Query psy10980
Match_columns 105
No_of_seqs 123 out of 613
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 23:21:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03073 release_rtcB release 99.8 4.3E-19 9.2E-24 142.7 7.4 64 40-103 140-218 (356)
2 PRK09588 hypothetical protein; 99.8 1.3E-18 2.8E-23 140.8 7.4 64 40-103 151-229 (376)
3 PF01139 RtcB: tRNA-splicing l 99.8 1.3E-18 2.9E-23 142.2 7.0 64 40-103 177-270 (420)
4 COG1690 RtcB Uncharacterized c 99.5 1.7E-14 3.6E-19 118.8 7.2 64 40-103 197-289 (432)
5 KOG3833|consensus 99.5 2.4E-14 5.3E-19 115.6 7.2 64 40-103 241-334 (505)
6 PRK09588 hypothetical protein; 98.9 2E-10 4.4E-15 93.3 0.4 47 5-51 328-374 (376)
7 PF01139 RtcB: tRNA-splicing l 98.7 7.9E-10 1.7E-14 90.8 -1.7 46 5-50 375-420 (420)
8 TIGR03073 release_rtcB release 98.6 1.3E-08 2.9E-13 82.2 0.7 40 5-44 317-356 (356)
9 KOG3833|consensus 98.3 1.7E-07 3.6E-12 76.3 1.2 46 5-50 460-505 (505)
10 COG1690 RtcB Uncharacterized c 97.6 2E-05 4.3E-10 65.4 0.5 40 11-50 393-432 (432)
11 COG5217 BIM1 Microtubule-bindi 33.1 50 0.0011 26.8 3.1 62 21-85 127-190 (342)
12 TIGR00074 hypC_hupF hydrogenas 32.2 40 0.00086 21.7 2.0 28 53-82 41-71 (76)
13 PF14051 Requiem_N: N-terminal 30.9 77 0.0017 20.5 3.1 21 74-97 5-25 (74)
14 PF10720 DUF2515: Protein of u 29.4 15 0.00033 29.7 -0.4 10 55-64 224-233 (308)
15 PRK10413 hydrogenase 2 accesso 28.6 68 0.0015 20.9 2.7 28 52-81 47-74 (82)
16 TIGR01728 SsuA_fam ABC transpo 26.5 1.5E+02 0.0033 21.4 4.5 37 66-102 194-230 (288)
17 PF11181 YflT: Heat induced st 25.6 1.1E+02 0.0023 20.0 3.3 25 37-61 14-38 (103)
18 COG0298 HypC Hydrogenase matur 25.1 40 0.00088 22.3 1.1 27 52-80 43-69 (82)
19 COG5088 SOH1 Rad5p-binding pro 24.6 45 0.00098 23.1 1.3 15 66-80 41-55 (114)
20 PF05347 Complex1_LYR: Complex 21.4 1.2E+02 0.0026 17.3 2.6 32 73-104 5-37 (59)
21 cd01255 PH_TIAM TIAM Pleckstri 20.7 68 0.0015 23.6 1.6 39 40-78 103-149 (160)
22 KOG3181|consensus 20.6 57 0.0012 25.3 1.2 19 40-61 145-163 (244)
23 cd01251 PH_centaurin_alpha Cen 20.3 1.8E+02 0.004 18.9 3.6 32 53-84 69-101 (103)
No 1
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=99.78 E-value=4.3e-19 Score=142.74 Aligned_cols=64 Identities=22% Similarity=0.122 Sum_probs=58.6
Q ss_pred hhccccccccccEEEEEecCcc---------------cCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10980 40 FKLRPVAVIKGQIKSWYLCGKA---------------ESFLRINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILTS 103 (105)
Q Consensus 40 ~~~~plgv~kg~v~l~vHSGSR---------------~~~l~~~s~eg~~Yl~~m~~A~~fA~~NR~~ia~~i~~~l~~ 103 (105)
..++.+|+.+|++||||||||| ..++|.+|+++++||.+|++|+|||++||++|+++++++|..
T Consensus 140 ~~a~~~Gl~~g~v~l~iHSGSRglG~~i~~~~~~~~~~~~l~~~s~~g~~Yl~~m~~A~~~A~~NR~~i~~~v~~~l~~ 218 (356)
T TIGR03073 140 DALATLGLDAKQLLLLVHSGSRGLGQAILRRHVDYFGHNGLPEGSPAAAAYLAQHDDALRFAKANRQLIARRILQRLRA 218 (356)
T ss_pred HHHHHcCCCCCcEEEEEecCCchhHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999 135789999999999999999999999999999999999974
No 2
>PRK09588 hypothetical protein; Reviewed
Probab=99.76 E-value=1.3e-18 Score=140.82 Aligned_cols=64 Identities=20% Similarity=0.122 Sum_probs=58.1
Q ss_pred hhccccccccccEEEEEecCcc-------c--------CcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10980 40 FKLRPVAVIKGQIKSWYLCGKA-------E--------SFLRINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILTS 103 (105)
Q Consensus 40 ~~~~plgv~kg~v~l~vHSGSR-------~--------~~l~~~s~eg~~Yl~~m~~A~~fA~~NR~~ia~~i~~~l~~ 103 (105)
..++.+|+.+|++||||||||| . ..+|++|+++++||.+|++|+|||++||++|+++++++|..
T Consensus 151 ~~a~~~gl~~g~v~l~vHsGSRglG~~v~~~~~~~~~~~~l~~~s~~g~~Yl~~m~~A~~~A~~NR~~i~~~i~~~l~~ 229 (376)
T PRK09588 151 ELFALLGLDADQLLLLVHSGSRGLGQAILRRHVASFGHNGLPEGSDDALAYLAEHDDALAFARANRQLIARRILQQLRA 229 (376)
T ss_pred HHHHHcCCCCCcEEEEEecCCchhHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999 1 22789999999999999999999999999999999999864
No 3
>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0682 belong to this family.; PDB: 2EPG_B 1UC2_B.
Probab=99.75 E-value=1.3e-18 Score=142.18 Aligned_cols=64 Identities=31% Similarity=0.455 Sum_probs=53.8
Q ss_pred hhcccccccc-ccEEEEEecCcc-----------------------------cCcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy10980 40 FKLRPVAVIK-GQIKSWYLCGKA-----------------------------ESFLRINSKEGQDYLKSMAAAANFAWVN 89 (105)
Q Consensus 40 ~~~~plgv~k-g~v~l~vHSGSR-----------------------------~~~l~~~s~eg~~Yl~~m~~A~~fA~~N 89 (105)
..+..+|+.+ |++||||||||| +.|+|++|+++++||.+|++|+|||++|
T Consensus 177 ~~a~~~gl~~~g~v~l~vHsGSRglG~~i~~~~~~~a~~~~~~~~~~~~~~~l~~l~~~s~~~~~Yl~~m~~A~~~A~~N 256 (420)
T PF01139_consen 177 EAANALGLDENGQVWLMVHSGSRGLGHQIAEYYIKKAKEQMKKYGIKLPDKDLAYLPLDSEEGQDYLKAMNAAQNYAFAN 256 (420)
T ss_dssp HHHHHCT--T-TEEEEEEEE--CCHHHHHHHHHHHHHHCCHHHCT---SSCCG--EETTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCccccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5566788988 999999999999 3578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy10980 90 RSSMTFLCRQILTS 103 (105)
Q Consensus 90 R~~ia~~i~~~l~~ 103 (105)
|++|+.+++++|.+
T Consensus 257 R~~i~~~i~~~l~~ 270 (420)
T PF01139_consen 257 RQLIAHRILEALRD 270 (420)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
No 4
>COG1690 RtcB Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.7e-14 Score=118.75 Aligned_cols=64 Identities=31% Similarity=0.434 Sum_probs=58.0
Q ss_pred hhccccccccccEEEEEecCcc-----------------------------cCcccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy10980 40 FKLRPVAVIKGQIKSWYLCGKA-----------------------------ESFLRINSKEGQDYLKSMAAAANFAWVNR 90 (105)
Q Consensus 40 ~~~~plgv~kg~v~l~vHSGSR-----------------------------~~~l~~~s~eg~~Yl~~m~~A~~fA~~NR 90 (105)
.-.+..|+..+++|+|+||||| ++++|.+|+++++|+.+|++|+|||++||
T Consensus 197 ~~a~~~gl~~~~v~vm~hsGSrg~G~qi~~~~~~~~~~~~~~~~~~~~~~~la~~~~~s~e~~~y~~am~~A~~~a~~Nr 276 (432)
T COG1690 197 EAAAPMGLAEGTVWVMIHTGSRGLGHQIATDFVRLAEQAMGRYGIAVPDRQLACVPVDSEDGQAYLAAMAAAANYARANR 276 (432)
T ss_pred hhHhhcCcccccEEEEEEeccccccchhHHHHHHHHHHhhhhhcccCcchhhhccccCCHHHHHHHHHHHHHHHHHHHhH
Confidence 5667788888999999999999 34569999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy10980 91 SSMTFLCRQILTS 103 (105)
Q Consensus 91 ~~ia~~i~~~l~~ 103 (105)
++|++++++.|..
T Consensus 277 ~~i~~~~~~~~~~ 289 (432)
T COG1690 277 QLITERVRRALQE 289 (432)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 5
>KOG3833|consensus
Probab=99.52 E-value=2.4e-14 Score=115.60 Aligned_cols=64 Identities=55% Similarity=0.714 Sum_probs=58.5
Q ss_pred hhccccccc-cccEEEEEecCcc-----------------------------cCcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy10980 40 FKLRPVAVI-KGQIKSWYLCGKA-----------------------------ESFLRINSKEGQDYLKSMAAAANFAWVN 89 (105)
Q Consensus 40 ~~~~plgv~-kg~v~l~vHSGSR-----------------------------~~~l~~~s~eg~~Yl~~m~~A~~fA~~N 89 (105)
..+.-.|+. ||||++||||||| ++..+++|.|+++||..|..|+||||.|
T Consensus 241 ~~A~~MGI~~kGQvvVMiH~GSRGlGHqVatdsLv~Mekamard~i~~nd~QLACarinS~Egq~Yl~~MaaAaNfAwVN 320 (505)
T KOG3833|consen 241 EAASKMGIDEKGQVVVMIHSGSRGLGHQVATDSLVKMEKAMARDKIVVNDRQLACARINSVEGQDYLKGMAAAANFAWVN 320 (505)
T ss_pred hhhhhcCcCCCCcEEEEEecCCccccchhhHHHHHHHHHhhhccceeecchhhcccccCChhhHHHHHHHHhhhhhhhhh
Confidence 677888995 9999999999999 3345999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy10980 90 RSSMTFLCRQILTS 103 (105)
Q Consensus 90 R~~ia~~i~~~l~~ 103 (105)
|..|....+++|..
T Consensus 321 Rs~~Tf~~RqAF~K 334 (505)
T KOG3833|consen 321 RSSMTFLTRQAFAK 334 (505)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
No 6
>PRK09588 hypothetical protein; Reviewed
Probab=98.92 E-value=2e-10 Score=93.26 Aligned_cols=47 Identities=32% Similarity=0.536 Sum_probs=44.6
Q ss_pred cccCCccccccCcccccChhhhhhccccccchhhhhhcccccccccc
Q psy10980 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGQ 51 (105)
Q Consensus 5 ~~~~~~~~~eeaP~aYk~~~~Vv~~~~~~~l~~~v~~~~plgv~kg~ 51 (105)
.|++.+.+.||||+||||+++||+.+++.||+++|++++|++++||.
T Consensus 328 ~~~~~~~~~dEaP~AYKdi~~Vi~~~~~~gl~~vva~l~Pl~~~Kg~ 374 (376)
T PRK09588 328 ICRDRQLIFEEAPEAYKSIESVIQDLVQAGLITPVARLRPVLTYKTS 374 (376)
T ss_pred EECCCCcccccChhccCCHHHHHHhhhcCCceeEEEEEEEEEEEeCC
Confidence 56888899999999999999999999999999999999999999985
No 7
>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0682 belong to this family.; PDB: 2EPG_B 1UC2_B.
Probab=98.75 E-value=7.9e-10 Score=90.78 Aligned_cols=46 Identities=30% Similarity=0.654 Sum_probs=38.9
Q ss_pred cccCCccccccCcccccChhhhhhccccccchhhhhhccccccccc
Q psy10980 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50 (105)
Q Consensus 5 ~~~~~~~~~eeaP~aYk~~~~Vv~~~~~~~l~~~v~~~~plgv~kg 50 (105)
.|.+.+.+.||||+||||+++||+.+++.||+++|++++|++++||
T Consensus 375 ~~~~~~~~~dEaP~AYK~i~~Vi~~~~~~~l~~~v~~l~Pi~~~Kg 420 (420)
T PF01139_consen 375 ICSDKELLLDEAPMAYKDIEEVIDDQEEAGLAEVVARLKPILNIKG 420 (420)
T ss_dssp EES-HHHHHHT-GGGB--HHHHHHHHHHCTSSEEEEEEEEEEEEE-
T ss_pred EEecCCCchhhChhhcCCHHHHHHHHhhCCCeeEEEEEEEEEEEeC
Confidence 4677889999999999999999999999999999999999999986
No 8
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=98.57 E-value=1.3e-08 Score=82.20 Aligned_cols=40 Identities=35% Similarity=0.590 Sum_probs=38.1
Q ss_pred cccCCccccccCcccccChhhhhhccccccchhhhhhccc
Q psy10980 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRP 44 (105)
Q Consensus 5 ~~~~~~~~~eeaP~aYk~~~~Vv~~~~~~~l~~~v~~~~p 44 (105)
.|++.+.+.||||+||||+++||+.+++.||+++|++++|
T Consensus 317 ~~~~~~~~~dEaP~AYKdi~~Vi~~~~~~gl~~~va~l~P 356 (356)
T TIGR03073 317 ICEDRQLIYEEAPEAYKSIDSVVGALLQAGLIKVVARLKP 356 (356)
T ss_pred EECCCCcccccChhccCCHHHHHHhhhhCCceeEEEEEcC
Confidence 6788889999999999999999999999999999999998
No 9
>KOG3833|consensus
Probab=98.33 E-value=1.7e-07 Score=76.34 Aligned_cols=46 Identities=87% Similarity=1.255 Sum_probs=44.2
Q ss_pred cccCCccccccCcccccChhhhhhccccccchhhhhhccccccccc
Q psy10980 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50 (105)
Q Consensus 5 ~~~~~~~~~eeaP~aYk~~~~Vv~~~~~~~l~~~v~~~~plgv~kg 50 (105)
++.+.+++.||||+.|||+.+||+.|...|+.+.+.+++|+.|+||
T Consensus 460 R~aSpklvmEEAPesYKdVtdVVdtc~~aGiskK~~klrPiaVIKG 505 (505)
T KOG3833|consen 460 RVASPKLVMEEAPESYKDVTDVVDTCDAAGISKKAIKLRPIAVIKG 505 (505)
T ss_pred EeCCccchhhhCchhhhhHHHHhhhhhhcccchhhhcccceeeecC
Confidence 5789999999999999999999999999999999999999999986
No 10
>COG1690 RtcB Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=2e-05 Score=65.41 Aligned_cols=40 Identities=45% Similarity=0.858 Sum_probs=37.9
Q ss_pred cccccCcccccChhhhhhccccccchhhhhhccccccccc
Q psy10980 11 LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50 (105)
Q Consensus 11 ~~~eeaP~aYk~~~~Vv~~~~~~~l~~~v~~~~plgv~kg 50 (105)
.+.||||+|||++++||+.+...+++..|++++|+++.||
T Consensus 393 ~~~eEap~ayK~vd~Vv~~~~~~~lv~~v~r~~pv~~~kg 432 (432)
T COG1690 393 GVIDEAPEAYKDIDDVIEASHQSGLVEVVARLRPVGVVKG 432 (432)
T ss_pred eeeeecccccccHHHHHHHHHhcCceeeeeeeeeeEecCC
Confidence 4899999999999999999999999999999999999875
No 11
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=33.10 E-value=50 Score=26.84 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=35.5
Q ss_pred cChhhhhhccccccchhhhhhcccc--ccccccEEEEEecCcccCcccCCCHHHHHHHHHHHHHHHH
Q psy10980 21 KNVTDVVDTCHAVGISKKTFKLRPV--AVIKGQIKSWYLCGKAESFLRINSKEGQDYLKSMAAAANF 85 (105)
Q Consensus 21 k~~~~Vv~~~~~~~l~~~v~~~~pl--gv~kg~v~l~vHSGSR~~~l~~~s~eg~~Yl~~m~~A~~f 85 (105)
|+.++++.| ..++.-+....+.+ |+-.-.....+||---..+.. ++...++||.+|+.||+|
T Consensus 127 ~~tr~~~~~--~rs~~~p~sa~r~~s~G~~s~~sl~t~hss~~~N~v~-~ta~t~~~Lra~qa~Qe~ 190 (342)
T COG5217 127 KSTRELIEW--IRSLGIPISAIRELSKGVASCKSLSTIHSSFPQNFVK-NTAGTHDYLRAMQACQEF 190 (342)
T ss_pred chHHHHHhh--hhhcCCchhhhhhhccCcccchhhhhhhccccccccc-CcchhHHHHHHHHHHHHH
Confidence 677889998 44454443322322 332223445677742233322 334557999999999876
No 12
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=32.16 E-value=40 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=16.2
Q ss_pred EEEEecCcccCcccCCCHHHH---HHHHHHHHH
Q psy10980 53 KSWYLCGKAESFLRINSKEGQ---DYLKSMAAA 82 (105)
Q Consensus 53 ~l~vHSGSR~~~l~~~s~eg~---~Yl~~m~~A 82 (105)
|++||.|.-..- ++.++++ ++|+++..+
T Consensus 41 ~VLVH~G~Ai~~--ide~eA~e~l~~l~el~~~ 71 (76)
T TIGR00074 41 YVLVHVGFAISV--LDEEEARETLDALQELFDA 71 (76)
T ss_pred EEEEecChhhhh--CCHHHHHHHHHHHHHHHHH
Confidence 899999965443 3334554 445544433
No 13
>PF14051 Requiem_N: N-terminal domain of DPF2/REQ.
Probab=30.93 E-value=77 Score=20.51 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10980 74 DYLKSMAAAANFAWVNRSSMTFLC 97 (105)
Q Consensus 74 ~Yl~~m~~A~~fA~~NR~~ia~~i 97 (105)
.|.++|..|-+| |.+++.++-
T Consensus 5 ~Yke~lenc~~~---NsRl~~ERr 25 (74)
T PF14051_consen 5 FYKEALENCSNY---NSRLCAERR 25 (74)
T ss_pred HHHHHHHHHHHH---HHHHHHHHh
Confidence 699999999998 888888773
No 14
>PF10720 DUF2515: Protein of unknown function (DUF2515); InterPro: IPR019658 This family is conserved in Firmicutes. Several members are annotated as YppC. The function is not known.
Probab=29.43 E-value=15 Score=29.69 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=7.3
Q ss_pred EEecCcccCc
Q psy10980 55 WYLCGKAESF 64 (105)
Q Consensus 55 ~vHSGSR~~~ 64 (105)
.-|||||.+|
T Consensus 224 ~pHTGSR~DY 233 (308)
T PF10720_consen 224 VPHTGSRADY 233 (308)
T ss_pred CCCCCCHHHH
Confidence 4699999444
No 15
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=28.64 E-value=68 Score=20.91 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=18.5
Q ss_pred EEEEEecCcccCcccCCCHHHHHHHHHHHH
Q psy10980 52 IKSWYLCGKAESFLRINSKEGQDYLKSMAA 81 (105)
Q Consensus 52 v~l~vHSGSR~~~l~~~s~eg~~Yl~~m~~ 81 (105)
=|++||.|--.. .++.+++++-++.++.
T Consensus 47 DyVLVHaGfAi~--~ideeeA~etl~~l~e 74 (82)
T PRK10413 47 QWVLVHVGFAMS--IIDEDEAKATLDALRQ 74 (82)
T ss_pred CEEEEecchhhh--hCCHHHHHHHHHHHHH
Confidence 388999995433 4455777776666553
No 16
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=26.50 E-value=1.5e+02 Score=21.37 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=30.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10980 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILT 102 (105)
Q Consensus 66 ~~~s~eg~~Yl~~m~~A~~fA~~NR~~ia~~i~~~l~ 102 (105)
.-+.+..+++++++..|.+|...|+...+..+.+.+.
T Consensus 194 ~~~p~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 230 (288)
T TIGR01728 194 EAHPEQVQRVLKVLVKARKWAEENPEESAKILAKELG 230 (288)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 3455677899999999999999999888877776543
No 17
>PF11181 YflT: Heat induced stress protein YflT
Probab=25.57 E-value=1.1e+02 Score=20.05 Aligned_cols=25 Identities=8% Similarity=-0.113 Sum_probs=21.8
Q ss_pred hhhhhccccccccccEEEEEecCcc
Q psy10980 37 KKTFKLRPVAVIKGQIKSWYLCGKA 61 (105)
Q Consensus 37 ~~v~~~~plgv~kg~v~l~vHSGSR 61 (105)
..|..|+.-|..+.+|+|+-|...+
T Consensus 14 ~~I~~L~~~Gy~~ddI~Vva~d~~~ 38 (103)
T PF11181_consen 14 SAIEELKAQGYSEDDIYVVAKDKDR 38 (103)
T ss_pred HHHHHHHHcCCCcccEEEEEcCchH
Confidence 3578899999999999999998877
No 18
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.14 E-value=40 Score=22.28 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=17.5
Q ss_pred EEEEEecCcccCcccCCCHHHHHHHHHHH
Q psy10980 52 IKSWYLCGKAESFLRINSKEGQDYLKSMA 80 (105)
Q Consensus 52 v~l~vHSGSR~~~l~~~s~eg~~Yl~~m~ 80 (105)
=|++||+|=-.. -++.+++++=|++..
T Consensus 43 dyVLVHvGfAi~--~idEeeAketle~l~ 69 (82)
T COG0298 43 DYVLVHVGFAMS--KIDEEEAKETLEALQ 69 (82)
T ss_pred CEEEEEeeEEEe--ecCHHHHHHHHHHHH
Confidence 488999994432 345677776666544
No 19
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=24.60 E-value=45 Score=23.13 Aligned_cols=15 Identities=27% Similarity=0.405 Sum_probs=12.9
Q ss_pred cCCCHHHHHHHHHHH
Q psy10980 66 RINSKEGQDYLKSMA 80 (105)
Q Consensus 66 ~~~s~eg~~Yl~~m~ 80 (105)
...||++.+||+-|.
T Consensus 41 ~fese~F~~YL~YlE 55 (114)
T COG5088 41 IFESENFKNYLKYLE 55 (114)
T ss_pred hhcCHHHHHHHHHHH
Confidence 668999999999875
No 20
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=21.39 E-value=1.2e+02 Score=17.31 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q psy10980 73 QDYLKSMAAAANFAWVN-RSSMTFLCRQILTSN 104 (105)
Q Consensus 73 ~~Yl~~m~~A~~fA~~N-R~~ia~~i~~~l~~~ 104 (105)
.-|-.-+..|..|-..+ |..+...|++.|++|
T Consensus 5 ~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n 37 (59)
T PF05347_consen 5 SLYRQLLRAARSFPDDSEREYIRAEIRQEFRKN 37 (59)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc
Confidence 35777777777777777 899999999999877
No 21
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=20.69 E-value=68 Score=23.61 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=24.1
Q ss_pred hhccccccccccEEEEEecCcccCc-------ccCCCHHHH-HHHHH
Q psy10980 40 FKLRPVAVIKGQIKSWYLCGKAESF-------LRINSKEGQ-DYLKS 78 (105)
Q Consensus 40 ~~~~plgv~kg~v~l~vHSGSR~~~-------l~~~s~eg~-~Yl~~ 78 (105)
....+-+.....+|-+||++|-... |--.++|.+ ++|+.
T Consensus 103 R~~n~ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~ 149 (160)
T cd01255 103 RASSAADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKT 149 (160)
T ss_pred ecCCCcCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHH
Confidence 3344456677779999999998222 333556654 44443
No 22
>KOG3181|consensus
Probab=20.56 E-value=57 Score=25.27 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=14.1
Q ss_pred hhccccccccccEEEEEecCcc
Q psy10980 40 FKLRPVAVIKGQIKSWYLCGKA 61 (105)
Q Consensus 40 ~~~~plgv~kg~v~l~vHSGSR 61 (105)
.|++.+-...| +|||||--
T Consensus 145 qRAKsmKF~DG---~mIhSG~p 163 (244)
T KOG3181|consen 145 QRAKSMKFVDG---LMIHSGQP 163 (244)
T ss_pred hhhhccccccc---eEEecCCc
Confidence 67777666665 89999954
No 23
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=20.31 E-value=1.8e+02 Score=18.89 Aligned_cols=32 Identities=0% Similarity=0.142 Sum_probs=25.2
Q ss_pred EEEEecCcccCcccCCCH-HHHHHHHHHHHHHH
Q psy10980 53 KSWYLCGKAESFLRINSK-EGQDYLKSMAAAAN 84 (105)
Q Consensus 53 ~l~vHSGSR~~~l~~~s~-eg~~Yl~~m~~A~~ 84 (105)
.+-|++.+|.-++..+|+ +.++.++++..+++
T Consensus 69 ~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 69 GVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred eEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 788999999777766665 67789999888764
Done!