (390)
Q Consensus 27 ~r~~~~~~~~~~~iyv~GG~----~~~~~~~~~~~d~~~~~W~~~~ 68 (390)
+|.+|++++++++||||||. .....++++.||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 68999999999999999998 2347789999999999999987
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.65 E-value=7.1e-08 Score=59.26 Aligned_cols=40 Identities=35% Similarity=0.527 Sum_probs=36.0
Q ss_pred CCCCCceeeEEEeCCEEEEEcceeC-CceeecceEEEEcCc
Q psy1098 73 IPPGCAAYGIVVDNTRVLIFGGMVE-YGKYSSDLYELQASK 112 (390)
Q Consensus 73 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~~d~~~ 112 (390)
+|.+|..|+++.++++||++||... ....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 677899999999876
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.59 E-value=1.3e-07 Score=58.16 Aligned_cols=38 Identities=32% Similarity=0.622 Sum_probs=33.5
Q ss_pred CCCCCceeeeEEeCCEEEEEccCC---CCcccceEEEECCC
Q psy1098 24 QPRPRHGHRAVAIKDLMLVFGGGN---EGIVEELHVFNTAT 61 (390)
Q Consensus 24 ~p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~d~~~ 61 (390)
.|.+|.+|++++++++|||+||.. ....+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999999999999976 34779999999875
No 46
>smart00612 Kelch Kelch domain.
Probab=98.52 E-value=1.4e-07 Score=59.66 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=39.4
Q ss_pred EEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCC
Q psy1098 261 RMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINS 326 (390)
Q Consensus 261 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~ 326 (390)
+|||+||.... ....++++||+.+++|+.+++ +|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~-------------~~~~~v~~yd~~~~~W~~~~~------~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-------------QRLKSVEVYDPETNKWTPLPS------MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-------------ceeeeEEEECCCCCeEccCCC------CCCccccceEEEeCC
Confidence 48999998531 126789999999999999987 999999999988764
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.49 E-value=1.8e-05 Score=68.33 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=91.1
Q ss_pred ceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCc----ceeEEecCCCCCCCCC
Q psy1098 53 ELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASK----WEWKRLKPKPPRFGSP 128 (390)
Q Consensus 53 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~----~~W~~~~~~~~~~~~~ 128 (390)
....||+.+++++.+....+ .-++++++ .-++++++.||.... .+.+-.|++.. ..|.+... .+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td--~FCSgg~~-L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~------~m 114 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD--TFCSGGAF-LPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN------DM 114 (243)
T ss_pred EEEEEecCCCcEEeccCCCC--CcccCcCC-CCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc------cc
Confidence 35689999999988764321 22344443 346799999998542 24466677765 46877653 14
Q ss_pred CCCCccceEEEE-CCEEEEEcCccCCCCCCCCCCCccccccceeeeecC---CCceeeeeccccC-CCCCCCCceeeeEE
Q psy1098 129 PCPRLGHSFTLI-GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELK---SGHTTVWDMPGTY-GGLPSPRESHTACS 203 (390)
Q Consensus 129 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~W~~~~~~-~~~p~~r~~~~~~~ 203 (390)
-.+|.+.+++.+ +++++|+||..... +.|-.. ......|..+... ...+...|-+..+.
T Consensus 115 ~~~RWYpT~~~L~DG~vlIvGG~~~~t----------------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ll 178 (243)
T PF07250_consen 115 QSGRWYPTATTLPDGRVLIVGGSNNPT----------------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLL 178 (243)
T ss_pred cCCCccccceECCCCCEEEEeCcCCCc----------------ccccCCccCCCCceeeecchhhhccCccccCceEEEc
Confidence 589999999988 68999999987431 111111 1111223322211 12333444444444
Q ss_pred eeccCCCcEEEEEcCCCCCccCcEEEEecCCCeE-ee
Q psy1098 204 WTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTW-QK 239 (390)
Q Consensus 204 ~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W-~~ 239 (390)
- +++||+++.. .-.+||..++++ ..
T Consensus 179 P-----dG~lFi~an~------~s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 179 P-----DGNLFIFANR------GSIIYDYKTNTVVRT 204 (243)
T ss_pred C-----CCCEEEEEcC------CcEEEeCCCCeEEee
Confidence 3 8999999974 467889999987 44
No 48
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.48 E-value=3.9e-06 Score=71.83 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=108.8
Q ss_pred CCCCCceeeeEE-eeccCCCcEEEEEcCCCCCc--cCcEEEEecCCCe--------EeecccCCCCCCCCceeeEEEE--
Q psy1098 192 LPSPRESHTACS-WTDEYKNTKLIIYGGMSGNR--LSDLFMLDINSMT--------WQKPQILGPQPLPRSLHTACVI-- 258 (390)
Q Consensus 192 ~p~~r~~~~~~~-~~~~~~~~~i~v~GG~~~~~--~~~v~~~d~~~~~--------W~~~~~~~~~p~~r~~~~~~~~-- 258 (390)
+|+-|.-+.+.. -+........+|.||...+. .+.+|++.+.... .++....++.|.+|++|++-++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 455554333333 12233344566778876442 4667877665432 3344557899999999999887
Q ss_pred --CCEEEEEcCcccCCCcccc-ccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccC
Q psy1098 259 --GDRMFIFGGWVPILKDESR-SLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRD 335 (390)
Q Consensus 259 --~~~i~i~GG~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 335 (390)
+...++|||++..+...+. ..++....+...|+..|++-...+.-..+. +-.....|.+..-++.+|++||-.
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpE----l~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPE----LQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchh----hcCCeEEEEEEecCceEEEEccEE
Confidence 2348899999988765543 334555556788999999988876543211 555777888999999999999975
Q ss_pred CccccccceeeeCeeEEEEecCCCCCCcee
Q psy1098 336 DYKKAWNNQVCCKDLWYLEVEKPGPPGRIQ 365 (390)
Q Consensus 336 ~~~~~~~~~~~~~d~w~~~~~~~~~~~~~~ 365 (390)
- +.....-.++++.++.|..+..++
T Consensus 175 l-----~sd~Rpp~l~rlkVdLllGSP~vs 199 (337)
T PF03089_consen 175 L-----ESDSRPPRLYRLKVDLLLGSPAVS 199 (337)
T ss_pred c-----cCCCCCCcEEEEEEeecCCCceeE
Confidence 2 222334567788777766665554
No 49
>smart00612 Kelch Kelch domain.
Probab=98.42 E-value=5.2e-07 Score=57.01 Aligned_cols=46 Identities=35% Similarity=0.624 Sum_probs=39.5
Q ss_pred EEEEEcCCCCC-ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECC
Q psy1098 212 KLIIYGGMSGN-RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGD 260 (390)
Q Consensus 212 ~i~v~GG~~~~-~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 260 (390)
+||++||..+. ..+++++||+.+++|+. ...+|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTP---LPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEcc---CCCCCCccccceEEEeCC
Confidence 48999998753 47889999999999999 568999999999988764
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.09 E-value=0.00035 Score=60.45 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=91.1
Q ss_pred eEEEEcCcceeEEecCCCCCCCCCCCCCccceEEE-ECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCC-Cceee
Q psy1098 105 LYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTL-IGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKS-GHTTV 182 (390)
Q Consensus 105 v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 182 (390)
--.||+.+++++.+... .-....+-+. -++++++.||.... ...+-.|+... .....
T Consensus 48 s~~yD~~tn~~rpl~v~--------td~FCSgg~~L~dG~ll~tGG~~~G-------------~~~ir~~~p~~~~~~~~ 106 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ--------TDTFCSGGAFLPDGRLLQTGGDNDG-------------NKAIRIFTPCTSDGTCD 106 (243)
T ss_pred EEEEecCCCcEEeccCC--------CCCcccCcCCCCCCCEEEeCCCCcc-------------ccceEEEecCCCCCCCC
Confidence 44799999999877542 1222222222 27899999997653 12344555543 22246
Q ss_pred eeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCC-----CeEeecccC-CCCCCCCceeeEE
Q psy1098 183 WDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINS-----MTWQKPQIL-GPQPLPRSLHTAC 256 (390)
Q Consensus 183 W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~-----~~W~~~~~~-~~~p~~r~~~~~~ 256 (390)
|.... ..|..+|-..++..++ +++++|+||.... ..+.+.... ..|..+... ...+...+-+..+
T Consensus 107 w~e~~--~~m~~~RWYpT~~~L~----DG~vlIvGG~~~~---t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~l 177 (243)
T PF07250_consen 107 WTESP--NDMQSGRWYPTATTLP----DGRVLIVGGSNNP---TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHL 177 (243)
T ss_pred ceECc--ccccCCCccccceECC----CCCEEEEeCcCCC---cccccCCccCCCCceeeecchhhhccCccccCceEEE
Confidence 87743 2488899999998885 8999999998631 222222211 122222111 1233334445555
Q ss_pred EECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCee-eeccc
Q psy1098 257 VIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTW-EDLSV 305 (390)
Q Consensus 257 ~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W-~~v~~ 305 (390)
.-+++||+++.. .-.+||..++++ +.++.
T Consensus 178 lPdG~lFi~an~--------------------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 178 LPDGNLFIFANR--------------------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred cCCCCEEEEEcC--------------------CcEEEeCCCCeEEeeCCC
Confidence 558999999873 556789999976 66666
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.97 E-value=0.0023 Score=55.74 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=100.2
Q ss_pred cceEEEECCCCcEEeeeecCCCCCC---Cce--eeEEE---eCC-EEEEEcceeCCceeecceEEEEcCcceeEEecCCC
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPG---CAA--YGIVV---DNT-RVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKP 122 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~---r~~--~~~~~---~~~-~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~ 122 (390)
..+.++||.+.+|..++. ++.+ ... .++.. .++ +++.+...... .....+.+|+..++.|+.+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCC
Confidence 568999999999999873 2221 111 11111 111 45555433111 12346889999999999887422
Q ss_pred CCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeec-cccCCCCCCCC----c
Q psy1098 123 PRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDM-PGTYGGLPSPR----E 197 (390)
Q Consensus 123 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~~~~p~~r----~ 197 (390)
..... ....+.+++.+|-+.-.... .....+..||+.+ .+|.. ++ +|..+ .
T Consensus 90 -----~~~~~-~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~---E~f~~~i~----~P~~~~~~~~ 145 (230)
T TIGR01640 90 -----PHHPL-KSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSS---ERFKEFIP----LPCGNSDSVD 145 (230)
T ss_pred -----CCccc-cCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEccc---ceEeeeee----cCcccccccc
Confidence 11111 22266779988877543221 1112588999987 67883 43 22222 1
Q ss_pred eeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEe-cCCCeEeecccCCCCCCCCc----eeeEEEECCEEEEEcC
Q psy1098 198 SHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLD-INSMTWQKPQILGPQPLPRS----LHTACVIGDRMFIFGG 267 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d-~~~~~W~~~~~~~~~p~~r~----~~~~~~~~~~i~i~GG 267 (390)
....+.. ++++.++........-+||+++ -....|+++-.....+.+.. ....+..+++|++...
T Consensus 146 ~~~L~~~-----~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 146 YLSLINY-----KGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred ceEEEEE-----CCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 2334455 7888887654322224678775 33567998543332122211 2344556788888764
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.86 E-value=0.014 Score=55.27 Aligned_cols=237 Identities=15% Similarity=0.227 Sum_probs=126.9
Q ss_pred CCCCCCCc--eeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCCC--CC
Q psy1098 4 LSDDNCPV--YRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIPP--GC 77 (390)
Q Consensus 4 ~~~~~~~~--~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~--~r 77 (390)
|.++|..+ ..|+.-... ....+.++.++.+|+..+ ...++.+|+.+++ |+... ..|. .+
T Consensus 132 l~ald~~tG~~~W~~~~~~-------~~~ssP~v~~~~v~v~~~-----~g~l~ald~~tG~~~W~~~~---~~~~~~~~ 196 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVAG-------EALSRPVVSDGLVLVHTS-----NGMLQALNESDGAVKWTVNL---DVPSLTLR 196 (394)
T ss_pred EEEEECCCCCCcccccCCC-------ceecCCEEECCEEEEECC-----CCEEEEEEccCCCEeeeecC---CCCccccc
Confidence 55666654 478754311 112233455777777544 2468999998777 76533 1111 11
Q ss_pred ceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcc--eeEEecCCCCCCCCCCC---CCccceEEEECCEEEEEcCccC
Q psy1098 78 AAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKW--EWKRLKPKPPRFGSPPC---PRLGHSFTLIGNKVYLFGGLAN 152 (390)
Q Consensus 78 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~--~W~~~~~~~~~~~~~p~---~r~~~~~~~~~~~l~v~GG~~~ 152 (390)
...+-+..++.+|+..+. ..++.+|+.+. .|+.-...+. +.... .....+-+..++.+|+.+. .+
T Consensus 197 ~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~--~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g 266 (394)
T PRK11138 197 GESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPT--GATEIDRLVDVDTTPVVVGGVVYALAY-NG 266 (394)
T ss_pred CCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCC--CccchhcccccCCCcEEECCEEEEEEc-CC
Confidence 222334456666664332 24677777655 4764221110 00000 0112233455788887542 21
Q ss_pred CCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEec
Q psy1098 153 SGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDI 232 (390)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~ 232 (390)
.++.+|..+.. ..|+... +. . ...+.. +++||+.... ..++.+|+
T Consensus 267 ----------------~l~ald~~tG~-~~W~~~~--~~---~---~~~~~~-----~~~vy~~~~~-----g~l~ald~ 311 (394)
T PRK11138 267 ----------------NLVALDLRSGQ-IVWKREY--GS---V---NDFAVD-----GGRIYLVDQN-----DRVYALDT 311 (394)
T ss_pred ----------------eEEEEECCCCC-EEEeecC--CC---c---cCcEEE-----CCEEEEEcCC-----CeEEEEEC
Confidence 37888888753 4698621 11 1 123344 7889987643 46889998
Q ss_pred CCC--eEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCe--eeecccccc
Q psy1098 233 NSM--TWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT--WEDLSVEVT 308 (390)
Q Consensus 233 ~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--W~~v~~~~~ 308 (390)
.+. .|+... ...+...+.++.+++||+... ...++++|+.+.+ |+.-
T Consensus 312 ~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~-------------------~G~l~~ld~~tG~~~~~~~----- 362 (394)
T PRK11138 312 RGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDS-------------------EGYLHWINREDGRFVAQQK----- 362 (394)
T ss_pred CCCcEEEcccc-----cCCCcccCCEEECCEEEEEeC-------------------CCEEEEEECCCCCEEEEEE-----
Confidence 865 486521 112333345567888887643 3568889987765 4431
Q ss_pred cCCCCCCCCCcceeeeCCEEEEEe
Q psy1098 309 DDFLPKPRAGHCASVINSRMYIWS 332 (390)
Q Consensus 309 ~~~~p~~r~~~~~~~~~~~l~v~G 332 (390)
++......+-+..+++|||..
T Consensus 363 ---~~~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 363 ---VDSSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred ---cCCCcceeCCEEECCEEEEEe
Confidence 222223445566788777663
No 53
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.74 E-value=0.01 Score=51.67 Aligned_cols=202 Identities=12% Similarity=0.052 Sum_probs=104.4
Q ss_pred CCCCCceeEEecCCCCCCCCCCCcee-eeEEeC----C-EEEEEccCC-CCcccceEEEECCCCcEEeeeecCCCCCCCc
Q psy1098 6 DDNCPVYRWRRIDDPAGPQPRPRHGH-RAVAIK----D-LMLVFGGGN-EGIVEELHVFNTATNQWFIPTLKGDIPPGCA 78 (390)
Q Consensus 6 ~~~~~~~~W~~~~~~~~~~p~~r~~~-~~~~~~----~-~iyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~ 78 (390)
-.||.|++|+.|+.++.. ......+ ....++ . ||+.+.... ......+.+|+..++.|+.+... ++....
T Consensus 18 V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~--~~~~~~ 94 (230)
T TIGR01640 18 VWNPSTGQSRWLPTPKSR-RSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS--PPHHPL 94 (230)
T ss_pred EECCCCCCEEecCCCCCc-ccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--CCCccc
Confidence 358999999999732211 0001111 111121 2 354444321 12345788999999999998732 121111
Q ss_pred eeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEE-ecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCC
Q psy1098 79 AYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKR-LKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDE 157 (390)
Q Consensus 79 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~-~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 157 (390)
....+.+++.||.+.-.... .....+..||..+.+|.. ++. |.. .........++.++++|.++......
T Consensus 95 ~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~-P~~---~~~~~~~~~L~~~~G~L~~v~~~~~~---- 165 (230)
T TIGR01640 95 KSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPL-PCG---NSDSVDYLSLINYKGKLAVLKQKKDT---- 165 (230)
T ss_pred cCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeec-Ccc---ccccccceEEEEECCEEEEEEecCCC----
Confidence 12256778888888754221 111258899999999995 442 210 00112234566778888887553221
Q ss_pred CCCCCccccccceeeeecCCCceeeeeccccCCC--CCCCCc-eeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCC
Q psy1098 158 TKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGG--LPSPRE-SHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINS 234 (390)
Q Consensus 158 ~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~--~p~~r~-~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~ 234 (390)
..-++|.++-.. ...|.+.-.... .+..+. ....... .+++|++..... ...-+..||+.+
T Consensus 166 --------~~~~IWvl~d~~--~~~W~k~~~i~~~~~~~~~~~~~~~~~~----~~g~I~~~~~~~--~~~~~~~y~~~~ 229 (230)
T TIGR01640 166 --------NNFDLWVLNDAG--KQEWSKLFTVPIPPLPDLVDDNFLSGFT----DKGEIVLCCEDE--NPFYIFYYNVGE 229 (230)
T ss_pred --------CcEEEEEECCCC--CCceeEEEEEcCcchhhhhhheeEeEEe----eCCEEEEEeCCC--CceEEEEEeccC
Confidence 113577776432 245987433321 111111 1122222 278888876531 112388888876
Q ss_pred C
Q psy1098 235 M 235 (390)
Q Consensus 235 ~ 235 (390)
+
T Consensus 230 ~ 230 (230)
T TIGR01640 230 N 230 (230)
T ss_pred C
Confidence 4
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.68 E-value=0.052 Score=51.45 Aligned_cols=216 Identities=16% Similarity=0.204 Sum_probs=116.9
Q ss_pred eeeEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecC--CCC---CCCceeeEEEeCCEEEEEcceeCCceeec
Q psy1098 31 HRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKG--DIP---PGCAAYGIVVDNTRVLIFGGMVEYGKYSS 103 (390)
Q Consensus 31 ~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~--~~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 103 (390)
.+.++.++++|+.... ..++.+|..+++ |+.-.... ..+ ..+.....+..++++|+.+.. .
T Consensus 63 ~sPvv~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-------g 130 (394)
T PRK11138 63 LHPAVAYNKVYAADRA-----GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-------G 130 (394)
T ss_pred eccEEECCEEEEECCC-----CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC-------C
Confidence 3456778999998762 368899987665 76532110 000 112223346677888874321 3
Q ss_pred ceEEEEcCcc--eeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCcee
Q psy1098 104 DLYELQASKW--EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTT 181 (390)
Q Consensus 104 ~v~~~d~~~~--~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 181 (390)
.++.+|..+. .|+.-.. . ....+-+..++.+|+..+. ..++.+|..+.. .
T Consensus 131 ~l~ald~~tG~~~W~~~~~---------~-~~~ssP~v~~~~v~v~~~~-----------------g~l~ald~~tG~-~ 182 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA---------G-EALSRPVVSDGLVLVHTSN-----------------GMLQALNESDGA-V 182 (394)
T ss_pred EEEEEECCCCCCcccccCC---------C-ceecCCEEECCEEEEECCC-----------------CEEEEEEccCCC-E
Confidence 5889998665 5865322 1 1122234457777774321 138889988764 5
Q ss_pred eeeccccCCCCCC--CCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCe--EeecccCCCCCCC-----C--
Q psy1098 182 VWDMPGTYGGLPS--PRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT--WQKPQILGPQPLP-----R-- 250 (390)
Q Consensus 182 ~W~~~~~~~~~p~--~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~--W~~~~~~~~~p~~-----r-- 250 (390)
.|+.... .|. .+...+-+.. ++.+|+..+. ..++.+|+.+.+ |+... ..|.. |
T Consensus 183 ~W~~~~~---~~~~~~~~~~sP~v~-----~~~v~~~~~~-----g~v~a~d~~~G~~~W~~~~---~~~~~~~~~~~~~ 246 (394)
T PRK11138 183 KWTVNLD---VPSLTLRGESAPATA-----FGGAIVGGDN-----GRVSAVLMEQGQLIWQQRI---SQPTGATEIDRLV 246 (394)
T ss_pred eeeecCC---CCcccccCCCCCEEE-----CCEEEEEcCC-----CEEEEEEccCChhhheecc---ccCCCccchhccc
Confidence 6987321 121 1111222333 5666664432 457788887664 77521 11110 1
Q ss_pred -ceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCe--eeecccccccCCCCCCCCCcceeeeCCE
Q psy1098 251 -SLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT--WEDLSVEVTDDFLPKPRAGHCASVINSR 327 (390)
Q Consensus 251 -~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--W~~v~~~~~~~~~p~~r~~~~~~~~~~~ 327 (390)
...+-++.++.+|+.+. ...++++|+.+.+ |+.-.. .. ...+..+++
T Consensus 247 ~~~~sP~v~~~~vy~~~~-------------------~g~l~ald~~tG~~~W~~~~~--------~~---~~~~~~~~~ 296 (394)
T PRK11138 247 DVDTTPVVVGGVVYALAY-------------------NGNLVALDLRSGQIVWKREYG--------SV---NDFAVDGGR 296 (394)
T ss_pred ccCCCcEEECCEEEEEEc-------------------CCeEEEEECCCCCEEEeecCC--------Cc---cCcEEECCE
Confidence 11233456888887653 3578889987764 875321 11 123455777
Q ss_pred EEEEe
Q psy1098 328 MYIWS 332 (390)
Q Consensus 328 l~v~G 332 (390)
||+..
T Consensus 297 vy~~~ 301 (394)
T PRK11138 297 IYLVD 301 (394)
T ss_pred EEEEc
Confidence 77765
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.42 E-value=0.1 Score=49.09 Aligned_cols=216 Identities=17% Similarity=0.218 Sum_probs=109.0
Q ss_pred EEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcC
Q psy1098 34 VAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQAS 111 (390)
Q Consensus 34 ~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~ 111 (390)
++.++.+|+..+ ...++.+|+.+++ |+..... .....+...+.+..++.+|+ |... ..++.+|+.
T Consensus 142 ~v~~~~v~v~~~-----~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~ 208 (377)
T TIGR03300 142 LVANGLVVVRTN-----DGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQ 208 (377)
T ss_pred EEECCEEEEECC-----CCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEECCEEEE-ECCC------CEEEEEEcc
Confidence 344566665433 2458899987665 6643311 00011222233445555543 3321 247788876
Q ss_pred cc--eeEEecCCCCCCCCCCCCC---ccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeecc
Q psy1098 112 KW--EWKRLKPKPPRFGSPPCPR---LGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMP 186 (390)
Q Consensus 112 ~~--~W~~~~~~~~~~~~~p~~r---~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~ 186 (390)
+. .|+.-...+. +.....| ...+.+..++.+|+... .+ .++.+|..+.. ..|..-
T Consensus 209 tG~~~W~~~~~~~~--g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g----------------~l~a~d~~tG~-~~W~~~ 268 (377)
T TIGR03300 209 TGQPLWEQRVALPK--GRTELERLVDVDGDPVVDGGQVYAVSY-QG----------------RVAALDLRSGR-VLWKRD 268 (377)
T ss_pred CCCEeeeeccccCC--CCCchhhhhccCCccEEECCEEEEEEc-CC----------------EEEEEECCCCc-EEEeec
Confidence 55 5754321110 0000001 12223345677777532 11 37888887653 568762
Q ss_pred ccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCC--eEeecccCCCCCCCCceeeEEEECCEEEE
Q psy1098 187 GTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSM--TWQKPQILGPQPLPRSLHTACVIGDRMFI 264 (390)
Q Consensus 187 ~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~i 264 (390)
.+. ..+.+.. +++||+.... ..++.+|..+. .|+... + ..+...+.++.++.||+
T Consensus 269 -----~~~---~~~p~~~-----~~~vyv~~~~-----G~l~~~d~~tG~~~W~~~~----~-~~~~~ssp~i~g~~l~~ 325 (377)
T TIGR03300 269 -----ASS---YQGPAVD-----DNRLYVTDAD-----GVVVALDRRSGSELWKNDE----L-KYRQLTAPAVVGGYLVV 325 (377)
T ss_pred -----cCC---ccCceEe-----CCEEEEECCC-----CeEEEEECCCCcEEEcccc----c-cCCccccCEEECCEEEE
Confidence 111 1122333 7888887532 46888888765 476521 1 11222333456777776
Q ss_pred EcCcccCCCccccccccccceecCceEEeecCCCe--eeecccccccCCCCCCCCCcceeeeCCEEEEEe
Q psy1098 265 FGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT--WEDLSVEVTDDFLPKPRAGHCASVINSRMYIWS 332 (390)
Q Consensus 265 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 332 (390)
... ...++++|..+.+ |+. + ++......+.+..+++||+.+
T Consensus 326 ~~~-------------------~G~l~~~d~~tG~~~~~~-~-------~~~~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 326 GDF-------------------EGYLHWLSREDGSFVARL-K-------TDGSGIASPPVVVGDGLLVQT 368 (377)
T ss_pred EeC-------------------CCEEEEEECCCCCEEEEE-E-------cCCCccccCCEEECCEEEEEe
Confidence 532 3578889987664 432 2 222234455567788877554
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.26 E-value=0.17 Score=47.50 Aligned_cols=214 Identities=16% Similarity=0.206 Sum_probs=110.2
Q ss_pred CCCCCCCc--eeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCCCCCce
Q psy1098 4 LSDDNCPV--YRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIPPGCAA 79 (390)
Q Consensus 4 ~~~~~~~~--~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~ 79 (390)
|.++|..+ ..|+.-... +...+.++.++.+|+... ...++.+|..+++ |+... +.. ..
T Consensus 77 v~a~d~~tG~~~W~~~~~~-------~~~~~p~v~~~~v~v~~~-----~g~l~ald~~tG~~~W~~~~-----~~~-~~ 138 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLDE-------RLSGGVGADGGLVFVGTE-----KGEVIALDAEDGKELWRAKL-----SSE-VL 138 (377)
T ss_pred EEEEEccCCcEeeeecCCC-------CcccceEEcCCEEEEEcC-----CCEEEEEECCCCcEeeeecc-----Cce-ee
Confidence 56677654 478754311 112223444666776443 2468999987665 76432 111 12
Q ss_pred eeEEEeCCEEEEEcceeCCceeecceEEEEcCcc--eeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCC
Q psy1098 80 YGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKW--EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDE 157 (390)
Q Consensus 80 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~--~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 157 (390)
...+..++.+|+..+. ..++.+|+.+. .|+.-...+ ....+...+.+..++.+|+ |....
T Consensus 139 ~~p~v~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~-----~~~~~~~~sp~~~~~~v~~-~~~~g----- 200 (377)
T TIGR03300 139 SPPLVANGLVVVRTND-------GRLTALDAATGERLWTYSRVTP-----ALTLRGSASPVIADGGVLV-GFAGG----- 200 (377)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEEcCCCceeeEEccCCC-----ceeecCCCCCEEECCEEEE-ECCCC-----
Confidence 2234456777774331 34889998755 576533211 0011222333445665543 33221
Q ss_pred CCCCCccccccceeeeecCCCceeeeeccccCCC--CCCCC---ceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEec
Q psy1098 158 TKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGG--LPSPR---ESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDI 232 (390)
Q Consensus 158 ~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~--~p~~r---~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~ 232 (390)
.++.+|..+.. ..|+.-...+. ....+ ...+.... ++.+|+.... ..++.||+
T Consensus 201 -----------~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-----~~~vy~~~~~-----g~l~a~d~ 258 (377)
T TIGR03300 201 -----------KLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVVD-----GGQVYAVSYQ-----GRVAALDL 258 (377)
T ss_pred -----------EEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCccEEE-----CCEEEEEEcC-----CEEEEEEC
Confidence 37778877653 46865211000 00000 11122233 6777775432 46889998
Q ss_pred CCCe--EeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCC--eeee
Q psy1098 233 NSMT--WQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEM--TWED 302 (390)
Q Consensus 233 ~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~ 302 (390)
++.+ |+.. .+ ...+.++.+++||+... ...++++|..+. .|+.
T Consensus 259 ~tG~~~W~~~-----~~---~~~~p~~~~~~vyv~~~-------------------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 259 RSGRVLWKRD-----AS---SYQGPAVDDNRLYVTDA-------------------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCCcEEEeec-----cC---CccCceEeCCEEEEECC-------------------CCeEEEEECCCCcEEEcc
Confidence 7654 7662 11 11234456888888753 357889998765 4765
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.02 E-value=0.19 Score=43.59 Aligned_cols=216 Identities=22% Similarity=0.320 Sum_probs=116.4
Q ss_pred CCCCCCCc--eeEEecCCCCCCCCCCCceee-eEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCCCCCc
Q psy1098 4 LSDDNCPV--YRWRRIDDPAGPQPRPRHGHR-AVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIPPGCA 78 (390)
Q Consensus 4 ~~~~~~~~--~~W~~~~~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~ 78 (390)
|.++|+.+ ..|+.-.. +....... .+..++.+|+..+ ...++++|..+++ |+.- ++. +.
T Consensus 5 l~~~d~~tG~~~W~~~~~-----~~~~~~~~~~~~~~~~v~~~~~-----~~~l~~~d~~tG~~~W~~~-----~~~-~~ 68 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLG-----PGIGGPVATAVPDGGRVYVASG-----DGNLYALDAKTGKVLWRFD-----LPG-PI 68 (238)
T ss_dssp EEEEETTTTEEEEEEECS-----SSCSSEEETEEEETTEEEEEET-----TSEEEEEETTTSEEEEEEE-----CSS-CG
T ss_pred EEEEECCCCCEEEEEECC-----CCCCCccceEEEeCCEEEEEcC-----CCEEEEEECCCCCEEEEee-----ccc-cc
Confidence 45566644 47886431 11222222 3346888888843 4679999997776 5442 222 12
Q ss_pred eeeEEEeCCEEEEEcceeCCceeecceEEEEcCcc--eeE-EecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCC
Q psy1098 79 AYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKW--EWK-RLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGG 155 (390)
Q Consensus 79 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~--~W~-~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~ 155 (390)
....+..++.+|+..+. +.++.+|..+. .|+ .....+ ....+........++.+|+... ..
T Consensus 69 ~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~g--- 132 (238)
T PF13360_consen 69 SGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSP-----PAGVRSSSSPAVDGDRLYVGTS-SG--- 132 (238)
T ss_dssp GSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSC-----TCSTB--SEEEEETTEEEEEET-CS---
T ss_pred cceeeecccccccccce-------eeeEecccCCcceeeeecccccc-----ccccccccCceEecCEEEEEec-cC---
Confidence 22246778888887522 25889996655 687 343311 0012233334444677776543 11
Q ss_pred CCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCC-----CceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEE
Q psy1098 156 DETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSP-----RESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFML 230 (390)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~-----r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~ 230 (390)
.++.+|+.++. ..|+.....+..... ......+.. ++.+|+..+.. .+..+
T Consensus 133 -------------~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~g-----~~~~~ 188 (238)
T PF13360_consen 133 -------------KLVALDPKTGK-LLWKYPVGEPRGSSPISSFSDINGSPVIS-----DGRVYVSSGDG-----RVVAV 188 (238)
T ss_dssp -------------EEEEEETTTTE-EEEEEESSTT-SS--EEEETTEEEEEECC-----TTEEEEECCTS-----SEEEE
T ss_pred -------------cEEEEecCCCc-EEEEeecCCCCCCcceeeecccccceEEE-----CCEEEEEcCCC-----eEEEE
Confidence 37889988763 458763211111110 011222222 56888877542 26667
Q ss_pred ecCCCe--EeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCe--ee
Q psy1098 231 DINSMT--WQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT--WE 301 (390)
Q Consensus 231 d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--W~ 301 (390)
|..+.. |+.. .. . ........++.+|+.. . ...++++|+++.+ |+
T Consensus 189 d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~-~------------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 189 DLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS-S------------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T------------------TTEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-C------------------CCEEEEEECCCCCEEeE
Confidence 999887 8552 11 1 1112344567777775 3 4689999998875 65
No 58
>KOG2055|consensus
Probab=96.68 E-value=0.21 Score=46.36 Aligned_cols=180 Identities=13% Similarity=0.116 Sum_probs=90.8
Q ss_pred CceeEEecCCCCCCCCCCCceeeeEEe-CCEEEEEccCCCCcccceEEEECCCCcE-EeeeecCCCCCCCceeeEEEeCC
Q psy1098 10 PVYRWRRIDDPAGPQPRPRHGHRAVAI-KDLMLVFGGGNEGIVEELHVFNTATNQW-FIPTLKGDIPPGCAAYGIVVDNT 87 (390)
Q Consensus 10 ~~~~W~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~~~~ 87 (390)
.+...+++....-..|..+.--++-.. .-.+.+.+|.+.. -.++..|-..+.- +.+... ..|. ....+...+.
T Consensus 196 ~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~--lrifqvDGk~N~~lqS~~l~-~fPi--~~a~f~p~G~ 270 (514)
T KOG2055|consen 196 GTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGT--LRIFQVDGKVNPKLQSIHLE-KFPI--QKAEFAPNGH 270 (514)
T ss_pred ceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCc--EEEEEecCccChhheeeeec-cCcc--ceeeecCCCc
Confidence 345566666433333332222222222 3348888885543 3345555544442 111111 1222 2222333455
Q ss_pred EEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccc
Q psy1098 88 RVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYL 167 (390)
Q Consensus 88 ~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 167 (390)
...+++|+. .-+|.||.++.+.+++.++.+ .+..-...--+..++.++++-|..+.
T Consensus 271 ~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g----~e~~~~e~FeVShd~~fia~~G~~G~-------------- 326 (514)
T KOG2055|consen 271 SVIFTSGRR------KYLYSYDLETAKVTKLKPPYG----VEEKSMERFEVSHDSNFIAIAGNNGH-------------- 326 (514)
T ss_pred eEEEecccc------eEEEEeeccccccccccCCCC----cccchhheeEecCCCCeEEEcccCce--------------
Confidence 477777763 348999999999998887532 11111111123334556666676553
Q ss_pred cceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCe
Q psy1098 168 DDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 168 ~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~ 236 (390)
++.+...+ .+|.. .-.++......+... ....|++.||. ..||++|+..+.
T Consensus 327 --I~lLhakT---~eli~---s~KieG~v~~~~fsS-----dsk~l~~~~~~-----GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 327 --IHLLHAKT---KELIT---SFKIEGVVSDFTFSS-----DSKELLASGGT-----GEVYVWNLRQNS 377 (514)
T ss_pred --EEeehhhh---hhhhh---eeeeccEEeeEEEec-----CCcEEEEEcCC-----ceEEEEecCCcc
Confidence 55555554 45543 111222222222222 25677777776 479999999874
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.38 E-value=0.58 Score=40.52 Aligned_cols=179 Identities=21% Similarity=0.347 Sum_probs=99.2
Q ss_pred cceEEEECCCCc--EEeeeecCCCCCCCceee--EEEeCCEEEEEcceeCCceeecceEEEEcCcc--eeEEecCCCCCC
Q psy1098 52 EELHVFNTATNQ--WFIPTLKGDIPPGCAAYG--IVVDNTRVLIFGGMVEYGKYSSDLYELQASKW--EWKRLKPKPPRF 125 (390)
Q Consensus 52 ~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~--~W~~~~~~~~~~ 125 (390)
..+..+|+.+++ |+.-. ........ .+..++.+|+..+ ...++++|+.+. .|+.-.+
T Consensus 3 g~l~~~d~~tG~~~W~~~~-----~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~~----- 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL-----GPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDLP----- 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC-----SSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEECS-----
T ss_pred CEEEEEECCCCCEEEEEEC-----CCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeecc-----
Confidence 357788887666 66522 11122222 3447888888732 245899998655 5766432
Q ss_pred CCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeee-ccccCCCCCCCCceeeeEEe
Q psy1098 126 GSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWD-MPGTYGGLPSPRESHTACSW 204 (390)
Q Consensus 126 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~~ 204 (390)
.+........++.+|+...-. .++.+|..+.. ..|+ .....+..+ .+........
T Consensus 66 -----~~~~~~~~~~~~~v~v~~~~~-----------------~l~~~d~~tG~-~~W~~~~~~~~~~~-~~~~~~~~~~ 121 (238)
T PF13360_consen 66 -----GPISGAPVVDGGRVYVGTSDG-----------------SLYALDAKTGK-VLWSIYLTSSPPAG-VRSSSSPAVD 121 (238)
T ss_dssp -----SCGGSGEEEETTEEEEEETTS-----------------EEEEEETTTSC-EEEEEEE-SSCTCS-TB--SEEEEE
T ss_pred -----ccccceeeeccccccccccee-----------------eeEecccCCcc-eeeeeccccccccc-cccccCceEe
Confidence 122222466788888765211 48889977654 5798 332211111 2222333333
Q ss_pred eccCCCcEEEEEcCCCCCccCcEEEEecCCCe--EeecccCCCCCCC--------CceeeEEEECCEEEEEcCcccCCCc
Q psy1098 205 TDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT--WQKPQILGPQPLP--------RSLHTACVIGDRMFIFGGWVPILKD 274 (390)
Q Consensus 205 ~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~--W~~~~~~~~~p~~--------r~~~~~~~~~~~i~i~GG~~~~~~~ 274 (390)
++.+|+.... ..++.+|+++++ |+.. ...+.. ......+..++.+|+..+.
T Consensus 122 -----~~~~~~~~~~-----g~l~~~d~~tG~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 182 (238)
T PF13360_consen 122 -----GDRLYVGTSS-----GKLVALDPKTGKLLWKYP---VGEPRGSSPISSFSDINGSPVISDGRVYVSSGD------ 182 (238)
T ss_dssp -----TTEEEEEETC-----SEEEEEETTTTEEEEEEE---SSTT-SS--EEEETTEEEEEECCTTEEEEECCT------
T ss_pred -----cCEEEEEecc-----CcEEEEecCCCcEEEEee---cCCCCCCcceeeecccccceEEECCEEEEEcCC------
Confidence 5666665531 578999998775 7762 222211 1123444446788888763
Q ss_pred cccccccccceecCceEEeecCCCe--eeec
Q psy1098 275 ESRSLHEKEWKCSNQLACLHLPEMT--WEDL 303 (390)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~d~~~~~--W~~v 303 (390)
..+..+|.++.+ |+..
T Consensus 183 -------------g~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 183 -------------GRVVAVDLATGEKLWSKP 200 (238)
T ss_dssp -------------SSEEEEETTTTEEEEEEC
T ss_pred -------------CeEEEEECCCCCEEEEec
Confidence 235666988886 7443
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.98 E-value=0.58 Score=43.33 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=71.1
Q ss_pred eEEEE-CCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEE
Q psy1098 136 SFTLI-GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLI 214 (390)
Q Consensus 136 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~ 214 (390)
.++.+ +++|+.++... ....||..+. .-. ..+.++.+.....++.+ .++||
T Consensus 70 ~F~al~gskIv~~d~~~-----------------~t~vyDt~t~---av~---~~P~l~~pk~~pisv~V-----G~~LY 121 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQSG-----------------RTLVYDTDTR---AVA---TGPRLHSPKRCPISVSV-----GDKLY 121 (342)
T ss_pred EEEEecCCeEEEEcCCC-----------------CeEEEECCCC---eEe---ccCCCCCCCcceEEEEe-----CCeEE
Confidence 34444 78888885542 2678888762 222 23445555555566666 77799
Q ss_pred EEcCCCCCc--------cCcEEEEe--------cCCCeEeecccCCCCCCCCc-------eeeEEEE-CCEEEE-EcCcc
Q psy1098 215 IYGGMSGNR--------LSDLFMLD--------INSMTWQKPQILGPQPLPRS-------LHTACVI-GDRMFI-FGGWV 269 (390)
Q Consensus 215 v~GG~~~~~--------~~~v~~~d--------~~~~~W~~~~~~~~~p~~r~-------~~~~~~~-~~~i~i-~GG~~ 269 (390)
++....... .-++..|+ .....|+.+ +++|..+. -.+.+++ +..|+| .-|.
T Consensus 122 ~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~L---P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~- 197 (342)
T PF07893_consen 122 AMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSL---PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR- 197 (342)
T ss_pred EeeccCccccccCccceeEEEeccccccccccCCCcceEEcC---CCCCccccCCcccceEEEEEEecCCeEEEEecCC-
Confidence 998763221 11233344 223467774 33444332 3455556 567887 3332
Q ss_pred cCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 270 PILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
....+.||..+.+|+++..
T Consensus 198 -----------------~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 198 -----------------RWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred -----------------ceEEEEEEcCCcceeeccc
Confidence 1257899999999999976
No 61
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.85 E-value=1.2 Score=39.22 Aligned_cols=194 Identities=11% Similarity=0.099 Sum_probs=102.2
Q ss_pred CCEEEEEccCCCCcccceEEEEC-----CCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcC
Q psy1098 37 KDLMLVFGGGNEGIVEELHVFNT-----ATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQAS 111 (390)
Q Consensus 37 ~~~iyv~GG~~~~~~~~~~~~d~-----~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~ 111 (390)
.+++|++.+.... .+..|.. ..+...... .+|.+-.+...++.++.+|..-. .++.|.+||+.
T Consensus 30 ~~~iy~~~~~~~~---~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~ 97 (250)
T PF02191_consen 30 SEKIYVTSGFSGN---TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLT 97 (250)
T ss_pred CCCEEEECccCCC---EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEECc
Confidence 4668888874433 4444422 233333333 45666667777888888887543 34679999999
Q ss_pred cceeEEecCCCCC--CCCCCCCCccce---EEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCce-eeeec
Q psy1098 112 KWEWKRLKPKPPR--FGSPPCPRLGHS---FTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHT-TVWDM 185 (390)
Q Consensus 112 ~~~W~~~~~~~~~--~~~~p~~r~~~~---~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~W~~ 185 (390)
+++-.....++.. .+..|.....++ +++.++-|+|+=...... ..--+-++|+.+..- ..|..
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-----------g~ivvskld~~tL~v~~tw~T 166 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-----------GNIVVSKLDPETLSVEQTWNT 166 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-----------CcEEEEeeCcccCceEEEEEe
Confidence 8865522222211 011122222222 333455677663333221 011244555544332 45875
Q ss_pred cccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE---CCEE
Q psy1098 186 PGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI---GDRM 262 (390)
Q Consensus 186 ~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~i 262 (390)
..+....+.+-. + .|.+|++...+.....-.+.||+.+++=..+.. ..+.+-..++++.. +.+|
T Consensus 167 -----~~~k~~~~naFm-v-----CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~L 233 (250)
T PF02191_consen 167 -----SYPKRSAGNAFM-V-----CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKL 233 (250)
T ss_pred -----ccCchhhcceee-E-----eeEEEEEEECCCCCcEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeE
Confidence 244444444333 3 688998876654333456899999876554321 22333334444444 5778
Q ss_pred EEEc
Q psy1098 263 FIFG 266 (390)
Q Consensus 263 ~i~G 266 (390)
|+.-
T Consensus 234 Y~wd 237 (250)
T PF02191_consen 234 YAWD 237 (250)
T ss_pred EEEE
Confidence 8884
No 62
>KOG2055|consensus
Probab=94.95 E-value=0.56 Score=43.65 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=58.7
Q ss_pred CcE-EEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecC
Q psy1098 210 NTK-LIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSN 288 (390)
Q Consensus 210 ~~~-i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 288 (390)
+++ .++++|+. .-+|.||+.+.+-+++.....++.+-...-.+..++.++++-|. ..
T Consensus 268 ~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~------------------~G 325 (514)
T KOG2055|consen 268 NGHSVIFTSGRR----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN------------------NG 325 (514)
T ss_pred CCceEEEecccc----eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc------------------Cc
Confidence 444 67777753 56899999999999977655555332222233445556666665 46
Q ss_pred ceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccC
Q psy1098 289 QLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRD 335 (390)
Q Consensus 289 ~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 335 (390)
-|+++...+++|..--. ++-.....+-..-+..||+.||+.
T Consensus 326 ~I~lLhakT~eli~s~K------ieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSFK------IEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred eEEeehhhhhhhhheee------eccEEeeEEEecCCcEEEEEcCCc
Confidence 78889888888753221 222222222223346688888874
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.60 E-value=2.1 Score=38.28 Aligned_cols=112 Identities=15% Similarity=0.267 Sum_probs=65.0
Q ss_pred ecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEE-CCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCce
Q psy1098 102 SSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI-GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHT 180 (390)
Q Consensus 102 ~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 180 (390)
...+-.||+.+.+|..+.... .... .++.-. ++++|+.|-.+... .-...+-.||..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i-------~G~V-~~l~~~~~~~Llv~G~ft~~~----------~~~~~la~yd~~~--- 73 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI-------SGTV-TDLQWASNNQLLVGGNFTLNG----------TNSSNLATYDFKN--- 73 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc-------eEEE-EEEEEecCCEEEEEEeeEECC----------CCceeEEEEecCC---
Confidence 466778999999999875421 1111 122222 57888877655442 1233477888887
Q ss_pred eeeeccccC--CCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecc
Q psy1098 181 TVWDMPGTY--GGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQ 241 (390)
Q Consensus 181 ~~W~~~~~~--~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~ 241 (390)
.+|..+... ..+|.+......... +..++++.|.. .....-+..| +..+|..+.
T Consensus 74 ~~w~~~~~~~s~~ipgpv~a~~~~~~----d~~~~~~aG~~-~~g~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 74 QTWSSLGGGSSNSIPGPVTALTFISN----DGSNFWVAGRS-ANGSTFLMKY--DGSSWSSIG 129 (281)
T ss_pred CeeeecCCcccccCCCcEEEEEeecc----CCceEEEecee-cCCCceEEEE--cCCceEecc
Confidence 689886652 235555322222222 25678888865 2223345666 577899864
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.55 E-value=1.8 Score=40.03 Aligned_cols=117 Identities=14% Similarity=0.232 Sum_probs=69.5
Q ss_pred eCCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCcee------ecceEEEE
Q psy1098 36 IKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKY------SSDLYELQ 109 (390)
Q Consensus 36 ~~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~~v~~~d 109 (390)
.+++|+..+.. ..+.+||..+..-...+ .++.+...-.++.++++||++......... .-++..|+
T Consensus 75 ~gskIv~~d~~-----~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS-----GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC-----CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 48889988764 44899999988766544 444444445667778899999877432211 11233333
Q ss_pred --------cCcceeEEecCCCCCCCCCCCCCcc-------ceEEEE-CCEEEE-EcCccCCCCCCCCCCCccccccceee
Q psy1098 110 --------ASKWEWKRLKPKPPRFGSPPCPRLG-------HSFTLI-GNKVYL-FGGLANSGGDETKPTPSYKYLDDFYT 172 (390)
Q Consensus 110 --------~~~~~W~~~~~~~~~~~~~p~~r~~-------~~~~~~-~~~l~v-~GG~~~~~~~~~~~~~~~~~~~~~~~ 172 (390)
...+.|+.+++- |..+.. .+-+++ +..|+| +-|... -.|.
T Consensus 147 ~~~~~~~~~~~w~W~~LP~P-------Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------GTys 203 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPP-------PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------GTYS 203 (342)
T ss_pred cccccccCCCcceEEcCCCC-------CccccCCcccceEEEEEEecCCeEEEEecCCce----------------EEEE
Confidence 334578887652 222211 222333 567777 333211 2688
Q ss_pred eecCCCceeeeecc
Q psy1098 173 LELKSGHTTVWDMP 186 (390)
Q Consensus 173 ~d~~~~~~~~W~~~ 186 (390)
||..+ .+|+++
T Consensus 204 fDt~~---~~W~~~ 214 (342)
T PF07893_consen 204 FDTES---HEWRKH 214 (342)
T ss_pred EEcCC---cceeec
Confidence 99887 589984
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.24 E-value=1.8 Score=38.70 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=55.5
Q ss_pred cccceEEEECCCCcEEeeeecCCCCCCCceeeEEE-eCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCC
Q psy1098 50 IVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVV-DNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSP 128 (390)
Q Consensus 50 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~ 128 (390)
....+..||..+.+|..+... -.. .-.++.. .+++||+.|-..-.+.....+-.||..+.+|..+..... ...
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s--~~i 87 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS--NSI 87 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--ccC
Confidence 356789999999999886621 111 1122333 366777777554333234557789999999988875210 223
Q ss_pred CCCCccceEEEEC-CEEEEEcCc
Q psy1098 129 PCPRLGHSFTLIG-NKVYLFGGL 150 (390)
Q Consensus 129 p~~r~~~~~~~~~-~~l~v~GG~ 150 (390)
|.+..-......+ +.+++.|..
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred CCcEEEEEeeccCCceEEEecee
Confidence 4443222222223 467777665
No 66
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.10 E-value=3.1 Score=34.99 Aligned_cols=154 Identities=16% Similarity=0.289 Sum_probs=76.5
Q ss_pred eeEEeCCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCC--CCCceeeEEEeC-CEEEEEcceeCCceeecceEEE
Q psy1098 32 RAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIP--PGCAAYGIVVDN-TRVLIFGGMVEYGKYSSDLYEL 108 (390)
Q Consensus 32 ~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p--~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~~ 108 (390)
+++...+++|+|-| +.+|.++...............| +..-..++.... +++|+|-|. .+|+|
T Consensus 11 A~~~~~g~~y~FkG------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~--------~yw~~ 76 (194)
T cd00094 11 AVTTLRGELYFFKG------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD--------KYWVY 76 (194)
T ss_pred eEEEeCCEEEEEeC------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC--------EEEEE
Confidence 34455689999988 56677776422111111111111 112233333333 789999764 38888
Q ss_pred EcCcceeEEecCCCCCCCCCC-CCCccceEEEE-CCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCce------
Q psy1098 109 QASKWEWKRLKPKPPRFGSPP-CPRLGHSFTLI-GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHT------ 180 (390)
Q Consensus 109 d~~~~~W~~~~~~~~~~~~~p-~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------ 180 (390)
+..+.....-..+.. .+.++ ......+...- ++++|+|.|.. .++|+......
T Consensus 77 ~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg~~------------------y~ry~~~~~~v~~~yP~ 137 (194)
T cd00094 77 TGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKGDK------------------YWRYDEKTQKMDPGYPK 137 (194)
T ss_pred cCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeCCE------------------EEEEeCCCccccCCCCc
Confidence 866422211111110 01111 12233333332 57999998742 45665533110
Q ss_pred ---eeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCe
Q psy1098 181 ---TVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 181 ---~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~ 236 (390)
+.|. .+|.. ...+. .. .++++|++-| +..|+||..+.+
T Consensus 138 ~i~~~w~------g~p~~-idaa~-~~----~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 138 LIETDFP------GVPDK-VDAAF-RW----LDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred chhhcCC------CcCCC-cceeE-Ee----CCCcEEEEEC------CEEEEEeCccce
Confidence 1232 13322 22222 23 1488999988 679999988765
No 67
>PRK13684 Ycf48-like protein; Provisional
Probab=93.74 E-value=5.6 Score=36.71 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=57.2
Q ss_pred eeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEe--cCCCeEeecccCCCCCCCCceeeEEEE
Q psy1098 181 TVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLD--INSMTWQKPQILGPQPLPRSLHTACVI 258 (390)
Q Consensus 181 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d--~~~~~W~~~~~~~~~p~~r~~~~~~~~ 258 (390)
.+|+.+.. +..+.-.++...+ ++.++++|.. + ..++. -.-.+|+.+.. +........++++..
T Consensus 204 ~tW~~~~~----~~~~~l~~i~~~~----~g~~~~vg~~-G-----~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 204 TAWTPHQR----NSSRRLQSMGFQP----DGNLWMLARG-G-----QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYR 268 (334)
T ss_pred CeEEEeeC----CCcccceeeeEcC----CCCEEEEecC-C-----EEEEccCCCCCccccccC-CccccccceeeEEEc
Confidence 47987532 2333334444432 6778888753 1 23332 23457997421 111111222333333
Q ss_pred -CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeee-CCEEEEEecc
Q psy1098 259 -GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI-NSRMYIWSGR 334 (390)
Q Consensus 259 -~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~ 334 (390)
++.+++.|.. ..++.-.-...+|+.+.... .+| .....++.. ++++|++|..
T Consensus 269 ~~~~~~~~G~~-------------------G~v~~S~d~G~tW~~~~~~~---~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 269 TPGEIWAGGGN-------------------GTLLVSKDGGKTWEKDPVGE---EVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CCCCEEEEcCC-------------------CeEEEeCCCCCCCeECCcCC---CCC--cceEEEEEeCCCceEEECCC
Confidence 5678888752 23343334567899986410 022 233444444 6778777765
No 68
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.52 E-value=8.1 Score=37.81 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=41.6
Q ss_pred CcEEEEecCCCe--EeecccCCC----CCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCC
Q psy1098 225 SDLFMLDINSMT--WQKPQILGP----QPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEM 298 (390)
Q Consensus 225 ~~v~~~d~~~~~--W~~~~~~~~----~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 298 (390)
..++.+|..+.+ |+.-..... ...+......++.++.||+ |.. ...++.+|.++.
T Consensus 366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~------------------dG~l~ald~~tG 426 (488)
T cd00216 366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAA------------------DGYFRAFDATTG 426 (488)
T ss_pred eEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECC------------------CCeEEEEECCCC
Confidence 458888887654 887221000 0012222233444555544 433 357899998877
Q ss_pred e--eeecccccccCCCCCCCCCcce-eeeCCEEEEE
Q psy1098 299 T--WEDLSVEVTDDFLPKPRAGHCA-SVINSRMYIW 331 (390)
Q Consensus 299 ~--W~~v~~~~~~~~~p~~r~~~~~-~~~~~~l~v~ 331 (390)
+ |+. . ++.+....-+ ...++++||.
T Consensus 427 ~~lW~~-~-------~~~~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 427 KELWKF-R-------TPSGIQATPMTYEVNGKQYVG 454 (488)
T ss_pred ceeeEE-E-------CCCCceEcCEEEEeCCEEEEE
Confidence 5 774 2 3322222222 2458898887
No 69
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.37 E-value=1.1 Score=34.93 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=58.7
Q ss_pred EEeCCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEE-EcCc
Q psy1098 34 VAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYEL-QASK 112 (390)
Q Consensus 34 ~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~-d~~~ 112 (390)
+.+||-+|-.+-........+.+||..+.+|+.+..+...........++..+++|-++.-........-++|++ |...
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 356788887777544566889999999999998874311224455667778888888765443222223578887 4566
Q ss_pred ceeEEecC
Q psy1098 113 WEWKRLKP 120 (390)
Q Consensus 113 ~~W~~~~~ 120 (390)
.+|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78987643
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.08 E-value=5.6 Score=34.71 Aligned_cols=205 Identities=9% Similarity=0.088 Sum_probs=103.9
Q ss_pred CCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEE--eCCEEEEEcceeCCceeecceEEEEcCcce
Q psy1098 37 KDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVV--DNTRVLIFGGMVEYGKYSSDLYELQASKWE 114 (390)
Q Consensus 37 ~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~ 114 (390)
++.+|+..- ....++.+|+.+..-..+. .+. ..+++. .++++|+.... .+..+|+.+.+
T Consensus 11 ~g~l~~~D~----~~~~i~~~~~~~~~~~~~~----~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDI----PGGRIYRVDPDTGEVEVID----LPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEET----TTTEEEEEETTTTEEEEEE----SSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTE
T ss_pred CCEEEEEEc----CCCEEEEEECCCCeEEEEe----cCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCc
Confidence 456666643 2357999999888776655 222 233333 36788886543 24566999988
Q ss_pred eEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCC
Q psy1098 115 WKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPS 194 (390)
Q Consensus 115 W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~ 194 (390)
++.+..... +..+..+.+-.++.-++.+|+---....... .....+++++... +...+.. .+.
T Consensus 72 ~~~~~~~~~--~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~--------~~~g~v~~~~~~~----~~~~~~~--~~~- 134 (246)
T PF08450_consen 72 VTVLADLPD--GGVPFNRPNDVAVDPDGNLYVTDSGGGGASG--------IDPGSVYRIDPDG----KVTVVAD--GLG- 134 (246)
T ss_dssp EEEEEEEET--TCSCTEEEEEEEE-TTS-EEEEEECCBCTTC--------GGSEEEEEEETTS----EEEEEEE--EES-
T ss_pred EEEEeeccC--CCcccCCCceEEEcCCCCEEEEecCCCcccc--------ccccceEEECCCC----eEEEEec--Ccc-
Confidence 887765310 1112333333333336788874221111000 1115688888872 2222111 111
Q ss_pred CCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCC--CeEeecccCCCCCCCCcee-eEEE-ECCEEEEEcCccc
Q psy1098 195 PRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINS--MTWQKPQILGPQPLPRSLH-TACV-IGDRMFIFGGWVP 270 (390)
Q Consensus 195 ~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~--~~W~~~~~~~~~p~~r~~~-~~~~-~~~~i~i~GG~~~ 270 (390)
.....+..++ +..+|+.--. ...|++|++.. ..+.........+...... ++++ -++.||+..-.
T Consensus 135 --~pNGi~~s~d---g~~lyv~ds~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-- 203 (246)
T PF08450_consen 135 --FPNGIAFSPD---GKTLYVADSF----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-- 203 (246)
T ss_dssp --SEEEEEEETT---SSEEEEEETT----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET--
T ss_pred --cccceEECCc---chheeecccc----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC--
Confidence 1133444432 4567765332 25699998863 3233322122222222222 2333 36889987321
Q ss_pred CCCccccccccccceecCceEEeecCCCeeeecc
Q psy1098 271 ILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304 (390)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~ 304 (390)
...|++||++...-..+.
T Consensus 204 ----------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 204 ----------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp ----------------TTEEEEEETTSCEEEEEE
T ss_pred ----------------CCEEEEECCCccEEEEEc
Confidence 468999999977677676
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.02 E-value=5.7 Score=34.66 Aligned_cols=165 Identities=7% Similarity=0.023 Sum_probs=81.2
Q ss_pred CCEEEEEccCCCCcccceEEEECCCCcEEeeeec--CCCCCCCceeeEEEeCCEEEEEcceeCCceee--cceEEEEcCc
Q psy1098 37 KDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLK--GDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYS--SDLYELQASK 112 (390)
Q Consensus 37 ~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~v~~~d~~~ 112 (390)
++.+|+... ..+..+|+.+++++.+... +..+..+..-.++.-+++||+.--........ ..++++++.
T Consensus 51 ~g~l~v~~~------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~- 123 (246)
T PF08450_consen 51 DGRLYVADS------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD- 123 (246)
T ss_dssp TSEEEEEET------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-
T ss_pred CCEEEEEEc------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-
Confidence 567777665 3346679999999887753 11133344444455567777753322111111 569999999
Q ss_pred ceeEEecCCCCCCCCCCCCCccceEEEEC-CEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCC
Q psy1098 113 WEWKRLKPKPPRFGSPPCPRLGHSFTLIG-NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGG 191 (390)
Q Consensus 113 ~~W~~~~~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~ 191 (390)
.+...+... ..+.+.-+..-+ +.+|+.- ...+.+++|++..... .+........
T Consensus 124 ~~~~~~~~~--------~~~pNGi~~s~dg~~lyv~d----------------s~~~~i~~~~~~~~~~-~~~~~~~~~~ 178 (246)
T PF08450_consen 124 GKVTVVADG--------LGFPNGIAFSPDGKTLYVAD----------------SFNGRIWRFDLDADGG-ELSNRRVFID 178 (246)
T ss_dssp SEEEEEEEE--------ESSEEEEEEETTSSEEEEEE----------------TTTTEEEEEEEETTTC-CEEEEEEEEE
T ss_pred CeEEEEecC--------cccccceEECCcchheeecc----------------cccceeEEEecccccc-ceeeeeeEEE
Confidence 555444321 122222222223 4677632 2233488888864321 1211110111
Q ss_pred CCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeec
Q psy1098 192 LPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKP 240 (390)
Q Consensus 192 ~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~ 240 (390)
.+......-...+. .+++||+..-.. ..|++||+....-..+
T Consensus 179 ~~~~~g~pDG~~vD---~~G~l~va~~~~----~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 179 FPGGPGYPDGLAVD---SDGNLWVADWGG----GRIVVFDPDGKLLREI 220 (246)
T ss_dssp -SSSSCEEEEEEEB---TTS-EEEEEETT----TEEEEEETTSCEEEEE
T ss_pred cCCCCcCCCcceEc---CCCCEEEEEcCC----CEEEEECCCccEEEEE
Confidence 11111112222221 278899883211 5799999996555554
No 72
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.84 E-value=7.2 Score=35.32 Aligned_cols=238 Identities=15% Similarity=0.233 Sum_probs=99.4
Q ss_pred eeEEecCCCCCCCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEEC-CCCcEEeeeecCCCCCCCceeeE-EEeCCEE
Q psy1098 12 YRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNT-ATNQWFIPTLKGDIPPGCAAYGI-VVDNTRV 89 (390)
Q Consensus 12 ~~W~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~-~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~i 89 (390)
.+|+.+.... ..+......++...++..||.|. ..+..... .-.+|+.+.....+| -..+.+ +..++.+
T Consensus 47 ~tW~~~~~~~-~~~~~~~l~~I~f~~~~g~ivG~------~g~ll~T~DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~~ 117 (302)
T PF14870_consen 47 KTWQPVSLDL-DNPFDYHLNSISFDGNEGWIVGE------PGLLLHTTDGGKTWERVPLSSKLP--GSPFGITALGDGSA 117 (302)
T ss_dssp SS-EE------S-----EEEEEEEETTEEEEEEE------TTEEEEESSTTSS-EE----TT-S--S-EEEEEEEETTEE
T ss_pred ccccccccCC-CccceeeEEEEEecCCceEEEcC------CceEEEecCCCCCcEEeecCCCCC--CCeeEEEEcCCCcE
Confidence 4798875211 11111223344445788888774 12333333 467799987432233 233333 3455677
Q ss_pred EEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEE-CCEEEEEcCccCCCCCCCCCCCcccccc
Q psy1098 90 LIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI-GNKVYLFGGLANSGGDETKPTPSYKYLD 168 (390)
Q Consensus 90 yv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 168 (390)
+++|.. ..+|+-.-.-.+|+.+.... .-.-..+... ++++++++-...
T Consensus 118 ~l~~~~-------G~iy~T~DgG~tW~~~~~~~--------~gs~~~~~r~~dG~~vavs~~G~---------------- 166 (302)
T PF14870_consen 118 ELAGDR-------GAIYRTTDGGKTWQAVVSET--------SGSINDITRSSDGRYVAVSSRGN---------------- 166 (302)
T ss_dssp EEEETT---------EEEESSTTSSEEEEE-S------------EEEEEE-TTS-EEEEETTSS----------------
T ss_pred EEEcCC-------CcEEEeCCCCCCeeEcccCC--------cceeEeEEECCCCcEEEEECccc----------------
Confidence 776643 23666555666899876421 1112222233 456666654332
Q ss_pred cee-eeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEe--cCCCeEeecccCCC
Q psy1098 169 DFY-TLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLD--INSMTWQKPQILGP 245 (390)
Q Consensus 169 ~~~-~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d--~~~~~W~~~~~~~~ 245 (390)
++ ..|.-. ..|+... .+..|.-.++...+ ++.++|+. ..+ .+..=+ ....+|.+. .
T Consensus 167 -~~~s~~~G~---~~w~~~~----r~~~~riq~~gf~~----~~~lw~~~-~Gg----~~~~s~~~~~~~~w~~~----~ 225 (302)
T PF14870_consen 167 -FYSSWDPGQ---TTWQPHN----RNSSRRIQSMGFSP----DGNLWMLA-RGG----QIQFSDDPDDGETWSEP----I 225 (302)
T ss_dssp -EEEEE-TT----SS-EEEE------SSS-EEEEEE-T----TS-EEEEE-TTT----EEEEEE-TTEEEEE-------B
T ss_pred -EEEEecCCC---ccceEEc----cCccceehhceecC----CCCEEEEe-CCc----EEEEccCCCCccccccc----c
Confidence 22 233332 4687643 33444445555553 67888875 221 233333 245568772 2
Q ss_pred CCCCCcee---eEEEE-CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCCCCcce
Q psy1098 246 QPLPRSLH---TACVI-GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCA 321 (390)
Q Consensus 246 ~p~~r~~~---~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~ 321 (390)
.|....+. .++.. ++.+++.||. ..+++=.-..++|++.... .+.+---...
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~-------------------G~l~~S~DgGktW~~~~~~-----~~~~~n~~~i 281 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGGS-------------------GTLLVSTDGGKTWQKDRVG-----ENVPSNLYRI 281 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEEST-------------------T-EEEESSTTSS-EE-GGG-----TTSSS---EE
T ss_pred CCcccCceeeEEEEecCCCCEEEEeCC-------------------ccEEEeCCCCccceECccc-----cCCCCceEEE
Confidence 23322222 23333 5889999984 4555444467789998752 1222222233
Q ss_pred eee-CCEEEEEecc
Q psy1098 322 SVI-NSRMYIWSGR 334 (390)
Q Consensus 322 ~~~-~~~l~v~GG~ 334 (390)
+.. +++-+++|-.
T Consensus 282 ~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 282 VFVNPDKGFVLGQD 295 (302)
T ss_dssp EEEETTEEEEE-ST
T ss_pred EEcCCCceEEECCC
Confidence 333 5688888854
No 73
>smart00284 OLF Olfactomedin-like domains.
Probab=91.00 E-value=10 Score=33.27 Aligned_cols=192 Identities=11% Similarity=0.093 Sum_probs=98.6
Q ss_pred CEEEEEccCCCCcccceEEEE----CCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcc
Q psy1098 38 DLMLVFGGGNEGIVEELHVFN----TATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKW 113 (390)
Q Consensus 38 ~~iyv~GG~~~~~~~~~~~~d----~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~ 113 (390)
+++|++.+.. ...+.+..|. +......... .+|.+-.+...++.++.+|..-.. +..+.+||+.++
T Consensus 35 ~~~wv~~~~~-~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~ 104 (255)
T smart00284 35 SLYWYMPLNT-RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTE 104 (255)
T ss_pred ceEEEEcccc-CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEecC------CccEEEEECCCC
Confidence 5678776532 1123455553 2344443333 467777788889999999985332 366899999998
Q ss_pred eeEEecCCCCC--CCCCCCCCccce---EEEECCEEEEE-cCccCCCCCCCCCCCccccccceeeeecCCCce-eeeecc
Q psy1098 114 EWKRLKPKPPR--FGSPPCPRLGHS---FTLIGNKVYLF-GGLANSGGDETKPTPSYKYLDDFYTLELKSGHT-TVWDMP 186 (390)
Q Consensus 114 ~W~~~~~~~~~--~~~~p~~r~~~~---~~~~~~~l~v~-GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~W~~~ 186 (390)
+-.....++.. .+..+-...+++ +++.++-|.|+ ......+ .--+.++|+.+..- +.|..
T Consensus 105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g------------~ivvSkLnp~tL~ve~tW~T- 171 (255)
T smart00284 105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG------------KIVISKLNPATLTIENTWIT- 171 (255)
T ss_pred cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC------------CEEEEeeCcccceEEEEEEc-
Confidence 76544333211 111222111222 23344556555 2211111 01134555544322 45875
Q ss_pred ccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCC--ceeeEEEE---CCE
Q psy1098 187 GTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPR--SLHTACVI---GDR 261 (390)
Q Consensus 187 ~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r--~~~~~~~~---~~~ 261 (390)
..+...++ .+..+ .+.+|++-........-.+.||+.+.+=.. ...|.+. ..++++-. +.+
T Consensus 172 ----~~~k~sa~-naFmv-----CGvLY~~~s~~~~~~~I~yayDt~t~~~~~----~~i~f~n~y~~~s~l~YNP~d~~ 237 (255)
T smart00284 172 ----TYNKRSAS-NAFMI-----CGILYVTRSLGSKGEKVFYAYDTNTGKEGH----LDIPFENMYEYISMLDYNPNDRK 237 (255)
T ss_pred ----CCCccccc-ccEEE-----eeEEEEEccCCCCCcEEEEEEECCCCccce----eeeeeccccccceeceeCCCCCe
Confidence 24444343 33344 688999864222223446899998865333 2344443 33344433 567
Q ss_pred EEEEc
Q psy1098 262 MFIFG 266 (390)
Q Consensus 262 i~i~G 266 (390)
||+.-
T Consensus 238 LY~wd 242 (255)
T smart00284 238 LYAWN 242 (255)
T ss_pred EEEEe
Confidence 88874
No 74
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=90.82 E-value=8.9 Score=32.21 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecc--cC--CCCCCCCceeeEEEE-CCEEEEEcCcccCCCccccccccccc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQ--IL--GPQPLPRSLHTACVI-GDRMFIFGGWVPILKDESRSLHEKEW 284 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~--~~--~~~p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~ 284 (390)
++++|++-| +..|+||....+...-. .. .-+..+..-.++... ++++|+|-|
T Consensus 110 ~~~~yfFkg------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g----------------- 166 (194)
T cd00094 110 NGKTYFFKG------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKG----------------- 166 (194)
T ss_pred CCEEEEEeC------CEEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEEC-----------------
Confidence 689999988 57889987665543200 00 001122212233334 488999977
Q ss_pred eecCceEEeecCCCe
Q psy1098 285 KCSNQLACLHLPEMT 299 (390)
Q Consensus 285 ~~~~~~~~~d~~~~~ 299 (390)
+..++||..+.+
T Consensus 167 ---~~y~~~d~~~~~ 178 (194)
T cd00094 167 ---DQYWRFDPRSKE 178 (194)
T ss_pred ---CEEEEEeCccce
Confidence 478999988776
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.70 E-value=14 Score=34.25 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=43.4
Q ss_pred ceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCe--EeecccCCCCCCC-CceeeEEEEC-CEEEEEcCcccCC
Q psy1098 197 ESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT--WQKPQILGPQPLP-RSLHTACVIG-DRMFIFGGWVPIL 272 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~--W~~~~~~~~~p~~-r~~~~~~~~~-~~i~i~GG~~~~~ 272 (390)
.-|.+...|+ +..+|+..- ..+.|++|+..... .+..... ..|.. --.|.+..-+ ..+|+....
T Consensus 145 h~H~v~~~pd---g~~v~v~dl----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---- 212 (345)
T PF10282_consen 145 HPHQVVFSPD---GRFVYVPDL----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---- 212 (345)
T ss_dssp CEEEEEE-TT---SSEEEEEET----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT----
T ss_pred cceeEEECCC---CCEEEEEec----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC----
Confidence 3466666653 456666531 12678888887655 5442211 12222 1223333223 578898764
Q ss_pred CccccccccccceecCceEEeecC--CCeeeeccc
Q psy1098 273 KDESRSLHEKEWKCSNQLACLHLP--EMTWEDLSV 305 (390)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~v~~ 305 (390)
.+.+..|+.. +..++.+..
T Consensus 213 --------------s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 213 --------------SNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp --------------TTEEEEEEEETTTTEEEEEEE
T ss_pred --------------CCcEEEEeecccCCceeEEEE
Confidence 4566666665 667766654
No 76
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=90.55 E-value=11 Score=32.84 Aligned_cols=289 Identities=13% Similarity=0.161 Sum_probs=110.4
Q ss_pred eEEeCCEEEE--EccCCCCcc--cceEEEEC-CCCcEEeeeecCCC----CC-CCceeeEEEeCCEEEEEcceeC-Ccee
Q psy1098 33 AVAIKDLMLV--FGGGNEGIV--EELHVFNT-ATNQWFIPTLKGDI----PP-GCAAYGIVVDNTRVLIFGGMVE-YGKY 101 (390)
Q Consensus 33 ~~~~~~~iyv--~GG~~~~~~--~~~~~~d~-~~~~W~~~~~~~~~----p~-~r~~~~~~~~~~~iyv~GG~~~-~~~~ 101 (390)
+.+.++.||. .+|..++.. .-.|+=.- ..++|+..+--.++ |. ....+++-+++++||..=-... .+..
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~k 100 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNK 100 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhh
Confidence 4566777663 345444322 22333333 35678654432122 11 1223455688999987643321 1111
Q ss_pred ecceEEEE---cCcceeEEe--cCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecC
Q psy1098 102 SSDLYELQ---ASKWEWKRL--KPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELK 176 (390)
Q Consensus 102 ~~~v~~~d---~~~~~W~~~--~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (390)
......++ .....|+.- ...+...........-|+.+.+++.-|.+|=-+++..+ +-..-++.-+..
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sP--------Re~G~~yfs~~~ 172 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSP--------RELGFLYFSDAF 172 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS---------EEEEEEETTTT
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCc--------ceeeEEEecccc
Confidence 22222232 466678653 33221111222355678888888877788654443211 222222222222
Q ss_pred CCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEc-CCCCCc-cCcEEEEecCCCeEeecccCCCCCCCCceee
Q psy1098 177 SGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYG-GMSGNR-LSDLFMLDINSMTWQKPQILGPQPLPRSLHT 254 (390)
Q Consensus 177 ~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~G-G~~~~~-~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~ 254 (390)
......-.+. ........-+..+.-.+ ++++|+.- |..... -+.+.+-+.....|+.+... -..-....-
T Consensus 173 ~sp~~~vrr~-i~sey~~~AsEPCvkyY-----~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlP 244 (367)
T PF12217_consen 173 ASPGVFVRRI-IPSEYERNASEPCVKYY-----DGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLP 244 (367)
T ss_dssp T-TT--EEEE---GGG-TTEEEEEEEEE-----TTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---
T ss_pred cCCcceeeee-chhhhccccccchhhhh-----CCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCC
Confidence 1111111111 01112222233444455 88999875 333322 24577777788889987542 122234455
Q ss_pred EEEECCEEEEEcCcccCC--Cccccc----ccccc-ceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeee-CC
Q psy1098 255 ACVIGDRMFIFGGWVPIL--KDESRS----LHEKE-WKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI-NS 326 (390)
Q Consensus 255 ~~~~~~~i~i~GG~~~~~--~~~~~~----~~~~~-~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~-~~ 326 (390)
.+.+++.|||||-..... ..+... .+... +-+.-.+--+.++.-+|..+...--.+..-..-.|-+++++ ++
T Consensus 245 FakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~ 324 (367)
T PF12217_consen 245 FAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDG 324 (367)
T ss_dssp EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETT
T ss_pred ceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECC
Confidence 677899999998543322 111110 01000 00000111124556677777654222223334445555555 55
Q ss_pred EE-EEEeccCCc
Q psy1098 327 RM-YIWSGRDDY 337 (390)
Q Consensus 327 ~l-~v~GG~~~~ 337 (390)
-| |||||.+..
T Consensus 325 ~lyy~FGgED~~ 336 (367)
T PF12217_consen 325 WLYYIFGGEDFF 336 (367)
T ss_dssp EEEEEEEEB-S-
T ss_pred EEEEEecCcccC
Confidence 54 688987643
No 77
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.32 E-value=17 Score=34.51 Aligned_cols=92 Identities=11% Similarity=0.119 Sum_probs=45.5
Q ss_pred eeEEecCCCCCCCCCCC-ceeeeEEeCCEEEEEccCCCCcccceEEEEC-CCCcEEeeeecCCCCCCCceeeEEEe-CCE
Q psy1098 12 YRWRRIDDPAGPQPRPR-HGHRAVAIKDLMLVFGGGNEGIVEELHVFNT-ATNQWFIPTLKGDIPPGCAAYGIVVD-NTR 88 (390)
Q Consensus 12 ~~W~~~~~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~-~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~ 88 (390)
.+|.+...+....+..+ ...++...++..|++|-.. +..... .-.+|+.+.....+|... ..+... ++.
T Consensus 120 ~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G------~il~T~DgG~tW~~~~~~~~~p~~~--~~i~~~~~~~ 191 (398)
T PLN00033 120 KTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA------ILLHTSDGGETWERIPLSPKLPGEP--VLIKATGPKS 191 (398)
T ss_pred CCceECccCcccccccccceeeeEEECCEEEEEcCce------EEEEEcCCCCCceECccccCCCCCc--eEEEEECCCc
Confidence 47888642111111121 2334444577788875411 222222 357798876432333322 223333 445
Q ss_pred EEEEcceeCCceeecceEEEEcCcceeEEe
Q psy1098 89 VLIFGGMVEYGKYSSDLYELQASKWEWKRL 118 (390)
Q Consensus 89 iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~ 118 (390)
+++.|.. ..+++-+-...+|+.+
T Consensus 192 ~~ivg~~-------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 192 AEMVTDE-------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred eEEEecc-------ceEEEECCCCCCceEc
Confidence 7777743 1255555556689876
No 78
>PRK13684 Ycf48-like protein; Provisional
Probab=90.25 E-value=15 Score=33.91 Aligned_cols=198 Identities=9% Similarity=0.132 Sum_probs=92.4
Q ss_pred CCCcEEeeeecCCCCCCCceeeEEEeC-CEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEE
Q psy1098 60 ATNQWFIPTLKGDIPPGCAAYGIVVDN-TRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFT 138 (390)
Q Consensus 60 ~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~ 138 (390)
....|++.. .|.......+...+ ++.|++|-. -.++.=.-.-.+|++.... .+........+
T Consensus 33 ~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~-------G~il~T~DgG~tW~~~~~~------~~~~~~~l~~v 95 (334)
T PRK13684 33 SSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN-------RTLLETNDGGETWEERSLD------LPEENFRLISI 95 (334)
T ss_pred cCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC-------CEEEEEcCCCCCceECccC------Ccccccceeee
Confidence 356798876 33344444554444 466776632 1244443345689886532 11112212222
Q ss_pred E-ECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEc
Q psy1098 139 L-IGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYG 217 (390)
Q Consensus 139 ~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~G 217 (390)
. .++..++.|.. .. ++ ...+ ...+|+.+......|... ...... +.+.+++.|
T Consensus 96 ~~~~~~~~~~G~~-g~----------------i~--~S~D-gG~tW~~~~~~~~~~~~~--~~i~~~----~~~~~~~~g 149 (334)
T PRK13684 96 SFKGDEGWIVGQP-SL----------------LL--HTTD-GGKNWTRIPLSEKLPGSP--YLITAL----GPGTAEMAT 149 (334)
T ss_pred EEcCCcEEEeCCC-ce----------------EE--EECC-CCCCCeEccCCcCCCCCc--eEEEEE----CCCcceeee
Confidence 2 24456665432 11 22 2221 125899864321222221 223333 145566665
Q ss_pred CCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEe-ecC
Q psy1098 218 GMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACL-HLP 296 (390)
Q Consensus 218 G~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~ 296 (390)
.. ..+++=+-.-.+|+.+.. +..-..+.+....+..++.-|. ...++.- |..
T Consensus 150 ~~-----G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~------------------~G~i~~s~~~g 202 (334)
T PRK13684 150 NV-----GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS------------------RGNFYSTWEPG 202 (334)
T ss_pred cc-----ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC------------------CceEEEEcCCC
Confidence 43 345555556789998542 1122334444444444444332 1233332 344
Q ss_pred CCeeeecccccccCCCCCCCCCcceeee-CCEEEEEecc
Q psy1098 297 EMTWEDLSVEVTDDFLPKPRAGHCASVI-NSRMYIWSGR 334 (390)
Q Consensus 297 ~~~W~~v~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~ 334 (390)
..+|+.+.. +..+.-++++.. +++++++|..
T Consensus 203 g~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 203 QTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred CCeEEEeeC-------CCcccceeeeEcCCCCEEEEecC
Confidence 567998864 233333333333 5677777653
No 79
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.85 E-value=15 Score=33.30 Aligned_cols=263 Identities=14% Similarity=0.180 Sum_probs=108.3
Q ss_pred CceeEEecCCCCCCCCCCCceeeeEEeC-CEEEEEccCCCCcccceEEEEC-CCCcEEeeeecCCCCCCCceeeEEEeCC
Q psy1098 10 PVYRWRRIDDPAGPQPRPRHGHRAVAIK-DLMLVFGGGNEGIVEELHVFNT-ATNQWFIPTLKGDIPPGCAAYGIVVDNT 87 (390)
Q Consensus 10 ~~~~W~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~d~-~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 87 (390)
....|+.+. +|.......+..++ +.-|++|-. ....--. --.+|+........+......++...++
T Consensus 4 ~~~~W~~v~-----l~t~~~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~ 72 (302)
T PF14870_consen 4 SGNSWQQVS-----LPTDKPLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN 72 (302)
T ss_dssp SS--EEEEE------S-SS-EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----S-----EEEEEEEETT
T ss_pred cCCCcEEee-----cCCCCceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCCCccceeeEEEEEecCC
Confidence 356899995 45444555555554 568888752 1222222 3456988764322221223344555678
Q ss_pred EEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEE-CCEEEEEcCccCCCCCCCCCCCcccc
Q psy1098 88 RVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI-GNKVYLFGGLANSGGDETKPTPSYKY 166 (390)
Q Consensus 88 ~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~ 166 (390)
..|+.|-. + -++.-.-.-.+|++++... +.+-..+.+..+ ++.++++|....
T Consensus 73 ~g~ivG~~---g----~ll~T~DgG~tW~~v~l~~------~lpgs~~~i~~l~~~~~~l~~~~G~-------------- 125 (302)
T PF14870_consen 73 EGWIVGEP---G----LLLHTTDGGKTWERVPLSS------KLPGSPFGITALGDGSAELAGDRGA-------------- 125 (302)
T ss_dssp EEEEEEET---T----EEEEESSTTSS-EE----T------T-SS-EEEEEEEETTEEEEEETT----------------
T ss_pred ceEEEcCC---c----eEEEecCCCCCcEEeecCC------CCCCCeeEEEEcCCCcEEEEcCCCc--------------
Confidence 88887632 1 2444444566899986321 123333444444 467777654321
Q ss_pred ccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCC
Q psy1098 167 LDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQ 246 (390)
Q Consensus 167 ~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~ 246 (390)
+++=.-. ..+|+.+..... . .-...... .++++++++.. + +-+...|+....|+... .
T Consensus 126 ---iy~T~Dg---G~tW~~~~~~~~---g-s~~~~~r~----~dG~~vavs~~-G---~~~~s~~~G~~~w~~~~----r 183 (302)
T PF14870_consen 126 ---IYRTTDG---GKTWQAVVSETS---G-SINDITRS----SDGRYVAVSSR-G---NFYSSWDPGQTTWQPHN----R 183 (302)
T ss_dssp ---EEEESST---TSSEEEEE-S--------EEEEEE-----TTS-EEEEETT-S---SEEEEE-TT-SS-EEEE-----
T ss_pred ---EEEeCCC---CCCeeEcccCCc---c-eeEeEEEC----CCCcEEEEECc-c---cEEEEecCCCccceEEc----c
Confidence 3322211 258988543111 1 11122222 26776666643 2 22335677777898742 3
Q ss_pred CCCCceeeEEEE-CCEEEEEcCcccCCCccccccccccceecCceEEee--cCCCeeeecccccccCCCCCCCCCc--ce
Q psy1098 247 PLPRSLHTACVI-GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLH--LPEMTWEDLSVEVTDDFLPKPRAGH--CA 321 (390)
Q Consensus 247 p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~W~~v~~~~~~~~~p~~r~~~--~~ 321 (390)
+..|.-.++... ++.++++. .. ..+.+=+ -...+|.+.. .|....++ --
T Consensus 184 ~~~~riq~~gf~~~~~lw~~~-~G------------------g~~~~s~~~~~~~~w~~~~-------~~~~~~~~~~ld 237 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGNLWMLA-RG------------------GQIQFSDDPDDGETWSEPI-------IPIKTNGYGILD 237 (302)
T ss_dssp -SSS-EEEEEE-TTS-EEEEE-TT------------------TEEEEEE-TTEEEEE---B--------TTSS--S-EEE
T ss_pred CccceehhceecCCCCEEEEe-CC------------------cEEEEccCCCCcccccccc-------CCcccCceeeEE
Confidence 344444444444 56777764 11 1222222 2455788743 33333333 22
Q ss_pred eee--CCEEEEEeccCCccccccceeeeCeeEEEEecCCCCCC
Q psy1098 322 SVI--NSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVEKPGPPG 362 (390)
Q Consensus 322 ~~~--~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~~~~~~~ 362 (390)
+.. ++.+++.||....-.+.+ --+.|+-+......+.
T Consensus 238 ~a~~~~~~~wa~gg~G~l~~S~D----gGktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 238 LAYRPPNEIWAVGGSGTLLVSTD----GGKTWQKDRVGENVPS 276 (302)
T ss_dssp EEESSSS-EEEEESTT-EEEESS----TTSS-EE-GGGTTSSS
T ss_pred EEecCCCCEEEEeCCccEEEeCC----CCccceECccccCCCC
Confidence 222 588999999864322211 1567887755443443
No 80
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.11 E-value=24 Score=34.57 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=64.4
Q ss_pred eeeeEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCC-CC-CceeeEEEeC-CEEEEEcceeCCceeecc
Q psy1098 30 GHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIP-PG-CAAYGIVVDN-TRVLIFGGMVEYGKYSSD 104 (390)
Q Consensus 30 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p-~~-r~~~~~~~~~-~~iyv~GG~~~~~~~~~~ 104 (390)
..+-++.++.+|+.... ..++.+|..+.+ |+.-......+ .+ .....++..+ ++||+... ...
T Consensus 54 ~~sPvv~~g~vy~~~~~-----g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~ 121 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH-----SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGR 121 (488)
T ss_pred ccCCEEECCEEEEeCCC-----CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCe
Confidence 33456778888886652 468889987655 76533111000 00 0111223445 67776432 135
Q ss_pred eEEEEcCcc--eeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceee
Q psy1098 105 LYELQASKW--EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTV 182 (390)
Q Consensus 105 v~~~d~~~~--~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 182 (390)
++.+|..+. .|+.-..... ........+.+..++.+|+ |........ -.....++.+|..+.+ ..
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~----~~~~~i~ssP~v~~~~v~v-g~~~~~~~~-------~~~~g~v~alD~~TG~-~~ 188 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQV----PPGYTMTGAPTIVKKLVII-GSSGAEFFA-------CGVRGALRAYDVETGK-LL 188 (488)
T ss_pred EEEEECCCCCEeeeecCCCCc----CcceEecCCCEEECCEEEE-ecccccccc-------CCCCcEEEEEECCCCc-ee
Confidence 888988754 5875432100 0000012233444555554 432211000 0123468889998764 56
Q ss_pred eec
Q psy1098 183 WDM 185 (390)
Q Consensus 183 W~~ 185 (390)
|+.
T Consensus 189 W~~ 191 (488)
T cd00216 189 WRF 191 (488)
T ss_pred eEe
Confidence 875
No 81
>KOG0649|consensus
Probab=88.89 E-value=15 Score=31.84 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=71.4
Q ss_pred EEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEEC--CEEEEEcCccCCCCCCCCC
Q psy1098 83 VVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIG--NKVYLFGGLANSGGDETKP 160 (390)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~~~~ 160 (390)
..-.++|++.||. ..+|..|.++.+.++.-.. +.-+-|+++.-+ +.|+ -|+-++.
T Consensus 123 dP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rG--------HtDYvH~vv~R~~~~qil-sG~EDGt------- 179 (325)
T KOG0649|consen 123 DPSENSILFAGGD-------GVIYQVDLEDGRIQREYRG--------HTDYVHSVVGRNANGQIL-SGAEDGT------- 179 (325)
T ss_pred ccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcC--------CcceeeeeeecccCccee-ecCCCcc-------
Confidence 3457889999986 3478899999988765431 445666666543 3333 4554432
Q ss_pred CCccccccceeeeecCCCceeeeeccccCC--CCCCCCcee--eeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCe
Q psy1098 161 TPSYKYLDDFYTLELKSGHTTVWDMPGTYG--GLPSPRESH--TACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 161 ~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~--~~p~~r~~~--~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~ 236 (390)
+-.+|..+.+ .-+.+.+.. ++..|..+. .+... +..-+|.||- ..+-.+++...+
T Consensus 180 ---------vRvWd~kt~k--~v~~ie~yk~~~~lRp~~g~wigala~-----~edWlvCGgG-----p~lslwhLrsse 238 (325)
T KOG0649|consen 180 ---------VRVWDTKTQK--HVSMIEPYKNPNLLRPDWGKWIGALAV-----NEDWLVCGGG-----PKLSLWHLRSSE 238 (325)
T ss_pred ---------EEEEeccccc--eeEEeccccChhhcCcccCceeEEEec-----cCceEEecCC-----CceeEEeccCCC
Confidence 4455666532 223322211 222221222 33343 5666777765 345556665554
Q ss_pred EeecccCCCCCCCCceeeEEEECCEEEEEc
Q psy1098 237 WQKPQILGPQPLPRSLHTACVIGDRMFIFG 266 (390)
Q Consensus 237 W~~~~~~~~~p~~r~~~~~~~~~~~i~i~G 266 (390)
-+. ..|.|-.-+-+...++.+++.|
T Consensus 239 ~t~-----vfpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 239 STC-----VFPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ceE-----EEecccceeEeeeecceEEEec
Confidence 444 2334433444555566666665
No 82
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.75 E-value=16 Score=32.13 Aligned_cols=161 Identities=16% Similarity=0.211 Sum_probs=89.7
Q ss_pred CCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCC---CCCCceeeeEEee
Q psy1098 129 PCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGL---PSPRESHTACSWT 205 (390)
Q Consensus 129 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~---p~~r~~~~~~~~~ 205 (390)
|.+-.+...++.++.+|.--. ..+.+.+||+.+.....+..++..+.. |-...+++-+-+
T Consensus 66 p~~~~GtG~vVYngslYY~~~----------------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~- 128 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY----------------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDF- 128 (250)
T ss_pred eceeccCCeEEECCcEEEEec----------------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEE-
Confidence 455566666777887776422 234699999998655546665433222 111111111111
Q ss_pred ccCCCcEEEEEcCCCCCc-cCcEEEEecCCC----eEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccc
Q psy1098 206 DEYKNTKLIIYGGMSGNR-LSDLFMLDINSM----TWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLH 280 (390)
Q Consensus 206 ~~~~~~~i~v~GG~~~~~-~~~v~~~d~~~~----~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~ 280 (390)
+.+++-|+|+-...... .-.|-++|+.+. +|.. ..+. +....+.++-|.+|++-..+...
T Consensus 129 -AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~k-~~~~naFmvCGvLY~~~s~~~~~-------- 193 (250)
T PF02191_consen 129 -AVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYPK-RSAGNAFMVCGVLYATDSYDTRD-------- 193 (250)
T ss_pred -EEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccCc-hhhcceeeEeeEEEEEEECCCCC--------
Confidence 11255677775443221 223456677654 3554 2332 33345667788899986553221
Q ss_pred cccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeee---CCEEEEEe
Q psy1098 281 EKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI---NSRMYIWS 332 (390)
Q Consensus 281 ~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~---~~~l~v~G 332 (390)
..-.+.||+.+++=..+..+ ++.+...++++.. +++||++-
T Consensus 194 ------~~I~yafDt~t~~~~~~~i~-----f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 194 ------TEIFYAFDTYTGKEEDVSIP-----FPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred ------cEEEEEEECCCCceeceeee-----eccccCceEeeeECCCCCeEEEEE
Confidence 23457899988776655542 5555557777777 57899874
No 83
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.47 E-value=3.8 Score=36.03 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQ 289 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
++.+|..-|.-+. +.+.++|+++++-.. ...+|..-++=+++.++++||.+-=. ...
T Consensus 55 ~g~LyESTG~yG~--S~l~~~d~~tg~~~~---~~~l~~~~FgEGit~~~d~l~qLTWk------------------~~~ 111 (264)
T PF05096_consen 55 DGTLYESTGLYGQ--SSLRKVDLETGKVLQ---SVPLPPRYFGEGITILGDKLYQLTWK------------------EGT 111 (264)
T ss_dssp TTEEEEEECSTTE--EEEEEEETTTSSEEE---EEE-TTT--EEEEEEETTEEEEEESS------------------SSE
T ss_pred CCEEEEeCCCCCc--EEEEEEECCCCcEEE---EEECCccccceeEEEECCEEEEEEec------------------CCe
Confidence 7888888887554 678899999987665 34667677888999999999998543 567
Q ss_pred eEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccC
Q psy1098 290 LACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRD 335 (390)
Q Consensus 290 ~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 335 (390)
+++||+.+. +++.. ++-+..|-+.+.-++.|++-=|.+
T Consensus 112 ~f~yd~~tl--~~~~~------~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 112 GFVYDPNTL--KKIGT------FPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp EEEEETTTT--EEEEE------EE-SSS--EEEECSSCEEEE-SSS
T ss_pred EEEEccccc--eEEEE------EecCCcceEEEcCCCEEEEECCcc
Confidence 899998764 45555 555567788887788888888864
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=88.36 E-value=17 Score=32.09 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=33.1
Q ss_pred EEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeE
Q psy1098 39 LMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWK 116 (390)
Q Consensus 39 ~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~ 116 (390)
.+|+.++.+ ..+..+|+.+++-....... ..++ ..+....+..+|+.++.. +.+..||..+.+..
T Consensus 2 ~~~~s~~~d----~~v~~~d~~t~~~~~~~~~~--~~~~-~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEKD----NTISVIDTATLEVTRTFPVG--QRPR-GITLSKDGKLLYVCASDS------DTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecCC----CEEEEEECCCCceEEEEECC--CCCC-ceEECCCCCEEEEEECCC------CeEEEEECCCCcEE
Confidence 356665533 36888898776643322111 1111 111112234567766532 34778888876544
No 85
>KOG0649|consensus
Probab=86.01 E-value=22 Score=30.79 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=75.8
Q ss_pred cceeEEecCCCCCCCCCCCCCccceEEE-ECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCC
Q psy1098 112 KWEWKRLKPKPPRFGSPPCPRLGHSFTL-IGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYG 190 (390)
Q Consensus 112 ~~~W~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~ 190 (390)
...|+...|+.. +..+.|-.+.-... -.+.++..||-.. +|..|+.++ +.++.-
T Consensus 98 K~lwe~~~P~~~--~~~evPeINam~ldP~enSi~~AgGD~~-----------------~y~~dlE~G---~i~r~~--- 152 (325)
T KOG0649|consen 98 KRLWEVKIPMQV--DAVEVPEINAMWLDPSENSILFAGGDGV-----------------IYQVDLEDG---RIQREY--- 152 (325)
T ss_pred hhhhhhcCcccc--CcccCCccceeEeccCCCcEEEecCCeE-----------------EEEEEecCC---EEEEEE---
Confidence 345887777642 33455555544333 3578888887432 678888874 333310
Q ss_pred CCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeeccc---CCCCCCCCcee--eEEEECCEEEEE
Q psy1098 191 GLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQI---LGPQPLPRSLH--TACVIGDRMFIF 265 (390)
Q Consensus 191 ~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~---~~~~p~~r~~~--~~~~~~~~i~i~ 265 (390)
.-..-|-|+++.-+ .+-=++.|+.+| .+-++|.++.+=.++-. ..+...|..+. ++...+..-++.
T Consensus 153 -rGHtDYvH~vv~R~----~~~qilsG~EDG----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC 223 (325)
T KOG0649|consen 153 -RGHTDYVHSVVGRN----ANGQILSGAEDG----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC 223 (325)
T ss_pred -cCCcceeeeeeecc----cCcceeecCCCc----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe
Confidence 11223557766642 222345666654 46678888776554321 11222222333 566667777777
Q ss_pred cCcccCCCccccccccccceecCceEEeecCCCeeeec
Q psy1098 266 GGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDL 303 (390)
Q Consensus 266 GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v 303 (390)
||- ..+-++++.+-+=+.+
T Consensus 224 GgG-------------------p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 224 GGG-------------------PKLSLWHLRSSESTCV 242 (325)
T ss_pred cCC-------------------CceeEEeccCCCceEE
Confidence 762 4566677776665554
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.89 E-value=38 Score=33.49 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=63.8
Q ss_pred eeeEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecC-CC-C---CCCceeeEEEeCCEEEEEcceeCCceeec
Q psy1098 31 HRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKG-DI-P---PGCAAYGIVVDNTRVLIFGGMVEYGKYSS 103 (390)
Q Consensus 31 ~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~-~~-p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 103 (390)
.+-++.++.||+.... ..++.+|..+++ |+.-.... .. + ........+..+++||+... ..
T Consensus 63 stPvv~~g~vyv~s~~-----g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-----SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DA 130 (527)
T ss_pred cCCEEECCEEEEECCC-----CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CC
Confidence 3445678888886542 358889987655 76432110 00 0 00111223556677776322 13
Q ss_pred ceEEEEcCcc--eeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCcee
Q psy1098 104 DLYELQASKW--EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTT 181 (390)
Q Consensus 104 ~v~~~d~~~~--~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 181 (390)
.++++|..+. .|+.-.... ........+-+..++.+|+-...... .....++.||..+.. .
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~-----~~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD~~TG~-~ 193 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDY-----KAGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYDAKTGK-L 193 (527)
T ss_pred EEEEEECCCCCEEeecccccc-----cccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEECCCCc-e
Confidence 4889998766 476432110 00011122334457777663221110 223457888887764 4
Q ss_pred eeec
Q psy1098 182 VWDM 185 (390)
Q Consensus 182 ~W~~ 185 (390)
.|+.
T Consensus 194 lW~~ 197 (527)
T TIGR03075 194 VWRR 197 (527)
T ss_pred eEec
Confidence 5775
No 87
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.83 E-value=13 Score=28.79 Aligned_cols=84 Identities=10% Similarity=-0.005 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQ 289 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
+|.+|-..-........|..||+.+.+|+.+...............+.++|+|-++.-..... ...-+
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~------------~~~~~ 72 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE------------PDSID 72 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC------------cceEE
Confidence 666665554423335679999999999998653212334456677788899988875432111 01347
Q ss_pred eEEee-cCCCeeeeccc
Q psy1098 290 LACLH-LPEMTWEDLSV 305 (390)
Q Consensus 290 ~~~~d-~~~~~W~~v~~ 305 (390)
+|+++ -++.+|.+...
T Consensus 73 iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEeeccccceEEEEEE
Confidence 88885 45678997654
No 88
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.30 E-value=26 Score=31.03 Aligned_cols=189 Identities=11% Similarity=0.041 Sum_probs=94.8
Q ss_pred ceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCC
Q psy1098 53 ELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPR 132 (390)
Q Consensus 53 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r 132 (390)
.+-++|+++.+-++.+...+++..-....+.-..++|+..|-..-.+ ++|+.++.-+....-. ..-
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfpaPq-------G~g 190 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFPAPQ-------GGG 190 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce-------ecCcccCceeeeccCC-------CCC
Confidence 67888988888777763322222111111111234666665422111 5677777655443210 111
Q ss_pred ccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCC-ceeeeEEeeccCCCc
Q psy1098 133 LGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPR-ESHTACSWTDEYKNT 211 (390)
Q Consensus 133 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r-~~~~~~~~~~~~~~~ 211 (390)
.+.-|+.-++.+++..=... -+-++|..+...+... .|.+. .+.--+.. ...+
T Consensus 191 pyGi~atpdGsvwyaslagn----------------aiaridp~~~~aev~p-------~P~~~~~gsRriws---dpig 244 (353)
T COG4257 191 PYGICATPDGSVWYASLAGN----------------AIARIDPFAGHAEVVP-------QPNALKAGSRRIWS---DPIG 244 (353)
T ss_pred CcceEECCCCcEEEEecccc----------------ceEEcccccCCcceec-------CCCccccccccccc---CccC
Confidence 22234445777776522111 1445565543211111 12221 11111111 0156
Q ss_pred EEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceE
Q psy1098 212 KLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLA 291 (390)
Q Consensus 212 ~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~ 291 (390)
++++.-- ....+++||+.+.+|.+-...+ ..+|.+..-+--.+++++.-=- .+.+.
T Consensus 245 ~~wittw----g~g~l~rfdPs~~sW~eypLPg--s~arpys~rVD~~grVW~sea~------------------agai~ 300 (353)
T COG4257 245 RAWITTW----GTGSLHRFDPSVTSWIEYPLPG--SKARPYSMRVDRHGRVWLSEAD------------------AGAIG 300 (353)
T ss_pred cEEEecc----CCceeeEeCcccccceeeeCCC--CCCCcceeeeccCCcEEeeccc------------------cCcee
Confidence 6776621 1246899999999999843211 2234433333334677764211 57899
Q ss_pred EeecCCCeeeeccc
Q psy1098 292 CLHLPEMTWEDLSV 305 (390)
Q Consensus 292 ~~d~~~~~W~~v~~ 305 (390)
+||+++.+++.++.
T Consensus 301 rfdpeta~ftv~p~ 314 (353)
T COG4257 301 RFDPETARFTVLPI 314 (353)
T ss_pred ecCcccceEEEecC
Confidence 99999999998764
No 89
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=84.48 E-value=25 Score=30.15 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=14.7
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeE
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTW 237 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W 237 (390)
+++.+++++.+ ..+.+||+.+.+-
T Consensus 188 ~~~~l~~~~~~----~~i~i~d~~~~~~ 211 (289)
T cd00200 188 DGEKLLSSSSD----GTIKLWDLSTGKC 211 (289)
T ss_pred CcCEEEEecCC----CcEEEEECCCCce
Confidence 44455555543 4688898876443
No 90
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.27 E-value=42 Score=31.82 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=66.4
Q ss_pred CCcEEeeeecCCCCCCCceeeEEE---eCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCc-cce
Q psy1098 61 TNQWFIPTLKGDIPPGCAAYGIVV---DNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRL-GHS 136 (390)
Q Consensus 61 ~~~W~~~~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~-~~~ 136 (390)
..+|+++..+- ...+....+.. ..++-+++|-. --|..-+-.-++|++... +.. ..+...+ ...
T Consensus 74 G~~W~q~~~p~--~~~~~L~~V~F~~~d~~~GwAVG~~-------G~IL~T~DGG~tW~~~~~-~~~--~~~~~~~~l~~ 141 (398)
T PLN00033 74 SSEWEQVDLPI--DPGVVLLDIAFVPDDPTHGFLLGTR-------QTLLETKDGGKTWVPRSI-PSA--EDEDFNYRFNS 141 (398)
T ss_pred CCccEEeecCC--CCCCceEEEEeccCCCCEEEEEcCC-------CEEEEEcCCCCCceECcc-Ccc--cccccccceee
Confidence 45799987321 12234455554 34578888753 124444445668987542 100 0011111 223
Q ss_pred EEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEE
Q psy1098 137 FTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIY 216 (390)
Q Consensus 137 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~ 216 (390)
+...++.++++|-.. ..|...+ ..+.|+.+.....+|.... ..... +.+.++++
T Consensus 142 v~f~~~~g~~vG~~G-------------------~il~T~D-gG~tW~~~~~~~~~p~~~~--~i~~~----~~~~~~iv 195 (398)
T PLN00033 142 ISFKGKEGWIIGKPA-------------------ILLHTSD-GGETWERIPLSPKLPGEPV--LIKAT----GPKSAEMV 195 (398)
T ss_pred eEEECCEEEEEcCce-------------------EEEEEcC-CCCCceECccccCCCCCce--EEEEE----CCCceEEE
Confidence 333467788875321 1122221 1268998654333343322 22223 14567777
Q ss_pred cCCCCCccCcEEEEecCCCeEeec
Q psy1098 217 GGMSGNRLSDLFMLDINSMTWQKP 240 (390)
Q Consensus 217 GG~~~~~~~~v~~~d~~~~~W~~~ 240 (390)
|.. ..+++-+-...+|+.+
T Consensus 196 g~~-----G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 196 TDE-----GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ecc-----ceEEEECCCCCCceEc
Confidence 743 2355555566789985
No 91
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=82.80 E-value=45 Score=31.84 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=36.2
Q ss_pred CCCCCCCCCceeEEecCCCCCCCCCCCceeeeEEeCCEE----EEEccCCCCcccceEEEECCCCcEEeeeec
Q psy1098 2 DKLSDDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLM----LVFGGGNEGIVEELHVFNTATNQWFIPTLK 70 (390)
Q Consensus 2 ~~~~~~~~~~~~W~~~~~~~~~~p~~r~~~~~~~~~~~i----yv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 70 (390)
|+||.++....+=++|+..-+....+|.... +.+| +++|. .....+++.++.+.++-++++--
T Consensus 59 DdlWe~slk~g~~~ritS~lGVvnn~kf~pd----Grkvaf~rv~~~s--s~~taDly~v~~e~Ge~kRiTyf 125 (668)
T COG4946 59 DDLWEYSLKDGKPLRITSGLGVVNNPKFSPD----GRKVAFSRVMLGS--SLQTADLYVVPSEDGEAKRITYF 125 (668)
T ss_pred hHHHHhhhccCCeeEEecccceeccccCCCC----CcEEEEEEEEecC--CCccccEEEEeCCCCcEEEEEEe
Confidence 5677777776666666644444444544332 1111 12222 12346789999999998888743
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.65 E-value=32 Score=30.40 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=65.1
Q ss_pred ECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCC
Q psy1098 140 IGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGM 219 (390)
Q Consensus 140 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~ 219 (390)
.++.+|.--|..+. +.+.++|+.+.. -.. ...+|..-.+-.++.+ +++||.+-=.
T Consensus 54 ~~g~LyESTG~yG~--------------S~l~~~d~~tg~---~~~---~~~l~~~~FgEGit~~-----~d~l~qLTWk 108 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ--------------SSLRKVDLETGK---VLQ---SVPLPPRYFGEGITIL-----GDKLYQLTWK 108 (264)
T ss_dssp ETTEEEEEECSTTE--------------EEEEEEETTTSS---EEE---EEE-TTT--EEEEEEE-----TTEEEEEESS
T ss_pred CCCEEEEeCCCCCc--------------EEEEEEECCCCc---EEE---EEECCccccceeEEEE-----CCEEEEEEec
Confidence 46788887776543 247788888743 211 1135655566667777 8999998655
Q ss_pred CCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCe
Q psy1098 220 SGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT 299 (390)
Q Consensus 220 ~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 299 (390)
+ ...++||..+.+=.. ..+.+.-+-+.+.-+..+++--| ++.++.+||++.+
T Consensus 109 ~----~~~f~yd~~tl~~~~-----~~~y~~EGWGLt~dg~~Li~SDG-------------------S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 109 E----GTGFVYDPNTLKKIG-----TFPYPGEGWGLTSDGKRLIMSDG-------------------SSRLYFLDPETFK 160 (264)
T ss_dssp S----SEEEEEETTTTEEEE-----EEE-SSS--EEEECSSCEEEE-S-------------------SSEEEEE-TTT-S
T ss_pred C----CeEEEEccccceEEE-----EEecCCcceEEEcCCCEEEEECC-------------------ccceEEECCcccc
Confidence 4 568899998653222 22333455677767778888888 5788888887654
No 93
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.58 E-value=42 Score=32.07 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=40.1
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQ 289 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
+.+-.++|-.++ +.+.+||..+..-.++. .+..+-....+.-+++..+++-. .-+
T Consensus 370 ~~e~~vigt~dg---D~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNd------------------r~e 424 (668)
T COG4946 370 DPEGDVIGTNDG---DKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVVVAND------------------RFE 424 (668)
T ss_pred CCcceEEeccCC---ceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEEEEcC------------------ceE
Confidence 444677776665 56888998887766642 23333333333335565555432 346
Q ss_pred eEEeecCCCeeeecc
Q psy1098 290 LACLHLPEMTWEDLS 304 (390)
Q Consensus 290 ~~~~d~~~~~W~~v~ 304 (390)
+|.+|+++..-+.+.
T Consensus 425 l~vididngnv~~id 439 (668)
T COG4946 425 LWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEEecCCCeeEec
Confidence 677777666555443
No 94
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.26 E-value=47 Score=31.01 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=80.6
Q ss_pred EEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcC
Q psy1098 34 VAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQAS 111 (390)
Q Consensus 34 ~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~ 111 (390)
+..++++|+... ...++.+|+.+.+ |+..... -......-....+++||+-... . .+++||..
T Consensus 65 ~~~dg~v~~~~~-----~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~-g------~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGTR-----DGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWD-G------KLYALDAS 129 (370)
T ss_pred EeeCCeEEEecC-----CCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEeccc-c------eEEEEECC
Confidence 666888888722 1279999998887 8664421 0001111112225676663332 1 68999994
Q ss_pred --cceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccC
Q psy1098 112 --KWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTY 189 (390)
Q Consensus 112 --~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~ 189 (390)
+..|..-... . .+.....+..++.+|+.. . .+.++.++..+.. ..|..-...
T Consensus 130 ~G~~~W~~~~~~-------~-~~~~~~~v~~~~~v~~~s--~---------------~g~~~al~~~tG~-~~W~~~~~~ 183 (370)
T COG1520 130 TGTLVWSRNVGG-------S-PYYASPPVVGDGTVYVGT--D---------------DGHLYALNADTGT-LKWTYETPA 183 (370)
T ss_pred CCcEEEEEecCC-------C-eEEecCcEEcCcEEEEec--C---------------CCeEEEEEccCCc-EEEEEecCC
Confidence 4468775541 1 333334444456666543 1 1236777777553 578852221
Q ss_pred CCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCC--eEee
Q psy1098 190 GGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSM--TWQK 239 (390)
Q Consensus 190 ~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~--~W~~ 239 (390)
+ .+.... ...... .+.+|+-... . ...++.+|++++ .|+.
T Consensus 184 ~-~~~~~~-~~~~~~-----~~~vy~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 184 P-LSLSIY-GSPAIA-----SGTVYVGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred c-cccccc-cCceee-----cceEEEecCC--C-cceEEEEEccCCcEeeee
Confidence 1 222212 222222 5666655321 1 136889999755 4875
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=81.15 E-value=38 Score=29.85 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=33.0
Q ss_pred CEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcce
Q psy1098 38 DLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWE 114 (390)
Q Consensus 38 ~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~ 114 (390)
+.+|+.++. .+.+..||..+.+...... ....+ ...++...++.+|+.++.. ..+..+|+.+.+
T Consensus 43 ~~l~~~~~~----~~~v~~~d~~~~~~~~~~~--~~~~~-~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~ 106 (300)
T TIGR03866 43 KLLYVCASD----SDTIQVIDLATGEVIGTLP--SGPDP-ELFALHPNGKILYIANEDD------NLVTVIDIETRK 106 (300)
T ss_pred CEEEEEECC----CCeEEEEECCCCcEEEecc--CCCCc-cEEEECCCCCEEEEEcCCC------CeEEEEECCCCe
Confidence 346676653 2458889988776543211 11111 1122222344566665431 347888887653
No 96
>KOG0281|consensus
Probab=81.09 E-value=28 Score=31.77 Aligned_cols=83 Identities=6% Similarity=-0.035 Sum_probs=55.9
Q ss_pred CcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecc
Q psy1098 225 SDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304 (390)
Q Consensus 225 ~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~ 304 (390)
.++-.+++.+....+ .+..-+.+-+|..+.++++|.|.. -+.+-++|.+.+.--++-
T Consensus 340 RTikvW~~st~efvR-----tl~gHkRGIAClQYr~rlvVSGSS------------------DntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVR-----TLNGHKRGIACLQYRDRLVVSGSS------------------DNTIRLWDIECGACLRVL 396 (499)
T ss_pred ceEEEEeccceeeeh-----hhhcccccceehhccCeEEEecCC------------------CceEEEEeccccHHHHHH
Confidence 456777777776655 344456677888999999998875 357788888887644433
Q ss_pred cccccCCCCCCCCCcceeeeCCEEEEEeccCCcc
Q psy1098 305 VEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYK 338 (390)
Q Consensus 305 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 338 (390)
.. .. .---++.++++=+|-||++|.-
T Consensus 397 eG-----HE---eLvRciRFd~krIVSGaYDGki 422 (499)
T KOG0281|consen 397 EG-----HE---ELVRCIRFDNKRIVSGAYDGKI 422 (499)
T ss_pred hc-----hH---HhhhheeecCceeeeccccceE
Confidence 21 00 0124567788888999999763
No 97
>smart00284 OLF Olfactomedin-like domains.
Probab=81.02 E-value=38 Score=29.79 Aligned_cols=162 Identities=11% Similarity=0.073 Sum_probs=85.8
Q ss_pred CCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCC---CCCCCC---ceeee
Q psy1098 128 PPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYG---GLPSPR---ESHTA 201 (390)
Q Consensus 128 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~---~~p~~r---~~~~~ 201 (390)
+|.+-.+...++.++.+|.--.. .+.+.+||+.+.....+..++..+ ..|-.. ...-.
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~~----------------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDl 133 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKFN----------------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDL 133 (255)
T ss_pred CCCccccccEEEECceEEEEecC----------------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEE
Confidence 34666777778889999974322 235999999986544456543211 111111 11222
Q ss_pred EEeeccCCCcEEEEEcCCCCC-ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccc
Q psy1098 202 CSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLH 280 (390)
Q Consensus 202 ~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~ 280 (390)
++- ++-++++=....+ ..-.|-++|+.+.+-++.- ....+ .+....+.++-|.+|+.-......
T Consensus 134 AvD-----E~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW-~T~~~-k~sa~naFmvCGvLY~~~s~~~~~-------- 198 (255)
T smart00284 134 AVD-----ENGLWVIYATEQNAGKIVISKLNPATLTIENTW-ITTYN-KRSASNAFMICGILYVTRSLGSKG-------- 198 (255)
T ss_pred EEc-----CCceEEEEeccCCCCCEEEEeeCcccceEEEEE-EcCCC-cccccccEEEeeEEEEEccCCCCC--------
Confidence 222 5556666332221 1123456777665433211 01222 233346667788999985321110
Q ss_pred cccceecCceEEeecCCCeeeecccccccCCCCCCCCCcceeee---CCEEEEE
Q psy1098 281 EKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI---NSRMYIW 331 (390)
Q Consensus 281 ~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~---~~~l~v~ 331 (390)
..-.+.||..+.+=..+..+ ++.....++++.. +++||+.
T Consensus 199 ------~~I~yayDt~t~~~~~~~i~-----f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 199 ------EKVFYAYDTNTGKEGHLDIP-----FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred ------cEEEEEEECCCCccceeeee-----eccccccceeceeCCCCCeEEEE
Confidence 23467899887764443322 5555556677766 4778876
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=80.05 E-value=59 Score=31.39 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=73.0
Q ss_pred cceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceee
Q psy1098 103 SDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTV 182 (390)
Q Consensus 103 ~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 182 (390)
..+|.+|+.+.+-..+...+ ......+....+..|++....++ ..+++.+|+.+. +
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~-------g~~~~~~wSPDG~~La~~~~~~g--------------~~~Iy~~dl~tg---~ 297 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP-------GINGAPRFSPDGKKLALVLSKDG--------------QPEIYVVDIATK---A 297 (448)
T ss_pred cEEEEEECCCCCeEEecCCC-------CCcCCeeECCCCCEEEEEEeCCC--------------CeEEEEEECCCC---C
Confidence 46999999877655554321 11111111112345655432221 235888888763 3
Q ss_pred eeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEE
Q psy1098 183 WDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRM 262 (390)
Q Consensus 183 W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i 262 (390)
...+... .. ........++ +..|++.....+ ...+|++|+.+.+++++...+.. .......-+++.
T Consensus 298 ~~~lt~~---~~--~~~~p~wSpD---G~~I~f~s~~~g--~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~ 363 (448)
T PRK04792 298 LTRITRH---RA--IDTEPSWHPD---GKSLIFTSERGG--KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRS 363 (448)
T ss_pred eEECccC---CC--CccceEECCC---CCEEEEEECCCC--CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCE
Confidence 4443211 10 1111222221 344554433222 25799999998888876421111 111122234444
Q ss_pred EEEcCcccCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 263 FIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 263 ~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
+++.+.... ...++++|+.+...+.+..
T Consensus 364 l~~~~~~~g---------------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 364 MIMVNRTNG---------------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred EEEEEecCC---------------ceEEEEEECCCCCeEEccC
Confidence 444322110 3478899999888776653
No 99
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=79.85 E-value=38 Score=29.00 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=29.5
Q ss_pred CEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEE-eCCEEEEEcceeCCceeecceEEEEcCcc
Q psy1098 38 DLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVV-DNTRVLIFGGMVEYGKYSSDLYELQASKW 113 (390)
Q Consensus 38 ~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~~~~ 113 (390)
+.++++|+. ...+..||..+..-.... ....... ..+.. .+++.+++++.. ..+.+||..+.
T Consensus 21 ~~~l~~~~~----~g~i~i~~~~~~~~~~~~---~~~~~~i-~~~~~~~~~~~l~~~~~~------~~i~i~~~~~~ 83 (289)
T cd00200 21 GKLLATGSG----DGTIKVWDLETGELLRTL---KGHTGPV-RDVAASADGTYLASGSSD------KTIRLWDLETG 83 (289)
T ss_pred CCEEEEeec----CcEEEEEEeeCCCcEEEE---ecCCcce-eEEEECCCCCEEEEEcCC------CeEEEEEcCcc
Confidence 356666663 245777887665422211 0111111 12222 233455666542 34777887764
No 100
>PRK04922 tolB translocation protein TolB; Provisional
Probab=79.35 E-value=61 Score=31.09 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=72.9
Q ss_pred ccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCC
Q psy1098 51 VEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPC 130 (390)
Q Consensus 51 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~ 130 (390)
...++++|..+++-..+. ..+...........+++|++...... ..++|.+|+.+....++.... .
T Consensus 227 ~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~-------~ 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHF-------G 292 (433)
T ss_pred CcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCC-------C
Confidence 356889999888776655 22221112222233445655432211 247999999888766654321 0
Q ss_pred CCccceEEEECC-EEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCC
Q psy1098 131 PRLGHSFTLIGN-KVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYK 209 (390)
Q Consensus 131 ~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~ 209 (390)
..... ...-++ .|++.....+ ..++|.+++.+. +.+.+...+ .+.......++
T Consensus 293 ~~~~~-~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g---~~~~lt~~g-----~~~~~~~~SpD--- 346 (433)
T PRK04922 293 IDTEP-TWAPDGKSIYFTSDRGG--------------RPQIYRVAASGG---SAERLTFQG-----NYNARASVSPD--- 346 (433)
T ss_pred Cccce-EECCCCCEEEEEECCCC--------------CceEEEEECCCC---CeEEeecCC-----CCccCEEECCC---
Confidence 01111 112234 4544432221 125888887653 344432111 12222233332
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQ 241 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~ 241 (390)
+..|++..+..+ ...++++|+.+...+.+.
T Consensus 347 G~~Ia~~~~~~~--~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 347 GKKIAMVHGSGG--QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred CCEEEEEECCCC--ceeEEEEECCCCCeEECC
Confidence 445555443221 236899999888877653
No 101
>KOG0310|consensus
Probab=78.49 E-value=28 Score=33.08 Aligned_cols=110 Identities=10% Similarity=0.141 Sum_probs=59.3
Q ss_pred ECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCC
Q psy1098 140 IGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGM 219 (390)
Q Consensus 140 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~ 219 (390)
-+++++.+|+..+. +-.||..+ ..-...+. ....|.- ..-..+. ++.++++|+-
T Consensus 78 ~DG~LlaaGD~sG~----------------V~vfD~k~--r~iLR~~~-ah~apv~----~~~f~~~---d~t~l~s~sD 131 (487)
T KOG0310|consen 78 SDGRLLAAGDESGH----------------VKVFDMKS--RVILRQLY-AHQAPVH----VTKFSPQ---DNTMLVSGSD 131 (487)
T ss_pred cCCeEEEccCCcCc----------------EEEecccc--HHHHHHHh-hccCcee----EEEeccc---CCeEEEecCC
Confidence 37999999987764 67788443 01122211 1122222 1222222 7888888875
Q ss_pred CCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCe
Q psy1098 220 SGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT 299 (390)
Q Consensus 220 ~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 299 (390)
+ ..+-.+|+.+..- +....+..-.-|+ .++...++.|++-||++ ..+-.||..+.+
T Consensus 132 d----~v~k~~d~s~a~v-~~~l~~htDYVR~-g~~~~~~~hivvtGsYD------------------g~vrl~DtR~~~ 187 (487)
T KOG0310|consen 132 D----KVVKYWDLSTAYV-QAELSGHTDYVRC-GDISPANDHIVVTGSYD------------------GKVRLWDTRSLT 187 (487)
T ss_pred C----ceEEEEEcCCcEE-EEEecCCcceeEe-eccccCCCeEEEecCCC------------------ceEEEEEeccCC
Confidence 3 2234455555542 3222232222232 34445578899999984 466678877764
No 102
>KOG0286|consensus
Probab=77.75 E-value=52 Score=29.40 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE-CCEEEEEcCcccCCCccccccccccceecC
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI-GDRMFIFGGWVPILKDESRSLHEKEWKCSN 288 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 288 (390)
+.+.||.||.+. ...++|+....-.+--...+. ---+...+ ++.-|.-|-- -.
T Consensus 198 ~~ntFvSg~cD~----~aklWD~R~~~c~qtF~ghes----DINsv~ffP~G~afatGSD------------------D~ 251 (343)
T KOG0286|consen 198 DGNTFVSGGCDK----SAKLWDVRSGQCVQTFEGHES----DINSVRFFPSGDAFATGSD------------------DA 251 (343)
T ss_pred CCCeEEeccccc----ceeeeeccCcceeEeeccccc----ccceEEEccCCCeeeecCC------------------Cc
Confidence 788999999873 455667665533321100000 00122222 3444444431 23
Q ss_pred ceEEeecCCCeeeecccccccCCCCCCCCCcceeee--CCEEEEEeccCCc
Q psy1098 289 QLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI--NSRMYIWSGRDDY 337 (390)
Q Consensus 289 ~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 337 (390)
.+-.||++..+=-.+-. .+...++...+.+ .|+|++.|..+..
T Consensus 252 tcRlyDlRaD~~~a~ys------~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYS------HDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred eeEEEeecCCcEEeeec------cCcccCCceeEEEcccccEEEeeecCCc
Confidence 56678887765222211 2334455555554 7999999866543
No 103
>PTZ00421 coronin; Provisional
Probab=77.65 E-value=75 Score=31.19 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=13.8
Q ss_pred cEEEEEcCCCCCccCcEEEEecCCC
Q psy1098 211 TKLIIYGGMSGNRLSDLFMLDINSM 235 (390)
Q Consensus 211 ~~i~v~GG~~~~~~~~v~~~d~~~~ 235 (390)
+..++..|.+...-..+.+||+.+.
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCC
Confidence 3344555543333356888888653
No 104
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.86 E-value=43 Score=30.56 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=67.7
Q ss_pred cceeeeecCCCc--eeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCe-EeecccCC
Q psy1098 168 DDFYTLELKSGH--TTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT-WQKPQILG 244 (390)
Q Consensus 168 ~~~~~~d~~~~~--~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~-W~~~~~~~ 244 (390)
..++.|++.... ..++..+... ..+.+ -.+++.+ ++++++.-| +.+.+|++...+ +... +
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~--V~ai~~~-----~~~lv~~~g------~~l~v~~l~~~~~l~~~---~ 124 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGP--VTAICSF-----NGRLVVAVG------NKLYVYDLDNSKTLLKK---A 124 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS---EEEEEEE-----TTEEEEEET------TEEEEEEEETTSSEEEE---E
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCc--ceEhhhh-----CCEEEEeec------CEEEEEEccCcccchhh---h
Confidence 568888887621 1134332211 12222 2445555 777666666 578888888777 6663 3
Q ss_pred CCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecC--ceEEeecCCCeeeecccccccCCCCCCCCCccee
Q psy1098 245 PQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSN--QLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCAS 322 (390)
Q Consensus 245 ~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~ 322 (390)
....+-...++...++.|++ |-. .. .++.|+.+..+-..+.. -+.++.-.++.
T Consensus 125 ~~~~~~~i~sl~~~~~~I~v-gD~------------------~~sv~~~~~~~~~~~l~~va~------d~~~~~v~~~~ 179 (321)
T PF03178_consen 125 FYDSPFYITSLSVFKNYILV-GDA------------------MKSVSLLRYDEENNKLILVAR------DYQPRWVTAAE 179 (321)
T ss_dssp EE-BSSSEEEEEEETTEEEE-EES------------------SSSEEEEEEETTTE-EEEEEE------ESS-BEEEEEE
T ss_pred eecceEEEEEEeccccEEEE-EEc------------------ccCEEEEEEEccCCEEEEEEe------cCCCccEEEEE
Confidence 33333355566666775554 432 23 45566776677777776 34466656666
Q ss_pred ee-CCEEEEEecc
Q psy1098 323 VI-NSRMYIWSGR 334 (390)
Q Consensus 323 ~~-~~~l~v~GG~ 334 (390)
.+ ++. .++++.
T Consensus 180 ~l~d~~-~~i~~D 191 (321)
T PF03178_consen 180 FLVDED-TIIVGD 191 (321)
T ss_dssp EE-SSS-EEEEEE
T ss_pred EecCCc-EEEEEc
Confidence 66 555 455544
No 105
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=76.12 E-value=71 Score=30.18 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=72.2
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCC
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCP 131 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~ 131 (390)
..++++|..++.-..+. ..+......+....++.|++..... -..++|.+|..+....++.... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~-------~~ 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGP-------GI 279 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCC-------CC
Confidence 56888898877665554 2222222222223344566543321 1256899999887766654321 00
Q ss_pred CccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCc
Q psy1098 132 RLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNT 211 (390)
Q Consensus 132 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~ 211 (390)
.........+.+|++...... ...++.+++.+. ++..+.... .........+ ++
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~---~~~~l~~~~-----~~~~~~~~sp----dg 333 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGG---EVRRLTFRG-----GYNASPSWSP----DG 333 (417)
T ss_pred CCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCC---CEEEeecCC-----CCccCeEECC----CC
Confidence 011111112344554433221 225888887653 344432111 1112222222 45
Q ss_pred EEEEEcCCCCCccCcEEEEecCCCeEeecc
Q psy1098 212 KLIIYGGMSGNRLSDLFMLDINSMTWQKPQ 241 (390)
Q Consensus 212 ~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~ 241 (390)
+.+++....+ ....++.+|+.+..++.+.
T Consensus 334 ~~i~~~~~~~-~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 334 DLIAFVHREG-GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CEEEEEEccC-CceEEEEEeCCCCCeEEcc
Confidence 5555544332 2246899999887766643
No 106
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=75.59 E-value=74 Score=30.08 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEE-EECCEEEEEcCcccCCCccccccccccceecC
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTAC-VIGDRMFIFGGWVPILKDESRSLHEKEWKCSN 288 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 288 (390)
+.+|++.....+ ...+|.+|+.+..++.+.... ....... .-+++.+++...... ..
T Consensus 289 g~~l~~~s~~~g--~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~---------------~~ 346 (417)
T TIGR02800 289 GKSIAFTSDRGG--SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG---------------GF 346 (417)
T ss_pred CCEEEEEECCCC--CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCC---------------ce
Confidence 344554433322 247999999888877654221 1111222 225555555443210 34
Q ss_pred ceEEeecCCCeeeeccc
Q psy1098 289 QLACLHLPEMTWEDLSV 305 (390)
Q Consensus 289 ~~~~~d~~~~~W~~v~~ 305 (390)
.++++|+.+..++.+..
T Consensus 347 ~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 347 NIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEEeCCCCCeEEccC
Confidence 78999998877766653
No 107
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=73.44 E-value=80 Score=29.49 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=68.5
Q ss_pred CCCCCCCcee--EEecCCC-CCCCCCCCceeeeEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCCCCCc
Q psy1098 4 LSDDNCPVYR--WRRIDDP-AGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIPPGCA 78 (390)
Q Consensus 4 ~~~~~~~~~~--W~~~~~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p~~r~ 78 (390)
|.++|+.+.+ |+..... ...+..+. ..-+++||+-.... .+++||..+.+ |+..... . .+.
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~-----~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~---~-~~~ 145 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPI-----LGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG---S-PYY 145 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCce-----EEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC---C-eEE
Confidence 5667777654 8766421 01111111 11256766555422 79999996554 6654321 1 333
Q ss_pred eeeEEEeCCEEEEEcceeCCceeecceEEEEcCcc--eeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCC
Q psy1098 79 AYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKW--EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGD 156 (390)
Q Consensus 79 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~--~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~ 156 (390)
....+..++.+|+.- ....++++|..+. .|..-.+.+ ...+.....+.-++.+|+- .....
T Consensus 146 ~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~------~~~~~~~~~~~~~~~vy~~-~~~~~--- 208 (370)
T COG1520 146 ASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP------LSLSIYGSPAIASGTVYVG-SDGYD--- 208 (370)
T ss_pred ecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc------cccccccCceeecceEEEe-cCCCc---
Confidence 333444555555542 1245788887744 687544320 0222222223345556653 22111
Q ss_pred CCCCCCccccccceeeeecCCCceeeeec
Q psy1098 157 ETKPTPSYKYLDDFYTLELKSGHTTVWDM 185 (390)
Q Consensus 157 ~~~~~~~~~~~~~~~~~d~~~~~~~~W~~ 185 (390)
. .++.+|+.+.. ..|+.
T Consensus 209 --------~---~~~a~~~~~G~-~~w~~ 225 (370)
T COG1520 209 --------G---ILYALNAEDGT-LKWSQ 225 (370)
T ss_pred --------c---eEEEEEccCCc-Eeeee
Confidence 1 37778886653 56874
No 108
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=72.86 E-value=60 Score=30.67 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=36.5
Q ss_pred CceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCC
Q psy1098 98 YGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKS 177 (390)
Q Consensus 98 ~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 177 (390)
.+...|++|++|...+.--++.- -.|..|.. ++-..++.+|++-=+. .+-++.+|+.+
T Consensus 401 ~de~~N~vYilDe~lnvvGkltG------l~~gERIY-AvRf~gdv~yiVTfrq---------------tDPlfviDlsN 458 (603)
T COG4880 401 EDEPVNAVYILDENLNVVGKLTG------LAPGERIY-AVRFVGDVLYIVTFRQ---------------TDPLFVIDLSN 458 (603)
T ss_pred CCCccceeEEEcCCCcEEEEEec------cCCCceEE-EEEEeCceEEEEEEec---------------cCceEEEEcCC
Confidence 34556888999888776555543 23455655 3333467777764332 23478889987
Q ss_pred Cc
Q psy1098 178 GH 179 (390)
Q Consensus 178 ~~ 179 (390)
+.
T Consensus 459 Pe 460 (603)
T COG4880 459 PE 460 (603)
T ss_pred CC
Confidence 64
No 109
>KOG1036|consensus
Probab=71.95 E-value=75 Score=28.54 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=46.8
Q ss_pred cEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCce
Q psy1098 211 TKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290 (390)
Q Consensus 211 ~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~ 290 (390)
...+|.||.+ ..+..+|+... .+ .+....+-.-++ ..+.+..+|+|+. -..+
T Consensus 106 ~~~vIsgsWD----~~ik~wD~R~~---~~--~~~~d~~kkVy~-~~v~g~~LvVg~~------------------~r~v 157 (323)
T KOG1036|consen 106 VGCVISGSWD----KTIKFWDPRNK---VV--VGTFDQGKKVYC-MDVSGNRLVVGTS------------------DRKV 157 (323)
T ss_pred CCeEEEcccC----ccEEEEecccc---cc--ccccccCceEEE-EeccCCEEEEeec------------------CceE
Confidence 4457888887 56778888761 11 111111112223 3345556666664 3578
Q ss_pred EEeecCCCeeee-cccc------cccCCCCCCCCCcceeeeCCEEEE
Q psy1098 291 ACLHLPEMTWED-LSVE------VTDDFLPKPRAGHCASVINSRMYI 330 (390)
Q Consensus 291 ~~~d~~~~~W~~-v~~~------~~~~~~p~~r~~~~~~~~~~~l~v 330 (390)
.+||+.+..=-. ..+. ....-.| .+.|+++-.++|++.|
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 889987654111 0000 0000033 5667777777777765
No 110
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=71.92 E-value=83 Score=29.00 Aligned_cols=74 Identities=8% Similarity=0.010 Sum_probs=41.1
Q ss_pred CEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEE-eCCEEEEEcceeC---CceeecceEEEEcCcc
Q psy1098 38 DLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVV-DNTRVLIFGGMVE---YGKYSSDLYELQASKW 113 (390)
Q Consensus 38 ~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~---~~~~~~~v~~~d~~~~ 113 (390)
..+||.-.........++++|..+++-.-. .+.....+.+.. .++.+|+..-.-+ .+....-|.+||..+-
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGm-----i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL 77 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGM-----IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL 77 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEE-----EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEE-----eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC
Confidence 356776553333346789999888775332 233333343333 3456777654432 2345566889999988
Q ss_pred eeE
Q psy1098 114 EWK 116 (390)
Q Consensus 114 ~W~ 116 (390)
+-.
T Consensus 78 ~~~ 80 (342)
T PF06433_consen 78 SPT 80 (342)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 111
>KOG0310|consensus
Probab=71.33 E-value=98 Score=29.60 Aligned_cols=178 Identities=11% Similarity=0.109 Sum_probs=87.7
Q ss_pred EEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCC
Q psy1098 83 VVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTP 162 (390)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 162 (390)
...++.+++.|+-... +-.+|..+..- +.... +..-.-|.+ ++...++.+++-||+++.
T Consensus 119 ~~~d~t~l~s~sDd~v------~k~~d~s~a~v-~~~l~----~htDYVR~g-~~~~~~~hivvtGsYDg~--------- 177 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDKV------VKYWDLSTAYV-QAELS----GHTDYVRCG-DISPANDHIVVTGSYDGK--------- 177 (487)
T ss_pred cccCCeEEEecCCCce------EEEEEcCCcEE-EEEec----CCcceeEee-ccccCCCeEEEecCCCce---------
Confidence 4567888998876422 22234443331 21110 111122222 333446889999999875
Q ss_pred ccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeeccc
Q psy1098 163 SYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQI 242 (390)
Q Consensus 163 ~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~ 242 (390)
+-.+|..... .|.. ......|.- .++.++. +..|...|| +.+-++|+.++
T Consensus 178 -------vrl~DtR~~~--~~v~-elnhg~pVe----~vl~lps---gs~iasAgG------n~vkVWDl~~G------- 227 (487)
T KOG0310|consen 178 -------VRLWDTRSLT--SRVV-ELNHGCPVE----SVLALPS---GSLIASAGG------NSVKVWDLTTG------- 227 (487)
T ss_pred -------EEEEEeccCC--ceeE-EecCCCcee----eEEEcCC---CCEEEEcCC------CeEEEEEecCC-------
Confidence 5566776532 3332 112223322 2444432 455555666 66778887642
Q ss_pred CCCCCCCCcee----eEEEE--CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCCC
Q psy1098 243 LGPQPLPRSLH----TACVI--GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPR 316 (390)
Q Consensus 243 ~~~~p~~r~~~----~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r 316 (390)
+.++..+..| +|..+ ++.-++-||.+ ..+-+||.. .|+.+-.- .+|.+.
T Consensus 228 -~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD------------------~~VKVfd~t--~~Kvv~s~----~~~~pv 282 (487)
T KOG0310|consen 228 -GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD------------------RHVKVFDTT--NYKVVHSW----KYPGPV 282 (487)
T ss_pred -ceehhhhhcccceEEEEEeecCCceEeecccc------------------cceEEEEcc--ceEEEEee----ecccce
Confidence 2333333322 22222 45677777752 467788843 34443321 033333
Q ss_pred CCcceeeeCCEEEEEeccCCc
Q psy1098 317 AGHCASVINSRMYIWSGRDDY 337 (390)
Q Consensus 317 ~~~~~~~~~~~l~v~GG~~~~ 337 (390)
... ++.-++.-+++|+.++.
T Consensus 283 Lsi-avs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 283 LSI-AVSPDDQTVVIGMSNGL 302 (487)
T ss_pred eeE-EecCCCceEEEecccce
Confidence 211 12226778888887764
No 112
>PRK00178 tolB translocation protein TolB; Provisional
Probab=70.57 E-value=1e+02 Score=29.45 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=73.0
Q ss_pred ccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCC
Q psy1098 51 VEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPC 130 (390)
Q Consensus 51 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~ 130 (390)
...++++|+.+++-+.+. ..+..-........+++|++..... + ..++|.+|..+....++....
T Consensus 222 ~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~~~~~~lt~~~-------- 286 (430)
T PRK00178 222 RPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGSKLAFVLSKD--G--NPEIYVMDLASRQLSRVTNHP-------- 286 (430)
T ss_pred CCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCCEEEEEEccC--C--CceEEEEECCCCCeEEcccCC--------
Confidence 357899999888776654 2221111122222344555432221 1 157999999988877665321
Q ss_pred CCccceEEEEC-CEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCC
Q psy1098 131 PRLGHSFTLIG-NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYK 209 (390)
Q Consensus 131 ~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~ 209 (390)
.........-+ ..|++.....+ ...++.+++.+. ++..+...+ .........++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g---~~~~lt~~~-----~~~~~~~~Spd--- 341 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGG---RAERVTFVG-----NYNARPRLSAD--- 341 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCC---CEEEeecCC-----CCccceEECCC---
Confidence 11111111223 45555432211 235888887653 344432111 11112222221
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQ 241 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~ 241 (390)
+..|++.....+ ...++.+|+.+...+.+.
T Consensus 342 g~~i~~~~~~~~--~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 342 GKTLVMVHRQDG--NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred CCEEEEEEccCC--ceEEEEEECCCCCEEEcc
Confidence 444544433222 235899999998877754
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=69.24 E-value=1.1e+02 Score=29.34 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=43.8
Q ss_pred CcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeecc
Q psy1098 225 SDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304 (390)
Q Consensus 225 ~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~ 304 (390)
..+|.+|+.+..-+++...+ .........-+++.+++.+.... ...++++|+++..++.+.
T Consensus 311 ~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---------------~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 311 PQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---------------QQHIAKQDLATGGVQVLT 371 (429)
T ss_pred ceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---------------CceEEEEECCCCCeEEeC
Confidence 47899999887666543211 11111222224544444332110 246889999998887765
Q ss_pred cccccCCCCCCCCCcceeeeCCEEEEEeccCC
Q psy1098 305 VEVTDDFLPKPRAGHCASVINSRMYIWSGRDD 336 (390)
Q Consensus 305 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 336 (390)
.. . ....-...-+++.+++.+.++
T Consensus 372 ~~------~--~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 372 DT------F--LDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred CC------C--CCCCceECCCCCEEEEEEcCC
Confidence 41 1 111122234677677766543
No 114
>KOG0646|consensus
Probab=68.93 E-value=1.1e+02 Score=29.17 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=32.8
Q ss_pred eeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEE--E--CCEEEEEcCccCC
Q psy1098 79 AYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTL--I--GNKVYLFGGLANS 153 (390)
Q Consensus 79 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~--~--~~~l~v~GG~~~~ 153 (390)
-++++..+.-.|++||... ..+|++...+..-..+- .+ .+...+- + ++..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~----------~a-HYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL----------SA-HYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH----------Hh-hccceeEEEEeCCCcEEEecCCCcc
Confidence 3566666777788888432 34667666665322211 11 2222222 2 6788888888764
No 115
>PRK04792 tolB translocation protein TolB; Provisional
Probab=67.57 E-value=1.2e+02 Score=29.24 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=74.1
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCC
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCP 131 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~ 131 (390)
..++.+|+.+++-+.+. ..+......+....+++|++..... + ..++|.+|..+.+.+++.... .
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~tg~~~~lt~~~--------~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIATKALTRITRHR--------A 306 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCC--C--CeEEEEEECCCCCeEECccCC--------C
Confidence 57899999887766554 2222212223333455666553322 1 257999999988777765421 0
Q ss_pred CccceEEEEC-CEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCC
Q psy1098 132 RLGHSFTLIG-NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKN 210 (390)
Q Consensus 132 r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~ 210 (390)
........-+ ..|++...... ..+++.+|+.+. ++..+...+. ........++ +
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g---~~~~Lt~~g~-----~~~~~~~SpD---G 361 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASG---KVSRLTFEGE-----QNLGGSITPD---G 361 (448)
T ss_pred CccceEECCCCCEEEEEECCCC--------------CceEEEEECCCC---CEEEEecCCC-----CCcCeeECCC---C
Confidence 1111111223 44554432211 235888888753 4444321111 1111222221 3
Q ss_pred cEEEEEcCCCCCccCcEEEEecCCCeEeecc
Q psy1098 211 TKLIIYGGMSGNRLSDLFMLDINSMTWQKPQ 241 (390)
Q Consensus 211 ~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~ 241 (390)
..|++.. ..+ ....++++|+.+...+.+.
T Consensus 362 ~~l~~~~-~~~-g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 362 RSMIMVN-RTN-GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CEEEEEE-ecC-CceEEEEEECCCCCeEEcc
Confidence 4444443 222 1246899999988877653
No 116
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=66.11 E-value=1.1e+02 Score=27.97 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=67.7
Q ss_pred CEEEEEcceeCCce---ee-cceEEEEcCcc-----eeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCC
Q psy1098 87 TRVLIFGGMVEYGK---YS-SDLYELQASKW-----EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDE 157 (390)
Q Consensus 87 ~~iyv~GG~~~~~~---~~-~~v~~~d~~~~-----~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 157 (390)
...+++|....... .. -.++.|+.... +...+.... ..-.-.+++.+++++++.-|.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~~~~lv~~~g~------- 107 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSFNGRLVVAVGN------- 107 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEETTEEEEEETT-------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhhCCEEEEeecC-------
Confidence 46667665532211 12 45888888874 555544321 222345566678887665553
Q ss_pred CCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcC-CCCCccCcEEEEecCCCe
Q psy1098 158 TKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGG-MSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 158 ~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG-~~~~~~~~v~~~d~~~~~ 236 (390)
.++.|++.... ++.. .+....+..-.+.... ++.|+ +|. +.+ -.++.|+....+
T Consensus 108 -----------~l~v~~l~~~~--~l~~---~~~~~~~~~i~sl~~~-----~~~I~-vgD~~~s---v~~~~~~~~~~~ 162 (321)
T PF03178_consen 108 -----------KLYVYDLDNSK--TLLK---KAFYDSPFYITSLSVF-----KNYIL-VGDAMKS---VSLLRYDEENNK 162 (321)
T ss_dssp -----------EEEEEEEETTS--SEEE---EEEE-BSSSEEEEEEE-----TTEEE-EEESSSS---EEEEEEETTTE-
T ss_pred -----------EEEEEEccCcc--cchh---hheecceEEEEEEecc-----ccEEE-EEEcccC---EEEEEEEccCCE
Confidence 26667666532 2443 2222222233444444 55444 443 221 234566765555
Q ss_pred EeecccCCCCCCCCceeeEEEE-CCEEEEEc
Q psy1098 237 WQKPQILGPQPLPRSLHTACVI-GDRMFIFG 266 (390)
Q Consensus 237 W~~~~~~~~~p~~r~~~~~~~~-~~~i~i~G 266 (390)
-..+ +....++.-.++..+ ++..++.+
T Consensus 163 l~~v---a~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 163 LILV---ARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEE---EEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEEE---EecCCCccEEEEEEecCCcEEEEE
Confidence 5553 334446666666666 55544443
No 117
>KOG0316|consensus
Probab=65.03 E-value=94 Score=26.99 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=93.4
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCC--EEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCC
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNT--RVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPP 129 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p 129 (390)
+.+..+|..+++-.+.- -..-..--.+.+++ .+.+-|+.+ ..+-.+|-.+++.+.+... .
T Consensus 81 k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQil-------d 142 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQIL-------D 142 (307)
T ss_pred ceEEEEEcccCeeeeec-----ccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchh-------h
Confidence 45888888877632211 00011111233332 466666653 4477888888877766553 3
Q ss_pred CCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCC
Q psy1098 130 CPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYK 209 (390)
Q Consensus 130 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~ 209 (390)
.++.+-..+.+.+..++.|-.++. +-.||+..+. .-.. .+..|. .++... .
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGt----------------vRtydiR~G~--l~sD-----y~g~pi---t~vs~s---~ 193 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGT----------------VRTYDIRKGT--LSSD-----YFGHPI---TSVSFS---K 193 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCc----------------EEEEEeecce--eehh-----hcCCcc---eeEEec---C
Confidence 677777778888888877665543 5678887531 1111 111111 112221 2
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQ 289 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
++...+.|-.+ ..+..+|-++++--+.. .+ ....-+..-++..+..-.|++|.. -..
T Consensus 194 d~nc~La~~l~----stlrLlDk~tGklL~sY-kG-hkn~eykldc~l~qsdthV~sgSE-----------------DG~ 250 (307)
T KOG0316|consen 194 DGNCSLASSLD----STLRLLDKETGKLLKSY-KG-HKNMEYKLDCCLNQSDTHVFSGSE-----------------DGK 250 (307)
T ss_pred CCCEEEEeecc----ceeeecccchhHHHHHh-cc-cccceeeeeeeecccceeEEeccC-----------------Cce
Confidence 55566666544 34555665554322211 11 111122334556666667777752 357
Q ss_pred eEEeecCCCe
Q psy1098 290 LACLHLPEMT 299 (390)
Q Consensus 290 ~~~~d~~~~~ 299 (390)
++.||+...+
T Consensus 251 Vy~wdLvd~~ 260 (307)
T KOG0316|consen 251 VYFWDLVDET 260 (307)
T ss_pred EEEEEeccce
Confidence 8888886554
No 118
>PRK05137 tolB translocation protein TolB; Provisional
Probab=64.55 E-value=1.4e+02 Score=28.70 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=37.0
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecC
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKP 120 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~ 120 (390)
..++++|+.+++...+. ..+...........+.+|++...... ..++|.+|..+....++..
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC
Confidence 67999999888877665 23322222233334455655433211 2579999998887666653
No 119
>PLN00181 protein SPA1-RELATED; Provisional
Probab=64.55 E-value=1.9e+02 Score=30.36 Aligned_cols=22 Identities=9% Similarity=0.419 Sum_probs=16.3
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCC
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSM 235 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~ 235 (390)
++.+++.|+.+ ..+.+||+.+.
T Consensus 629 ~g~~latgs~d----g~I~iwD~~~~ 650 (793)
T PLN00181 629 SGRSLAFGSAD----HKVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEeCC----CeEEEEECCCC
Confidence 57788888765 46888998754
No 120
>KOG2321|consensus
Probab=64.08 E-value=65 Score=31.60 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=45.3
Q ss_pred CCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE--CCEEEEEcCcc
Q psy1098 192 LPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI--GDRMFIFGGWV 269 (390)
Q Consensus 192 ~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~i~i~GG~~ 269 (390)
+..|+.+..++.... +-.+|+.|-. .+||+++++.+.|-..- ....+ .--++-+ -+.++.+||.
T Consensus 130 ~RIP~~GRDm~y~~~---scDly~~gsg-----~evYRlNLEqGrfL~P~---~~~~~--~lN~v~in~~hgLla~Gt~- 195 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKP---SCDLYLVGSG-----SEVYRLNLEQGRFLNPF---ETDSG--ELNVVSINEEHGLLACGTE- 195 (703)
T ss_pred eecCcCCccccccCC---CccEEEeecC-----cceEEEEcccccccccc---ccccc--cceeeeecCccceEEeccc-
Confidence 345555555555422 4456665532 68999999999886521 11111 1222333 3568888885
Q ss_pred cCCCccccccccccceecCceEEeecCCCe
Q psy1098 270 PILKDESRSLHEKEWKCSNQLACLHLPEMT 299 (390)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 299 (390)
...+..+|+.+..
T Consensus 196 -----------------~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 196 -----------------DGVVEFWDPRDKS 208 (703)
T ss_pred -----------------CceEEEecchhhh
Confidence 3577888887654
No 121
>KOG0316|consensus
Probab=62.39 E-value=54 Score=28.39 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=57.7
Q ss_pred CcEEEEecCCCeEeecccCCCCCCCCcee----eEEEEC--CEEEEEcCcccCCCccccccccccceecCceEEeecCCC
Q psy1098 225 SDLFMLDINSMTWQKPQILGPQPLPRSLH----TACVIG--DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEM 298 (390)
Q Consensus 225 ~~v~~~d~~~~~W~~~~~~~~~p~~r~~~----~~~~~~--~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 298 (390)
..+..+|.++++-.+ ...+| .++..+ ..+++-|+. -.++-++|=.++
T Consensus 81 k~v~vwDV~TGkv~R---------r~rgH~aqVNtV~fNeesSVv~Sgsf------------------D~s~r~wDCRS~ 133 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDR---------RFRGHLAQVNTVRFNEESSVVASGSF------------------DSSVRLWDCRSR 133 (307)
T ss_pred ceEEEEEcccCeeee---------ecccccceeeEEEecCcceEEEeccc------------------cceeEEEEcccC
Confidence 568899998876443 11223 223333 346666765 467888999999
Q ss_pred eeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCc
Q psy1098 299 TWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDY 337 (390)
Q Consensus 299 ~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 337 (390)
..+.++. +..++-+-.++.+.+..+|.|-.++.
T Consensus 134 s~ePiQi------ldea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 134 SFEPIQI------LDEAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred CCCccch------hhhhcCceeEEEecccEEEeeccCCc
Confidence 9888887 88889999999999999888887765
No 122
>KOG2321|consensus
Probab=62.14 E-value=79 Score=31.09 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=34.8
Q ss_pred CCceeeEEEe--CCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEE--CCEEEEEcCcc
Q psy1098 76 GCAAYGIVVD--NTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI--GNKVYLFGGLA 151 (390)
Q Consensus 76 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 151 (390)
|+.+..++.. ...||+.|-. ++||++|++..+|..--.. ..+-.+ ++.+ -+.|+++||.+
T Consensus 133 P~~GRDm~y~~~scDly~~gsg-------~evYRlNLEqGrfL~P~~~-------~~~~lN--~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSG-------SEVYRLNLEQGRFLNPFET-------DSGELN--VVSINEEHGLLACGTED 196 (703)
T ss_pred CcCCccccccCCCccEEEeecC-------cceEEEEcccccccccccc-------ccccce--eeeecCccceEEecccC
Confidence 3444444432 3457776533 6799999999988542110 011222 2333 36788899866
Q ss_pred CC
Q psy1098 152 NS 153 (390)
Q Consensus 152 ~~ 153 (390)
+.
T Consensus 197 g~ 198 (703)
T KOG2321|consen 197 GV 198 (703)
T ss_pred ce
Confidence 53
No 123
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.68 E-value=19 Score=21.13 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=15.6
Q ss_pred eEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCC
Q psy1098 254 TACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPE 297 (390)
Q Consensus 254 ~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 297 (390)
+.++.++.+|+.+. ...++++|+++
T Consensus 16 ~~~v~~g~vyv~~~-------------------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-------------------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T-------------------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC-------------------CCEEEEEeCCC
Confidence 33666788887765 36888888764
No 124
>PLN00181 protein SPA1-RELATED; Provisional
Probab=60.54 E-value=2.2e+02 Score=29.84 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=16.4
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCe
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~ 236 (390)
++.+++.|+.+ ..+.+||+.+..
T Consensus 587 ~~~~L~Sgs~D----g~v~iWd~~~~~ 609 (793)
T PLN00181 587 DPTLLASGSDD----GSVKLWSINQGV 609 (793)
T ss_pred CCCEEEEEcCC----CEEEEEECCCCc
Confidence 56788888876 357888887543
No 125
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=59.88 E-value=1.4e+02 Score=27.46 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCCCccCcEEEEecC--CCeEeecccCCCCCC---CC-ceeeEEEE--CCEEEEEcCcccCCCcccccccc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDIN--SMTWQKPQILGPQPL---PR-SLHTACVI--GDRMFIFGGWVPILKDESRSLHE 281 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~--~~~W~~~~~~~~~p~---~r-~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~ 281 (390)
...+|+..-.+ +.|.+|+.. +..++.+......|. .. ..+.+++. +..||+.-..
T Consensus 203 g~~~Yv~~e~s----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------------- 265 (345)
T PF10282_consen 203 GKYAYVVNELS----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------------- 265 (345)
T ss_dssp SSEEEEEETTT----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-------------
T ss_pred cCEEEEecCCC----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-------------
Confidence 67889987654 455555554 777766543333322 22 22333333 3457776432
Q ss_pred ccceecCceEEeec--CCCeeeeccc
Q psy1098 282 KEWKCSNQLACLHL--PEMTWEDLSV 305 (390)
Q Consensus 282 ~~~~~~~~~~~~d~--~~~~W~~v~~ 305 (390)
.+.|.+|++ .+.+.+.+..
T Consensus 266 -----~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 266 -----SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp -----TTEEEEEEECTTTTTEEEEEE
T ss_pred -----CCEEEEEEEecCCCceEEEEE
Confidence 467777776 4456666655
No 126
>PRK05137 tolB translocation protein TolB; Provisional
Probab=57.37 E-value=1.8e+02 Score=27.82 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=31.2
Q ss_pred ccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecC
Q psy1098 51 VEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKP 120 (390)
Q Consensus 51 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~ 120 (390)
...+++.|.....=+.+.. -...-........+++|+.. .... + ...+|++|+.+.+...+..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~---~~~~v~~p~wSpDG~~lay~-s~~~-g--~~~i~~~dl~~g~~~~l~~ 243 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTD---GSSLVLTPRFSPNRQEITYM-SYAN-G--RPRVYLLDLETGQRELVGN 243 (435)
T ss_pred ceEEEEECCCCCCcEEEec---CCCCeEeeEECCCCCEEEEE-EecC-C--CCEEEEEECCCCcEEEeec
Confidence 5678888875444333331 11111112222333444433 2211 1 1569999998887766654
No 127
>KOG0286|consensus
Probab=56.65 E-value=1.5e+02 Score=26.63 Aligned_cols=95 Identities=12% Similarity=0.218 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEee-cccCCCCCCCCceeeEEEE-C-CEEEEEcCcccCCCcccccccccccee
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQK-PQILGPQPLPRSLHTACVI-G-DRMFIFGGWVPILKDESRSLHEKEWKC 286 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~~-~-~~i~i~GG~~~~~~~~~~~~~~~~~~~ 286 (390)
.++++..||.+ +..-+|++.+..=+- +.....++--..+.+++.. + +.|+---|
T Consensus 108 Sg~~VAcGGLd----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG------------------- 164 (343)
T KOG0286|consen 108 SGNFVACGGLD----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG------------------- 164 (343)
T ss_pred CCCeEEecCcC----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-------------------
Confidence 78899999987 456677776442221 0112234444555566655 3 44444444
Q ss_pred cCceEEeecCCCeeeecccccccCCCCCCCCCcceeee-------CCEEEEEeccCCccc
Q psy1098 287 SNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI-------NSRMYIWSGRDDYKK 339 (390)
Q Consensus 287 ~~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~-------~~~l~v~GG~~~~~~ 339 (390)
-..+-.+|+++.+=+..- .+|++-++ +.+.||-||++...+
T Consensus 165 D~TCalWDie~g~~~~~f------------~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 165 DMTCALWDIETGQQTQVF------------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred CceEEEEEcccceEEEEe------------cCCcccEEEEecCCCCCCeEEeccccccee
Confidence 346778888887643321 12322111 578999999986543
No 128
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=55.59 E-value=1.4e+02 Score=26.13 Aligned_cols=234 Identities=18% Similarity=0.223 Sum_probs=99.4
Q ss_pred CCcEEeeeecCCCC--CCCceeeEEE--eCCEEEEEcceeCCcee--ecce-EEEEcC-cceeEEecCCCCC-CCCCCCC
Q psy1098 61 TNQWFIPTLKGDIP--PGCAAYGIVV--DNTRVLIFGGMVEYGKY--SSDL-YELQAS-KWEWKRLKPKPPR-FGSPPCP 131 (390)
Q Consensus 61 ~~~W~~~~~~~~~p--~~r~~~~~~~--~~~~iyv~GG~~~~~~~--~~~v-~~~d~~-~~~W~~~~~~~~~-~~~~p~~ 131 (390)
..+|+........+ ..+....+.+ .+++|+++-........ ...+ +..... ..+|+.....+.. ......+
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGP 108 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEEC
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceecc
Confidence 46698766532333 2233333332 37788888633222211 1111 234443 4578876532210 0001111
Q ss_pred CccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCc
Q psy1098 132 RLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNT 211 (390)
Q Consensus 132 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~ 211 (390)
-....+..-++.+++. ...... ........+.-.. ..+|+...... ........+.+.. .++
T Consensus 109 ~~~~~i~~~~G~l~~~-~~~~~~----------~~~~~~~~~S~D~--G~tW~~~~~~~--~~~~~~e~~~~~~---~dG 170 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAP-YYHESG----------GSFSAFVYYSDDG--GKTWSSGSPIP--DGQGECEPSIVEL---PDG 170 (275)
T ss_dssp SEEEEEEECTTEEEEE-EEEESS----------CEEEEEEEEESST--TSSEEEEEECE--CSEEEEEEEEEEE---TTS
T ss_pred ceeeeeEecCCCEEEE-Eeeccc----------cCcceEEEEeCCC--Cceeecccccc--ccCCcceeEEEEC---CCC
Confidence 1111223336777776 211110 1122233333333 25798754432 2212223333211 267
Q ss_pred EEEEEcCCCCCccCcEEEEecC-CCeEeecccCCCCCCCCceeeEEEE-CCEEEEEcCcccCCCccccccccccceecCc
Q psy1098 212 KLIIYGGMSGNRLSDLFMLDIN-SMTWQKPQILGPQPLPRSLHTACVI-GDRMFIFGGWVPILKDESRSLHEKEWKCSNQ 289 (390)
Q Consensus 212 ~i~v~GG~~~~~~~~v~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
+|+++--..... .-.+.+... ..+|+.... ..+|.+......+.+ +++++++...... +. .-.
T Consensus 171 ~l~~~~R~~~~~-~~~~~~S~D~G~TWs~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--r~-----------~l~ 235 (275)
T PF13088_consen 171 RLLAVFRTEGND-DIYISRSTDGGRTWSPPQP-TNLPNPNSSISLVRLSDGRLLLVYNNPDG--RS-----------NLS 235 (275)
T ss_dssp EEEEEEEECSST-EEEEEEESSTTSS-EEEEE-EECSSCCEEEEEEECTTSEEEEEEECSST--SE-----------EEE
T ss_pred cEEEEEEccCCC-cEEEEEECCCCCcCCCcee-cccCcccCCceEEEcCCCCEEEEEECCCC--CC-----------ceE
Confidence 888776432111 223333333 457998541 244555555555554 5688877662110 00 123
Q ss_pred eEEeecCCCeeeecccccccCCCCCCCCCc-ceeee-CCEEEE
Q psy1098 290 LACLHLPEMTWEDLSVEVTDDFLPKPRAGH-CASVI-NSRMYI 330 (390)
Q Consensus 290 ~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~-~~~~~-~~~l~v 330 (390)
+++-.-...+|+....... -+...+++ +++.. +++|+|
T Consensus 236 l~~S~D~g~tW~~~~~i~~---~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 236 LYVSEDGGKTWSRPKTIDD---GPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEECTTCEEEEEEEEEEE---EE-CCEEEEEEEEEETTEEEE
T ss_pred EEEEeCCCCcCCccEEEeC---CCCCcEECCeeEEeCCCcCCC
Confidence 3333335788987654100 11122333 34444 568876
No 129
>PRK04043 tolB translocation protein TolB; Provisional
Probab=55.59 E-value=1.9e+02 Score=27.61 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=77.9
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCC
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCP 131 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~ 131 (390)
.++|++|+.+++=+.+. ..+...........+.+|++.-.... ..++|.+|..+..++++...+ ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~-------~~ 278 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYP-------GI 278 (419)
T ss_pred CEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCC-------Cc
Confidence 47999999888766665 22211111222233446655433211 357999999888888876532 10
Q ss_pred CccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCc
Q psy1098 132 RLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNT 211 (390)
Q Consensus 132 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~ 211 (390)
-........+.+|++.....+ ..+++.+|+.+. +.+++...+. .. . ...|+ +.
T Consensus 279 d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g---~~~rlt~~g~-----~~-~-~~SPD---G~ 331 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSG---SVEQVVFHGK-----NN-S-SVSTY---KN 331 (419)
T ss_pred cCccEECCCCCEEEEEECCCC--------------CceEEEEECCCC---CeEeCccCCC-----cC-c-eECCC---CC
Confidence 111111222456766554321 236899988764 3333322111 11 1 22221 33
Q ss_pred EEEEEcCCCCC----ccCcEEEEecCCCeEeeccc
Q psy1098 212 KLIIYGGMSGN----RLSDLFMLDINSMTWQKPQI 242 (390)
Q Consensus 212 ~i~v~GG~~~~----~~~~v~~~d~~~~~W~~~~~ 242 (390)
.|.+....... ...+++++|+++..++.+..
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence 34333322211 12579999999999888653
No 130
>KOG0282|consensus
Probab=54.71 E-value=36 Score=32.35 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE---CCEEEEEcCccc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI---GDRMFIFGGWVP 270 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~i~i~GG~~~ 270 (390)
.+.-++..|++ ..+-.+|.+|++-..--..+.+| .++.. +..+|+.||.+.
T Consensus 269 ~g~~fLS~sfD----~~lKlwDtETG~~~~~f~~~~~~------~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 269 CGTSFLSASFD----RFLKLWDTETGQVLSRFHLDKVP------TCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred cCCeeeeeecc----eeeeeeccccceEEEEEecCCCc------eeeecCCCCCcEEEEecCCC
Confidence 56667777775 35778899988765522122222 33333 358999999854
No 131
>KOG0646|consensus
Probab=54.21 E-value=2e+02 Score=27.44 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=33.2
Q ss_pred eeeeEEeCCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeE-EEeCCEEEEEccee
Q psy1098 30 GHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGI-VVDNTRVLIFGGMV 96 (390)
Q Consensus 30 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~ 96 (390)
-++++..+.-.|++|| ....++|++...++.--.+- .-..+.--+. ...+++.++.||.+
T Consensus 84 v~al~s~n~G~~l~ag---~i~g~lYlWelssG~LL~v~----~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG---TISGNLYLWELSSGILLNVL----SAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred eeeeecCCCceEEEee---cccCcEEEEEeccccHHHHH----HhhccceeEEEEeCCCcEEEecCCC
Confidence 4555566666888888 34456888887776632111 0000111111 24467888888875
No 132
>PTZ00420 coronin; Provisional
Probab=53.64 E-value=2.5e+02 Score=28.21 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=16.3
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCC
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINS 234 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~ 234 (390)
++..++.+|.++.....+.+||+.+
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCC
Confidence 5566777776554334688888774
No 133
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=52.79 E-value=1.9e+02 Score=26.64 Aligned_cols=65 Identities=9% Similarity=0.129 Sum_probs=39.0
Q ss_pred CcEEEEecCCCeEeecccCCCCCCCCceeeEEEEC-CEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeec
Q psy1098 225 SDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIG-DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDL 303 (390)
Q Consensus 225 ~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v 303 (390)
+.+..|+.+.+.-+.....-..|-.-..|-+.--+ .-.|++.-.+. .-.++.||....+.+.+
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s----------------tV~v~~y~~~~g~~~~l 230 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS----------------TVDVLEYNPAVGKFEEL 230 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC----------------EEEEEEEcCCCceEEEe
Confidence 77889998877766644322222222233333333 45888876532 34677888877888888
Q ss_pred cc
Q psy1098 304 SV 305 (390)
Q Consensus 304 ~~ 305 (390)
+.
T Consensus 231 Q~ 232 (346)
T COG2706 231 QT 232 (346)
T ss_pred ee
Confidence 76
No 134
>KOG4378|consensus
Probab=51.70 E-value=95 Score=29.98 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEe
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQ 238 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~ 238 (390)
+..|++.-|++ ..|+.||.....-+
T Consensus 220 ne~l~vsVG~D----kki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 220 NEALLVSVGYD----KKINIYDIRSQAST 244 (673)
T ss_pred ccceEEEeccc----ceEEEeeccccccc
Confidence 78899988987 67999998855433
No 135
>PTZ00421 coronin; Provisional
Probab=50.70 E-value=2.6e+02 Score=27.53 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.4
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCe
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~ 236 (390)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 179 dG~lLatgs~D----g~IrIwD~rsg~ 201 (493)
T PTZ00421 179 DGSLLCTTSKD----KKLNIIDPRDGT 201 (493)
T ss_pred CCCEEEEecCC----CEEEEEECCCCc
Confidence 67788888776 468889988764
No 136
>KOG0318|consensus
Probab=50.24 E-value=2.6e+02 Score=27.39 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE--CCEEEEEcCcccCCCccccccccccceec
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI--GDRMFIFGGWVPILKDESRSLHEKEWKCS 287 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 287 (390)
++..+.+||.++ .+++|.+....-.+ .......|...+.+.+ +++++..|-. .
T Consensus 454 ~~~~vaVGG~Dg----kvhvysl~g~~l~e---e~~~~~h~a~iT~vaySpd~~yla~~Da------------------~ 508 (603)
T KOG0318|consen 454 DGSEVAVGGQDG----KVHVYSLSGDELKE---EAKLLEHRAAITDVAYSPDGAYLAAGDA------------------S 508 (603)
T ss_pred CCCEEEEecccc----eEEEEEecCCcccc---eeeeecccCCceEEEECCCCcEEEEecc------------------C
Confidence 788899999885 48888887755433 2233334444555555 5667777654 6
Q ss_pred CceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCccccccceeeeCeeEEEEecCCCCC
Q psy1098 288 NQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVEKPGPP 361 (390)
Q Consensus 288 ~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~~~~~~ 361 (390)
.++..||.++++- +... -.+..+|...-+-.-+++++.-|..+ ..+....++.|...
T Consensus 509 rkvv~yd~~s~~~-~~~~----w~FHtakI~~~aWsP~n~~vATGSlD------------t~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 509 RKVVLYDVASREV-KTNR----WAFHTAKINCVAWSPNNKLVATGSLD------------TNVIIYSVKKPAKH 565 (603)
T ss_pred CcEEEEEcccCce-ecce----eeeeeeeEEEEEeCCCceEEEecccc------------ceEEEEEccChhhh
Confidence 7889999887763 1111 00222333222222367777777776 34555555655554
No 137
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=49.29 E-value=2.4e+02 Score=26.72 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=78.9
Q ss_pred ecceEEEEcCcc-----eeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecC
Q psy1098 102 SSDLYELQASKW-----EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELK 176 (390)
Q Consensus 102 ~~~v~~~d~~~~-----~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (390)
.+++|..+.... .|..+.+. ..-..+.+...++.+|+....+ .....+..+++.
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~--------~~~~~~~v~~~~~~~yi~Tn~~-------------a~~~~l~~~~l~ 309 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR--------EDGVEYYVDHHGDRLYILTNDD-------------APNGRLVAVDLA 309 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES--------SSS-EEEEEEETTEEEEEE-TT--------------TT-EEEEEETT
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC--------CCceEEEEEccCCEEEEeeCCC-------------CCCcEEEEeccc
Confidence 478999998874 78877642 2223333444588999876633 334468888888
Q ss_pred CCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecC-CCeEeecccCCCCCCCCceeeE
Q psy1098 177 SGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDIN-SMTWQKPQILGPQPLPRSLHTA 255 (390)
Q Consensus 177 ~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~-~~~W~~~~~~~~~p~~r~~~~~ 255 (390)
++....|..+-. .......-..+... ++.+++.-=.++ ...|.++++. +..-..+ .+|. .+...
T Consensus 310 ~~~~~~~~~~l~--~~~~~~~l~~~~~~-----~~~Lvl~~~~~~--~~~l~v~~~~~~~~~~~~----~~p~--~g~v~ 374 (414)
T PF02897_consen 310 DPSPAEWWTVLI--PEDEDVSLEDVSLF-----KDYLVLSYRENG--SSRLRVYDLDDGKESREI----PLPE--AGSVS 374 (414)
T ss_dssp STSGGGEEEEEE----SSSEEEEEEEEE-----TTEEEEEEEETT--EEEEEEEETT-TEEEEEE----ESSS--SSEEE
T ss_pred ccccccceeEEc--CCCCceeEEEEEEE-----CCEEEEEEEECC--ccEEEEEECCCCcEEeee----cCCc--ceEEe
Confidence 876445663211 11111122222333 667666643222 3578899988 3332221 2221 11111
Q ss_pred EEE----CCEEEE-EcCcccCCCccccccccccceecCceEEeecCCCeeeecc
Q psy1098 256 CVI----GDRMFI-FGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304 (390)
Q Consensus 256 ~~~----~~~i~i-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~ 304 (390)
... .+.+++ +.+.. .-..++.||+.+++.+.+.
T Consensus 375 ~~~~~~~~~~~~~~~ss~~----------------~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 375 GVSGDFDSDELRFSYSSFT----------------TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEES-TT-SEEEEEEEETT----------------EEEEEEEEETTTTCEEEEE
T ss_pred ccCCCCCCCEEEEEEeCCC----------------CCCEEEEEECCCCCEEEEE
Confidence 111 244443 34432 1458999999999877654
No 138
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=48.97 E-value=1.4e+02 Score=24.04 Aligned_cols=81 Identities=10% Similarity=0.140 Sum_probs=47.9
Q ss_pred EEeCCEEEEEccCCCCcc-cceEEEECCCCcE-EeeeecCCCCCCCc----eeeEE-EeCCEEEEEcceeCCceeecceE
Q psy1098 34 VAIKDLMLVFGGGNEGIV-EELHVFNTATNQW-FIPTLKGDIPPGCA----AYGIV-VDNTRVLIFGGMVEYGKYSSDLY 106 (390)
Q Consensus 34 ~~~~~~iyv~GG~~~~~~-~~~~~~d~~~~~W-~~~~~~~~~p~~r~----~~~~~-~~~~~iyv~GG~~~~~~~~~~v~ 106 (390)
+.++|.+|=++-...... ..+..||+.+.+. ..++ +|.... ...+. +.+++|.++--. .....-+||
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~----lP~~~~~~~~~~~L~~v~~~~L~~~~~~--~~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP----LPFCNDDDDDSVSLSVVRGDCLCVLYQC--DETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC----CCCccCccCCEEEEEEecCCEEEEEEec--cCCccEEEE
Confidence 467788777776444322 2799999999999 5554 343222 23332 336677776322 112235788
Q ss_pred EEEc---CcceeEEecC
Q psy1098 107 ELQA---SKWEWKRLKP 120 (390)
Q Consensus 107 ~~d~---~~~~W~~~~~ 120 (390)
+.+- ...+|+++-.
T Consensus 76 vm~~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 76 VMKKYGYGKESWTKLFT 92 (164)
T ss_pred EEeeeccCcceEEEEEE
Confidence 8762 3668988643
No 139
>PRK04922 tolB translocation protein TolB; Provisional
Probab=48.47 E-value=2.5e+02 Score=26.84 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=34.2
Q ss_pred CcEEEEecCCCeEeecccCCCCCCCCceeeEEE-EC-CEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeee
Q psy1098 225 SDLFMLDINSMTWQKPQILGPQPLPRSLHTACV-IG-DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWED 302 (390)
Q Consensus 225 ~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 302 (390)
..+|.+|+.+.+.+++...+ ........ -+ ..|++..+... ...++++|+.+...+.
T Consensus 316 ~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~----------------~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 316 PQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG----------------QYRIAVMDLSTGSVRT 374 (433)
T ss_pred ceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCCC----------------ceeEEEEECCCCCeEE
Confidence 46899999888877754221 11111222 23 44555433110 2378899998888776
Q ss_pred ccc
Q psy1098 303 LSV 305 (390)
Q Consensus 303 v~~ 305 (390)
+..
T Consensus 375 Lt~ 377 (433)
T PRK04922 375 LTP 377 (433)
T ss_pred CCC
Confidence 653
No 140
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.46 E-value=2.2e+02 Score=25.79 Aligned_cols=172 Identities=14% Similarity=0.193 Sum_probs=85.6
Q ss_pred ccceEEEECCEEEEEcCccCCCCC-----CCCCCCcc-ccccceeeeecCCCceee-eeccccCCCCCCCCceeeeEEee
Q psy1098 133 LGHSFTLIGNKVYLFGGLANSGGD-----ETKPTPSY-KYLDDFYTLELKSGHTTV-WDMPGTYGGLPSPRESHTACSWT 205 (390)
Q Consensus 133 ~~~~~~~~~~~l~v~GG~~~~~~~-----~~~~~~~~-~~~~~~~~~d~~~~~~~~-W~~~~~~~~~p~~r~~~~~~~~~ 205 (390)
...++..+++.|| |||.-..... ..+...++ .-.+.++.||+.+...+- |.. .-.-+...++-.+-.+
T Consensus 38 TYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke---sih~~~~WaGEVSdIl- 112 (339)
T PF09910_consen 38 TYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE---SIHDKTKWAGEVSDIL- 112 (339)
T ss_pred cceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec---ccCCccccccchhhee-
Confidence 4445555677776 6776532110 00000100 113358889887643222 665 2222333332222111
Q ss_pred ccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccce
Q psy1098 206 DEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWK 285 (390)
Q Consensus 206 ~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~ 285 (390)
.+.-++++++.=+ +|...-.+|..|..+..-+++.. .|.. -.+.+++..+|-+ +....
T Consensus 113 YdP~~D~LLlAR~-DGh~nLGvy~ldr~~g~~~~L~~---~ps~---KG~~~~D~a~F~i---~~~~~------------ 170 (339)
T PF09910_consen 113 YDPYEDRLLLARA-DGHANLGVYSLDRRTGKAEKLSS---NPSL---KGTLVHDYACFGI---NNFHK------------ 170 (339)
T ss_pred eCCCcCEEEEEec-CCcceeeeEEEcccCCceeeccC---CCCc---CceEeeeeEEEec---ccccc------------
Confidence 1223666666532 22223468999999988887542 2222 2334444444422 11110
Q ss_pred ecCceEEeecCCCee--eecccccccCCCCC-CCCCcceeeeCCEEEEE
Q psy1098 286 CSNQLACLHLPEMTW--EDLSVEVTDDFLPK-PRAGHCASVINSRMYIW 331 (390)
Q Consensus 286 ~~~~~~~~d~~~~~W--~~v~~~~~~~~~p~-~r~~~~~~~~~~~l~v~ 331 (390)
-.+.+.+||+.+++| +..+.....+.-+. .|..-+++...++++.|
T Consensus 171 g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 171 GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred CCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 167999999999999 44433222222222 34455677777887766
No 141
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=46.88 E-value=2.5e+02 Score=26.23 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=40.9
Q ss_pred CcEEEEE--cCCCCC---ccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE-CC--EEEEEcCcccCCCcccccccc
Q psy1098 210 NTKLIIY--GGMSGN---RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI-GD--RMFIFGGWVPILKDESRSLHE 281 (390)
Q Consensus 210 ~~~i~v~--GG~~~~---~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~--~i~i~GG~~~~~~~~~~~~~~ 281 (390)
.+++||. |+..+. .-+.++++|+.+.+-.. ..+..+.-+++++. ++ .+|+.-+.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-----~i~vG~~~~~iavS~Dgkp~lyvtn~~------------- 320 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-----KIELGHEIDSINVSQDAKPLLYALSTG------------- 320 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-----EEeCCCceeeEEECCCCCeEEEEeCCC-------------
Confidence 7888874 332222 24689999988776544 23333444455544 33 46666543
Q ss_pred ccceecCceEEeecCCCe
Q psy1098 282 KEWKCSNQLACLHLPEMT 299 (390)
Q Consensus 282 ~~~~~~~~~~~~d~~~~~ 299 (390)
.+++.++|..+.+
T Consensus 321 -----s~~VsViD~~t~k 333 (352)
T TIGR02658 321 -----DKTLYIFDAETGK 333 (352)
T ss_pred -----CCcEEEEECcCCe
Confidence 5679999988875
No 142
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=46.54 E-value=2.2e+02 Score=25.54 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=47.4
Q ss_pred EEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeE----EEECCEEEEEcCcccCCCccccccccccceec
Q psy1098 212 KLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTA----CVIGDRMFIFGGWVPILKDESRSLHEKEWKCS 287 (390)
Q Consensus 212 ~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~----~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 287 (390)
-+++.||. .+.++.....+.|+.+.. +....|..... -...+.+||.|+-
T Consensus 227 g~la~g~q-----g~~f~~~~~gD~wsd~~~--~~~~g~~~~Gl~d~a~~a~~~v~v~G~g------------------- 280 (339)
T COG4447 227 GLLARGGQ-----GDQFSWVCGGDEWSDQGE--PVNLGRRSWGLLDFAPRAPPEVWVSGIG------------------- 280 (339)
T ss_pred ceEEEccc-----cceeecCCCccccccccc--chhcccCCCccccccccCCCCeEEeccC-------------------
Confidence 46677765 244566667788887532 11122222222 2236889998862
Q ss_pred CceEEeecCCCeeeecccccccCCCCCCCCCcceeee--CCEEEEEec
Q psy1098 288 NQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI--NSRMYIWSG 333 (390)
Q Consensus 288 ~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG 333 (390)
.++..=-....+|.+... .+....+...+++ +++.+++|=
T Consensus 281 Gnvl~StdgG~t~skd~g------~~er~s~l~~V~~ts~~~~~l~Gq 322 (339)
T COG4447 281 GNVLASTDGGTTWSKDGG------VEERVSNLYSVVFTSPKAGFLCGQ 322 (339)
T ss_pred ccEEEecCCCeeEeccCC------hhhhhhhhheEEeccCCceEEEcC
Confidence 344433345667887654 3333332334433 566777763
No 143
>PRK01742 tolB translocation protein TolB; Provisional
Probab=46.15 E-value=2.7e+02 Score=26.57 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=23.3
Q ss_pred CceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCC
Q psy1098 288 NQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDD 336 (390)
Q Consensus 288 ~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 336 (390)
+.++++|+.+.+++.+... . ....-...-++++++++..++
T Consensus 353 ~~i~~~Dl~~g~~~~lt~~-----~---~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 353 DNVVKQDLTSGSTEVLSST-----F---LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred CCEEEEECCCCCeEEecCC-----C---CCCCceECCCCCEEEEEEcCC
Confidence 3567789988888765431 1 111122233677777776543
No 144
>KOG0265|consensus
Probab=45.38 E-value=2.3e+02 Score=25.55 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=42.1
Q ss_pred CCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEee-ccCCCcEEEEEcCC
Q psy1098 141 GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWT-DEYKNTKLIIYGGM 219 (390)
Q Consensus 141 ~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~~~~~~i~v~GG~ 219 (390)
++..++-||.+.. ++.++++....|.|.. . +|..++.. ....++..++..|.
T Consensus 58 ~gs~~aSgG~Dr~----------------I~LWnv~gdceN~~~l---k--------gHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 58 DGSCFASGGSDRA----------------IVLWNVYGDCENFWVL---K--------GHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred CCCeEeecCCcce----------------EEEEeccccccceeee---c--------cccceeEeeeeccCCCEEEEecC
Confidence 6788999998764 6777766665677775 1 23333321 01114555555555
Q ss_pred CCCccCcEEEEecCCCeEee
Q psy1098 220 SGNRLSDLFMLDINSMTWQK 239 (390)
Q Consensus 220 ~~~~~~~v~~~d~~~~~W~~ 239 (390)
+ ..+..+|.++++-.+
T Consensus 111 D----k~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 111 D----KTVRGWDAETGKRIR 126 (338)
T ss_pred C----ceEEEEecccceeee
Confidence 4 568899999876554
No 145
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=44.35 E-value=2.7e+02 Score=25.97 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=66.7
Q ss_pred cceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCC-----CCCccCcEEEEecCCCeEeeccc
Q psy1098 168 DDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGM-----SGNRLSDLFMLDINSMTWQKPQI 242 (390)
Q Consensus 168 ~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~-----~~~~~~~v~~~d~~~~~W~~~~~ 242 (390)
+.++.+|..+. +.+. ..+.+...+.. ..++ +..+|+.-.+ .|.+.+.|.+||+.+.+-..--.
T Consensus 27 ~~v~ViD~~~~-----~v~g---~i~~G~~P~~~-~spD---g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 27 TQVYTIDGEAG-----RVLG---MTDGGFLPNPV-VASD---GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred ceEEEEECCCC-----EEEE---EEEccCCCcee-ECCC---CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 56888888752 2211 12222222333 3332 6788888763 23346789999999987654221
Q ss_pred CCCCCCCCce-----eeEEE-ECC-EEEEEcCcccCCCccccccccccceecCceEEeecCCCeeee-cccccccCCCCC
Q psy1098 243 LGPQPLPRSL-----HTACV-IGD-RMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWED-LSVEVTDDFLPK 314 (390)
Q Consensus 243 ~~~~p~~r~~-----~~~~~-~~~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~-v~~~~~~~~~p~ 314 (390)
.+ +.||.. ...+. -++ .+||.- .+ ....+-+.|+++++-.. ++.+....-+|.
T Consensus 95 ~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~----------------p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t 155 (352)
T TIGR02658 95 LP--EGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS----------------PSPAVGVVDLEGKAFVRMMDVPDCYHIFPT 155 (352)
T ss_pred cC--CCchhhccCccceEEECCCCCEEEEec-CC----------------CCCEEEEEECCCCcEEEEEeCCCCcEEEEe
Confidence 22 333321 12222 244 466653 11 13578889988877543 444322222334
Q ss_pred CCCCcceeeeCCEEE
Q psy1098 315 PRAGHCASVINSRMY 329 (390)
Q Consensus 315 ~r~~~~~~~~~~~l~ 329 (390)
....+.+.+.++++.
T Consensus 156 ~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 156 ANDTFFMHCRDGSLA 170 (352)
T ss_pred cCCccEEEeecCceE
Confidence 444444444554433
No 146
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.61 E-value=2.5e+02 Score=25.48 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCC--ceeeEEEECCEEEEEcCccc
Q psy1098 193 PSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPR--SLHTACVIGDRMFIFGGWVP 270 (390)
Q Consensus 193 p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r--~~~~~~~~~~~i~i~GG~~~ 270 (390)
|.|-.+|.++..|. ...+++|+=+.+ .-+.++|+.+.+=.. .-..+..| ++|++...+++.+..--.+.
T Consensus 2 ~lP~RgH~~a~~p~---~~~avafaRRPG---~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 2 PLPARGHGVAAHPT---RPEAVAFARRPG---TFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGRLLYTTENDY 72 (305)
T ss_pred CCCccccceeeCCC---CCeEEEEEeCCC---cEEEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCCEEEEecccc
Confidence 34445688887753 677888876655 457789998876443 22345555 56777766666544432211
Q ss_pred CCCccccccccccceecCceEEeecCCCeeeecccccccCCCCCC-CCCcceeee-CC-EEEEE-eccC
Q psy1098 271 ILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKP-RAGHCASVI-NS-RMYIW-SGRD 335 (390)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~p~~-r~~~~~~~~-~~-~l~v~-GG~~ 335 (390)
.. -..-|-+||.. ....++.. ++.. .-=|-+... ++ .|+|. ||..
T Consensus 73 ~~-------------g~G~IgVyd~~-~~~~ri~E------~~s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 73 ET-------------GRGVIGVYDAA-RGYRRIGE------FPSHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred CC-------------CcEEEEEEECc-CCcEEEeE------ecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 11 03568899987 67777776 5543 334666666 44 45555 6664
No 147
>PRK02889 tolB translocation protein TolB; Provisional
Probab=42.91 E-value=3.1e+02 Score=26.22 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=33.0
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEec
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLK 119 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~ 119 (390)
..++++|..+++=..+. ..+...........+++|++...... ..++|.+|..+....++.
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLT 280 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECC
Confidence 56899999887655554 22211111222223445655433221 257899998776655554
No 148
>KOG0318|consensus
Probab=42.72 E-value=3.4e+02 Score=26.63 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=20.6
Q ss_pred CceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCe
Q psy1098 196 RESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 196 r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~ 236 (390)
|..-+.+.+.. +++++..|... .++..||.++..
T Consensus 487 ~a~iT~vaySp---d~~yla~~Da~----rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 487 RAAITDVAYSP---DGAYLAAGDAS----RKVVLYDVASRE 520 (603)
T ss_pred cCCceEEEECC---CCcEEEEeccC----CcEEEEEcccCc
Confidence 33344555433 77777777654 567788877543
No 149
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=39.54 E-value=2.3e+02 Score=23.72 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred cCcEEEEecCCCeEeecccCCC--CCCCCceeeEEEEC-C-EEEEEcCcccCCCccccccccccceecCceEEeecCCCe
Q psy1098 224 LSDLFMLDINSMTWQKPQILGP--QPLPRSLHTACVIG-D-RMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT 299 (390)
Q Consensus 224 ~~~v~~~d~~~~~W~~~~~~~~--~p~~r~~~~~~~~~-~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 299 (390)
..+||++|..++.|..+..... .-.|. -+.-++ . -++|+|-..+.-.. -..+++|++.+++
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~------------GGnLy~~nl~tg~ 151 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSK------------GGNLYKYNLNTGN 151 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEcc------------CCeEEEEEccCCc
Confidence 6789999999888877643222 11222 223333 3 35666643322111 2589999999999
Q ss_pred eeeccc
Q psy1098 300 WEDLSV 305 (390)
Q Consensus 300 W~~v~~ 305 (390)
-+.+-.
T Consensus 152 ~~~ly~ 157 (200)
T PF15525_consen 152 LTELYE 157 (200)
T ss_pred eeEeee
Confidence 887765
No 150
>PRK01742 tolB translocation protein TolB; Provisional
Probab=36.96 E-value=3.8e+02 Score=25.59 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=31.4
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEec
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLK 119 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~ 119 (390)
..++.+|..++.-+.+. ..+......+....+.+|++..... +. .++|.+|..+....++.
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g~~~~~~wSPDG~~La~~~~~~--g~--~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRGHNGAPAFSPDGSRLAFASSKD--GV--LNIYVMGANGGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCCccCceeECCCCCEEEEEEecC--Cc--EEEEEEECCCCCeEeec
Confidence 46888898877655554 2222111112222233454433221 11 35888998877666654
No 151
>KOG1523|consensus
Probab=36.89 E-value=2.1e+02 Score=26.06 Aligned_cols=100 Identities=11% Similarity=0.199 Sum_probs=48.9
Q ss_pred ceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEec-CCCeEeecccCCCCC
Q psy1098 169 DFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDI-NSMTWQKPQILGPQP 247 (390)
Q Consensus 169 ~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~-~~~~W~~~~~~~~~p 247 (390)
++..|..... +-|+............. .+.+.. ..++ ++.++.+ ...|++.. +..+|... +-
T Consensus 33 evhiy~~~~~--~~w~~~htls~Hd~~vt---gvdWap--~snr-Ivtcs~d----rnayVw~~~~~~~Wkpt-----lv 95 (361)
T KOG1523|consen 33 EVHIYSMLGA--DLWEPAHTLSEHDKIVT---GVDWAP--KSNR-IVTCSHD----RNAYVWTQPSGGTWKPT-----LV 95 (361)
T ss_pred eEEEEEecCC--CCceeceehhhhCccee---EEeecC--CCCc-eeEccCC----CCccccccCCCCeeccc-----ee
Confidence 5777776652 23887554333222111 122211 1334 4455544 33556665 78889872 22
Q ss_pred CCCceee--EEEE---CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeee
Q psy1098 248 LPRSLHT--ACVI---GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWED 302 (390)
Q Consensus 248 ~~r~~~~--~~~~---~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 302 (390)
.-|..-+ ++.. ++++-+.+|.. .-.+..|.-+++-|-.
T Consensus 96 LlRiNrAAt~V~WsP~enkFAVgSgar-----------------~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 96 LLRINRAATCVKWSPKENKFAVGSGAR-----------------LISVCYYEQENDWWVS 138 (361)
T ss_pred EEEeccceeeEeecCcCceEEeccCcc-----------------EEEEEEEecccceehh
Confidence 2232222 2222 56666666641 4567777766666644
No 152
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=36.81 E-value=3.7e+02 Score=25.38 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=79.2
Q ss_pred EEEEccCCCCcccceEEEECCCC-----cEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcce
Q psy1098 40 MLVFGGGNEGIVEELHVFNTATN-----QWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWE 114 (390)
Q Consensus 40 iyv~GG~~~~~~~~~~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~ 114 (390)
++|.-..... .+.++.+|.... .|..+.. +..-..+.+...++.+|+.-... .....+..+++....
T Consensus 241 l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~~---a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 241 LFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLYILTNDD---APNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTS
T ss_pred EEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEEEeeCCC---CCCcEEEEecccccc
Confidence 3433333333 588999999875 7877762 22223334445588888876532 222356777776554
Q ss_pred ---eE-EecCCCCCCCCCCCC-CccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccC
Q psy1098 115 ---WK-RLKPKPPRFGSPPCP-RLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTY 189 (390)
Q Consensus 115 ---W~-~~~~~~~~~~~~p~~-r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~ 189 (390)
|. .+.+. .. ..--.+...++.|++.-=.+ ....+..+++.. .|.....
T Consensus 313 ~~~~~~~l~~~--------~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~----~~~~~~~- 365 (414)
T PF02897_consen 313 PAEWWTVLIPE--------DEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDD----GKESREI- 365 (414)
T ss_dssp GGGEEEEEE----------SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-----TEEEEEE-
T ss_pred cccceeEEcCC--------CCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCC----CcEEeee-
Confidence 65 44331 12 22333444578877753322 233577777761 2222111
Q ss_pred CCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecc
Q psy1098 190 GGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQ 241 (390)
Q Consensus 190 ~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~ 241 (390)
.+|. .+.......+...+.-.|.+.+.. .-..++.||+.+++.+.++
T Consensus 366 -~~p~--~g~v~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 366 -PLPE--AGSVSGVSGDFDSDELRFSYSSFT--TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -ESSS--SSEEEEEES-TT-SEEEEEEEETT--EEEEEEEEETTTTCEEEEE
T ss_pred -cCCc--ceEEeccCCCCCCCEEEEEEeCCC--CCCEEEEEECCCCCEEEEE
Confidence 1222 221111221122233333444432 1257999999999877653
No 153
>KOG0289|consensus
Probab=36.41 E-value=3.9e+02 Score=25.54 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=34.8
Q ss_pred cEEEEecCCCeEeecccCCCCCCCCceeeEEEE--CCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeec
Q psy1098 226 DLFMLDINSMTWQKPQILGPQPLPRSLHTACVI--GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDL 303 (390)
Q Consensus 226 ~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v 303 (390)
.|..+|+....=-+ .-..+..- ......+ .++.++++|. .-.+|+|+..+..|+++
T Consensus 412 ~V~lwDLRKl~n~k---t~~l~~~~-~v~s~~fD~SGt~L~~~g~------------------~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFK---TIQLDEKK-EVNSLSFDQSGTYLGIAGS------------------DLQVYICKKKTKSWTEI 469 (506)
T ss_pred eEEEEEehhhcccc---eeeccccc-cceeEEEcCCCCeEEeecc------------------eeEEEEEecccccceee
Confidence 38888887554111 11111111 2223333 3677788775 35788999999999999
Q ss_pred cc
Q psy1098 304 SV 305 (390)
Q Consensus 304 ~~ 305 (390)
..
T Consensus 470 ~~ 471 (506)
T KOG0289|consen 470 KE 471 (506)
T ss_pred eh
Confidence 86
No 154
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=36.14 E-value=3.3e+02 Score=24.65 Aligned_cols=68 Identities=7% Similarity=0.086 Sum_probs=32.3
Q ss_pred EEEEEccCCCCcccceEEEECCC-CcEEeeeecCCCCCCCceeeEEE--eCCEEEEEcceeCCceeecceEEEEcC-cce
Q psy1098 39 LMLVFGGGNEGIVEELHVFNTAT-NQWFIPTLKGDIPPGCAAYGIVV--DNTRVLIFGGMVEYGKYSSDLYELQAS-KWE 114 (390)
Q Consensus 39 ~iyv~GG~~~~~~~~~~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~~d~~-~~~ 114 (390)
.+|+..+. .+.+..||..+ .+++.+.. .+.....+.++. .++.||+.+. . ...+..|+.. ..+
T Consensus 3 ~~y~~~~~----~~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~g~ 69 (330)
T PRK11028 3 IVYIASPE----SQQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIADDGA 69 (330)
T ss_pred EEEEEcCC----CCCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECCCCc
Confidence 46666543 25577888753 56655542 222112222222 2445666433 1 1446666665 334
Q ss_pred eEEec
Q psy1098 115 WKRLK 119 (390)
Q Consensus 115 W~~~~ 119 (390)
+..+.
T Consensus 70 l~~~~ 74 (330)
T PRK11028 70 LTFAA 74 (330)
T ss_pred eEEee
Confidence 54433
No 155
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.62 E-value=3.4e+02 Score=24.62 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCccee-
Q psy1098 37 KDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEW- 115 (390)
Q Consensus 37 ~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W- 115 (390)
++.+++.=+... ..--+|..|.++..-+.+. ..|.. ..+...+..+|- ......-.+.+.++|+.+.+|
T Consensus 117 ~D~LLlAR~DGh-~nLGvy~ldr~~g~~~~L~---~~ps~---KG~~~~D~a~F~---i~~~~~g~~~i~~~Dli~~~~~ 186 (339)
T PF09910_consen 117 EDRLLLARADGH-ANLGVYSLDRRTGKAEKLS---SNPSL---KGTLVHDYACFG---INNFHKGVSGIHCLDLISGKWV 186 (339)
T ss_pred cCEEEEEecCCc-ceeeeEEEcccCCceeecc---CCCCc---CceEeeeeEEEe---ccccccCCceEEEEEccCCeEE
Confidence 455666544222 3445788888888877766 23322 112222222221 121222246799999999999
Q ss_pred -EEecCCCCCCCCCCCCCccceEEEECCEEEEE
Q psy1098 116 -KRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLF 147 (390)
Q Consensus 116 -~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 147 (390)
+..+...+..+.....|....++...+++|.|
T Consensus 187 ~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 187 IESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 55554433334444455555677777777765
No 156
>PRK00178 tolB translocation protein TolB; Provisional
Probab=35.57 E-value=4e+02 Score=25.36 Aligned_cols=148 Identities=9% Similarity=0.055 Sum_probs=71.5
Q ss_pred cceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEEC-CEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCcee
Q psy1098 103 SDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIG-NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTT 181 (390)
Q Consensus 103 ~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 181 (390)
..+|++|+.+.+-+.+.... .........-+ ++|++..-..+ ..+++.+|+.+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~--------g~~~~~~~SpDG~~la~~~~~~g--------------~~~Iy~~d~~~~--- 277 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE--------GLNGAPAWSPDGSKLAFVLSKDG--------------NPEIYVMDLASR--- 277 (430)
T ss_pred CEEEEEECCCCCEEEccCCC--------CCcCCeEECCCCCEEEEEEccCC--------------CceEEEEECCCC---
Confidence 46999999887766654321 11111111223 44544322111 135888888763
Q ss_pred eeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECC-
Q psy1098 182 VWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGD- 260 (390)
Q Consensus 182 ~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~- 260 (390)
....+... +. ........++ +.+|++.....+ ...++.+|+.+.+++++...+ .........-++
T Consensus 278 ~~~~lt~~---~~--~~~~~~~spD---g~~i~f~s~~~g--~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~ 343 (430)
T PRK00178 278 QLSRVTNH---PA--IDTEPFWGKD---GRTLYFTSDRGG--KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGK 343 (430)
T ss_pred CeEEcccC---CC--CcCCeEECCC---CCEEEEEECCCC--CceEEEEECCCCCEEEeecCC----CCccceEECCCCC
Confidence 33433211 10 1111222221 345555432222 257999999888887754211 111111122234
Q ss_pred EEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 261 RMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 261 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
.|++...... ...++++|+.+...+.+..
T Consensus 344 ~i~~~~~~~~----------------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 344 TLVMVHRQDG----------------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEEEEccCC----------------ceEEEEEECCCCCEEEccC
Confidence 4444432110 2368999999988777754
No 157
>KOG0308|consensus
Probab=34.74 E-value=5e+02 Score=26.27 Aligned_cols=72 Identities=19% Similarity=0.399 Sum_probs=41.1
Q ss_pred CCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCce---eeeeccccCCCCC-CCCceeeeEEeeccCCCcEEEEE
Q psy1098 141 GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHT---TVWDMPGTYGGLP-SPRESHTACSWTDEYKNTKLIIY 216 (390)
Q Consensus 141 ~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~W~~~~~~~~~p-~~r~~~~~~~~~~~~~~~~i~v~ 216 (390)
++.+++-||.+.. ++.+|+.+... .+...+.. .+++ .++..--+.+.+ ..+.+++.
T Consensus 129 ~~~lvaSgGLD~~----------------IflWDin~~~~~l~~s~n~~t~-~sl~sG~k~siYSLA~N---~t~t~ivs 188 (735)
T KOG0308|consen 129 NNELVASGGLDRK----------------IFLWDINTGTATLVASFNNVTV-NSLGSGPKDSIYSLAMN---QTGTIIVS 188 (735)
T ss_pred CceeEEecCCCcc----------------EEEEEccCcchhhhhhcccccc-ccCCCCCccceeeeecC---CcceEEEe
Confidence 5778888998764 67777765421 12232222 2222 333222222221 15678888
Q ss_pred cCCCCCccCcEEEEecCCCe
Q psy1098 217 GGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 217 GG~~~~~~~~v~~~d~~~~~ 236 (390)
||.. +++..||+.+..
T Consensus 189 Ggte----k~lr~wDprt~~ 204 (735)
T KOG0308|consen 189 GGTE----KDLRLWDPRTCK 204 (735)
T ss_pred cCcc----cceEEecccccc
Confidence 9886 678899998754
No 158
>KOG0306|consensus
Probab=34.24 E-value=5.4e+02 Score=26.57 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEee
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQK 239 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~ 239 (390)
+++++.+|=.+ +++.+|-+++.++.-
T Consensus 519 dgk~LaVsLLd----nTVkVyflDtlKFfl 544 (888)
T KOG0306|consen 519 DGKLLAVSLLD----NTVKVYFLDTLKFFL 544 (888)
T ss_pred CCcEEEEEecc----CeEEEEEecceeeee
Confidence 78888887655 567777666666543
No 159
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=34.14 E-value=3.3e+02 Score=24.09 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=37.2
Q ss_pred ceeeeEEeCCEEEEEccC---CCCcccceEEEE---CCCCcEEeeeecCCCCC-------CCceeeEEEeCCEEEEEcce
Q psy1098 29 HGHRAVAIKDLMLVFGGG---NEGIVEELHVFN---TATNQWFIPTLKGDIPP-------GCAAYGIVVDNTRVLIFGGM 95 (390)
Q Consensus 29 ~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~d---~~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~iyv~GG~ 95 (390)
...++.+++|.+|.+=-. .........+|| ...+.|+..... ..|. ...-|+++.+++.-|.+|=.
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyH 154 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYH 154 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEE
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEec
Confidence 355677899998877541 223344455665 368889765543 2333 35678889999888888755
Q ss_pred e
Q psy1098 96 V 96 (390)
Q Consensus 96 ~ 96 (390)
+
T Consensus 155 n 155 (367)
T PF12217_consen 155 N 155 (367)
T ss_dssp E
T ss_pred c
Confidence 4
No 160
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=33.53 E-value=2.1e+02 Score=22.49 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCe--EeecccCCCCCCCCceeeEEEE---CCEEEEEcCcccCCCccccccccccc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMT--WQKPQILGPQPLPRSLHTACVI---GDRMFIFGGWVPILKDESRSLHEKEW 284 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~---~~~i~i~GG~~~~~~~~~~~~~~~~~ 284 (390)
+..++++|-. +.+..||...+. +.+ +++..-....+..+ ...+.++||.
T Consensus 63 ~~D~LliGt~-----t~llaYDV~~N~d~Fyk-----e~~DGvn~i~~g~~~~~~~~l~ivGGn---------------- 116 (136)
T PF14781_consen 63 GRDCLLIGTQ-----TSLLAYDVENNSDLFYK-----EVPDGVNAIVIGKLGDIPSPLVIVGGN---------------- 116 (136)
T ss_pred CcCEEEEecc-----ceEEEEEcccCchhhhh-----hCccceeEEEEEecCCCCCcEEEECce----------------
Confidence 4557777754 679999998765 222 33333222222222 4679999994
Q ss_pred eecCceEEeecCCCe--eeec
Q psy1098 285 KCSNQLACLHLPEMT--WEDL 303 (390)
Q Consensus 285 ~~~~~~~~~d~~~~~--W~~v 303 (390)
..+.-||.+.++ |+..
T Consensus 117 ---csi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 117 ---CSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ---EEEEEeCCCCcEEEEEec
Confidence 577778876654 7643
No 161
>KOG4378|consensus
Probab=33.44 E-value=4.7e+02 Score=25.56 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=40.8
Q ss_pred CCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCC
Q psy1098 130 CPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYK 209 (390)
Q Consensus 130 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~ 209 (390)
.|..+-++...+..|++-=|++.. ++.||+.... .-..+. .+.|. +.+...+
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkk----------------i~~yD~~s~~--s~~~l~--y~~Pl-----stvaf~~--- 260 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKK----------------INIYDIRSQA--STDRLT--YSHPL-----STVAFSE--- 260 (673)
T ss_pred CCcCcceecCCccceEEEecccce----------------EEEeeccccc--ccceee--ecCCc-----ceeeecC---
Confidence 456676777778888887787754 7888887521 112221 12221 2222211
Q ss_pred CcEEEEEcCCCCCccCcEEEEecC
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDIN 233 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~ 233 (390)
++.+++.|-.. .+++.||+.
T Consensus 261 ~G~~L~aG~s~----G~~i~YD~R 280 (673)
T KOG4378|consen 261 CGTYLCAGNSK----GELIAYDMR 280 (673)
T ss_pred CceEEEeecCC----ceEEEEecc
Confidence 66666666443 357777765
No 162
>KOG0643|consensus
Probab=33.31 E-value=3.5e+02 Score=24.10 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccC
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPI 271 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~ 271 (390)
+...||.|-.+. ....+|..+.+-.+ .-....|....++..+.+.+++-||+...
T Consensus 201 d~T~FiT~s~Dt----takl~D~~tl~v~K---ty~te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 201 DRTYFITGSKDT----TAKLVDVRTLEVLK---TYTTERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred CcceEEecccCc----cceeeeccceeeEE---EeeecccccceecccccceEEecCCceee
Confidence 667777776653 33455555544443 22233444555666678999999998654
No 163
>KOG1523|consensus
Probab=32.62 E-value=3.9e+02 Score=24.43 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCe-EeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecC
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMT-WQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSN 288 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 288 (390)
+...+.++-. .+++.+|.....+ |+.............+-.-....++|.-.+ . -+
T Consensus 21 drt~iAv~~~----~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs-~------------------dr 77 (361)
T KOG1523|consen 21 DRTQIAVSPN----NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS-H------------------DR 77 (361)
T ss_pred CCceEEeccC----CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc-C------------------CC
Confidence 4455555433 2689999998888 998543222211111111112235554432 2 23
Q ss_pred ceEEeec-CCCeeeecccccccCCCCCCCCCcceeee-----CCEEEEEecc
Q psy1098 289 QLACLHL-PEMTWEDLSVEVTDDFLPKPRAGHCASVI-----NSRMYIWSGR 334 (390)
Q Consensus 289 ~~~~~d~-~~~~W~~v~~~~~~~~~p~~r~~~~~~~~-----~~~l~v~GG~ 334 (390)
..|++.. +..+|..... ..|.+-++..+ ++|+.+-+|-
T Consensus 78 nayVw~~~~~~~Wkptlv--------LlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLV--------LLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred CccccccCCCCeecccee--------EEEeccceeeEeecCcCceEEeccCc
Confidence 5556665 7788987654 24444333333 4666665554
No 164
>PRK03629 tolB translocation protein TolB; Provisional
Probab=32.60 E-value=4.5e+02 Score=25.13 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=34.2
Q ss_pred cceEEEECCCCcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecC
Q psy1098 52 EELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKP 120 (390)
Q Consensus 52 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~ 120 (390)
..++++|..+++-+.+. ..+...........+.+|++...... ..++|.+|..+.+..++..
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC
Confidence 56888888777655554 22221112222233445655433211 1358999998887766653
No 165
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=32.60 E-value=5.1e+02 Score=25.73 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=52.8
Q ss_pred CCCCCCCCc--eeEEecCCCCCCC-C---CCCceeeeEEeCCEEEEEccCCCCcccceEEEECCCCc--EEeeeecCCCC
Q psy1098 3 KLSDDNCPV--YRWRRIDDPAGPQ-P---RPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQ--WFIPTLKGDIP 74 (390)
Q Consensus 3 ~~~~~~~~~--~~W~~~~~~~~~~-p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~~~~p 74 (390)
.|.++|..+ ..|+.-...+... + ........++.+++||+... ...++.+|..+++ |+.-.. ...
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-----dg~l~ALDa~TGk~~W~~~~~--~~~ 152 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-----DARLVALDAKTGKVVWSKKNG--DYK 152 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-----CCEEEEEECCCCCEEeecccc--ccc
Confidence 356667664 4788543211111 1 01112234556777776433 2468999998777 654221 111
Q ss_pred CC-CceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcc--eeEE
Q psy1098 75 PG-CAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKW--EWKR 117 (390)
Q Consensus 75 ~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~--~W~~ 117 (390)
.. ....+-++.++.||+-.... .......++.||.++. .|+.
T Consensus 153 ~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 153 AGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEec
Confidence 11 11222345677777642211 1112245788888766 4654
No 166
>PRK02889 tolB translocation protein TolB; Provisional
Probab=32.46 E-value=4.5e+02 Score=25.08 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=32.3
Q ss_pred CcEEEEecCCCeEeecccCCCCCCCCceee-EEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeec
Q psy1098 225 SDLFMLDINSMTWQKPQILGPQPLPRSLHT-ACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDL 303 (390)
Q Consensus 225 ~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v 303 (390)
..+|.++..+...+.+...+ ..... ...-+++.+++...... ...++++|+.+.+.+.+
T Consensus 308 ~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g---------------~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 308 PQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG---------------AFKLYVQDLATGQVTAL 367 (427)
T ss_pred cEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---------------cEEEEEEECCCCCeEEc
Confidence 46888888877776653211 11111 12224443333322110 23788999988877766
Q ss_pred cc
Q psy1098 304 SV 305 (390)
Q Consensus 304 ~~ 305 (390)
..
T Consensus 368 t~ 369 (427)
T PRK02889 368 TD 369 (427)
T ss_pred cC
Confidence 43
No 167
>KOG0308|consensus
Probab=29.79 E-value=2e+02 Score=28.84 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=40.9
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEe------ecccCCCCC-CCC-ceeeEEEEC-CEEEEEcCcccCCCccccccc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQ------KPQILGPQP-LPR-SLHTACVIG-DRMFIFGGWVPILKDESRSLH 280 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~------~~~~~~~~p-~~r-~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~ 280 (390)
++.+++.||.+ ..|++||+++..=+ .+. ...++ .++ .-++.+..+ +.+++-||.
T Consensus 129 ~~~lvaSgGLD----~~IflWDin~~~~~l~~s~n~~t-~~sl~sG~k~siYSLA~N~t~t~ivsGgt------------ 191 (735)
T KOG0308|consen 129 NNELVASGGLD----RKIFLWDINTGTATLVASFNNVT-VNSLGSGPKDSIYSLAMNQTGTIIVSGGT------------ 191 (735)
T ss_pred CceeEEecCCC----ccEEEEEccCcchhhhhhccccc-cccCCCCCccceeeeecCCcceEEEecCc------------
Confidence 78889999987 56888888865321 111 12222 233 233444443 468888886
Q ss_pred cccceecCceEEeecCCCe
Q psy1098 281 EKEWKCSNQLACLHLPEMT 299 (390)
Q Consensus 281 ~~~~~~~~~~~~~d~~~~~ 299 (390)
...+-+||+.+..
T Consensus 192 ------ek~lr~wDprt~~ 204 (735)
T KOG0308|consen 192 ------EKDLRLWDPRTCK 204 (735)
T ss_pred ------ccceEEecccccc
Confidence 4677788887654
No 168
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=28.77 E-value=3.5e+02 Score=22.65 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=41.5
Q ss_pred cccceEEEECCCCcEEeeeecCCC--CCCCceeeEEEeCCE-EEEEcceeCCceee--cceEEEEcCcceeEEecC
Q psy1098 50 IVEELHVFNTATNQWFIPTLKGDI--PPGCAAYGIVVDNTR-VLIFGGMVEYGKYS--SDLYELQASKWEWKRLKP 120 (390)
Q Consensus 50 ~~~~~~~~d~~~~~W~~~~~~~~~--p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~--~~v~~~d~~~~~W~~~~~ 120 (390)
..-.+|++|..++.|..+...... -.|. ...-..+.. ++++|-. .+.++ -.+|+|++.+..-+.+.+
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a--~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYA--HGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccc--cceEccCCeEEEEEccCCceeEeee
Confidence 457899999999999776543221 1222 333344444 4555522 22222 369999999998877765
No 169
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=28.24 E-value=1.4e+02 Score=27.62 Aligned_cols=102 Identities=10% Similarity=0.130 Sum_probs=55.9
Q ss_pred CcEEEEEc-----CCCCCccCcEEEEecCCCeEeecccCCCCCCC-Cce------eeEEEECCE-EEEEcCcccCCCccc
Q psy1098 210 NTKLIIYG-----GMSGNRLSDLFMLDINSMTWQKPQILGPQPLP-RSL------HTACVIGDR-MFIFGGWVPILKDES 276 (390)
Q Consensus 210 ~~~i~v~G-----G~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~-r~~------~~~~~~~~~-i~i~GG~~~~~~~~~ 276 (390)
+..+|+.. |..|.+.+-|.+||..+.+-+... .+|.. |.. ......+++ +||+- . .
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI---~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-~--T----- 115 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI---EIPPKPRAQVVPYKNMFALSADGKFLYVQN-F--T----- 115 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE---EETTS-B--BS--GGGEEE-TTSSEEEEEE-E--S-----
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceE---ecCCcchheecccccceEEccCCcEEEEEc-c--C-----
Confidence 66677655 334556788999999998543311 23332 432 122222454 44442 1 1
Q ss_pred cccccccceecCceEEeecCCCee-eecccccccCCCCCCCCCcceeeeCCEEEEE
Q psy1098 277 RSLHEKEWKCSNQLACLHLPEMTW-EDLSVEVTDDFLPKPRAGHCASVINSRMYIW 331 (390)
Q Consensus 277 ~~~~~~~~~~~~~~~~~d~~~~~W-~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 331 (390)
...++-+.|++.++. .+++.++...-.|.+-.++++..-+|+|.-+
T Consensus 116 ---------Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 116 ---------PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp ---------SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred ---------CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEE
Confidence 256888999988775 4455554443355543456666666665554
No 170
>KOG0315|consensus
Probab=27.61 E-value=4.3e+02 Score=23.33 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCce-eeEEEE-CCEEEEEcCcccCCCccccccccccceec
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSL-HTACVI-GDRMFIFGGWVPILKDESRSLHEKEWKCS 287 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 287 (390)
++.=++.|-.+ ..|+++|+.++..+.. .+|.+-.. -++.+. ++++++.+-. .
T Consensus 135 nQteLis~dqs----g~irvWDl~~~~c~~~----liPe~~~~i~sl~v~~dgsml~a~nn------------------k 188 (311)
T KOG0315|consen 135 NQTELISGDQS----GNIRVWDLGENSCTHE----LIPEDDTSIQSLTVMPDGSMLAAANN------------------K 188 (311)
T ss_pred CcceEEeecCC----CcEEEEEccCCccccc----cCCCCCcceeeEEEcCCCcEEEEecC------------------C
Confidence 44445555444 4699999999887763 33443322 233333 5666555432 4
Q ss_pred CceEEeecCCCee-eecccccccCCCCCCCCCccee-ee--CCEEEEEeccCCc
Q psy1098 288 NQLACLHLPEMTW-EDLSVEVTDDFLPKPRAGHCAS-VI--NSRMYIWSGRDDY 337 (390)
Q Consensus 288 ~~~~~~d~~~~~W-~~v~~~~~~~~~p~~r~~~~~~-~~--~~~l~v~GG~~~~ 337 (390)
..+|++++-+..- +.+.+.. --+++.+|..- .+ ++|.+..-+.+..
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~----k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVH----KFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ccEEEEEccCCCccccceEhh----heecccceEEEEEECCCCcEEEeecCCce
Confidence 5777777766432 2222210 11244444432 22 6777777777644
No 171
>PRK04043 tolB translocation protein TolB; Provisional
Probab=26.59 E-value=5.7e+02 Score=24.43 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=78.2
Q ss_pred cceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEEC-CEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCcee
Q psy1098 103 SDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIG-NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTT 181 (390)
Q Consensus 103 ~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 181 (390)
.++|.+|+.+.+=+++...+ .........-+ .++++.-.... ..++|.+++.+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~--------g~~~~~~~SPDG~~la~~~~~~g--------------~~~Iy~~dl~~g--- 267 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ--------GMLVVSDVSKDGSKLLLTMAPKG--------------QPDIYLYDTNTK--- 267 (419)
T ss_pred CEEEEEECCCCcEEEEecCC--------CcEEeeEECCCCCEEEEEEccCC--------------CcEEEEEECCCC---
Confidence 47999999887656665321 11111112223 45554433221 236899998763
Q ss_pred eeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCE
Q psy1098 182 VWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDR 261 (390)
Q Consensus 182 ~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 261 (390)
.++.+... +. ........|+ +.+|++.....+ ...|+++|+.+.+.+++...+. ... ...-+++
T Consensus 268 ~~~~LT~~---~~--~d~~p~~SPD---G~~I~F~Sdr~g--~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~ 331 (419)
T PRK04043 268 TLTQITNY---PG--IDVNGNFVED---DKRIVFVSDRLG--YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKN 331 (419)
T ss_pred cEEEcccC---CC--ccCccEECCC---CCEEEEEECCCC--CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCC
Confidence 45554321 11 1112223332 456666654322 2579999999988877543221 112 2223444
Q ss_pred EEEEcCcccCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 262 MFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 262 i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
.+++-......... ....+++++|+++..++.+..
T Consensus 332 ~Ia~~~~~~~~~~~---------~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 332 YIVYSSRETNNEFG---------KNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred EEEEEEcCCCcccC---------CCCcEEEEEECCCCCeEECCC
Confidence 33333221111000 003589999999999888765
No 172
>KOG0268|consensus
Probab=26.49 E-value=3.1e+02 Score=25.52 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=35.9
Q ss_pred eeeeEEee-ccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEE--CCEEEEEcCcc
Q psy1098 198 SHTACSWT-DEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI--GDRMFIFGGWV 269 (390)
Q Consensus 198 ~~~~~~~~-~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~i~i~GG~~ 269 (390)
+|..++.. +....|+=++.|+++ ..|-+|.....+-..+. -..|..|..++. -+.=||+.|.+
T Consensus 270 dhvsAV~dVdfsptG~EfvsgsyD----ksIRIf~~~~~~SRdiY-----htkRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSYD----KSIRIFPVNHGHSRDIY-----HTKRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred ccceeEEEeccCCCcchhcccccc----ceEEEeecCCCcchhhh-----hHhhhheeeEEEEeccccEEEecCC
Confidence 34444432 344477888888886 56777876655444422 124555555543 35556776754
No 173
>KOG0281|consensus
Probab=24.88 E-value=5.6e+02 Score=23.75 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=30.6
Q ss_pred CceEEeecCCCeeeecccccccCCCCCCCCCcceeeeCCEEEEEeccCCc
Q psy1098 288 NQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDY 337 (390)
Q Consensus 288 ~~~~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 337 (390)
..+-.+++.+.+..+. +..-+.|-+|.-+.++++|-|-.+..
T Consensus 340 RTikvW~~st~efvRt--------l~gHkRGIAClQYr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRT--------LNGHKRGIACLQYRDRLVVSGSSDNT 381 (499)
T ss_pred ceEEEEeccceeeehh--------hhcccccceehhccCeEEEecCCCce
Confidence 4566777777765543 44567788999999999998887644
No 174
>KOG1332|consensus
Probab=24.69 E-value=4.9e+02 Score=22.95 Aligned_cols=50 Identities=20% Similarity=0.437 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCccCcEEEEecCCCeEeecc-------------cCCCCCCCCceeeEEEECCEEEEE
Q psy1098 212 KLIIYGGMSGNRLSDLFMLDINSMTWQKPQ-------------ILGPQPLPRSLHTACVIGDRMFIF 265 (390)
Q Consensus 212 ~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~-------------~~~~~p~~r~~~~~~~~~~~i~i~ 265 (390)
+=++.||++.. -.||.| ..++|.... -.+....++...+.+.-+++++|+
T Consensus 176 krlvSgGcDn~--VkiW~~--~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 176 KRLVSGGCDNL--VKIWKF--DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ceeeccCCccc--eeeeec--CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 45788998732 234555 444665422 112223455555555556666655
No 175
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=24.43 E-value=3.7e+02 Score=21.52 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=45.8
Q ss_pred EEeCCEEEEEcceeCCceeecceEEEEcCccee-EEecCCCCCCCCCCCCCccceEEEE-CCEEEEEcCccCCCCCCCCC
Q psy1098 83 VVDNTRVLIFGGMVEYGKYSSDLYELQASKWEW-KRLKPKPPRFGSPPCPRLGHSFTLI-GNKVYLFGGLANSGGDETKP 160 (390)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W-~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~ 160 (390)
+.+++.+|-++-....... .-+..||..+.++ ..++ .|... ........+..+ +++|-++--...
T Consensus 2 V~vnG~~hW~~~~~~~~~~-~~IlsFDl~~E~F~~~~~-lP~~~---~~~~~~~~L~~v~~~~L~~~~~~~~-------- 68 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEK-DFILSFDLSTEKFGRSLP-LPFCN---DDDDDSVSLSVVRGDCLCVLYQCDE-------- 68 (164)
T ss_pred EEECCEEEeeEEecCCCCc-eEEEEEeccccccCCEEC-CCCcc---CccCCEEEEEEecCCEEEEEEeccC--------
Confidence 4567788877765432221 1588999999999 4443 22110 001112222223 567776632111
Q ss_pred CCccccccceeeeecCCCceeeeecccc
Q psy1098 161 TPSYKYLDDFYTLELKSGHTTVWDMPGT 188 (390)
Q Consensus 161 ~~~~~~~~~~~~~d~~~~~~~~W~~~~~ 188 (390)
...-++|..+-......+|+++-.
T Consensus 69 ----~~~~~IWvm~~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 69 ----TSKIEIWVMKKYGYGKESWTKLFT 92 (164)
T ss_pred ----CccEEEEEEeeeccCcceEEEEEE
Confidence 223467877643222367987543
No 176
>KOG1332|consensus
Probab=24.15 E-value=5e+02 Score=22.88 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=31.7
Q ss_pred EEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCC-Ceeeeccc
Q psy1098 229 MLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPE-MTWEDLSV 305 (390)
Q Consensus 229 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~W~~v~~ 305 (390)
.-+.+...|+.-. ....|.+....+-...++-+-|-|| .+++.++-... .+|.++..
T Consensus 239 t~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~G-------------------dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 TKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGG-------------------DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EecCccCcccccc-cccCCcceEEEEEeccccEEEEecC-------------------CcEEEEEEeCCCCcEEEccc
Confidence 3344567787622 2233444444444444566666666 35666666544 48998864
No 177
>KOG3545|consensus
Probab=24.11 E-value=4.9e+02 Score=22.82 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=83.7
Q ss_pred CCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCC------Cceeee
Q psy1098 128 PPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSP------RESHTA 201 (390)
Q Consensus 128 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~------r~~~~~ 201 (390)
+|.+-.+..-++.++.+|.-.+.+. .+.+||+.+.....+..++..+-...- ....-.
T Consensus 64 lp~~~~gTg~VVynGs~yynk~~t~----------------~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~ 127 (249)
T KOG3545|consen 64 LPYSWDGTGHVVYNGSLYYNKAGTR----------------NIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDL 127 (249)
T ss_pred CCCCccccceEEEcceEEeeccCCc----------------ceEEEEeecceeeeeeeccccccCCCcccccCCCccccc
Confidence 3456666667777888877553322 378888887444456654433322211 111112
Q ss_pred EEeeccCCCcEEEEEcCCCCC-ccCcEEEEecCC----CeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccc
Q psy1098 202 CSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINS----MTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDES 276 (390)
Q Consensus 202 ~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~ 276 (390)
++. +.-++++=-..++ ..-.+-++|+.+ .+|.. ..+ +|....+.++-+.+|++-.....
T Consensus 128 avD-----E~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T-----~~~-k~~~~~aF~iCGvLY~v~S~~~~----- 191 (249)
T KOG3545|consen 128 AVD-----ENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT-----TLP-KRSAGNAFMICGVLYVVHSYNCT----- 191 (249)
T ss_pred eec-----ccceeEEecccccCCcEEeeccCHHHhheeeeecc-----ccC-CCCcCceEEEeeeeEEEeccccC-----
Confidence 222 4445555432222 222245677743 34533 222 34445666777888888654322
Q ss_pred cccccccceecCce-EEeecCCCeeeecccccccCCCCCCCCCcceeee---CCEEEEE
Q psy1098 277 RSLHEKEWKCSNQL-ACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI---NSRMYIW 331 (390)
Q Consensus 277 ~~~~~~~~~~~~~~-~~~d~~~~~W~~v~~~~~~~~~p~~r~~~~~~~~---~~~l~v~ 331 (390)
...+ +.||..+++=+.+..+ ++.+-..++++.. +.+||++
T Consensus 192 ----------~~~i~yaydt~~~~~~~~~ip-----f~N~y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 192 ----------HTQISYAYDTTTGTQERIDLP-----FPNPYSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred ----------CceEEEEEEcCCCceeccccc-----ccchhhhhhccCCCcccceeeEe
Confidence 1223 6899988876666542 4444455666655 4678886
No 178
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.91 E-value=6.3e+02 Score=23.64 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=85.0
Q ss_pred eeeEEe---CCEEEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceeeEE-EeCCEEEEEcceeCCceeecceE
Q psy1098 31 HRAVAI---KDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIV-VDNTRVLIFGGMVEYGKYSSDLY 106 (390)
Q Consensus 31 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~ 106 (390)
|..... +.++|+.+. + ..+..+|+.+.+-.. ..+.......++ +.+++.++.+... .+.+-
T Consensus 39 h~~~~~s~Dgr~~yv~~r-d----g~vsviD~~~~~~v~-----~i~~G~~~~~i~~s~DG~~~~v~n~~-----~~~v~ 103 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-D----GTVSVIDLATGKVVA-----TIKVGGNPRGIAVSPDGKYVYVANYE-----PGTVS 103 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-T----SEEEEEETTSSSEEE-----EEE-SSEEEEEEE--TTTEEEEEEEE-----TTEEE
T ss_pred eeEEEecCCCCEEEEEcC-C----CeEEEEECCcccEEE-----EEecCCCcceEEEcCCCCEEEEEecC-----CCcee
Confidence 554433 356888753 2 358899998887322 122333333333 3344444444332 35677
Q ss_pred EEEcCcceeEEecCCCCCCCCCCCCCccceEEEECCEEEEEcCccCCCCCCCCCCCccccccceeeeecCCCceeeeecc
Q psy1098 107 ELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMP 186 (390)
Q Consensus 107 ~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~ 186 (390)
++|..+.+=.+.-+........+.+|...-.....+..|++-=.+. ..++.+|..+.. +....
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~---------------~~I~vVdy~d~~-~~~~~- 166 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT---------------GEIWVVDYSDPK-NLKVT- 166 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT---------------TEEEEEETTTSS-CEEEE-
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC---------------CeEEEEEecccc-cccee-
Confidence 8998776433221111000111233432222223444454433222 247777766532 11111
Q ss_pred ccCCCCCCCCceeeeEEeeccCCCcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEEC-CEEEEE
Q psy1098 187 GTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIG-DRMFIF 265 (390)
Q Consensus 187 ~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~i~i~ 265 (390)
.+...+.-|-....+ +++.|+.+-. ..+.+-+.|.++.+-..+...+..|.+.....+...+ +.++..
T Consensus 167 ----~i~~g~~~~D~~~dp----dgry~~va~~---~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 167 ----TIKVGRFPHDGGFDP----DGRYFLVAAN---GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp ----EEE--TTEEEEEE-T----TSSEEEEEEG---GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred ----eecccccccccccCc----ccceeeeccc---ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence 123344455555543 4444444321 1257888888887655533344455444444433333 345555
Q ss_pred cCc
Q psy1098 266 GGW 268 (390)
Q Consensus 266 GG~ 268 (390)
+|.
T Consensus 236 ~~~ 238 (369)
T PF02239_consen 236 SGL 238 (369)
T ss_dssp EBS
T ss_pred ccc
Confidence 543
No 179
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.38 E-value=6.7e+02 Score=23.73 Aligned_cols=272 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCCCCceeEEecCCCCCCCCCCCceeeeEEeCCE--EEEEccCCCCcccceEEEECCCCcEEeeeecCCCCCCCceee
Q psy1098 4 LSDDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDL--MLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYG 81 (390)
Q Consensus 4 ~~~~~~~~~~W~~~~~~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~ 81 (390)
|...|..+++=++|+ ..+..-....++.-.+. +|+-.+ ..+...|+.+.+-+.+. ..|..-.+..
T Consensus 62 ly~lDL~t~~i~QLT----dg~g~~~~g~~~s~~~~~~~Yv~~~------~~l~~vdL~T~e~~~vy---~~p~~~~g~g 128 (386)
T PF14583_consen 62 LYLLDLATGEITQLT----DGPGDNTFGGFLSPDDRALYYVKNG------RSLRRVDLDTLEERVVY---EVPDDWKGYG 128 (386)
T ss_dssp EEEEETTT-EEEE-------SS-B-TTT-EE-TTSSEEEEEETT------TEEEEEETTT--EEEEE---E--TTEEEEE
T ss_pred eEEEEcccCEEEECc----cCCCCCccceEEecCCCeEEEEECC------CeEEEEECCcCcEEEEE---ECCccccccc
Q ss_pred EEEeCCEEEEEcceeCCc------------------eeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEE-CC
Q psy1098 82 IVVDNTRVLIFGGMVEYG------------------KYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI-GN 142 (390)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~------------------~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~-~~ 142 (390)
..+.+..--.+.|..... +....+...|+.+.+...+-.. ..=.+|-...- +.
T Consensus 129 t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~--------~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 129 TWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED--------TDWLGHVQFSPTDP 200 (386)
T ss_dssp EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--------SS-EEEEEEETTEE
T ss_pred ceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--------CccccCcccCCCCC
Q ss_pred EEEEE---cCccCCCCCCCCCCCccccccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEeeccCCCcEEEEEcCC
Q psy1098 143 KVYLF---GGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGM 219 (390)
Q Consensus 143 ~l~v~---GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~~~~i~v~GG~ 219 (390)
.+++| |... .....||.++... ++.|.. ....+.-..+|---.. .+.+|+..+..
T Consensus 201 ~li~fCHEGpw~-------------~Vd~RiW~i~~dg--~~~~~v---~~~~~~e~~gHEfw~~----DG~~i~y~~~~ 258 (386)
T PF14583_consen 201 TLIMFCHEGPWD-------------LVDQRIWTINTDG--SNVKKV---HRRMEGESVGHEFWVP----DGSTIWYDSYT 258 (386)
T ss_dssp EEEEEEE-S-TT-------------TSS-SEEEEETTS-----EES---S---TTEEEEEEEE-T----TSS-EEEEEEE
T ss_pred CEEEEeccCCcc-------------eeceEEEEEEcCC--Ccceee---ecCCCCcccccccccC----CCCEEEEEeec
Q ss_pred CCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCe
Q psy1098 220 SGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT 299 (390)
Q Consensus 220 ~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 299 (390)
.+..-.-+..+|+.+..=+. .++.|++.|-....++++++--| ...+.............-.-+++++++...
T Consensus 259 ~~~~~~~i~~~d~~t~~~~~-----~~~~p~~~H~~ss~Dg~L~vGDG--~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTGERRR-----LMEMPWCSHFMSSPDGKLFVGDG--GDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp TTT--EEEEEE-TTT--EEE-----EEEE-SEEEEEE-TTSSEEEEEE---------------------EEEEEETTTTE
T ss_pred CCCCceEEEeeCCCCCCceE-----EEeCCceeeeEEcCCCCEEEecC--CCCCccccccccceecCCcEEEEeccccCc
Q ss_pred ----------eeecccccccCCCCCCCCCcceeeeCCEEEEE
Q psy1098 300 ----------WEDLSVEVTDDFLPKPRAGHCASVINSRMYIW 331 (390)
Q Consensus 300 ----------W~~v~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 331 (390)
|..+.. -.....-|-...-+++-+||
T Consensus 332 ~~~l~~h~~sw~v~~~------~~q~~hPhp~FSPDgk~VlF 367 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDG------DRQVTHPHPSFSPDGKWVLF 367 (386)
T ss_dssp EEEEEE-------BTT------BSSTT----EE-TTSSEEEE
T ss_pred eeeeeeccCcceeecC------CCccCCCCCccCCCCCEEEE
No 180
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=22.22 E-value=5.1e+02 Score=25.42 Aligned_cols=66 Identities=17% Similarity=0.049 Sum_probs=40.1
Q ss_pred CccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeee
Q psy1098 222 NRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWE 301 (390)
Q Consensus 222 ~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~ 301 (390)
..++.++.+|+.++.=-. . ..-...++......++.+++++|+.+.. .-.+...|+.+..-.
T Consensus 372 ~~ls~LvllD~~tg~~l~---~-S~~~~Ir~r~~~~~~~~~vaI~g~~G~~--------------~ikLvlid~~tLev~ 433 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLK---R-SPVNGIRGRTFYEREDDLVAIAGCSGNA--------------AIKLVLIDPETLEVK 433 (489)
T ss_pred CcceeEEEEeCCCCceec---c-cccceeccceeEEcCCCEEEEeccCCch--------------heEEEecCcccceee
Confidence 346889999999864332 1 1222233345556788899999884432 234555677777755
Q ss_pred eccc
Q psy1098 302 DLSV 305 (390)
Q Consensus 302 ~v~~ 305 (390)
+-+.
T Consensus 434 kes~ 437 (489)
T PF05262_consen 434 KESE 437 (489)
T ss_pred eecc
Confidence 5444
No 181
>KOG0278|consensus
Probab=21.48 E-value=5.7e+02 Score=22.60 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=49.2
Q ss_pred cEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCceEEeecCCCeeeeccc
Q psy1098 226 DLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSV 305 (390)
Q Consensus 226 ~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~v~~ 305 (390)
.|..+|+.+..--+ .-.+|......+.-. +..+||.||. ...++.||-.+.. ++..
T Consensus 206 sV~Fwdaksf~~lK---s~k~P~nV~SASL~P-~k~~fVaGge------------------d~~~~kfDy~Tge--Ei~~ 261 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLK---SYKMPCNVESASLHP-KKEFFVAGGE------------------DFKVYKFDYNTGE--EIGS 261 (334)
T ss_pred eeEEecccccccee---eccCccccccccccC-CCceEEecCc------------------ceEEEEEeccCCc--eeee
Confidence 45555655543332 345555443322222 3479999996 3467888877765 1221
Q ss_pred ccccCCCCCCCCCcc-eeee--CCEEEEEeccCCccccccceeeeCeeEEEEecC
Q psy1098 306 EVTDDFLPKPRAGHC-ASVI--NSRMYIWSGRDDYKKAWNNQVCCKDLWYLEVEK 357 (390)
Q Consensus 306 ~~~~~~~p~~r~~~~-~~~~--~~~l~v~GG~~~~~~~~~~~~~~~d~w~~~~~~ 357 (390)
.....++.. |+.+ ++-+|..|-.++. -.+|+.....
T Consensus 262 ------~nkgh~gpVhcVrFSPdGE~yAsGSEDGT----------irlWQt~~~~ 300 (334)
T KOG0278|consen 262 ------YNKGHFGPVHCVRFSPDGELYASGSEDGT----------IRLWQTTPGK 300 (334)
T ss_pred ------cccCCCCceEEEEECCCCceeeccCCCce----------EEEEEecCCC
Confidence 112222222 2222 6888888877765 3566665443
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=21.16 E-value=6.2e+02 Score=22.85 Aligned_cols=26 Identities=4% Similarity=-0.042 Sum_probs=14.9
Q ss_pred CcEEEEEcCCCCCccCcEEEEecC--CCeEee
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDIN--SMTWQK 239 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~--~~~W~~ 239 (390)
...+|+..... +.+.+|++. +.+.+.
T Consensus 186 g~~lyv~~~~~----~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 186 QQYAYCVNELN----SSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CCEEEEEecCC----CEEEEEEEeCCCCCEEE
Confidence 55677775432 567777765 344443
No 183
>KOG0266|consensus
Probab=21.14 E-value=7.6e+02 Score=23.86 Aligned_cols=66 Identities=8% Similarity=0.080 Sum_probs=40.0
Q ss_pred CcEEEEEcCCCCCccCcEEEEecCCCeEeecccCCCCCCCCceeeEEEECCEEEEEcCcccCCCccccccccccceecCc
Q psy1098 210 NTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQ 289 (390)
Q Consensus 210 ~~~i~v~GG~~~~~~~~v~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
.+++++.|+.+ ..+.++|+.+.+-.+.- ..-.......+..-++.+++.+.. -..
T Consensus 257 ~g~~i~Sgs~D----~tvriWd~~~~~~~~~l---~~hs~~is~~~f~~d~~~l~s~s~------------------d~~ 311 (456)
T KOG0266|consen 257 DGNLLVSGSDD----GTVRIWDVRTGECVRKL---KGHSDGISGLAFSPDGNLLVSASY------------------DGT 311 (456)
T ss_pred CCCEEEEecCC----CcEEEEeccCCeEEEee---eccCCceEEEEECCCCCEEEEcCC------------------Ccc
Confidence 56899999887 46889999885544421 111111112222236777777754 357
Q ss_pred eEEeecCCCee
Q psy1098 290 LACLHLPEMTW 300 (390)
Q Consensus 290 ~~~~d~~~~~W 300 (390)
+.+||+.+..-
T Consensus 312 i~vwd~~~~~~ 322 (456)
T KOG0266|consen 312 IRVWDLETGSK 322 (456)
T ss_pred EEEEECCCCce
Confidence 78898887774
No 184
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=20.89 E-value=7.1e+02 Score=23.46 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred CcEEeeeecCCCCCCCceeeEEEeCCEEEEEcceeCCceeecceEEEEcCcceeEEecCCCCCCCCCCCCCccceEEEEC
Q psy1098 62 NQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIG 141 (390)
Q Consensus 62 ~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~~~~~W~~~~~~~~~~~~~p~~r~~~~~~~~~ 141 (390)
+.|+.+. . ..-..-.++..++++|++ ...-.++.++ ..-.-.++.+.....-.....+.....+...
T Consensus 190 ~~Wt~l~---~--~~~~~~DIi~~kGkfYAv-------D~~G~l~~i~-~~l~i~~v~~~i~~~~~~g~~~~~~yLVEs~ 256 (373)
T PLN03215 190 NVLKALK---Q--MGYHFSDIIVHKGQTYAL-------DSIGIVYWIN-SDLEFSRFGTSLDENITDGCWTGDRRFVECC 256 (373)
T ss_pred CeeeEcc---C--CCceeeEEEEECCEEEEE-------cCCCeEEEEe-cCCceeeecceecccccCCcccCceeEEEEC
Q ss_pred CEEEEEcCccCCCCCCCCCCCccc--------------cccceeeeecCCCceeeeeccccCCCCCCCCceeeeEEee--
Q psy1098 142 NKVYLFGGLANSGGDETKPTPSYK--------------YLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWT-- 205 (390)
Q Consensus 142 ~~l~v~GG~~~~~~~~~~~~~~~~--------------~~~~~~~~d~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~-- 205 (390)
+.++++...... . ..-.++++|... .+|.++...+....-.....+...+
T Consensus 257 GdLLmV~R~~~~-----------~~~~~~~~~~~~~~t~~f~VfklD~~~---~~WveV~sLgd~aLFlG~~~s~sv~a~ 322 (373)
T PLN03215 257 GELYIVERLPKE-----------STWKRKADGFEYSRTVGFKVYKFDDEL---AKWMEVKTLGDNAFVMATDTCFSVLAH 322 (373)
T ss_pred CEEEEEEEEccC-----------cccccccccccccceeEEEEEEEcCCC---CcEEEecccCCeEEEEECCccEEEecC
Q ss_pred --ccCCCcEEEEEcCCCCCccCcEEEEecCCCe
Q psy1098 206 --DEYKNTKLIIYGGMSGNRLSDLFMLDINSMT 236 (390)
Q Consensus 206 --~~~~~~~i~v~GG~~~~~~~~v~~~d~~~~~ 236 (390)
.....+.||.... ...++|+++..+
T Consensus 323 e~pG~k~NcIYFtdd------~~~~v~~~~dg~ 349 (373)
T PLN03215 323 EFYGCLPNSIYFTED------TMPKVFKLDNGN 349 (373)
T ss_pred CCCCccCCEEEEECC------CcceEEECCCCC
Done!