RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1098
(390 letters)
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 80.8 bits (199), Expect = 6e-17
Identities = 91/307 (29%), Positives = 126/307 (41%), Gaps = 39/307 (12%)
Query: 14 WRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGG---NEGIVEELHVFNTATNQWFIPTLK 70
W +++ G P PR H + D + FGG NE I ++L+VF+ T+ W I
Sbjct: 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPAN 68
Query: 71 GDIPP-GCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPP 129
GD+P C +V T++ IFGG E ++S D Y K EW L K G P
Sbjct: 69 GDVPRISCLGVRMVAVGTKLYIFGGRDEKREFS-DFYSYDTVKNEWTFLT-KLDEEGGPE 126
Query: 130 CPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTY 189
R HS N VY+FGG++ GG P F T+E + + D G +
Sbjct: 127 A-RTFHSMASDENHVYVFGGVSK-GGLMKTPE-------RFRTIEAYN----IAD--GKW 171
Query: 190 GGLPSPRESHTACS-----------WTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQ 238
LP P E+ W Y I+ GG S + + D S W
Sbjct: 172 VQLPDPGENFEKRGGAGFAVVQGKIWV-VYGFATSILPGGKSDYESNAVQFFDPASGKWT 230
Query: 239 KPQILGPQPLPRSLHTACVIGDRMFIFGGWV-PILKDESRSLHEKEWKCSNQLACLHLPE 297
+ + G +P RS+ V+G + IFGG V P LK H SN+ L
Sbjct: 231 EVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKG-----HLGPGTLSNEGYALDTET 285
Query: 298 MTWEDLS 304
+ WE L
Sbjct: 286 LVWEKLG 292
Score = 40.0 bits (93), Expect = 0.002
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 114 EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLD-DFYT 172
W +++ K G P PR H ++G+K+Y FGG E KP +++D D Y
Sbjct: 8 GWIKVEQKG---GKGPGPRCSHGIAVVGDKLYSFGG-------ELKPN---EHIDKDLYV 54
Query: 173 LELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYK-NTKLIIYGGMSGNR-LSDLFML 230
+ +T W + G +P +C TKL I+GG R SD +
Sbjct: 55 FDF---NTHTWSIAPANGDVPR-----ISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSY 106
Query: 231 DINSMTWQKPQILGPQ--PLPRSLHTACVIGDRMFIFGG 267
D W L + P R+ H+ + +++FGG
Sbjct: 107 DTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGG 145
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 77.7 bits (191), Expect = 1e-15
Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 33/261 (12%)
Query: 13 RWRRIDDPA-GPQPRPRHGHRAVAIKDLMLVFGGG---NEGIVEELHVFNTATNQWFIPT 68
+W +++ GP R HG V K + FGG N+ I + L+VF+ T W I
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVGNK--IYSFGGEFTPNQPIDKHLYVFDLETRTWSISP 209
Query: 69 LKGDIPP-GCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGS 127
GD+P C +V + + +FGG +Y+ Y + EWK L P
Sbjct: 210 ATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNG-FYSFDTTTNEWKLLTP----VEE 264
Query: 128 PPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPG 187
P PR HS VY+FGG++ T K LD + ++ K H +
Sbjct: 265 GPTPRSFHSMAADEENVYVFGGVS--------ATARLKTLDSYNIVDKKWFHCS------ 310
Query: 188 TYGGLPSPRESHTACSWTD-EYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQ 246
+P +S + E K+ + G +G + D+ D W + + G +
Sbjct: 311 ------TPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVR 364
Query: 247 PLPRSLHTACVIGDRMFIFGG 267
P RS+ + +G + IFGG
Sbjct: 365 PSERSVFASAAVGKHIVIFGG 385
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 48.8 bits (117), Expect = 3e-08
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 210 NTKLIIYGGM--SGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVI 258
K+ ++GG+ G RL+DL++ D+++ TW+K LG P PR+ H A VI
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEK---LGDLPGPRAGHAATVI 48
Score = 44.2 bits (105), Expect = 2e-06
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 86 NTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI 140
++ +FGG+ + G +DL+ W++L G P PR GH+ T+I
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL-------GDLPGPRAGHAATVI 48
Score = 38.0 bits (89), Expect = 3e-04
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 16/63 (25%)
Query: 141 GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHT 200
G K+Y+FGGL L+D + +L T W+ G LP PR H
Sbjct: 1 GGKIYVFGGL----------GDGGTRLNDLWVYDLD---TNTWEKLGD---LPGPRAGHA 44
Query: 201 ACS 203
A
Sbjct: 45 ATV 47
Score = 31.1 bits (71), Expect = 0.073
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 37 KDLMLVFGG--GNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVD 85
+ VFGG + +L V++ TN W GD+P A + V
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48
Score = 26.1 bits (58), Expect = 4.3
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 259 GDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAG 318
G ++++FGG + N L L TWE L LP PRAG
Sbjct: 1 GGKIYVFGGL-----GDGG-------TRLNDLWVYDLDTNTWEKLGD------LPGPRAG 42
Query: 319 HCASVI 324
H A+VI
Sbjct: 43 HAATVI 48
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 50.2 bits (120), Expect = 1e-06
Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 45/243 (18%)
Query: 33 AVAIKDLMLVFGGGNEG--IVEELHVFNTATNQWF-IPTLKGDIPPGCAAYGIVVDNTRV 89
+V + +++ GG N+ V + ++T T W +P L G+ V N R+
Sbjct: 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP----RKNPGVTVFNNRI 345
Query: 90 LIFGGMVEYGKYSSDLYELQASKWEWKRLKP-KPPRFGSPPCPRLGHSFTLIGNKVYLFG 148
+ GG + + + + + +W+ P PR+ + N +Y+ G
Sbjct: 346 YVIGG-IYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--------VNNLIYVIG 396
Query: 149 GLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEY 208
G+ K + T+E S +T W G P P + C +
Sbjct: 397 GI-------------SKNDELLKTVECFSLNTNKWSK-----GSPLPISHYGGC--AIYH 436
Query: 209 KNTKLIIYGGMS----GNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFI 264
K+ + GG+S + + + + W L PR + C+ +++++
Sbjct: 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWT---ELSSLNFPRINASLCIFNNKIYV 492
Query: 265 FGG 267
GG
Sbjct: 493 VGG 495
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 39.6 bits (93), Expect = 8e-05
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 195 PRESHTACSWTDEYKNTKLIIYGGMSGN--RLSDLFMLDINSMTWQK 239
PR HT+ S D +L ++GG + + LSD+++ D+++ TW +
Sbjct: 1 PRAYHTSTSIGD----GRLYLFGGENEDGSVLSDVWVFDLSTNTWTR 43
Score = 36.9 bits (86), Expect = 7e-04
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 80 YGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPP 123
+ + R+ +FGG E G SD++ S W RL P
Sbjct: 6 TSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLPS 49
Score = 32.6 bits (75), Expect = 0.020
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 27 PRHGHRAVAIKD-LMLVFGG--GNEGIVEELHVFNTATNQW 64
PR H + +I D + +FGG + ++ ++ VF+ +TN W
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTW 41
Score = 31.1 bits (71), Expect = 0.081
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 131 PRLGHSFTLIG-NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVW-DMP 186
PR H+ T IG ++YLFGG G L D + +L + T +P
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDG----------SVLSDVWVFDLSTNTWTRLPSLP 48
Score = 28.0 bits (63), Expect = 0.99
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 249 PRSLHTACVIGD-RMFIFGG 267
PR+ HT+ IGD R+++FGG
Sbjct: 1 PRAYHTSTSIGDGRLYLFGG 20
>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase for which a structure has been solved.
The kelch motif forms a beta sheet. Several of these
sheets associate to form a beta propeller structure as
found in pfam00064, pfam00400 and pfam00415.
Length = 42
Score = 39.1 bits (92), Expect = 8e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 128 PPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSG 178
P PR H ++G ++YL+GG + G + DD Y L L
Sbjct: 1 LPVPRANHCAVVVGGEIYLYGGYTSGNG---------QSSDDVYVLSLPGF 42
Score = 33.4 bits (77), Expect = 0.011
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 312 LPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCCKDLWYLEV 355
LP PRA HCA V+ +Y++ G N Q D++ L +
Sbjct: 1 LPVPRANHCAVVVGGEIYLYGGYTSG----NGQS-SDDVYVLSL 39
Score = 32.6 bits (75), Expect = 0.021
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 73 IPPGCAAYGIVVDNTRVLIFGGMV-EYGKYSSDLYELQASKW 113
+P A + VV + ++GG G+ S D+Y L +
Sbjct: 1 LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPGF 42
Score = 32.2 bits (74), Expect = 0.030
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 247 PLPRSLHTACVIGDRMFIFGGWVPILKDESRSLH 280
P+PR+ H A V+G ++++GG+ S ++
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVY 35
Score = 31.8 bits (73), Expect = 0.034
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 25 PRPRHGHRAVAIKDLMLVFGG---GNEGIVEELHVFNTATN 62
P PR H AV + + ++GG GN ++++V +
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPGF 42
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 43.5 bits (103), Expect = 1e-04
Identities = 45/190 (23%), Positives = 68/190 (35%), Gaps = 47/190 (24%)
Query: 6 DDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGG----GNEG---IVEELHVFN 58
D N P W +I G PR A I + VFGG +EG + ++++ ++
Sbjct: 56 DLNAPSKGWTKIAAFPGG---PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYD 112
Query: 59 TATNQWFIPTLKGDIPPGCA-AYGIVVDNTRVLIFGGMVE--YGKYSSDLYELQASKWEW 115
TN W L P G A + + N + I GG+ + + Y DL K
Sbjct: 113 PKTNSW--QKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170
Query: 116 KRL-------KPKPPRFG------------------SPPCPRLGHSFTLIGNKVYLFGGL 150
++ KP+ F SP G + + GNK++L G
Sbjct: 171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING- 229
Query: 151 ANSGGDETKP 160
E KP
Sbjct: 230 ------EIKP 233
Score = 37.3 bits (87), Expect = 0.012
Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 30/195 (15%)
Query: 53 ELHVFNTATNQWFIPTLKGDIP-PGCAAYGIVVDNTRVLIFGGMVEYGKYSSD--LYELQ 109
E+ ++ +TNQW G+ P G A +V+ ++ + G ++ G + +
Sbjct: 190 EVLSYDPSTNQW---KNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFT 246
Query: 110 ASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTP------- 162
+ +W++L PP G + +F N V L G AN G
Sbjct: 247 GNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306
Query: 163 --SYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGG-- 218
+ D+ Y L W G LP + SW + +++ GG
Sbjct: 307 GLKKSWSDEIYAL-----VNGKWQ---KVGELPQGLAYGVSVSWNN-----GVLLIGGET 353
Query: 219 MSGNRLSDLFMLDIN 233
G +SD+ +L +
Sbjct: 354 AGGKAVSDVTLLSWD 368
Score = 28.4 bits (64), Expect = 6.0
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 18/67 (26%)
Query: 107 ELQASKWEWKRLK--PKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPS- 163
+L A W ++ P PR + I K+Y+FGG G ++ +P
Sbjct: 56 DLNAPSKGWTKIAAFPGGPREQA--------VAAFIDGKLYVFGG---IGKTNSEGSPQV 104
Query: 164 ----YKY 166
YKY
Sbjct: 105 FDDVYKY 111
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 43.3 bits (102), Expect = 2e-04
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 16 RIDDPA-----GPQPRPRHGHRAVAIKDLMLVFGGGNEG--IVEELHVFNTATNQWFIPT 68
+D G +P++ +V I D V GG +EG + + + + TN W P
Sbjct: 8 FVDHLENGYTNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPI 67
Query: 69 LKGDIPPGCAAY-GIVVDNTRVLIF 92
+ G P C Y +V++ R+L+
Sbjct: 68 VLGTGPKPCKGYSAVVLNKDRILVI 92
Score = 31.0 bits (70), Expect = 1.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 214 IIYGGMSGNRLS-DLFMLDINSMTWQKPQILGPQPLPRSLHTACVIG-DRMFIF 265
+I G GN LS + +LD + W P +LG P P ++A V+ DR+ +
Sbjct: 39 VIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVI 92
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 42.0 bits (99), Expect = 4e-04
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 14 WRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGG---GNEGIVEEL---HVFNTATNQWF-I 66
W +I D G R+ A I + VFGG + + ++ +TN W +
Sbjct: 72 WTKIADFPGG---ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKL 128
Query: 67 PTLKGDIPPGCA-AYGIVVDNTRVLIFGGMVEY--GKYSSDLYELQASKWEWKRLK 119
T P G A ++ T++ FGG+ + Y D+ K ++
Sbjct: 129 DTRS---PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181
Score = 31.6 bits (72), Expect = 0.70
Identities = 34/171 (19%), Positives = 49/171 (28%), Gaps = 34/171 (19%)
Query: 50 IVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQ 109
+ + Q P L G A + V + G Y DL +
Sbjct: 16 LAAFSALVAAYAGQL--PDLPVGFKNGAGA----LIGDTVYVGLGSAGTAFYVLDL-KKP 68
Query: 110 ASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDD 169
W P R + +IG K+Y+FGG G +P + +D
Sbjct: 69 GKGWTKIADFPGGARNQA--------VAAVIGGKLYVFGGY----GKSVSSSP--QVFND 114
Query: 170 FYTLELKSGHTTVWDMPGTYGGLPSPRES--HTACSWTDEYKNTKLIIYGG 218
Y T W T SP + S TK+ +GG
Sbjct: 115 AYRY---DPSTNSWHKLDTR----SPTGLVGASTFS----LNGTKIYFFGG 154
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 41.5 bits (98), Expect = 5e-04
Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 47/190 (24%)
Query: 6 DDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGG----GNEG---IVEELHVFN 58
D P W++I D G PR+ A AI + VFGG +EG + ++++ ++
Sbjct: 35 DLKKPSKGWQKIADFPGG---PRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYD 91
Query: 59 TATNQWFIPTLKGDIPPGCA-AYGIVVDNTRVLIFGGMVE--YGKYSSDLYELQASKWEW 115
N W L P G A G + N + GG+ + + Y +DL
Sbjct: 92 PKKNSW--QKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149
Query: 116 KRL-------KPKPPRFG------------------SPPCPRLGHSFTLIGNKVYLFGGL 150
+L P+ + +P G + GNK+ L G
Sbjct: 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLING- 208
Query: 151 ANSGGDETKP 160
E KP
Sbjct: 209 ------EIKP 212
Score = 38.1 bits (89), Expect = 0.006
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 53 ELHVFNTATNQWFIPTLKGDIP-PGCAAYGIVVDNTRVLIFGGMVEYGKYS--SDLYELQ 109
+ ++ +TNQW G+ P G A IV ++L+ G ++ G + Y
Sbjct: 169 NVLSYDPSTNQW---RNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFT 225
Query: 110 ASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLAN 152
K EW +L P PP S G F I N V L G AN
Sbjct: 226 GGKLEWNKLPPLPPPKSSSQEGLAGA-FAGISNGVLLVAGGAN 267
Score = 35.8 bits (83), Expect = 0.035
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 25/130 (19%)
Query: 107 ELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKY 166
+L+ W+++ F P PR I K+Y+FGG G ++ +P +
Sbjct: 35 DLKKPSKGWQKI----ADF--PGGPRNQAVAAAIDGKLYVFGG---IGKANSEGSP--QV 83
Query: 167 LDDFYTLELKSGHTTVWDMPGTYGGLPSPR--ESHTACSWTDEYKNTKLIIYGGMSGNRL 224
DD Y + K W T SP + S N + GG++ N +
Sbjct: 84 FDDVYRYDPK---KNSWQKLDT----RSPVGLLGASGFSL----HNGQAYFTGGVNKN-I 131
Query: 225 SDLFMLDINS 234
D + D+++
Sbjct: 132 FDGYFADLSA 141
Score = 31.9 bits (73), Expect = 0.60
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 210 NTKLIIYGGMSGNRLSDLFMLDINSMT--WQK-PQILGPQPLPRSLHTACVIGDRMFIFG 266
K+ + G +G + LD+ + WQK G PR+ A I ++++FG
Sbjct: 17 GDKVYVGLGSAGT---SWYKLDLKKPSKGWQKIADFPGG---PRNQAVAAAIDGKLYVFG 70
Query: 267 GWVPILKDESRSL 279
G I K S
Sbjct: 71 G---IGKANSEGS 80
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 35.3 bits (82), Expect = 0.003
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 27 PRHGHRAVAIKDLMLVFGGGNEG-IVEELHVFNTATNQW-FIPTLK 70
PR G V + + V GG + G + + V++ TN W +P++
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 29.9 bits (68), Expect = 0.19
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 249 PRSLHTACVIGDRMFIFGGW 268
PRS V+G ++++ GG+
Sbjct: 1 PRSGAGVVVLGGKIYVIGGY 20
Score = 29.2 bits (66), Expect = 0.40
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 195 PRESHTACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQK 239
PR K+ + GG G LS + + D + TW K
Sbjct: 1 PRSGAGVVVL-----GGKIYVIGGYDGGQSLSSVEVYDPETNTWSK 41
Score = 26.5 bits (59), Expect = 3.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 131 PRLGHSFTLIGNKVYLFGGLANS 153
PR G ++G K+Y+ GG
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGG 23
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 38.6 bits (90), Expect = 0.004
Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 30/201 (14%)
Query: 71 GDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPC 130
G +P AAYG + + + G + S +Y + + + + L + S P
Sbjct: 57 GQLPYA-AAYGASISTENGIYYIGGSNSSESFSSVYRITLDESK-EALIIET--LPSLPF 112
Query: 131 PRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTT-VWDMPGTY 189
S T K+Y+ GG AN PS K FY L++ + D PG
Sbjct: 113 AMDNGSATYKDGKLYVGGGNANG-------KPSNK----FYCFNLETQEWEELPDFPG-- 159
Query: 190 GGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLP 249
+PR +E L ++GG +D + + TW+K P
Sbjct: 160 ----APRVQPVCVKLQNE-----LYVFGGGDNIAYTDGYKYSPKTGTWEKVADPLSDGEP 210
Query: 250 RSLHTACVIG---DRMFIFGG 267
SL A I + GG
Sbjct: 211 ISLLGAASIAINESLLLCIGG 231
Score = 38.2 bits (89), Expect = 0.005
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 21/125 (16%)
Query: 214 IIYGGMSGN--RLSDLFMLDINSMTWQ-KPQILGPQPLPRSLHTACVIGDRMFIFGGWVP 270
I Y G S + S ++ + ++ + L P +A ++++ GG
Sbjct: 75 IYYIGGSNSSESFSSVYRITLDESKEALIIETLPSLPFAMDNGSATYKDGKLYVGGG--- 131
Query: 271 ILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYI 330
K SN+ C +L WE+L DF PR + + +Y+
Sbjct: 132 ----------NANGKPSNKFYCFNLETQEWEELP-----DFPGAPRVQPVCVKLQNELYV 176
Query: 331 WSGRD 335
+ G D
Sbjct: 177 FGGGD 181
Score = 27.8 bits (62), Expect = 9.4
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 45/155 (29%)
Query: 14 WRRIDDP-AGPQPRPRHGHRAVAIKD-LMLVFGGGNEGIVEELHVFNTATNQWFIPTLKG 71
W ++ DP + +P G ++AI + L+L GG N + FN A + + T+K
Sbjct: 198 WEKVADPLSDGEPISLLGAASIAINESLLLCIGGFNYDV------FNDAVIR--LATMKD 249
Query: 72 DIPPGCAA--YGIVVD----NTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRF 125
+ AA + D N +VLI+ V GK WK +
Sbjct: 250 ESLKSYAAEYFLHPPDWYRWNDKVLIYD--VRSGK--------------WKSIGN----- 288
Query: 126 GSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKP 160
SP R G + L GN +++ G E KP
Sbjct: 289 -SPFVARCGAALLLTGNNLFVING-------EIKP 315
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose Oxidase
for which a structure has been solved. The kelch motif
forms a beta sheet. Several of these sheets associate to
form a beta propeller structure as found in pfam00064,
pfam00400 and pfam00415.
Length = 48
Score = 34.3 bits (79), Expect = 0.005
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 249 PRSLHTACVIGDRMFIFGGWVPILKDESRSLH-----EKEWKCSNQL 290
PR H + V+G ++++ GG + S L W L
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 30.8 bits (70), Expect = 0.11
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 27 PRHGHRAVAIKDLMLVFGG---GNEGIVEELHVFNTATNQW 64
PR+ H +V + + V GG + +L V + TN W
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVW 41
Score = 28.5 bits (64), Expect = 0.70
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 131 PRLGHSFTLIGNKVYLFGGLANSGGD 156
PR H+ ++G K+Y+ GG G
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDL 26
Score = 26.6 bits (59), Expect = 3.1
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 82 IVVDNTRVLIFGGMV-EYGKYSSDLYELQASKWEWKRLKPKP 122
VV ++ + GG SSDL+ L W L P
Sbjct: 7 SVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 35.4 bits (81), Expect = 0.056
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 36 IKDLMLVFGGGNEGIVEE-LHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGG 94
I D + GG N VE + + ++W + D+P ++YG+ V + + I GG
Sbjct: 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKW---KMLPDMPIALSSYGMCVLDQYIYIIGG 406
Query: 95 MVEYGKYSS 103
E+ Y+S
Sbjct: 407 RTEHIDYTS 415
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 30.9 bits (70), Expect = 0.10
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 78 AAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPR 132
+ V ++ +FGG K S+ + W++L P PR
Sbjct: 3 TGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKL-------PPLPTPR 50
Score = 29.7 bits (67), Expect = 0.29
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 27 PRHGHRAVAIKDLMLVFGGGNEG--IVEELHVFNTATNQW 64
PR GH AV++ + VFGG + G ++ V++ T W
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSW 40
Score = 29.3 bits (66), Expect = 0.40
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 131 PRLGHSFTLIGNKVYLFGGLANSG 154
PR GHS +G K+Y+FGG +N
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGS 24
>gnl|CDD|132163 TIGR03119, one_C_fhcD, formylmethanofuran--tetrahydromethanopterin
N-formyltransferase. Members of this protein family are
the FhcD protein of tetrahydromethanopterin
(H4MPT)-dependent C-1 carrier metabolism. In the
archaea, FhcD is designated
formylmethanofuran--tetrahydromethanopterin
N-formyltransferase, while in bacteria it is commonly
designated as formyltransferase/hydrolase complex
subunit D. FhcD is essential for one-carbon metabolism
in at least three groups of prokaryotes: methanogenic
archaea, sulfate-reducing archaea, and methylotrophic
bacteria [Central intermediary metabolism, One-carbon
metabolism].
Length = 287
Score = 30.1 bits (68), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 58 NTATNQWFIPTLKG----DIPPGC-AAYGIVVD 85
+TN + PTLK ++P G A Y IV+D
Sbjct: 209 PASTNDAYCPTLKDQVESELPEGVNAVYEIVID 241
>gnl|CDD|235003 PRK02114, PRK02114, formylmethanofuran--tetrahydromethanopterin
formyltransferase; Provisional.
Length = 297
Score = 29.4 bits (67), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 61 TNQWFIPTLKG-----DIPPGC-AAYGIVVD 85
TN + PTLKG ++P G A Y IV+D
Sbjct: 219 TNDAYCPTLKGKVEDSELPEGVNAVYEIVID 249
>gnl|CDD|178487 PLN02899, PLN02899, alpha-galactosidase.
Length = 633
Score = 29.4 bits (66), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 114 EWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFG 148
EW R P P R+ P R G FT + KV+ G
Sbjct: 95 EWGRPIPDPGRW---PSSRGGKGFTEVAEKVHAMG 126
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 29.1 bits (65), Expect = 4.5
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 161 TPSYKYLDDFYTLELKS---GHTTVWDMPGT 188
TP +DF T L + G T + DMP
Sbjct: 57 TPGETEKEDFSTGTLSAIFGGTTFIMDMPNN 87
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 29.2 bits (65), Expect = 4.6
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 14 WRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEG-IVEELHVFNTATNQWFI 66
W IDDP P+ P + + + +L+ GG G ++ + V+N T W I
Sbjct: 427 WTLIDDPIYPRDNP----ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476
Score = 28.1 bits (62), Expect = 9.8
Identities = 38/142 (26%), Positives = 52/142 (36%), Gaps = 33/142 (23%)
Query: 128 PP--CPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDM 185
PP PRL S NK+Y+ GGL N PT ++ G +M
Sbjct: 303 PPMNSPRLYASGVPANNKLYVVGGLPN-------PTSVERWF---------HGDAAWVNM 346
Query: 186 PGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGP 245
P L PR C+ N + + GG S + ++L + WQ GP
Sbjct: 347 P----SLLKPR-----CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ-WQ----FGP 392
Query: 246 QP-LPRSLHTACVIGDRMFIFG 266
P A V G R+F+ G
Sbjct: 393 STYYPHYKSCALVFGRRLFLVG 414
>gnl|CDD|237548 PRK13893, PRK13893, conjugal transfer protein TrbM; Provisional.
Length = 193
Score = 27.8 bits (62), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 317 AGHC-ASVINSRMYIWSGRDDYKKAWNNQ 344
AG C A +NS + +W+G DD + +NQ
Sbjct: 100 AGRCDAQSLNSTLVVWTGYDDGRTYISNQ 128
>gnl|CDD|217728 pfam03787, RAMPs, RAMP superfamily. The molecular function of
these proteins is not yet known. However, they have
been identified and called the RAMP (Repair Associated
Mysterious Proteins) superfamily. The members of this
family have no known function they are around 300 amino
acids in length and have several conserved motifs.
Length = 92
Score = 26.7 bits (59), Expect = 6.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 41 LVFGGGNEGIVEELHVFNTATNQWFIP--TLKG----DIPPGCAAYGIVVDNTR 88
L GGG G +E+ VF +IP ++KG IPPG + +
Sbjct: 8 LHIGGGEGGPIEDSLVFRDVDGLPYIPGSSIKGALLELIPPGLGFLEFLDNLDD 61
>gnl|CDD|187857 cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP
superfamily protein. CRISPR (Clustered Regularly
Interspaced Short Palindromic Repeats) and associated
Cas proteins comprise a system for heritable host
defense by prokaryotic cells against phage and other
foreign DNA; RAMP superfamily proteins.
Length = 177
Score = 27.8 bits (61), Expect = 7.0
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 41 LVFGGGNEGIVEELHVFNTATNQWFIP--TLKG 71
L GGG + V +T +IP +LKG
Sbjct: 5 LHIGGGRSSGSLDDIVRRDSTGLPYIPGSSLKG 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.468
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,718,480
Number of extensions: 1981367
Number of successful extensions: 1494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1458
Number of HSP's successfully gapped: 62
Length of query: 390
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 291
Effective length of database: 6,546,556
Effective search space: 1905047796
Effective search space used: 1905047796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)