BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10980
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C3YN79|RTCB_BRAFL tRNA-splicing ligase RtcB homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_216547 PE=3 SV=1
Length = 507
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 44/46 (95%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCHAVGISKK KLRP+AVIKG
Sbjct: 462 RVASPKLVMEEAPESYKNVTDVVNTCHAVGISKKAIKLRPIAVIKG 507
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI+S EGQ+YLK MA AANFAWVNRSSMTFL RQ
Sbjct: 299 RIHSPEGQEYLKGMACAANFAWVNRSSMTFLSRQ 332
>sp|A7RKF6|RTCB_NEMVE tRNA-splicing ligase RtcB homolog OS=Nematostella vectensis
GN=v1g198406 PE=3 SV=1
Length = 505
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/46 (89%), Positives = 43/46 (93%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVVDTCH+ GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVDTCHSAGISKKAIKLRPIAVIKG 505
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 28/34 (82%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
I S EGQDYLK MA AAN+AWVNRSSMTFL RQ
Sbjct: 297 HIKSPEGQDYLKGMAGAANYAWVNRSSMTFLTRQ 330
>sp|Q9VIW7|RTCB_DROME tRNA-splicing ligase RtcB homolog OS=Drosophila melanogaster
GN=CG9987 PE=1 SV=1
Length = 506
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 43/46 (93%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 461 RVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQDYLK+MAAAANFAWVNRSSMTFL RQ
Sbjct: 298 RINSVEGQDYLKAMAAAANFAWVNRSSMTFLTRQ 331
>sp|A8QC60|RTCB_BRUMA tRNA-splicing ligase RtcB homolog OS=Brugia malayi GN=Bm1_49220
PE=3 SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 43/46 (93%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK+ KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKSVKLRPIAVIKG 505
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQDYLK MAAAANFAWVNRS MTF RQ
Sbjct: 297 RINSMEGQDYLKGMAAAANFAWVNRSCMTFCARQ 330
>sp|A9CB42|RTCB_PAPAN tRNA-splicing ligase RtcB homolog OS=Papio anubis PE=3 SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>sp|Q4R6X4|RTCB_MACFA tRNA-splicing ligase RtcB homolog OS=Macaca fascicularis
GN=QtsA-16939 PE=2 SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>sp|Q561P3|RTCB_XENTR tRNA-splicing ligase RtcB homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 31/37 (83%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILT 102
RI+S EGQDYLK MAAA N+AWVNRSSMTFL RQ +
Sbjct: 297 RISSAEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFS 333
>sp|Q6NZS4|RTCB_DANRE tRNA-splicing ligase RtcB homolog OS=Danio rerio GN=zgc:76871 PE=2
SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 31/37 (83%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILT 102
RI S+EGQDYLK MAAA N+AWVNRSSMTFL RQ +
Sbjct: 297 RITSEEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFS 333
>sp|Q19PY3|RTCB_PIG tRNA-splicing ligase RtcB homolog OS=Sus scrofa PE=2 SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>sp|Q9Y3I0|RTCB_HUMAN tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=C22orf28 PE=1
SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>sp|Q5E9T9|RTCB_BOVIN tRNA-splicing ligase RtcB homolog OS=Bos taurus PE=2 SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>sp|Q6AYT3|RTCB_RAT tRNA-splicing ligase RtcB homolog OS=Rattus norvegicus PE=2 SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>sp|Q99LF4|RTCB_MOUSE tRNA-splicing ligase RtcB homolog OS=Mus musculus GN=D10Wsu52e PE=2
SV=1
Length = 505
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>sp|P90838|RTCB_CAEEL tRNA-splicing ligase RtcB homolog OS=Caenorhabditis elegans
GN=F16A11.2 PE=3 SV=2
Length = 505
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R+ASPKL+MEEAPESYKNVTDVVDTC A GISKK KLRP+AVIKG
Sbjct: 460 RIASPKLIMEEAPESYKNVTDVVDTCDAAGISKKAVKLRPIAVIKG 505
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCR 98
RINS EG++Y MAAAANFAWVNRS +TF R
Sbjct: 297 RINSVEGKNYFSGMAAAANFAWVNRSCITFCVR 329
>sp|B3RID0|RTCB_TRIAD tRNA-splicing ligase RtcB homolog OS=Trichoplax adhaerens
GN=TRIADDRAFT_18395 PE=3 SV=1
Length = 510
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 43/46 (93%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VT+VV+TCH GISKK FKLRP+AVIKG
Sbjct: 465 RVASPKLVMEEAPESYKDVTNVVETCHLAGISKKCFKLRPIAVIKG 510
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQ+YLK MAAAAN+AWVNRSSMTFL RQ
Sbjct: 302 RIASDEGQNYLKGMAAAANYAWVNRSSMTFLARQ 335
>sp|A9UXG6|RTCB_MONBE tRNA-splicing ligase RtcB homolog OS=Monosiga brevicollis GN=24995
PE=3 SV=1
Length = 497
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VT VVDTCHA GISKK KLRP+AVIKG
Sbjct: 452 RVASPKLVMEEAPESYKDVTAVVDTCHAAGISKKVVKLRPIAVIKG 497
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 34/34 (100%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI+S+EGQ+YLK+MAAAAN+AWVNRS+MTFLCRQ
Sbjct: 289 RIHSEEGQNYLKAMAAAANYAWVNRSTMTFLCRQ 322
>sp|A8JC00|RTCB_CHLRE tRNA-splicing ligase RtcB homolog OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_139581 PE=3 SV=1
Length = 476
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+V++VVDTCH GISKK KLRP+AVIKG
Sbjct: 431 RVASPKLVMEEAPESYKDVSEVVDTCHQAGISKKAVKLRPIAVIKG 476
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS+EGQ YLK+M+ AAN+AWVNRSSMTFL RQ
Sbjct: 268 RINSEEGQAYLKAMSCAANYAWVNRSSMTFLARQ 301
>sp|Q7RI54|RTCB_PLAYO tRNA-splicing ligase RtcB homolog OS=Plasmodium yoelii yoelii
GN=PY03776 PE=3 SV=1
Length = 507
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKL+MEEAPESYKNV++VV TCH GIS K F+LRPVAVIKG
Sbjct: 462 RVASPKLIMEEAPESYKNVSEVVQTCHDSGISNKAFRLRPVAVIKG 507
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILT 102
I+S EGQ+YLK+M AA NFAW+NRSSMTFL RQ +
Sbjct: 300 IHSPEGQNYLKAMGAACNFAWINRSSMTFLARQAFS 335
>sp|C1MI97|RTCB_MICPC tRNA-splicing ligase RtcB homolog OS=Micromonas pusilla (strain
CCMP1545) GN=MICPUCDRAFT_24370 PE=3 SV=1
Length = 507
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 462 RVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 507
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQ+YL +M+ AAN+AWVNRSSMTFLCRQ
Sbjct: 299 RINSTEGQNYLSAMSCAANYAWVNRSSMTFLCRQ 332
>sp|Q4YUZ9|RTCB_PLABA tRNA-splicing ligase RtcB homolog OS=Plasmodium berghei (strain
Anka) GN=PB000816.02.0 PE=3 SV=1
Length = 505
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKL+MEEAPESYKNV++VV TCH GIS K F+LRPVAVIKG
Sbjct: 460 RVASPKLIMEEAPESYKNVSEVVQTCHDSGISNKCFRLRPVAVIKG 505
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 28/32 (87%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCR 98
I+S EGQ+YLK+M AA NFAW+NRSSMTFL +
Sbjct: 299 IHSPEGQNYLKAMGAACNFAWINRSSMTFLAQ 330
>sp|B3L4K9|RTCB_PLAKH tRNA-splicing ligase RtcB homolog OS=Plasmodium knowlesi (strain H)
GN=PKH_090290 PE=3 SV=1
Length = 511
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKL+MEEAPESYKNV++VV+TCH GIS K F+L+PVAVIKG
Sbjct: 466 RVASPKLIMEEAPESYKNVSEVVNTCHEAGISNKCFRLKPVAVIKG 511
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
I+SKEGQ+YLK+M +A NFAW+NRSSMTFL RQ
Sbjct: 304 IHSKEGQNYLKAMGSACNFAWINRSSMTFLARQ 336
>sp|Q8IIU6|RTCB_PLAF7 tRNA-splicing ligase RtcB homolog OS=Plasmodium falciparum (isolate
3D7) GN=PF11_0068 PE=3 SV=1
Length = 506
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 40/46 (86%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKL+MEEAPESYKNV DVV TCH GIS K F+L+PVAVIKG
Sbjct: 461 RVASPKLIMEEAPESYKNVCDVVQTCHDAGISNKCFRLKPVAVIKG 506
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILT 102
I+SKEGQ+YLK+M +A NFAW+NRSSMTFL RQ +
Sbjct: 299 IHSKEGQNYLKAMGSACNFAWINRSSMTFLARQAFS 334
>sp|C1E9Y5|RTCB_MICSR tRNA-splicing ligase RtcB homolog OS=Micromonas sp. (strain RCC299
/ NOUM17) GN=MICPUN_59883 PE=3 SV=1
Length = 513
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 468 RVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 513
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
+I+S EGQ+YL +M+ AAN+AWVNRSSMTFLCRQ
Sbjct: 305 KISSPEGQNYLSAMSCAANYAWVNRSSMTFLCRQ 338
>sp|Q00ZY2|RTCB_OSTTA tRNA-splicing ligase RtcB homolog OS=Ostreococcus tauri
GN=Ot10g01930 PE=3 SV=1
Length = 515
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 470 RVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG 515
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI+S+EGQDYL +MA AAN+AWVNRSSMTFLCRQ
Sbjct: 307 RISSQEGQDYLAAMACAANYAWVNRSSMTFLCRQ 340
>sp|A4S3S3|RTCB_OSTLU tRNA-splicing ligase RtcB homolog OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_25152 PE=3 SV=1
Length = 514
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VT+VV+TCH GISKK KLRP+AV+KG
Sbjct: 469 RVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG 514
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
+I+S+EGQDYL +MA AAN+AWVNRSSMTFLCRQ
Sbjct: 306 KISSQEGQDYLAAMACAANYAWVNRSSMTFLCRQ 339
>sp|Q54Y09|RTCB_DICDI tRNA-splicing ligase RtcB homolog OS=Dictyostelium discoideum
GN=DDB_G0278481 PE=3 SV=1
Length = 508
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 41/46 (89%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+V V++TCH GISKK+ KLRP+AVIKG
Sbjct: 463 RVASPKLVMEEAPESYKDVVQVIETCHKAGISKKSVKLRPIAVIKG 508
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQDYL MAAAANFAWVNR SMTFL RQ
Sbjct: 300 RINSTEGQDYLSGMAAAANFAWVNRQSMTFLTRQ 333
>sp|Q7Q412|RTCB_ANOGA tRNA-splicing ligase RtcB homolog OS=Anopheles gambiae
GN=AGAP008147 PE=3 SV=2
Length = 506
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 39/46 (84%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 461 RVASPKLVQEEAPDSYKDVRDVVQTCHDVGISNKAIKLRPIAVIKG 506
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQ+YLK+M+AAANFAWVNRSSMTFL RQ
Sbjct: 298 RINSPEGQNYLKAMSAAANFAWVNRSSMTFLTRQ 331
>sp|Q17FP1|RTCB_AEDAE tRNA-splicing ligase RtcB homolog OS=Aedes aegypti GN=AAEL003336
PE=3 SV=1
Length = 506
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 39/46 (84%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 461 RVASPKLVQEEAPDSYKDVRDVVQTCHDVGISAKAIKLRPIAVIKG 506
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/34 (88%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQ+YLK+MAAAANFAWVNRSSMTFL RQ
Sbjct: 298 RINSVEGQNYLKAMAAAANFAWVNRSSMTFLTRQ 331
>sp|B0WCT9|RTCB1_CULQU tRNA-splicing ligase RtcB homolog 1 OS=Culex quinquefasciatus
GN=CPIJ004874 PE=3 SV=1
Length = 506
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 39/46 (84%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLV EEAP+SYK+V DVV TCH VGIS K KLRP+AVIKG
Sbjct: 461 RVASPKLVQEEAPDSYKDVRDVVQTCHDVGISSKCIKLRPIAVIKG 506
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQ+YLK+M+AAANFAWVNRSSMTFL RQ
Sbjct: 298 RINSVEGQNYLKAMSAAANFAWVNRSSMTFLTRQ 331
>sp|Q4U923|RTCB_THEAN tRNA-splicing ligase RtcB homolog OS=Theileria annulata GN=TA10620
PE=3 SV=1
Length = 515
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 40/46 (86%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLV EEAPESYK+V++VV TCH GISKK KLRPVAVIKG
Sbjct: 470 RVASPKLVTEEAPESYKDVSEVVQTCHDSGISKKCVKLRPVAVIKG 515
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EG+ YLK MAAA+N+AWVNRS MT L R+
Sbjct: 307 RINSDEGKKYLKGMAAASNYAWVNRSVMTHLTRK 340
>sp|Q4N1R8|RTCB_THEPA tRNA-splicing ligase RtcB homolog OS=Theileria parva GN=TP04_0661
PE=3 SV=1
Length = 507
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 40/46 (86%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLV EEAPESYK+V++VV TCH GISKK KLRPVAVIKG
Sbjct: 462 RVASPKLVTEEAPESYKDVSEVVQTCHDSGISKKCVKLRPVAVIKG 507
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EG+ YLK MAAA+N+AWVNRS MT L R+
Sbjct: 299 RINSDEGKKYLKGMAAASNYAWVNRSVMTHLTRK 332
>sp|B8LBM8|RTCB_THAPS tRNA-splicing ligase RtcB homolog OS=Thalassiosira pseudonana
GN=THAPSDRAFT_41953 PE=3 SV=1
Length = 480
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 39/46 (84%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLV EEAPESYKNV DV++TC GIS+K KLRP+AVIKG
Sbjct: 435 RVASPKLVTEEAPESYKNVCDVIETCQVAGISEKVVKLRPIAVIKG 480
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 33/40 (82%)
Query: 63 SFLRINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILT 102
S RI+SKEG++YL +M+AAANFAWVNRS +T+L R+ +
Sbjct: 269 SCARISSKEGREYLAAMSAAANFAWVNRSCITYLARKAFS 308
>sp|B0XKF3|RTCB2_CULQU tRNA-splicing ligase RtcB homolog 2 OS=Culex quinquefasciatus
GN=CPIJ019543 PE=3 SV=1
Length = 502
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQ+YLK+M+AAANFAWVNRSSMTFL RQ
Sbjct: 298 RINSVEGQNYLKAMSAAANFAWVNRSSMTFLTRQ 331
>sp|B0EAV2|RTCB1_ENTDS tRNA-splicing ligase RtcB homolog 1 OS=Entamoeba dispar (strain
ATCC PRA-260 / SAW760) GN=EDI_022970 PE=3 SV=1
Length = 535
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R+ PKL EEA E+YK+VT+VV+TC A GISK +L+P+ VIKG
Sbjct: 490 RITDPKLAAEEADEAYKDVTEVVETCQAAGISKIVLRLKPLIVIKG 535
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 68 NSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
NS GQ Y +M ANFA+ NR +T+ RQ
Sbjct: 329 NSPIGQQYYSAMNCCANFAFANRGMITYRIRQ 360
>sp|C4M6T2|RTCB2_ENTHI tRNA-splicing ligase RtcB homolog 2 OS=Entamoeba histolytica
GN=EHI_184560 PE=3 SV=1
Length = 535
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R+ PKL EEA E+YK+VT+VV+TC A ISK +L+P+ VIKG
Sbjct: 490 RITDPKLAAEEADEAYKDVTEVVETCQAANISKIVLRLKPLIVIKG 535
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 68 NSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
NS GQ Y +M ANFA+ NR +T+ RQ
Sbjct: 329 NSPIGQQYYSAMNCCANFAFANRGMITYRIRQ 360
>sp|C4M244|RTCB1_ENTHI tRNA-splicing ligase RtcB homolog 1 OS=Entamoeba histolytica
GN=EHI_169260 PE=3 SV=1
Length = 524
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R+ PKL EEA ++YK+V +VV+TC + GIS+ FKL+P+ V+KG
Sbjct: 479 RITDPKLAAEEADDAYKDVKEVVETCQSAGISRIVFKLKPLIVVKG 524
>sp|B0EIW5|RTCB2_ENTDS tRNA-splicing ligase RtcB homolog 2 OS=Entamoeba dispar (strain
ATCC PRA-260 / SAW760) GN=EDI_260790 PE=3 SV=1
Length = 524
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R+ PKL EEA +YK+V +VV+TC + GISK FKL+P+ V+KG
Sbjct: 479 RITDPKLAAEEADGAYKDVKEVVETCQSAGISKIVFKLKPLIVVKG 524
>sp|Q58095|RTCB_METJA tRNA-splicing ligase RtcB OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rtcB PE=3 SV=1
Length = 968
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 8 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
S ++ EEAPE+YK+V V DTCH GIS K ++RP+ VIKG
Sbjct: 926 SKAVMAEEAPEAYKSVDLVADTCHKAGISLKVARMRPLGVIKG 968
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 68 NSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
S+EGQ Y K+M AN+AW NR +T R+
Sbjct: 762 ESEEGQSYFKAMCCGANYAWANRQMITHWVRE 793
>sp|Q74MJ0|RTCB_NANEQ tRNA-splicing ligase RtcB OS=Nanoarchaeum equitans (strain Kin4-M)
GN=rtcB PE=3 SV=1
Length = 477
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 12 VMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
V+EE PE+YK++ +VV H +GISK + RPVAVIKG
Sbjct: 439 VLEEIPEAYKDIDEVVRVTHELGISKIVARFRPVAVIKG 477
>sp|Q8ZY09|RTCB_PYRAE tRNA-splicing ligase RtcB OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rtcB
PE=1 SV=1
Length = 484
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R A +++ EEAP +YK+V VV+ H VG +KK + RP+ V+KG
Sbjct: 439 RSAETEVISEEAPWAYKDVDRVVEAAHQVGFAKKVVRQRPIGVVKG 484
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
+ K +DY+K+MA+AANFAW NR + R+
Sbjct: 276 LKDKVAEDYIKAMASAANFAWTNRHIIMHWVRE 308
>sp|Q6LXF9|RTCB_METMP tRNA-splicing ligase RtcB OS=Methanococcus maripaludis (strain S2 /
LL) GN=rtcB PE=3 SV=1
Length = 480
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 8 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
S ++ EE PE+YK++ +V D CH GIS K K++P+ V+KG
Sbjct: 438 SKGVIAEECPEAYKDIENVADICHDSGISLKVAKMKPMGVVKG 480
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILTS 103
INS+EGQ Y K+M+ AN+AW NR +T R+ S
Sbjct: 273 INSEEGQKYFKAMSCGANYAWANRQLITHWIRESFES 309
>sp|O29399|RTCB_ARCFU tRNA-splicing ligase RtcB OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rtcB PE=3 SV=1
Length = 482
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R L+ EEAPE+YK DVVD H GISK +LRP+ V KG
Sbjct: 437 RATHGALLAEEAPEAYKLSDDVVDVVHRAGISKLVARLRPLGVAKG 482
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
INSKEGQDY MAA+AN+AW NR + R+
Sbjct: 275 INSKEGQDYFAGMAASANYAWCNRQIIAHWVRE 307
>sp|Q5JCZ1|RTCB_PYRKO tRNA-splicing ligase RtcB OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rtcB PE=3 SV=1
Length = 482
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R AS ++V EEAP +YK+V +VV H GI+ ++RP+ V KG
Sbjct: 437 RAASLRVVAEEAPGAYKSVDNVVQVVHEAGIANLVARMRPMGVAKG 482
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 69 SKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
S+EGQ Y +M AAANFAW NR +T R+
Sbjct: 277 SEEGQQYFSAMKAAANFAWANRQMITHWVRE 307
>sp|Q8TUS2|RTCB_METKA tRNA-splicing ligase RtcB OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rtcB PE=1 SV=1
Length = 988
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
+ AS +V EEAP +YK+V +VV GIS +LRP+ V+KG
Sbjct: 943 KAASMPVVAEEAPPAYKDVDEVVRAVAEAGISDPVVRLRPIGVVKG 988
>sp|Q9YB37|RTCB_AERPE tRNA-splicing ligase RtcB OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rtcB PE=3
SV=2
Length = 481
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R ++ V+EE PE+YK+V V HAVGI + ++RP+ V KG
Sbjct: 436 RASNRATVVEEMPEAYKDVDRVAQVAHAVGIGRLVARMRPIGVTKG 481
>sp|P71930|RTCB_MYCTU RNA-splicing ligase RtcB OS=Mycobacterium tuberculosis GN=rtcB PE=2
SV=5
Length = 432
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 387 RGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
>sp|P59975|RTCB_MYCBO RNA-splicing ligase RtcB OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rtcB PE=3 SV=1
Length = 432
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 387 RGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
>sp|O27634|RTCB_METTH tRNA-splicing ligase RtcB OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rtcB PE=3 SV=2
Length = 482
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R S +V EEAP +YK+V VV T H GIS+ ++ P+ V KG
Sbjct: 437 RATSMPVVAEEAPGAYKDVDVVVRTAHETGISRLVARMLPLGVAKG 482
>sp|O59245|RTCB_PYRHO tRNA-splicing ligase RtcB OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rtcB PE=1 SV=1
Length = 871
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 69 SKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
S+EGQ Y +M AAANFAW NR +T R+
Sbjct: 665 SEEGQRYFSAMKAAANFAWANRQMITHWVRE 695
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R AS ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 826 RAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 871
>sp|Q8U0H4|RTCB_PYRFU tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rtcB PE=3 SV=1
Length = 970
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 69 SKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
S+EGQ Y +M AAANFAW NR +T R+
Sbjct: 764 SEEGQRYFSAMKAAANFAWANRQMITHWVRE 794
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R AS ++V EEAP +YKNV +VV GI+K ++RP+ V KG
Sbjct: 925 RAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 970
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.129 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,731,981
Number of Sequences: 539616
Number of extensions: 1125587
Number of successful extensions: 2419
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2316
Number of HSP's gapped (non-prelim): 105
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)