Your job contains 1 sequence.
>psy10980
MKDGRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGQIKSWYLCGK
AESFLRINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQILTSNH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10980
(105 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NYI3 - symbol:C1H22orf28 "Uncharacterized pro... 211 2.1e-16 1
FB|FBgn0032781 - symbol:CG9987 species:7227 "Drosophila m... 208 4.5e-16 1
ZFIN|ZDB-GENE-040426-2096 - symbol:zgc:76871 "zgc:76871" ... 205 9.5e-16 1
UNIPROTKB|Q561P3 - symbol:Q561P3 "tRNA-splicing ligase Rt... 205 9.5e-16 1
UNIPROTKB|Q5E9T9 - symbol:Q5E9T9 "tRNA-splicing ligase Rt... 205 9.5e-16 1
UNIPROTKB|Q9Y3I0 - symbol:C22orf28 "tRNA-splicing ligase ... 205 9.5e-16 1
UNIPROTKB|F2Z5V0 - symbol:C22orf28 "Uncharacterized prote... 205 9.5e-16 1
UNIPROTKB|Q19PY3 - symbol:Q19PY3 "tRNA-splicing ligase Rt... 205 9.5e-16 1
UNIPROTKB|A9CB42 - symbol:A9CB42 "tRNA-splicing ligase Rt... 205 9.5e-16 1
UNIPROTKB|Q4R6X4 - symbol:QtsA-16939 "tRNA-splicing ligas... 205 9.5e-16 1
MGI|MGI:106379 - symbol:D10Wsu52e "DNA segment, Chr 10, W... 205 9.5e-16 1
RGD|1303261 - symbol:LOC362855 "P55" species:10116 "Rattu... 205 9.5e-16 1
WB|WBGene00008877 - symbol:F16A11.2 species:6239 "Caenorh... 204 1.2e-15 1
GENEDB_PFALCIPARUM|PF11_0068 - symbol:PF11_0068 "hypothet... 192 2.4e-14 1
UNIPROTKB|Q8IIU6 - symbol:PF11_0068 "tRNA-splicing ligase... 192 2.4e-14 1
DICTYBASE|DDB_G0278481 - symbol:iliN "UPF0027 family prot... 190 4.1e-14 1
UNIPROTKB|Q3Z899 - symbol:DET0823 "Putative uncharacteriz... 120 1.4e-06 1
TIGR_CMR|DET_0823 - symbol:DET_0823 "conserved hypothetic... 120 1.4e-06 1
UNIPROTKB|Q8ZY09 - symbol:rtcB "tRNA-splicing ligase RtcB... 113 7.7e-06 1
UNIPROTKB|Q8TUS2 - symbol:rtcB "tRNA-splicing ligase RtcB... 102 0.00029 1
UNIPROTKB|P71930 - symbol:rtcB "RNA-splicing ligase RtcB"... 95 0.00057 1
>UNIPROTKB|F1NYI3 [details] [associations]
symbol:C1H22orf28 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0003972 "RNA ligase (ATP) activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA] [GO:0017166
"vinculin binding" evidence=IEA] [GO:0072669 "tRNA-splicing ligase
complex" evidence=IEA] GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
GeneTree:ENSGT00390000015260 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AADN02006278 IPI:IPI00571823 Ensembl:ENSGALT00000020590
Uniprot:F1NYI3
Length = 507
Score = 211 (79.3 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 41/46 (89%), Positives = 43/46 (93%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCHA GISKK KLRP+AVIKG
Sbjct: 462 RVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG 507
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 299 RIASVEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 332
>FB|FBgn0032781 [details] [associations]
symbol:CG9987 species:7227 "Drosophila melanogaster"
[GO:0022008 "neurogenesis" evidence=IMP] GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0046872 GO:GO:0008033
GO:GO:0003972 eggNOG:COG1690 GeneTree:ENSGT00390000015260 KO:K14415
OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118
Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AY119213
RefSeq:NP_609965.1 UniGene:Dm.13521 ProteinModelPortal:Q9VIW7
SMR:Q9VIW7 IntAct:Q9VIW7 MINT:MINT-832367 STRING:Q9VIW7
PaxDb:Q9VIW7 PRIDE:Q9VIW7 EnsemblMetazoa:FBtr0081205 GeneID:35220
KEGG:dme:Dmel_CG9987 UCSC:CG9987-RA FlyBase:FBgn0032781
InParanoid:Q9VIW7 OrthoDB:EOG4G79DG PhylomeDB:Q9VIW7
GenomeRNAi:35220 NextBio:792444 Bgee:Q9VIW7 Uniprot:Q9VIW7
Length = 506
Score = 208 (78.3 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 40/46 (86%), Positives = 43/46 (93%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+VTDVVDTCHA GISKK K+RP+AVIKG
Sbjct: 461 RVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Score = 156 (60.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQDYLK+MAAAANFAWVNRSSMTFL RQ
Sbjct: 298 RINSVEGQDYLKAMAAAANFAWVNRSSMTFLTRQ 331
>ZFIN|ZDB-GENE-040426-2096 [details] [associations]
symbol:zgc:76871 "zgc:76871" species:7955 "Danio
rerio" [GO:0003972 "RNA ligase (ATP) activity" evidence=IEA;ISS]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISS] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] ZFIN:ZDB-GENE-040426-2096 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0072669 GO:GO:0006388
GO:GO:0003972 eggNOG:COG1690 GeneTree:ENSGT00390000015260
HOVERGEN:HBG081383 KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7
HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AL845512 EMBL:BC065987
IPI:IPI00770937 RefSeq:NP_998268.1 UniGene:Dr.89610
ProteinModelPortal:Q6NZS4 STRING:Q6NZS4 PRIDE:Q6NZS4
Ensembl:ENSDART00000111348 GeneID:406376 KEGG:dre:406376
InParanoid:Q6NZS4 NextBio:20817987 ArrayExpress:Q6NZS4 Bgee:Q6NZS4
Uniprot:Q6NZS4
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 145 (56.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S+EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RITSEEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>UNIPROTKB|Q561P3 [details] [associations]
symbol:Q561P3 "tRNA-splicing ligase RtcB homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003972 "RNA
ligase (ATP) activity" evidence=ISS] [GO:0006388 "tRNA splicing,
via endonucleolytic cleavage and ligation" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0072669
GO:GO:0006388 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 KO:K14415
OrthoDB:EOG4DFPN7 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
CTD:51493 EMBL:BC093459 RefSeq:NP_001025674.1 UniGene:Str.24196
ProteinModelPortal:Q561P3 STRING:Q561P3 PRIDE:Q561P3
Ensembl:ENSXETT00000025212 GeneID:595066 KEGG:xtr:595066
Xenbase:XB-GENE-974751 InParanoid:Q561P3 OMA:MAIEEKG Bgee:Q561P3
Uniprot:Q561P3
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 144 (55.7 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI+S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RISSAEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>UNIPROTKB|Q5E9T9 [details] [associations]
symbol:Q5E9T9 "tRNA-splicing ligase RtcB homolog"
species:9913 "Bos taurus" [GO:0001890 "placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0072669 "tRNA-splicing
ligase complex" evidence=ISS] [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017166 "vinculin binding"
evidence=IEA] GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0072669 GO:GO:0006388 GO:GO:0003972 EMBL:BT020831
EMBL:BC104498 IPI:IPI00700295 RefSeq:NP_001015631.1
UniGene:Bt.91477 ProteinModelPortal:Q5E9T9 STRING:Q5E9T9
PRIDE:Q5E9T9 Ensembl:ENSBTAT00000014699 GeneID:525106
KEGG:bta:525106 CTD:100928215 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 InParanoid:Q5E9T9
KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7 NextBio:20874099
HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 Uniprot:Q5E9T9
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>UNIPROTKB|Q9Y3I0 [details] [associations]
symbol:C22orf28 "tRNA-splicing ligase RtcB homolog"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017166 "vinculin binding" evidence=IPI] [GO:0007160
"cell-matrix adhesion" evidence=NAS] [GO:0034446 "substrate
adhesion-dependent cell spreading" evidence=NAS] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IDA]
[GO:0003972 "RNA ligase (ATP) activity" evidence=IDA] [GO:0072669
"tRNA-splicing ligase complex" evidence=IDA] GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 EMBL:CH471095 GO:GO:0007160
GO:GO:0034446 GO:GO:0072669 EMBL:AL021937 GO:GO:0006388
GO:GO:0003972 eggNOG:COG1690 HOVERGEN:HBG081383 KO:K14415
OMA:GRMLNAD OrthoDB:EOG4DFPN7 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AL050255 EMBL:AF161466 EMBL:AF155658 EMBL:CR457175
EMBL:CR456450 EMBL:AK312503 EMBL:BC000151 EMBL:BC002970
EMBL:BC010308 EMBL:BC016707 EMBL:AL137272 IPI:IPI00550689
PIR:T46344 RefSeq:NP_055121.1 UniGene:Hs.474643
ProteinModelPortal:Q9Y3I0 SMR:Q9Y3I0 IntAct:Q9Y3I0
MINT:MINT-4654730 STRING:Q9Y3I0 PhosphoSite:Q9Y3I0 DMDM:74753486
UCD-2DPAGE:Q9Y3I0 PaxDb:Q9Y3I0 PeptideAtlas:Q9Y3I0 PRIDE:Q9Y3I0
DNASU:51493 Ensembl:ENST00000216038 GeneID:51493 KEGG:hsa:51493
UCSC:uc003amm.2 CTD:51493 GeneCards:GC22M032783 HGNC:HGNC:26935
HPA:HPA001103 MIM:613901 neXtProt:NX_Q9Y3I0 PharmGKB:PA145149387
InParanoid:Q9Y3I0 PhylomeDB:Q9Y3I0 ChiTaRS:C22orf28
GenomeRNAi:51493 NextBio:55157 ArrayExpress:Q9Y3I0 Bgee:Q9Y3I0
CleanEx:HS_C22orf28 Genevestigator:Q9Y3I0
GermOnline:ENSG00000100220 Uniprot:Q9Y3I0
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>UNIPROTKB|F2Z5V0 [details] [associations]
symbol:C22orf28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072669 "tRNA-splicing ligase complex" evidence=IEA]
[GO:0017166 "vinculin binding" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003972 "RNA ligase (ATP)
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
GeneTree:ENSGT00390000015260 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:CU407156 ProteinModelPortal:F2Z5V0 SMR:F2Z5V0 PRIDE:F2Z5V0
Ensembl:ENSSSCT00000000167 ArrayExpress:F2Z5V0 Uniprot:F2Z5V0
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>UNIPROTKB|Q19PY3 [details] [associations]
symbol:Q19PY3 "tRNA-splicing ligase RtcB homolog"
species:9823 "Sus scrofa" [GO:0072669 "tRNA-splicing ligase
complex" evidence=ISS] [GO:0003972 "RNA ligase (ATP) activity"
evidence=ISS] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
eggNOG:COG1690 HOVERGEN:HBG081383 KO:K14415 HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:DQ508262 EMBL:DQ508263 RefSeq:NP_001116458.1
UniGene:Ssc.79842 STRING:Q19PY3 GeneID:733658 KEGG:ssc:733658
Uniprot:Q19PY3
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>UNIPROTKB|A9CB42 [details] [associations]
symbol:A9CB42 "tRNA-splicing ligase RtcB homolog"
species:9555 "Papio anubis" [GO:0003972 "RNA ligase (ATP) activity"
evidence=ISS] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] [GO:0072669 "tRNA-splicing
ligase complex" evidence=ISS] GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
HOVERGEN:HBG081383 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
CTD:51493 EMBL:DP000487 RefSeq:NP_001162246.1 UniGene:Pan.3492
ProteinModelPortal:A9CB42 PRIDE:A9CB42 GeneID:100137237
Uniprot:A9CB42
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>UNIPROTKB|Q4R6X4 [details] [associations]
symbol:QtsA-16939 "tRNA-splicing ligase RtcB homolog"
species:9541 "Macaca fascicularis" [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0072669 GO:GO:0006388
GO:GO:0003972 HOVERGEN:HBG081383 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AB169056 ProteinModelPortal:Q4R6X4 PRIDE:Q4R6X4 Uniprot:Q4R6X4
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>MGI|MGI:106379 [details] [associations]
symbol:D10Wsu52e "DNA segment, Chr 10, Wayne State University
52, expressed" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0001890 "placenta development" evidence=IMP]
[GO:0003972 "RNA ligase (ATP) activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISO] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0017166 "vinculin
binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO] MGI:MGI:106379 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0001701 GO:GO:0001890 GO:GO:0072669
GO:GO:0006388 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 KO:K14415
OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118
Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AY424364
EMBL:AK145891 EMBL:AK145916 EMBL:AK149885 EMBL:AK150376
EMBL:AK150470 EMBL:AK151042 EMBL:AK151182 EMBL:AK151932
EMBL:AK152144 EMBL:AK153434 EMBL:AK168038 EMBL:AK172175
EMBL:BC003288 IPI:IPI00116850 RefSeq:NP_663397.1 UniGene:Mm.9257
ProteinModelPortal:Q99LF4 SMR:Q99LF4 IntAct:Q99LF4 STRING:Q99LF4
PhosphoSite:Q99LF4 PaxDb:Q99LF4 PRIDE:Q99LF4 DNASU:28088
Ensembl:ENSMUST00000001834 GeneID:28088 KEGG:mmu:28088
UCSC:uc007gni.1 CTD:28088 InParanoid:Q99LF4 NextBio:306634
Bgee:Q99LF4 Genevestigator:Q99LF4 GermOnline:ENSMUSG00000001783
Uniprot:Q99LF4
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>RGD|1303261 [details] [associations]
symbol:LOC362855 "P55" species:10116 "Rattus norvegicus"
[GO:0001701 "in utero embryonic development" evidence=ISO]
[GO:0001890 "placenta development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISO;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISO;ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0017166 "vinculin
binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO;ISS] RGD:1303261 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
eggNOG:COG1690 GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383
KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7 HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:AY572415 EMBL:BC078924 IPI:IPI00209916
RefSeq:NP_997497.1 UniGene:Rn.11875 ProteinModelPortal:Q6AYT3
SMR:Q6AYT3 MINT:MINT-4576391 STRING:Q6AYT3 PhosphoSite:Q6AYT3
PRIDE:Q6AYT3 Ensembl:ENSRNOT00000006570 GeneID:362855
KEGG:rno:362855 UCSC:RGD:1303261 InParanoid:Q6AYT3 NextBio:681535
Genevestigator:Q6AYT3 GermOnline:ENSRNOG00000004813 Uniprot:Q6AYT3
Length = 505
Score = 205 (77.2 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYKNVTDVV+TCH GISKK KLRP+AVIKG
Sbjct: 460 RVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
Score = 141 (54.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQ
Sbjct: 297 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ 330
>WB|WBGene00008877 [details] [associations]
symbol:F16A11.2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009886 "post-embryonic morphogenesis" evidence=IMP]
GO:GO:0005524 GO:GO:0040010 GO:GO:0046872 GO:GO:0008033
GO:GO:0009886 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:Z81505 PIR:T21006 RefSeq:NP_492498.1
ProteinModelPortal:P90838 SMR:P90838 STRING:P90838 PaxDb:P90838
EnsemblMetazoa:F16A11.2 GeneID:184556 KEGG:cel:CELE_F16A11.2
UCSC:F16A11.2 CTD:184556 WormBase:F16A11.2 InParanoid:P90838
NextBio:925162 Uniprot:P90838
Length = 505
Score = 204 (76.9 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 39/46 (84%), Positives = 42/46 (91%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R+ASPKL+MEEAPESYKNVTDVVDTC A GISKK KLRP+AVIKG
Sbjct: 460 RIASPKLIMEEAPESYKNVTDVVDTCDAAGISKKAVKLRPIAVIKG 505
Score = 118 (46.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCR 98
RINS EG++Y MAAAANFAWVNRS +TF R
Sbjct: 297 RINSVEGKNYFSGMAAAANFAWVNRSCITFCVR 329
>GENEDB_PFALCIPARUM|PF11_0068 [details] [associations]
symbol:PF11_0068 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
GO:GO:0005524 GO:GO:0046872 GO:GO:0008033 EMBL:AE014186
GO:GO:0003972 eggNOG:COG1690 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 ProtClustDB:CLSZ2430783 HOGENOM:HOG000220065
RefSeq:XP_001347744.1 ProteinModelPortal:Q8IIU6 PRIDE:Q8IIU6
EnsemblProtists:PF11_0068:mRNA GeneID:810620 KEGG:pfa:PF11_0068
EuPathDB:PlasmoDB:PF3D7_1105700 Uniprot:Q8IIU6
Length = 506
Score = 192 (72.6 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 37/46 (80%), Positives = 40/46 (86%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKL+MEEAPESYKNV DVV TCH GIS K F+L+PVAVIKG
Sbjct: 461 RVASPKLIMEEAPESYKNVCDVVQTCHDAGISNKCFRLKPVAVIKG 506
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
I+SKEGQ+YLK+M +A NFAW+NRSSMTFL RQ
Sbjct: 299 IHSKEGQNYLKAMGSACNFAWINRSSMTFLARQ 331
>UNIPROTKB|Q8IIU6 [details] [associations]
symbol:PF11_0068 "tRNA-splicing ligase RtcB homolog"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
GO:GO:0005524 GO:GO:0046872 GO:GO:0008033 EMBL:AE014186
GO:GO:0003972 eggNOG:COG1690 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 ProtClustDB:CLSZ2430783 HOGENOM:HOG000220065
RefSeq:XP_001347744.1 ProteinModelPortal:Q8IIU6 PRIDE:Q8IIU6
EnsemblProtists:PF11_0068:mRNA GeneID:810620 KEGG:pfa:PF11_0068
EuPathDB:PlasmoDB:PF3D7_1105700 Uniprot:Q8IIU6
Length = 506
Score = 192 (72.6 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 37/46 (80%), Positives = 40/46 (86%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKL+MEEAPESYKNV DVV TCH GIS K F+L+PVAVIKG
Sbjct: 461 RVASPKLIMEEAPESYKNVCDVVQTCHDAGISNKCFRLKPVAVIKG 506
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 67 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
I+SKEGQ+YLK+M +A NFAW+NRSSMTFL RQ
Sbjct: 299 IHSKEGQNYLKAMGSACNFAWINRSSMTFLARQ 331
>DICTYBASE|DDB_G0278481 [details] [associations]
symbol:iliN "UPF0027 family protein" species:44689
"Dictyostelium discoideum" [GO:0003972 "RNA ligase (ATP) activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] dictyBase:DDB_G0278481 GO:GO:0005524 GO:GO:0046872
EMBL:AAFI02000023 GO:GO:0008033 GO:GO:0003972 eggNOG:COG1690
KO:K14415 OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
RefSeq:XP_642393.1 ProteinModelPortal:Q54Y09 STRING:Q54Y09
EnsemblProtists:DDB0234075 GeneID:8621598 KEGG:ddi:DDB_G0278481
ProtClustDB:CLSZ2430783 Uniprot:Q54Y09
Length = 508
Score = 190 (71.9 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 36/46 (78%), Positives = 41/46 (89%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
RVASPKLVMEEAPESYK+V V++TCH GISKK+ KLRP+AVIKG
Sbjct: 463 RVASPKLVMEEAPESYKDVVQVIETCHKAGISKKSVKLRPIAVIKG 508
Score = 147 (56.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 29/34 (85%), Positives = 29/34 (85%)
Query: 66 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 99
RINS EGQDYL MAAAANFAWVNR SMTFL RQ
Sbjct: 300 RINSTEGQDYLSGMAAAANFAWVNRQSMTFLTRQ 333
>UNIPROTKB|Q3Z899 [details] [associations]
symbol:DET0823 "Putative uncharacterized protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1690 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 OMA:MAIEEKG RefSeq:YP_181550.1
ProteinModelPortal:Q3Z899 SMR:Q3Z899 STRING:Q3Z899 PRIDE:Q3Z899
GeneID:3229904 KEGG:det:DET0823 PATRIC:21608705
ProtClustDB:CLSK837290 BioCyc:DETH243164:GJNF-824-MONOMER
Uniprot:Q3Z899
Length = 486
Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 14 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
EEAPE+YK+V DVV+ H GI++ FK RP+ VIKG
Sbjct: 450 EEAPEAYKDVADVVEVTHKAGIARNIFKTRPLGVIKG 486
>TIGR_CMR|DET_0823 [details] [associations]
symbol:DET_0823 "conserved hypothetical protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1690 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 OMA:MAIEEKG RefSeq:YP_181550.1
ProteinModelPortal:Q3Z899 SMR:Q3Z899 STRING:Q3Z899 PRIDE:Q3Z899
GeneID:3229904 KEGG:det:DET0823 PATRIC:21608705
ProtClustDB:CLSK837290 BioCyc:DETH243164:GJNF-824-MONOMER
Uniprot:Q3Z899
Length = 486
Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 14 EEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
EEAPE+YK+V DVV+ H GI++ FK RP+ VIKG
Sbjct: 450 EEAPEAYKDVADVVEVTHKAGIARNIFKTRPLGVIKG 486
>UNIPROTKB|Q8ZY09 [details] [associations]
symbol:rtcB "tRNA-splicing ligase RtcB" species:178306
"Pyrobaculum aerophilum str. IM2" [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IDA] [GO:0008452
"RNA ligase activity" evidence=TAS] GO:GO:0046872 GO:GO:0006388
EMBL:AE009441 GenomeReviews:AE009441_GR eggNOG:COG1690 KO:K14415
OMA:GRMLNAD InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 GO:GO:0008452 HOGENOM:HOG000220065
RefSeq:NP_559005.1 ProteinModelPortal:Q8ZY09 SMR:Q8ZY09
GeneID:1465422 KEGG:pai:PAE0998 ProtClustDB:CLSK899593
Uniprot:Q8ZY09
Length = 484
Score = 113 (44.8 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R A +++ EEAP +YK+V VV+ H VG +KK + RP+ V+KG
Sbjct: 439 RSAETEVISEEAPWAYKDVDRVVEAAHQVGFAKKVVRQRPIGVVKG 484
>UNIPROTKB|Q8TUS2 [details] [associations]
symbol:rtcB "tRNA-splicing ligase RtcB" species:190192
"Methanopyrus kandleri AV19" [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=TAS] [GO:0008452
"RNA ligase activity" evidence=TAS] InterPro:IPR004042
InterPro:IPR006141 InterPro:IPR006142 PRINTS:PR00379
PROSITE:PS50817 PROSITE:PS50818 PROSITE:PS50819 GO:GO:0046872
GO:GO:0003677 GO:GO:0090305 GO:GO:0004519 GO:GO:0006314
EMBL:AE009439 GenomeReviews:AE009439_GR GO:GO:0006388
InterPro:IPR003586 InterPro:IPR003587 SMART:SM00305 SMART:SM00306
GO:GO:0016539 TIGRFAMs:TIGR01443 TIGRFAMs:TIGR01445 eggNOG:COG1372
KO:K14415 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 GO:GO:0008452 RefSeq:NP_614965.1
ProteinModelPortal:Q8TUS2 SMR:Q8TUS2 GeneID:1478277 KEGG:mka:MK1682
HOGENOM:HOG000296282 OMA:VHNCGVR Uniprot:Q8TUS2
Length = 988
Score = 102 (41.0 bits), Expect = 0.00029, P = 0.00029
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
+ AS +V EEAP +YK+V +VV GIS +LRP+ V+KG
Sbjct: 943 KAASMPVVAEEAPPAYKDVDEVVRAVAEAGISDPVVRLRPIGVVKG 988
>UNIPROTKB|P71930 [details] [associations]
symbol:rtcB "RNA-splicing ligase RtcB" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] GO:GO:0005618
GO:GO:0005576 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0046872 GO:GO:0016874
eggNOG:COG1690 KO:K14415 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
PIR:C70963 RefSeq:NP_217147.2 RefSeq:NP_337208.1
RefSeq:YP_006516074.1 ProteinModelPortal:P71930 SMR:P71930
PRIDE:P71930 EnsemblBacteria:EBMYCT00000000852
EnsemblBacteria:EBMYCT00000072233 GeneID:13319353 GeneID:887431
GeneID:925603 KEGG:mtc:MT2707 KEGG:mtu:Rv2631 KEGG:mtv:RVBD_2631
PATRIC:18127692 TubercuList:Rv2631 HOGENOM:HOG000220065
ProtClustDB:CLSK881399 Uniprot:P71930
Length = 432
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00057
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 5 RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
R S + + EE PE+YK+V +V++ H G+++K +L P+ +KG
Sbjct: 387 RGTSRRGIAEEKPEAYKDVDEVIEASHQSGLARKVARLVPLGCVKG 432
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.129 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 105 105 0.00091 102 3 11 22 0.40 30
29 0.39 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 566 (60 KB)
Total size of DFA: 119 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.24u 0.06s 10.30t Elapsed: 00:00:03
Total cpu time: 10.24u 0.06s 10.30t Elapsed: 00:00:03
Start: Thu Aug 15 17:07:51 2013 End: Thu Aug 15 17:07:54 2013