RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1098
(390 letters)
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 157 bits (398), Expect = 9e-43
Identities = 50/341 (14%), Positives = 94/341 (27%), Gaps = 52/341 (15%)
Query: 8 NCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIP 67
N V ++ P R + + GG N V E+ + ++ +
Sbjct: 370 NLTVDEDYQL--LECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMK 427
Query: 68 TLK---GDIPPG--CAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKP 122
++ ++P C + + N ++L+ GG + SD + EW +
Sbjct: 428 NIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI---- 483
Query: 123 PRFGSPPCPRLGHSFTLIGN-KVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTT 181
S R HS + + V + GG+ +
Sbjct: 484 ---KSLSHTRFRHSACSLPDGNVLILGGVTEGP--------------AMLLYNVTEEI-- 524
Query: 182 VWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-RLSD---LFMLDINSMTW 237
+ + D +I+ GG +SD +F D + T
Sbjct: 525 -FKDVTPKDEFFQNSLVSAGLEF-DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATE 582
Query: 238 QKPQI--LGPQPLPRSLHTACVIGD-RMFIFGGWVPILKDESRSLHEKEWKCSNQLACLH 294
I L R I ++ I GG P + +N + L
Sbjct: 583 PITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSP----------SGLFDRTNSIISLD 632
Query: 295 LPEMTWEDLSV-EVTDDFLPKPRAGHCASVINS-RMYIWSG 333
T + + + AG + ++I G
Sbjct: 633 PLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
Score = 132 bits (334), Expect = 5e-34
Identities = 45/340 (13%), Positives = 92/340 (27%), Gaps = 47/340 (13%)
Query: 5 SDDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQW 64
+ + D+ + H + F + + T
Sbjct: 318 EATKKELLKVEPFDEL--EEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDE 375
Query: 65 FIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPR 124
L+ + P + V V GG Y + K + K ++
Sbjct: 376 DYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSS-- 433
Query: 125 FGSPPCPRLGHSFTLIG--NKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTV 182
P R+ H+FT I N++ L GG + L D + ++K+
Sbjct: 434 -SEVPVARMCHTFTTISRNNQLLLIGGRKAPH----------QGLSDNWIFDMKTRE--- 479
Query: 183 WDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQI 242
W M + L R H+ACS + ++I GG++ + + ++ ++
Sbjct: 480 WSMIKS---LSHTRFRHSACS----LPDGNVLILGGVTEG--PAMLLYNVTEEIFKDVTP 530
Query: 243 LGPQPLPRSLHTACVIG----DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEM 298
+ + + GG+ + S++
Sbjct: 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGF------------MDQTTVSDKAIIFKYDAE 578
Query: 299 TWEDLSVEVTD-DFLPKPRAGHCASVI-NSRMYIWSGRDD 336
+ + R G I ++ I G
Sbjct: 579 NATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSP 618
Score = 117 bits (295), Expect = 6e-29
Identities = 39/259 (15%), Positives = 83/259 (32%), Gaps = 42/259 (16%)
Query: 95 MVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSG 154
+ + + E+ + E +L P R + GN V+ GG
Sbjct: 356 FTQGFLFDRSISEINLTVDEDYQLLE-----CECPINRKFGDVDVAGNDVFYMGGSNPY- 409
Query: 155 GDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLI 214
+++ L + + ++ + +P R HT T +N +L+
Sbjct: 410 -----------RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTF---TTISRNNQLL 455
Query: 215 IYGGMSGNR--LSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGD-RMFIFGGWVPI 271
+ GG LSD ++ D+ + W + R H+AC + D + I GG
Sbjct: 456 LIGGRKAPHQGLSDNWIFDMKTREWSM---IKSLSHTRFRHSACSLPDGNVLILGGV--- 509
Query: 272 LKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIW 331
+ ++ E ++D++ + AG ++ + I
Sbjct: 510 -------------TEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556
Query: 332 SGRDDYKKAWNNQVCCKDL 350
G + +++
Sbjct: 557 GGGFMDQTTVSDKAIIFKY 575
Score = 86.0 bits (212), Expect = 2e-18
Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 29/191 (15%)
Query: 179 HTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQ 238
T D P R+ + + GG + R++++ L I+
Sbjct: 371 LTVDEDYQLLECECPINRKFGDVDVAGN-----DVFYMGGSNPYRVNEILQLSIHYDKID 425
Query: 239 KPQIL---GPQPLPRSLHTACVIG--DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACL 293
I P+ R HT I +++ + GG + + +
Sbjct: 426 MKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGR------------KAPHQGLSDNWIF 473
Query: 294 HLPEMTWEDLSVEVTDDFLPKPRAGHCASVI-NSRMYIWSGRDDYKKAWNNQVCCKDLWY 352
+ W + L R H A + + + I G + V +
Sbjct: 474 DMKTREWSMIKS------LSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD 527
Query: 353 LEVEKPGPPGR 363
+ +
Sbjct: 528 VTPKDEFFQNS 538
Score = 83.6 bits (206), Expect = 1e-17
Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 15/154 (9%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAI----KDLMLVFGGGNEGIV----EELHVFNTATNQW 64
++ + P + + K +++ GG + + ++
Sbjct: 524 IFKDVT-PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATE 582
Query: 65 FIPTLKGDIPPGCAAYG---IVVDNTRVLIFGGMVEYG--KYSSDLYELQASKWEWKRLK 119
I +K P YG + ++LI GG G ++ + L +
Sbjct: 583 PITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP 642
Query: 120 PKPPRFGSPPCPRLGHSFTLIG-NKVYLFGGLAN 152
+ G S +++ GG A
Sbjct: 643 ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676
Score = 55.9 bits (134), Expect = 1e-08
Identities = 11/98 (11%), Positives = 25/98 (25%), Gaps = 10/98 (10%)
Query: 7 DNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKD-LMLVFGGGNEGIVE----ELHVFNTAT 61
D + R+G + I +L+ GG + + + + +
Sbjct: 576 DAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635
Query: 62 NQWFIPTLKGDIPPGCAAYG-----IVVDNTRVLIFGG 94
+ I + + + I GG
Sbjct: 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 102 bits (256), Expect = 1e-24
Identities = 54/356 (15%), Positives = 93/356 (26%), Gaps = 65/356 (18%)
Query: 25 PRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAY-GIV 83
P P D + + G +L +W T P G
Sbjct: 7 PVPFKSGTGAIDNDTVYIGLGSAGTAWYKL-DTQAKDKKW---TALAAFPGGPRDQATSA 62
Query: 84 VDNTRVLIFGGMVEYG----KYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTL 139
+ + +FGG+ + + +D+++ W +L P GH +
Sbjct: 63 FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMS------HAPMGMAGHVTFV 116
Query: 140 IGNKVYLFGG------------LANSGGDETKPTP-----------SYKYLDDFYTLELK 176
K Y+ GG L +G D T Y + + +
Sbjct: 117 HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176
Query: 177 SGH-TTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGG--MSGNRLSDLFMLDIN 233
+ + + P + K + G G R +F LD
Sbjct: 177 TQQWSYAGESPWY------GTAGAAVVNK-----GDKTWLINGEAKPGLRTDAVFELDFT 225
Query: 234 SMTWQKPQILGPQPLPRSL--HTACVIGDRMFIFGGWVPILKDESRSLHEKEW----KCS 287
+ L P P + A + D + GG E+ + K S
Sbjct: 226 GNNLKW-NKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKS 284
Query: 288 NQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNN 343
W+ L + RA + N+ + I G KA +
Sbjct: 285 YSTDIHLWHNGKWDKSGE------LSQGRAYGVSLPWNNSLLIIGGETAGGKAVTD 334
Score = 93.5 bits (232), Expect = 2e-21
Identities = 46/269 (17%), Positives = 82/269 (30%), Gaps = 62/269 (23%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNE------------------------ 48
W ++ P GH V GG N+
Sbjct: 97 SWVKL---MSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN 153
Query: 49 -----------GIVEELHVFNTATNQWFIPTLKGDIP-PGCAAYGIVVDNTRVLIFGGMV 96
+ L F+ +T QW + G+ P G A +V + + G
Sbjct: 154 AHYFDKKAEDYFFNKFLLSFDPSTQQW---SYAGESPWYGTAGAAVVNKGDKTWLINGEA 210
Query: 97 EYGKYSSDLYEL--QASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSG 154
+ G + ++EL + +W +L P P G + + + GG G
Sbjct: 211 KPGLRTDAVFELDFTGNNLKWNKLAPVS-----SPDGVAGGFAGISNDSLIFAGGAGFKG 265
Query: 155 GD---ETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNT 211
+ +++ L Y+ ++ H WD G L R + W N
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPW-----NN 317
Query: 212 KLIIYGGMS--GNRLSDLFMLDINSMTWQ 238
L+I GG + G ++D ++ +
Sbjct: 318 SLLIIGGETAGGKAVTDSVLITVKDNKVT 346
Score = 78.1 bits (192), Expect = 3e-16
Identities = 42/293 (14%), Positives = 74/293 (25%), Gaps = 74/293 (25%)
Query: 72 DIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCP 131
+ P + +DN V I G + + QA +W L P P
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLG---SAGTAWYKLDTQAKDKKWTALAA------FPGGP 55
Query: 132 RLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH-TTVWDMPGTYG 190
R + I +Y+FGG+ + T + +D + K+ +
Sbjct: 56 RDQATSAFIDGNLYVFGGIGKNSEGLT------QVFNDVHKYNPKTNSWVKLMSHA---- 105
Query: 191 GLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQKPQ-------- 241
P H N K + GG++ N L+
Sbjct: 106 --PMGMAGHVTFVH-----NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158
Query: 242 -----------------------ILGPQPL-PRSLHTACVIGDRMFIFGGWVPILKDESR 277
G P + GD+ ++ G K R
Sbjct: 159 KKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGE---AKPGLR 215
Query: 278 SLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYI 330
++ + L + ++ P AG A + N +
Sbjct: 216 ---------TDAVFELDFTGNNLK--WNKLAPVSSPDGVAGGFAGISNDSLIF 257
Score = 68.4 bits (167), Expect = 5e-13
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 192 LPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRS 251
P P +S T N + I G +G + LD + + + PR
Sbjct: 6 TPVPFKSGTGAID-----NDTVYIGLGSAGT---AWYKLDTQAKDKKWTALAAFPGGPRD 57
Query: 252 LHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDF 311
T+ I +++FGG E + N + + +W L
Sbjct: 58 QATSAFIDGNLYVFGGIGK--------NSEGLTQVFNDVHKYNPKTNSWVKLM-----SH 104
Query: 312 LPKPRAGHCASVINSRMYIWSGRD 335
P AGH V N + Y+ G +
Sbjct: 105 APMGMAGHVTFVHNGKAYVTGGVN 128
Score = 51.5 bits (123), Expect = 2e-07
Identities = 20/133 (15%), Positives = 34/133 (25%), Gaps = 23/133 (17%)
Query: 12 YRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEG------------------IVEE 53
+ P G A D ++ GG
Sbjct: 227 NNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS 286
Query: 54 LHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQ--AS 111
+ +W G++ G A + N +LI GG GK +D + +
Sbjct: 287 TDIHLWHNGKW---DKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDN 343
Query: 112 KWEWKRLKPKPPR 124
K + L+
Sbjct: 344 KVTVQNLEHHHHH 356
Score = 49.6 bits (118), Expect = 9e-07
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 24/97 (24%)
Query: 242 ILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHL--PEMT 299
+L P+P T + D ++I G L +
Sbjct: 2 VLPETPVPFKSGTGAIDNDTVYIGLG-----------------SAGTAWYKLDTQAKDKK 44
Query: 300 WEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDD 336
W L+ F PR ++ I+ +Y++ G
Sbjct: 45 WTALA-----AFPGGPRDQATSAFIDGNLYVFGGIGK 76
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 95.1 bits (237), Expect = 3e-22
Identities = 55/320 (17%), Positives = 91/320 (28%), Gaps = 63/320 (19%)
Query: 23 PQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGI 82
PR H A + L+ GG + L +N + W D+ +
Sbjct: 11 SGLVPRGSH-APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTW---LRLADLQVPRSGLAG 66
Query: 83 VVDNTRVLIFGGMVEYGKYSSDL-----YELQASKWEWKRLKPKPPRFGSPPCPRLGHSF 137
V + GG ++D Y ++W P P PR
Sbjct: 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW-----SPCAP----MSVPRNRIGV 117
Query: 138 TLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRE 197
+I +Y GG + + ++E W + + + R
Sbjct: 118 GVIDGHIYAVGGSHGCI-----------HHN---SVERYEPERDEWHLVAP---MLTRRI 160
Query: 198 SHTACSWTDEYKNTKLIIYGGMSG-NRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTAC 256
N L GG G NRL+ W+ + RS C
Sbjct: 161 GVGVAVL-----NRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIRSGAGVC 212
Query: 257 VIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPR 316
V+ + ++ GG+ D L+ E + TW V + R
Sbjct: 213 VLHNCIYAAGGY-----DGQDQLNSVE--------RYDVETETWT----FVAP--MKHRR 253
Query: 317 AGHCASVINSRMYIWSGRDD 336
+ +V R+Y+ G D
Sbjct: 254 SALGITVHQGRIYVLGGYDG 273
Score = 83.9 bits (208), Expect = 2e-18
Identities = 57/319 (17%), Positives = 99/319 (31%), Gaps = 69/319 (21%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEG-----IVEELHVFNTATNQWFIP 67
W PR G + L+ GG N L +N TNQW
Sbjct: 50 TWL----RLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW--- 102
Query: 68 TLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFG 126
+ + G+ V + + GG ++S + YE + +W
Sbjct: 103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW----------HLV 152
Query: 127 SP-PCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDM 185
+P R+G ++ +Y GG + L+ + E W M
Sbjct: 153 APMLTRRIGVGVAVLNRLLYAVGGFDGTN-----------RLN---SAECYYPERNEWRM 198
Query: 186 PGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSG-NRLSDLFMLDINSMTWQKPQILG 244
+ + R C + + GG G ++L+ + D+ + TW +
Sbjct: 199 ITA---MNTIRSGAGVCVL-----HNCIYAAGGYDGQDQLNSVERYDVETETWTF---VA 247
Query: 245 PQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304
P RS V R+++ GG+ D L E C TW +++
Sbjct: 248 PMKHRRSALGITVHQGRIYVLGGY-----DGHTFLDSVE--------CYDPDTDTWSEVT 294
Query: 305 VEVTDDFLPKPRAGHCASV 323
+ R+G +V
Sbjct: 295 R------MTSGRSGVGVAV 307
Score = 39.2 bits (92), Expect = 0.001
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 21/93 (22%)
Query: 245 PQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304
+PR H A +G ++ GG+ + + L + TW L+
Sbjct: 11 SGLVPRGSH-APKVGRLIYTAGGY--------------FRQSLSYLEAYNPSNGTWLRLA 55
Query: 305 VEVTDDFLPKPRAGHCASVINSRMYIWSGRDDY 337
L PR+G V+ +Y GR++
Sbjct: 56 D------LQVPRSGLAGCVVGGLLYAVGGRNNS 82
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 90.8 bits (226), Expect = 7e-21
Identities = 56/317 (17%), Positives = 106/317 (33%), Gaps = 64/317 (20%)
Query: 27 PRHGHRAVAIKDLMLVFGG--GNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVV 84
PR R + +++LV GG + ++ + ++ T +W + I V
Sbjct: 5 PRTRAR-LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEW---SFLPSITRKRRYVASVS 60
Query: 85 DNTRVLIFGGMVEYGKYSS----DLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLI 140
+ R+ + GG + SS D + W R T +
Sbjct: 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY---------SVAPMNVRRGLAGATTL 111
Query: 141 GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHT 200
G+ +Y+ GG S ++E + W M G + + RE
Sbjct: 112 GDMIYVSGGFDGSR-----------RHT---SMERYDPNIDQWSM---LGDMQTAREGAG 154
Query: 201 ACSWTDEYKNTKLIIYGGMSG-NRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIG 259
+ + GG G N L+ + D ++ W + P RS ++
Sbjct: 155 LVVA-----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMATKRSGAGVALLN 206
Query: 260 DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGH 319
D +++ GG+ D + L E ++ +W ++ + PR
Sbjct: 207 DHIYVVGGF-----DGTAHLSSVE--------AYNIRTDSWTTVTS------MTTPRCYV 247
Query: 320 CASVINSRMYIWSGRDD 336
A+V+ R+Y +G D
Sbjct: 248 GATVLRGRLYAIAGYDG 264
Score = 80.8 bits (200), Expect = 2e-17
Identities = 48/318 (15%), Positives = 91/318 (28%), Gaps = 64/318 (20%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGN-EGIVEELHVFNTATNQWFIPTLKG 71
W R R +V++ D + V GG + + + + ++ +
Sbjct: 42 EWS----FLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA 97
Query: 72 DIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFGSP-P 129
+ G + + GG +++S + Y+ +W
Sbjct: 98 PMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQW----------SMLGDMQ 147
Query: 130 CPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH-TTVWDMPGT 188
R G + +Y GG L+ + +GH T V M
Sbjct: 148 TAREGAGLVVASGVIYCLGGYDGLN-----------ILNSVEKYDPHTGHWTNVTPM--- 193
Query: 189 YGGLPSPRESHTACSWTDEYKNTKLIIYGGMSG-NRLSDLFMLDINSMTWQKPQILGPQP 247
+ R N + + GG G LS + +I + +W +
Sbjct: 194 ----ATKRSGAGVALL-----NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT---VTSMT 241
Query: 248 LPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEV 307
PR A V+ R++ G+ D + L E C +WE ++
Sbjct: 242 TPRCYVGATVLRGRLYAIAGY-----DGNSLLSSIE--------CYDPIIDSWEVVTS-- 286
Query: 308 TDDFLPKPRAGHCASVIN 325
+ R V+
Sbjct: 287 ----MGTQRCDAGVCVLR 300
Score = 75.8 bits (187), Expect = 1e-15
Identities = 37/254 (14%), Positives = 73/254 (28%), Gaps = 53/254 (20%)
Query: 88 RVLIFGGMVEYGKYSSDL--YELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVY 145
+L+ GG + Y+ + +W S R + + +++Y
Sbjct: 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWS---------FLPSITRKRRYVASVSLHDRIY 66
Query: 146 LFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWT 205
+ GG L L+ + VW + + R A +
Sbjct: 67 VIGGYDGR-----------SRLSSVECLDYTADEDGVWY---SVAPMNVRRGLAGATTL- 111
Query: 206 DEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFI 264
+ + GG G+ R + + D N W LG R V ++
Sbjct: 112 ----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTAREGAGLVVASGVIYC 164
Query: 265 FGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI 324
GG+ N + W +++ + R+G +++
Sbjct: 165 LGGY-------------DGLNILNSVEKYDPHTGHWTNVTP------MATKRSGAGVALL 205
Query: 325 NSRMYIWSGRDDYK 338
N +Y+ G D
Sbjct: 206 NDHIYVVGGFDGTA 219
Score = 72.7 bits (179), Expect = 2e-14
Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 52/255 (20%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGI----VEELHVFNTATNQWFIPT 68
W + P R A + D++ V GG + +E ++ +QW +
Sbjct: 92 VWYSV----APMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSME---RYDPNIDQW---S 141
Query: 69 LKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFGS 127
+ GD+ G+VV + + GG +S + Y+ W P
Sbjct: 142 MLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT-----NVTPM--- 193
Query: 128 PPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH-TTVWDMP 186
R G L+ + +Y+ GG + +L +++ TTV M
Sbjct: 194 -ATKRSGAGVALLNDHIYVVGGFDGTA-----------HLSSVEAYNIRTDSWTTVTSMT 241
Query: 187 GTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQKPQILGP 245
+PR A +L G GN LS + D +W+ ++
Sbjct: 242 -------TPRCYVGATVL-----RGRLYAIAGYDGNSLLSSIECYDPIIDSWE---VVTS 286
Query: 246 QPLPRSLHTACVIGD 260
R CV+ +
Sbjct: 287 MGTQRCDAGVCVLRE 301
Score = 47.7 bits (114), Expect = 2e-06
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 33/150 (22%)
Query: 192 LPSPRESHTACSWTDEYKNTKLIIYGGMSGNR--LSDLFMLDINSMTWQKPQILGPQPLP 249
+ PR + N L++ GG + + + D + W L
Sbjct: 2 MQGPRTRARLGA------NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF---LPSITRK 52
Query: 250 RSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHL---PEMTWEDLSVE 306
R + + DR+++ GG+ + + CL + W
Sbjct: 53 RRYVASVSLHDRIYVIGGY-------------DGRSRLSSVECLDYTADEDGVWY----S 95
Query: 307 VTDDFLPKPRAGHCASVINSRMYIWSGRDD 336
V + R A+ + +Y+ G D
Sbjct: 96 VAP--MNVRRGLAGATTLGDMIYVSGGFDG 123
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 85.4 bits (212), Expect = 6e-19
Identities = 48/316 (15%), Positives = 85/316 (26%), Gaps = 61/316 (19%)
Query: 25 PRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVV 84
R + + LM+V GG + + ++ +W ++P G+V
Sbjct: 4 VR-TRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERW---HQVAELPSRRCRAGMVY 59
Query: 85 DNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNK 143
V GG + + D Y+ +W R ++
Sbjct: 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQW-----TSVAN----MRDRRSTLGAAVLNGL 110
Query: 144 VYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACS 203
+Y GG S L ++E + + W + + R S
Sbjct: 111 LYAVGGFDGST-----------GLS---SVEAYNIKSNEWFHVAP---MNTRRSSVGVGV 153
Query: 204 WTDEYKNTKLIIYGGM---SGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGD 260
L GG S LS + + + W + RS V+ +
Sbjct: 154 V-----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRSGAGVGVLNN 205
Query: 261 RMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHC 320
++ GG D E W +V D + R
Sbjct: 206 LLYAVGGH-----DGPLVRKSVE--------VYDPTTNAWR----QVAD--MNMCRRNAG 246
Query: 321 ASVINSRMYIWSGRDD 336
+N +Y+ G D
Sbjct: 247 VCAVNGLLYVVGGDDG 262
Score = 83.9 bits (208), Expect = 2e-18
Identities = 54/319 (16%), Positives = 97/319 (30%), Gaps = 62/319 (19%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEG-IVEELHVFNTATNQWFIPTLKG 71
RW P R V + L+ GG N V + ++ +QW T
Sbjct: 41 RWH----QVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQW---TSVA 93
Query: 72 DIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFGSP-P 129
++ + G V N + GG SS + Y +++++W +P
Sbjct: 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW----------FHVAPMN 143
Query: 130 CPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTY 189
R ++G +Y GG + T+E + T W
Sbjct: 144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLS------------TVECYNATTNEWTYIAE- 190
Query: 190 GGLPSPRESHTACSWTDEYKNTKLIIYGGMSG-NRLSDLFMLDINSMTWQKPQILGPQPL 248
+ + R N L GG G + + D + W++ + +
Sbjct: 191 --MSTRRSGAGVGVL-----NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ---VADMNM 240
Query: 249 PRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVT 308
R C + +++ GG D S +L E + W +S
Sbjct: 241 CRRNAGVCAVNGLLYVVGGD-----DGSCNLASVE--------YYNPTTDKWTVVS---- 283
Query: 309 DDFLPKPRAGHCASVINSR 327
+ R+ +VI+ R
Sbjct: 284 -SCMSTGRSYAGVTVIDKR 301
Score = 60.8 bits (148), Expect = 1e-10
Identities = 36/216 (16%), Positives = 60/216 (27%), Gaps = 49/216 (22%)
Query: 141 GNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHT 200
K+ + G G K S + D W LPS R
Sbjct: 14 LPKLMVVVG-----GQAPKAIRSVECYDF---------KEERWH---QVAELPSRRCRAG 56
Query: 201 ACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIG 259
+ GG +G+ R+ + D W + RS A V+
Sbjct: 57 MVYM-----AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS---VANMRDRRSTLGAAVLN 108
Query: 260 DRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGH 319
++ GG+ D S L E ++ W ++ + R+
Sbjct: 109 GLLYAVGGF-----DGSTGLSSVE--------AYNIKSNEWFHVAP------MNTRRSSV 149
Query: 320 CASVINSRMYIWSGRDDYKKAWNNQVCC----KDLW 351
V+ +Y G D + + V C + W
Sbjct: 150 GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185
Score = 47.7 bits (114), Expect = 2e-06
Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 23/137 (16%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGI----VEELHVFNTATNQWFIPT 68
W I R G + +L+ GG + + VE V++ TN W
Sbjct: 184 EWTYI----AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVE---VYDPTTNAW---R 233
Query: 69 LKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSS-DLYELQASKWEWKRLKPKPPRFGS 127
D+ G+ N + + GG +S + Y KW
Sbjct: 234 QVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT-----VVSS---C 285
Query: 128 PPCPRLGHSFTLIGNKV 144
R T+I ++
Sbjct: 286 MSTGRSYAGVTVIDKRL 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 85.5 bits (212), Expect = 7e-19
Identities = 61/316 (19%), Positives = 88/316 (27%), Gaps = 67/316 (21%)
Query: 26 RPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVD 85
RPR I +FGG FN W T V
Sbjct: 5 RPRRKKHDYRI----ALFGGSQPQSCR---YFNPKDYSW---TDIRCPFEKRRDAACVFW 54
Query: 86 NTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVY 145
+ V I GG + D Y + W K PP PR + K+Y
Sbjct: 55 DNVVYILGGSQLFPIKRMDCYNVVKDSW-----YSKLG----PPTPRDSLAACAAEGKIY 105
Query: 146 LFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWT 205
GG G L E T W + + R SH
Sbjct: 106 TSGGS-EVGNS---------ALY---LFECYDTRTESWHT---KPSMLTQRCSHGMVEA- 148
Query: 206 DEYKNTKLIIYGGMSGN-----RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGD 260
N + + GG GN L+ + D + TW + L P R H + D
Sbjct: 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIEARKNHGLVFVKD 201
Query: 261 RMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHC 320
++F GG + L E + W+ V+ +P
Sbjct: 202 KIFAVGGQ-----NGLGGLDNVE--------YYDIKLNEWK----MVSP--MPWKGVTVK 242
Query: 321 ASVINSRMYIWSGRDD 336
+ + S +Y+ +G
Sbjct: 243 CAAVGSIVYVLAGFQG 258
Score = 78.1 bits (193), Expect = 2e-16
Identities = 43/317 (13%), Positives = 83/317 (26%), Gaps = 63/317 (19%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGD 72
W I P R V +++ + GG ++ + +N + W K
Sbjct: 35 SWTDIRCP----FEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSW---YSKLG 87
Query: 73 IPPGCAAYGIVVDNTRVLIFGGMVEYGKY--SSDLYELQASKWEWKRLKPKPPRFGSP-P 129
P + ++ GG + Y+ + W
Sbjct: 88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW----------HTKPSML 137
Query: 130 CPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH-TTVWDMPGT 188
R H +Y+ GG + S + L+ + + T + M
Sbjct: 138 TQRCSHGMVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCPM--- 187
Query: 189 YGGLPSPRESHTACSWTDEYKNTKLIIYGGMSG-NRLSDLFMLDINSMTWQKPQILGPQP 247
R++H D K+ GG +G L ++ DI W+ + P P
Sbjct: 188 ----IEARKNHGLVFVKD-----KIFAVGGQNGLGGLDNVEYYDIKLNEWKM---VSPMP 235
Query: 248 LPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEV 307
+G +++ G+ L + + W S
Sbjct: 236 WKGVTVKCAAVGSIVYVLAGF-----QGVGRL--------GHILEYNTETDKWVANSK-- 280
Query: 308 TDDFLPKPRAGHCASVI 324
+ C +
Sbjct: 281 ----VRAFPVTSCLICV 293
Score = 67.3 bits (165), Expect = 8e-13
Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 32/166 (19%)
Query: 192 LPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRS 251
R W + + I GG + + ++ +W P PR
Sbjct: 42 PFEKRRDAACVFW-----DNVVYILGGSQLFPIKRMDCYNVVKDSWYS---KLGPPTPRD 93
Query: 252 LHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDF 311
AC +++ GG E C +W
Sbjct: 94 SLAACAAEGKIYTSGGS------------EVGNSALYLFECYDTRTESWH----TKPS-- 135
Query: 312 LPKPRAGHCASVINSRMYIWSGRDDYKKAWN--NQVCC----KDLW 351
+ R H N +Y+ G + N + W
Sbjct: 136 MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 79.7 bits (197), Expect = 6e-17
Identities = 52/312 (16%), Positives = 92/312 (29%), Gaps = 71/312 (22%)
Query: 36 IKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGM 95
++DL+ + ++ A N+ + +L +V +V + GG+
Sbjct: 3 LQDLIFMISEEG---AV---AYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGL 54
Query: 96 VEYGKYSSDL-------YELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFG 148
D ++ S+W PP P PR N +Y+ G
Sbjct: 55 FYNEDNKEDPMSAYFLQFDHLDSEW-----LGMPP----LPSPRCLFGLGEALNSIYVVG 105
Query: 149 GLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDM--PGTYGGLPSPRESHTACSWTD 206
G G + LD ++ + W P LP HT S
Sbjct: 106 GREIKDG--------ERCLD---SVMCYDRLSFKWGESDP-----LPYVVYGHTVLSH-- 147
Query: 207 EYKNTKLIIYGGMSGNR--LSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFI 264
+ + GG +R L+ + + D W++ L P RSL A V R+ +
Sbjct: 148 ---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQTARSLFGATVHDGRIIV 201
Query: 265 FGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI 324
G ++ E + + W P+ R+ +
Sbjct: 202 AAGV-----TDTGLTSSAE--------VYSITDNKWA----PFEA--FPQERSSLSLVSL 242
Query: 325 NSRMYIWSGRDD 336
+Y G
Sbjct: 243 VGTLYAIGGFAT 254
Score = 76.3 bits (188), Expect = 9e-16
Identities = 46/337 (13%), Positives = 92/337 (27%), Gaps = 67/337 (19%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGG-------GNEGIVEELHVFNTATNQWF 65
+ P++ V ++ + V GG + + F+ ++W
Sbjct: 24 ECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW- 79
Query: 66 IPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSS----DLYELQASKWEWKRLKPK 121
+P +G+ + + GG Y+ + KW
Sbjct: 80 --LGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-------- 129
Query: 122 PPRFGSP-PCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH- 179
P P GH+ + VY+ GG + K L+ + K
Sbjct: 130 --GESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR----------KCLNKMCVYDPKKFEW 177
Query: 180 TTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQ 238
+ M + R A + ++I+ G++ S + I W
Sbjct: 178 KELAPMQ-------TARSLFGATVH-----DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225
Query: 239 KPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEM 298
P RS + + ++ GG+ E N + + E
Sbjct: 226 P---FEAFPQERSSLSLVSLVGTLYAIGGF----ATLETESGELVPTELNDIWRYNEEEK 278
Query: 299 TWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRD 335
WE + L + A+ + R+ +
Sbjct: 279 KWEGV--------LREIAYAAGATFLPVRLNVLRLTK 307
Score = 55.1 bits (133), Expect = 1e-08
Identities = 32/171 (18%), Positives = 51/171 (29%), Gaps = 36/171 (21%)
Query: 192 LPSPRESHTACSWTDEYKNTKLIIYGGMSGNR-------LSDLFMLDINSMTWQKPQILG 244
P+ + + K ++ + GG+ N + D W +
Sbjct: 32 SQVPKNHVSLVT-----KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG---MP 83
Query: 245 PQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLS 304
P P PR L + +++ GG KD R L C W
Sbjct: 84 PLPSPRCLFGLGEALNSIYVVGGREI--KDGERCLDSVM--------CYDRLSFKWG--- 130
Query: 305 VEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCC----KDLW 351
E LP GH +Y+ G+ +K N++C K W
Sbjct: 131 -ESDP--LPYVVYGHTVLSHMDLVYVIGGKGSDRKCL-NKMCVYDPKKFEW 177
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 79.7 bits (197), Expect = 7e-17
Identities = 53/321 (16%), Positives = 90/321 (28%), Gaps = 75/321 (23%)
Query: 26 RPRHGHRAVAIKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVD 85
PRHG + +KDL+L+ ++ N+ ++ L IV
Sbjct: 7 IPRHG---MFVKDLILLVNDTA---AV---AYDPMENECYLTAL--AEQIPRNHSSIVTQ 55
Query: 86 NTRVLIFGGMVEYGKYSSD-------LYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFT 138
+V + GG+ + + +S+W PP P R
Sbjct: 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-----VGLPP----LPSARCLFGLG 106
Query: 139 LIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDM--PGTYGGLPSPR 196
+ +K+Y+ G Y + W LP
Sbjct: 107 EVDDKIYVVAGKDLQTEASLDSVLCYDPVAA------------KWSEVKN-----LPIKV 149
Query: 197 ESHTACSWTDEYKNTKLIIYGGM--SGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHT 254
H S N + GG + +F+ + W+ L P PRS+
Sbjct: 150 YGHNVISH-----NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD---LAPMKTPRSMFG 201
Query: 255 ACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPK 314
+ ++ I GG E E L WE +T+ P+
Sbjct: 202 VAIHKGKIVIAGGV-----TEDGLSASVE--------AFDLKTNKWE----VMTE--FPQ 242
Query: 315 PRAGHCASVINSRMYIWSGRD 335
R+ + +Y G
Sbjct: 243 ERSSISLVSLAGSLYAIGGFA 263
Score = 71.2 bits (175), Expect = 5e-14
Identities = 48/331 (14%), Positives = 101/331 (30%), Gaps = 66/331 (19%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGG-------GNEGIVEELHVFNTATNQWF 65
A + PR+ V ++ + V GG ++ + + +++W
Sbjct: 35 ECYL---TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW- 90
Query: 66 IPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSD---LYELQASKWEWKRLKPKP 122
+P +G+ + ++ + G + S D Y+ A+KW
Sbjct: 91 --VGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--------- 139
Query: 123 PRFGSP-PCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH-T 180
P GH+ +Y GG + K + + K G
Sbjct: 140 -SEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK----------KCTNRVFIYNPKKGDWK 188
Query: 181 TVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGN-RLSDLFMLDINSMTWQK 239
+ M +PR K++I GG++ + + + D+ + W+
Sbjct: 189 DLAPMK-------TPRSMFGVAIH-----KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236
Query: 240 PQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMT 299
+ P RS + + ++ GG+ E N + +
Sbjct: 237 ---MTEFPQERSSISLVSLAGSLYAIGGFA----MIQLESKEFAPTEVNDIWKYEDDKKE 289
Query: 300 WEDLSVEVTDDFLPKPRAGHCASVINSRMYI 330
W + L + R AS + +R+ +
Sbjct: 290 WAGM--------LKEIRYASGASCLATRLNL 312
Score = 71.2 bits (175), Expect = 6e-14
Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 50/242 (20%)
Query: 99 GKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDET 158
++ Y+ ++ + PR S N+VY+ GGL ++
Sbjct: 22 NDTAAVAYDPMENEC-YLTALA-------EQIPRNHSSIVTQQNQVYVVGGLYVDEENKD 73
Query: 159 KPTPSYKYLDDFYTLELKSGHTTVW-DMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYG 217
+P SY + D + E W +P LPS R + K+ +
Sbjct: 74 QPLQSYFFQLDNVSSE--------WVGLP----PLPSARCLFGLGEV-----DDKIYVVA 116
Query: 218 GMSGN---RLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKD 274
G L + D + W + + P+ H ++ GG
Sbjct: 117 GKDLQTEASLDSVLCYDPVAAKWSE---VKNLPIKVYGHNVISHNGMIYCLGG------- 166
Query: 275 ESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGR 334
+ KC+N++ + + W+DL+ + PR+ ++ ++ I G
Sbjct: 167 -----KTDDKKCTNRVFIYNPKKGDWKDLAP------MKTPRSMFGVAIHKGKIVIAGGV 215
Query: 335 DD 336
+
Sbjct: 216 TE 217
Score = 70.1 bits (172), Expect = 1e-13
Identities = 39/269 (14%), Positives = 79/269 (29%), Gaps = 60/269 (22%)
Query: 13 RWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGIVEELH---VFNTATNQWFIPTL 69
W + P P R + D + V G + L ++ +W +
Sbjct: 89 EWVGL----PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW---SE 141
Query: 70 KGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDL--YELQASKWEWKRLKPKPPRFGS 127
++P + ++ N + GG + K ++ + Y + W+ P
Sbjct: 142 VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-----DLAPM--- 193
Query: 128 PPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH-TTVWDMP 186
PR + K+ + GG+ G +LK+ + + P
Sbjct: 194 -KTPRSMFGVAIHKGKIVIAGGVTEDG-----------LSASVEAFDLKTNKWEVMTEFP 241
Query: 187 GTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNR----------LSDLFMLDINSMT 236
R S + S L GG + + ++D++ + +
Sbjct: 242 -------QERSSISLVSL-----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289
Query: 237 WQKPQILGPQPLPRSLHTACVIGDRMFIF 265
W G R A + R+ +F
Sbjct: 290 WA-----GMLKEIRYASGASCLATRLNLF 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 64/376 (17%), Positives = 111/376 (29%), Gaps = 134/376 (35%)
Query: 21 AGPQPRPRHGH----RAVAIKD--LMLVFGG-GN-EGIVEEL-HVFNTATNQWFIPTLKG 71
+P + + RAV + L+ +FGG GN + EEL ++ T
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT------------ 179
Query: 72 DIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLKPK---------- 121
Y ++V + LI + L EL + + +++ +
Sbjct: 180 --------YHVLVGD---LIK-------FSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 122 PPRFGSPPCPRLGH---SFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSG 178
P +P L S LIG + LA+ Y+ L G
Sbjct: 222 PSN--TPDKDYLLSIPISCPLIG----VI-QLAH-------------YVVTAKLLGFTPG 261
Query: 179 HTTVWDMPGTYG---GLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFMLDINSM 235
+ + G G GL + SW + + + ++ LF + +
Sbjct: 262 ELRSY-LKGATGHSQGLVTAVAIAETDSWESFFVSVRKA---------ITVLFFIGVRC- 310
Query: 236 TWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHL 295
+ LP S+ + VP S L+ +L
Sbjct: 311 --Y--EAYPNTSLPPSILEDSLEN------NEGVP----------------SPMLSISNL 344
Query: 296 PEMTWEDLSVEVTDDFLPKPRAGHCASVINSRMYIWSGRDDYKKAWNNQVCC---KDLWY 352
+ +D V T+ LP + S++N N V + L+
Sbjct: 345 TQEQVQDY-VNKTNSHLPAGKQVE-ISLVNGA--------------KNLVVSGPPQSLYG 388
Query: 353 L--EVEK-PGPPGRIQ 365
L + K P G Q
Sbjct: 389 LNLTLRKAKAPSGLDQ 404
Score = 37.3 bits (86), Expect = 0.009
Identities = 30/176 (17%), Positives = 47/176 (26%), Gaps = 74/176 (42%)
Query: 182 VWD-----MPGTYGGLPSPRESHTACSWTDEYKN--TKLIIY-GGMSGNRLSDLFMLDIN 233
VW+ TYG S D N L I+ GG G R+ + +
Sbjct: 1645 VWNRADNHFKDTYGF-----------SILDIVINNPVNLTIHFGGEKGKRIRENYS---- 1689
Query: 234 SMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACL 293
+M ++ D I K+ + ++ L L
Sbjct: 1690 AMIFETIV------------------DGKLKT---EKIFKEINEHSTSYTFRSEKGL--L 1726
Query: 294 HLPEMT-----------WEDL---SVEVTDDFLPKPRAGH----------CASVIN 325
+ T +EDL + D AGH A V++
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATF----AGHSLGEYAALASLADVMS 1778
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 30.3 bits (67), Expect = 1.3
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 20 PAGPQPRPRHGHRAVAIKD-LMLVFGGGNEG-------IVEELHVFNTATNQWFIPTLKG 71
+ R H +V + D + GG G V ++ + ++
Sbjct: 448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPN 506
Query: 72 DIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDL 105
I + +++ + RV GG + ++
Sbjct: 507 SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHF 540
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 172 TLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIY 216
T+E K+ TVWD+ GG R W ++NT+ +I+
Sbjct: 67 TVEYKNICFTVWDV----GGQDKIRP-----LWRHYFQNTQGLIF 102
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 29.6 bits (66), Expect = 2.2
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 177 SGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGG 218
S W +G D K+ ++I++
Sbjct: 175 SWEGWHWGGMHMWGFSWRLGNPEQYDLLEDGLKHAEMIVFWS 216
>1p5v_A CAF1M chaperone, chaperone protein CAF1M, CAF1M; chaperone-target
complex, chaperone-subunit complex, protein fiber; 1.70A
{Yersinia pestis} SCOP: b.1.11.1 b.7.2.1 PDB: 1p5u_A
1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A
Length = 235
Score = 28.3 bits (62), Expect = 4.0
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 73 IPPGCAAYGIVVDNTRVLIFGG----MVEYGKYSSDLYELQASKWEWK-RLKPKPPRFGS 127
I YG+ + +R++ MV +Q+ ++ + + P +
Sbjct: 5 IKFASKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVT 64
Query: 128 PPCPRLGH 135
PP RL
Sbjct: 65 PPLFRLDA 72
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 28.6 bits (64), Expect = 4.1
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 54 LHVFNTATNQWFIPTLKGDIPPGCAAYGIVV--DNTRVLI 91
+ F + T + I G + I D +
Sbjct: 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.9 bits (63), Expect = 4.2
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 172 TLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIY 216
T+ K+ VWD+ GGL S R W Y NT +IY
Sbjct: 45 TVTYKNLKFQVWDL----GGLTSIRP-----YWRCYYSNTDAVIY 80
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 28.3 bits (63), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 172 TLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIY 216
T+E K+ TVWD+ GG R W ++NT+ +I+
Sbjct: 203 TVEYKNISFTVWDV----GGQDKIRP-----LWRHYFQNTQGLIF 238
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 27.2 bits (61), Expect = 6.7
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 172 TLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIY 216
+++ + VWD+ GG R W ++NT ++IY
Sbjct: 54 SVQSQGFKLNVWDI----GGQRKIRP-----YWRSYFENTDILIY 89
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 27.5 bits (61), Expect = 7.8
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 108 LQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGN 142
++ E +RLK + + +SFT IG+
Sbjct: 72 YWSAFTEVERLKKAYGGARAKVVHAMKYSFTDIGS 106
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase;
alpha/beta sandwich; 1.85A {Methanosarcina barkeri}
SCOP: d.58.33.1 d.58.33.1
Length = 297
Score = 27.1 bits (60), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 61 TNQWFIPTLKG-----DIPPGC-AAYGIVVD 85
N+ F P++K +IP A Y IV++
Sbjct: 220 ANERFCPSIKDKIENTEIPADVNAVYEIVIN 250
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution,
glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria
phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Length = 670
Score = 27.5 bits (60), Expect = 9.7
Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 20/146 (13%)
Query: 124 RFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVW 183
G P HSF I N + G GD Y D +
Sbjct: 276 DLGLIPSVTEVHSFATIDNNGFAMG---YHQGDVAPREVGLFYFPD------------AF 320
Query: 184 DMPGTYGG--LPSPRESHTACSWTDEYKNTKLIIYGGMSGNRL-SDLFMLDINSMTWQKP 240
+ P Y +PS E + Y +I G G+RL S L TW+
Sbjct: 321 NSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESL 380
Query: 241 QILGPQPLPRSLHTACVIGDRMFIFG 266
+ P + + +GD + +FG
Sbjct: 381 RF--PHNVHHTTLPFAKVGDDLIMFG 404
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.468
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,525,261
Number of extensions: 391266
Number of successful extensions: 1004
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 70
Length of query: 390
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 295
Effective length of database: 4,049,298
Effective search space: 1194542910
Effective search space used: 1194542910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)