RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1098
(390 letters)
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 60.7 bits (145), Expect = 5e-11
Identities = 41/313 (13%), Positives = 84/313 (26%), Gaps = 53/313 (16%)
Query: 36 IKDLMLVFGGGNEGIVEELHVFNTATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGM 95
+ L+ GG + L +N + W D+ + V + GG
Sbjct: 3 VGRLIYTAGGYFRQSLSYLEAYNPSNGTW---LRLADLQVPRSGLAGCVVGGLLYAVGG- 58
Query: 96 VEYGKYSSDLYELQASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGG 155
S D ++ + + + PR +I +Y GG
Sbjct: 59 ---RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH 115
Query: 156 DETKP-----TPSYKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDE--- 207
+ + + T + G + + GG ++A + E
Sbjct: 116 HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 175
Query: 208 -----------------YKNTKLIIYGGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPR 250
+ + GG G L ++ + + + P R
Sbjct: 176 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ--DQLNSVERYDVETETWTFVAPMKHRR 233
Query: 251 SLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDD 310
S V R+++ GG+ + + C TW +++
Sbjct: 234 SALGITVHQGRIYVLGGY-------------DGHTFLDSVECYDPDTDTWSEVTR----- 275
Query: 311 FLPKPRAGHCASV 323
+ R+G +V
Sbjct: 276 -MTSGRSGVGVAV 287
Score = 36.8 bits (83), Expect = 0.003
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 1 MDKLSDDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGG-GNEGIVEELHVFNT 59
+ P R + + V GG ++ + ++
Sbjct: 206 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 265
Query: 60 ATNQWFIPTLKGDIPPGCAAYGIVV 84
T+ W + + G + G+ V
Sbjct: 266 DTDTW---SEVTRMTSGRSGVGVAV 287
Score = 33.0 bits (73), Expect = 0.052
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 20/90 (22%)
Query: 258 IGDRMFIFGGWVPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRA 317
+G ++ GG+ + + L + TW L+ L PR+
Sbjct: 3 VGRLIYTAGGYF--------------RQSLSYLEAYNPSNGTWLRLAD------LQVPRS 42
Query: 318 GHCASVINSRMYIWSGRDDYKKAWNNQVCC 347
G V+ +Y GR++ +
Sbjct: 43 GLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 72
Score = 31.0 bits (68), Expect = 0.20
Identities = 25/203 (12%), Positives = 49/203 (24%), Gaps = 29/203 (14%)
Query: 1 MDKLSDDNCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGI-VEELHVFNT 59
+ R P R G + L+ GG + + +
Sbjct: 112 GCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP 171
Query: 60 ATNQWFIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDLYELQASKWEWKRLK 119
N+W + T + + G+ V + + GG + +S +
Sbjct: 172 ERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSV--------ERYDVET 220
Query: 120 PKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGH 179
R T+ ++Y+ GG +LD + +
Sbjct: 221 ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH-----------TFLDSVECYDPDTD- 268
Query: 180 TTVWDMPGTYGGLPSPRESHTAC 202
W + S R
Sbjct: 269 --TWSE---VTRMTSGRSGVGVA 286
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 42.5 bits (98), Expect = 6e-05
Identities = 24/220 (10%), Positives = 61/220 (27%), Gaps = 14/220 (6%)
Query: 55 HVFNTATNQWF-IPTLKGDIPPGCAAYGIVVDNTRVLIF----GGMVEYGKYSSDLYELQ 109
V++ ++ W +P K + G+ + +F G + + G ++ +
Sbjct: 150 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT 209
Query: 110 ASKWEWKRLKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDD 169
+ + K + G P G++ K + + ++ T + +
Sbjct: 210 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITL 269
Query: 170 FYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIYGGMSGNRLSDLFM 229
+ + S + T + + +
Sbjct: 270 GEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG----IPFEDSTPVFTPEI 325
Query: 230 LDINSMTWQKPQILGPQPLPRSLHTACVIGD--RMFIFGG 267
T+ P + R H+ ++ R+F GG
Sbjct: 326 YVPEQDTFY---KQNPNSIVRVYHSISLLLPDGRVFNGGG 362
Score = 29.4 bits (64), Expect = 0.73
Identities = 35/374 (9%), Positives = 80/374 (21%), Gaps = 64/374 (17%)
Query: 20 PAGPQPRPRHGHRAVAIKDLMLVFGG-------GNEGIVEELHVFNTATNQW-FIPTLKG 71
P P +L++ G+ G + ++ +T
Sbjct: 13 PTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT 72
Query: 72 DIPPGCAAYGIVVDNTRVLIFGG--------------MVEYGKYSSDLYELQASKWEWKR 117
C + + V+ G + ++ R
Sbjct: 73 KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132
Query: 118 LKPKPPRFGSPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKS 177
+ + + G ++ + Y+ + + K
Sbjct: 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK 192
Query: 178 GH---------------------TTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIY 216
G + G P + + K
Sbjct: 193 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 252
Query: 217 GGMSGNRLS---DLFMLDINSMTWQKPQILGPQPLPRSLHTA-CVIGDRMFIFGGW-VPI 271
+ + + L + R+ HT+ + FI GG I
Sbjct: 253 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 312
Query: 272 LKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI--NSRMY 329
++S + E + T+ + R H S++ + R++
Sbjct: 313 PFEDSTPVFTPE--------IYVPEQDTFYKQNP------NSIVRVYHSISLLLPDGRVF 358
Query: 330 IWSGRDDYKKAWNN 343
G N+
Sbjct: 359 NGGGGLCGDCTTNH 372
Score = 29.0 bits (63), Expect = 0.93
Identities = 11/120 (9%), Positives = 27/120 (22%), Gaps = 21/120 (17%)
Query: 236 TWQKPQI-----LGPQPLPRSLHTACVIGDRMFIFGGWVPILKDESRSLHEKEWKCSNQL 290
T +P + P+ + R+ ++ +
Sbjct: 2 TAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN-------DAFGGSPGGITLT 54
Query: 291 ACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVI---NSRMYIWSGRDDYKKAWNNQVCC 347
+ D +V C + N ++ + G D K + +
Sbjct: 55 SSWDPSTGIVSDRTV------TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD 108
Score = 28.6 bits (62), Expect = 1.2
Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 10/106 (9%)
Query: 8 NCPVYRWRRIDDPAGPQPRPRHGHRAVAIKDLMLVFGGGNEGI-------VEELHVFNTA 60
P + G V + GG GI V ++
Sbjct: 270 GEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 329
Query: 61 TNQW-FIPTLKGDIPPGCAAYGIVVDNTRVLIFGGMVEYGKYSSDL 105
+ + I + +++ + RV GG + ++
Sbjct: 330 QDTFYKQNPNS--IVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHF 373
>d1m5ha2 d.58.33.1 (A:146-297)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 152
Score = 27.7 bits (62), Expect = 1.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 61 TNQWFIPTLKG-----DIPPGC-AAYGIVVD 85
TN+ F P+++ IP G A Y IV++
Sbjct: 75 TNEKFAPSIRDQVEGTQIPAGVKAVYEIVIN 105
>d1m5sa2 d.58.33.1 (A:146-297)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Methanosarcina barkeri
[TaxId: 2208]}
Length = 152
Score = 27.3 bits (61), Expect = 1.7
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 61 TNQWFIPTLKG-----DIPPGC-AAYGIVVD 85
N+ F P++K +IP A Y IV++
Sbjct: 75 ANERFCPSIKDKIENTEIPADVNAVYEIVIN 105
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis
[TaxId: 632]}
Length = 141
Score = 26.9 bits (59), Expect = 2.9
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 78 AAYGIVVDNTRVLIFGG----MVEYGKYSSDLYELQASKWEW-KRLKPKPPRFGSPPCPR 132
YG+ + +R++ MV +Q+ ++ K + + P +PP R
Sbjct: 4 KEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFR 63
Query: 133 LG 134
L
Sbjct: 64 LD 65
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga
maritima [TaxId: 2336]}
Length = 144
Score = 26.3 bits (57), Expect = 4.3
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 165 KYLDDF-YTLELKSGHTTVWDMPGTYGGL---PSPRE----SHTACSWTD 206
+++ + + + S H + D GG P P E C+ D
Sbjct: 10 RWIGNMMFHVRTDSNHDVLMDTKEEVGGKDAAPRPLELVLTGLMGCTGMD 59
>d2e2dc1 b.40.3.1 (C:1001-1180) TIMP-2 {Cow (Bos taurus) [TaxId:
9913]}
Length = 180
Score = 26.5 bits (58), Expect = 4.6
Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 5/89 (5%)
Query: 127 SPPCPRLGHSFTLIGNKVYLFGGLANSGGDETKPTPSYKYLDDFYTLELKSGHTTVWDMP 186
+P G S + G K YL G A G+ + D + K + M
Sbjct: 66 APAAAVCGVSLDIGGKKEYLIAGKAEGNGNMHITLCDFIVPWDTLSATQKKSLNHRYQMG 125
Query: 187 -----GTYGGLPSPRESHTACSWTDEYKN 210
+P S C W D
Sbjct: 126 CECKITRCPMIPCYISSPDECLWMDWVTE 154
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
275]}
Length = 335
Score = 26.9 bits (58), Expect = 5.0
Identities = 18/206 (8%), Positives = 37/206 (17%), Gaps = 12/206 (5%)
Query: 160 PTPSYKYLDDFYTLE---LKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEYKNTKLIIY 216
P + D T L G TT +M + S + +
Sbjct: 11 PFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFH 70
Query: 217 GGMSGNRLSDLFMLDINSMTWQKPQILGPQPLPRSLHTACVIGDRMFIFGGW-------- 268
+S L + + + +
Sbjct: 71 MAVSKFDEKTEGQLREIVADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHC 130
Query: 269 -VPILKDESRSLHEKEWKCSNQLACLHLPEMTWEDLSVEVTDDFLPKPRAGHCASVINSR 327
L + E K + PE + + G+ +
Sbjct: 131 ENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKP 190
Query: 328 MYIWSGRDDYKKAWNNQVCCKDLWYL 353
+ + + L
Sbjct: 191 ALDAAMAAKARGVPIYIESVIPHFLL 216
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 26.5 bits (58), Expect = 5.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 47 NEGIVEELHVFNTATNQWFIP 67
NE + L + T +WF+P
Sbjct: 335 NEHSTQRLAYRDPETGKWFVP 355
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium
cellulolyticum [TaxId: 1521]}
Length = 431
Score = 26.1 bits (57), Expect = 7.6
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 164 YKYLDDFYTLELKSGHTTVWDMPGTYGGLPSPRESHTACSWTDEY 208
YK +D Y + + ++ M G+ + + + A S+ D+
Sbjct: 169 YKNIDSAYATKCLNAAKELYAMGKANQGVGNGQSFYQATSFGDDL 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.468
Gapped
Lambda K H
0.267 0.0319 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,667,214
Number of extensions: 82770
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 25
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)