Query psy10980
Match_columns 105
No_of_seqs 123 out of 613
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 23:22:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2epg_A Hypothetical protein TT 99.8 3.3E-20 1.1E-24 153.0 7.0 64 40-103 229-321 (487)
2 4dwr_B PHO HYP2 intein, tRNA-s 99.8 6.1E-20 2.1E-24 151.2 7.4 64 40-103 217-309 (487)
3 4dwr_B PHO HYP2 intein, tRNA-s 98.8 2.2E-10 7.6E-15 94.4 -1.0 46 6-51 437-482 (487)
4 2epg_A Hypothetical protein TT 98.8 3.1E-10 1E-14 93.7 -1.7 45 6-50 443-487 (487)
5 1v5p_A Pleckstrin homology dom 28.7 43 0.0015 21.6 2.8 35 49-83 84-119 (126)
6 3sja_C Golgi to ER traffic pro 25.6 34 0.0012 20.7 1.7 10 83-92 32-41 (65)
7 3ix1_A N-formyl-4-amino-5-amin 25.0 95 0.0032 21.8 4.3 33 68-100 203-235 (302)
8 4esw_A Pyrimidine biosynthesis 23.0 1.3E+02 0.0045 21.8 4.8 36 66-101 214-249 (342)
9 3ehu_C Corticoliberin; G prote 21.9 40 0.0014 16.1 1.2 11 83-93 7-17 (21)
10 3ksx_A Nitrate transport prote 21.2 1.7E+02 0.0058 20.7 5.1 33 68-100 224-256 (324)
No 1
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus}
Probab=99.80 E-value=3.3e-20 Score=152.98 Aligned_cols=64 Identities=36% Similarity=0.497 Sum_probs=59.0
Q ss_pred hhccccccccccEEEEEecCcc-----------------------------cCcccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy10980 40 FKLRPVAVIKGQIKSWYLCGKA-----------------------------ESFLRINSKEGQDYLKSMAAAANFAWVNR 90 (105)
Q Consensus 40 ~~~~plgv~kg~v~l~vHSGSR-----------------------------~~~l~~~s~eg~~Yl~~m~~A~~fA~~NR 90 (105)
..++.+|+.+|+|||||||||| ++|+|++|++|++||.+|++|+|||++||
T Consensus 229 ~~a~~~Gl~~g~v~lmiHSGSRglG~qIa~~~~~~a~~~~~~~~i~~pd~~La~l~~~s~eg~~Yl~am~~A~nyA~~NR 308 (487)
T 2epg_A 229 EAALAFGLFKGQVTVLIHTGSRGLGHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANR 308 (487)
T ss_dssp HHHHHHTCCTTEEEEEEEECCHHHHHHHHHHHHHHHHTTHHHHTCCCSSGGGCCEETTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCcEEEEEecCCchhHHHHHHHHHHHHHHHHHhcCCCCCCccceeEeCCCHHHHHHHHHHHHHHHHHHHhH
Confidence 4567789999999999999999 36789999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy10980 91 SSMTFLCRQILTS 103 (105)
Q Consensus 91 ~~ia~~i~~~l~~ 103 (105)
++|+++++++|.+
T Consensus 309 ~~i~~~v~~~~~~ 321 (487)
T 2epg_A 309 QLIAHFVREAFEK 321 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999963
No 2
>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A*
Probab=99.80 E-value=6.1e-20 Score=151.25 Aligned_cols=64 Identities=31% Similarity=0.474 Sum_probs=59.3
Q ss_pred hhccccccccccEEEEEecCcc-----------------------------cCcccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy10980 40 FKLRPVAVIKGQIKSWYLCGKA-----------------------------ESFLRINSKEGQDYLKSMAAAANFAWVNR 90 (105)
Q Consensus 40 ~~~~plgv~kg~v~l~vHSGSR-----------------------------~~~l~~~s~eg~~Yl~~m~~A~~fA~~NR 90 (105)
..++.+|+.+|+|||||||||| +.++|++|++|++||.+|++|+|||++||
T Consensus 217 ~~a~~~Gl~~g~v~lmiHSGSRglG~~Ia~~~~~~a~~~~~~~~~~~pd~~la~~~~~s~eg~~Yl~am~~A~~yA~~NR 296 (487)
T 4dwr_B 217 EVAKAYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANR 296 (487)
T ss_dssp HHHHHTTCCTTBEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHTCCCCSTTCCCEETTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCcEEEEEECCCCcccHHHHHHHHHHHHHHHHHcCCCCCChhhccccCCCHHHHHHHHHHHHHHHHHHHhH
Confidence 5567899999999999999999 45789999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy10980 91 SSMTFLCRQILTS 103 (105)
Q Consensus 91 ~~ia~~i~~~l~~ 103 (105)
++|+++++++|++
T Consensus 297 ~~i~~~v~~~~~~ 309 (487)
T 4dwr_B 297 QMITHWVRESFQE 309 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 3
>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A*
Probab=98.84 E-value=2.2e-10 Score=94.39 Aligned_cols=46 Identities=46% Similarity=0.715 Sum_probs=42.3
Q ss_pred ccCCccccccCcccccChhhhhhccccccchhhhhhcccccccccc
Q psy10980 6 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGQ 51 (105)
Q Consensus 6 ~~~~~~~~eeaP~aYk~~~~Vv~~~~~~~l~~~v~~~~plgv~kg~ 51 (105)
|.+.+.+.||||+|||||++||+.+.+.||+++|++++|++++||-
T Consensus 437 ~~~~~~v~dEaP~AYKdId~Vi~~~~~~gLv~vVa~LkPv~~iKGg 482 (487)
T 4dwr_B 437 AASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKGA 482 (487)
T ss_dssp CSCSHHHHHTCGGGBCCHHHHHHHHHHHTSSEEEEEEEEEEEECCC
T ss_pred ECCCCcCcccChhccCCHHHHHHHHHhcCCeEEEEEEEEEEEEecC
Confidence 4566778999999999999999999999999999999999999974
No 4
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus}
Probab=98.79 E-value=3.1e-10 Score=93.68 Aligned_cols=45 Identities=47% Similarity=0.720 Sum_probs=28.1
Q ss_pred ccCCccccccCcccccChhhhhhccccccchhhhhhccccccccc
Q psy10980 6 VASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50 (105)
Q Consensus 6 ~~~~~~~~eeaP~aYk~~~~Vv~~~~~~~l~~~v~~~~plgv~kg 50 (105)
+.+.+++.||||+|||||++||+.+++.||+++|++++|++++||
T Consensus 443 ~~~~~~~~dEaP~AYKdId~Vv~~~~~~gLv~vVa~L~Pv~~iKG 487 (487)
T 2epg_A 443 AATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 487 (487)
T ss_dssp CC---------------CCHHHHHHHHHTSCEEEEEEEEEEEEEC
T ss_pred ECCCCcCcccChhccCCHHHHHHhhhhCCCEEEEEEEEEEEEEcC
Confidence 345678899999999999999999999999999999999999996
No 5
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=28.74 E-value=43 Score=21.60 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=26.0
Q ss_pred cccEEEEEecCcccCcccCCCH-HHHHHHHHHHHHH
Q psy10980 49 KGQIKSWYLCGKAESFLRINSK-EGQDYLKSMAAAA 83 (105)
Q Consensus 49 kg~v~l~vHSGSR~~~l~~~s~-eg~~Yl~~m~~A~ 83 (105)
+.+..+.||+++|.-|+..+|+ +.++.++++..|.
T Consensus 84 ~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~ 119 (126)
T 1v5p_A 84 KTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119 (126)
T ss_dssp SCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3446678999999877766655 6788988887654
No 6
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.62 E-value=34 Score=20.72 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=8.7
Q ss_pred HHHHHHHHHH
Q psy10980 83 ANFAWVNRSS 92 (105)
Q Consensus 83 ~~fA~~NR~~ 92 (105)
+.||+.||++
T Consensus 32 AKWaKL~Rk~ 41 (65)
T 3sja_C 32 AKWTKNNRKL 41 (65)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899999985
No 7
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=25.03 E-value=95 Score=21.78 Aligned_cols=33 Identities=3% Similarity=-0.068 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10980 68 NSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQI 100 (105)
Q Consensus 68 ~s~eg~~Yl~~m~~A~~fA~~NR~~ia~~i~~~ 100 (105)
+.+..+.+++++..|.+|+..|....+..+.+.
T Consensus 203 ~p~~v~~~~~a~~~a~~~~~~~p~e~~~~~~~~ 235 (302)
T 3ix1_A 203 SGEVLAAFWRAALKGYEWMVENPDEALNVLLTN 235 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 446778999999999999999998887777654
No 8
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=23.00 E-value=1.3e+02 Score=21.78 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=29.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10980 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQIL 101 (105)
Q Consensus 66 ~~~s~eg~~Yl~~m~~A~~fA~~NR~~ia~~i~~~l 101 (105)
.-+.+..+.+++++.-|.+|+..|.+.-+..+.+..
T Consensus 214 ~~~Pe~v~~fl~A~~ka~~~~~~nP~eA~~i~~~~~ 249 (342)
T 4esw_A 214 AENPQAVKKFLKAIKRATDYMLAHPREAWAEYGNFK 249 (342)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHS
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhC
Confidence 335567789999999999999999988777666544
No 9
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=21.85 E-value=40 Score=16.13 Aligned_cols=11 Identities=45% Similarity=0.362 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q psy10980 83 ANFAWVNRSSM 93 (105)
Q Consensus 83 ~~fA~~NR~~i 93 (105)
..=|..||.+|
T Consensus 7 ~qQA~~NRk~m 17 (21)
T 3ehu_C 7 AQQAHSNRKLM 17 (26)
T ss_pred HHHHHHhHHHH
Confidence 34578899876
No 10
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=21.15 E-value=1.7e+02 Score=20.73 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10980 68 NSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQI 100 (105)
Q Consensus 68 ~s~eg~~Yl~~m~~A~~fA~~NR~~ia~~i~~~ 100 (105)
+.+..+.+++++..|..|+..|....+..+.+.
T Consensus 224 ~p~~~~~~~~a~~~a~~~~~~~p~e~~~~~~~~ 256 (324)
T 3ksx_A 224 WGPFVQQVMGTLNQADGLLERDRAGSIKTLAQV 256 (324)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 446778999999999999999998877776654
Done!