RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10980
         (105 letters)



>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown
           function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP:
           d.261.1.1
          Length = 481

 Score = 68.6 bits (167), Expect = 4e-15
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 5   RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
           R AS ++V EEAP +YKNV +VV      GI+K   ++RP+ V KG
Sbjct: 436 RAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481



 Score = 47.4 bits (112), Expect = 9e-08
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 64  FLRINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQIL 101
            +   S+EGQ Y  +M AAANFAW NR  +T   R+  
Sbjct: 270 SVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESF 307


>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural
           genomics, NPPSFA, national proje protein structural and
           functional analyses; 2.10A {Thermus thermophilus}
          Length = 487

 Score = 68.1 bits (166), Expect = 5e-15
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 5   RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
           R A+   V EE PE+YK+V+ VV+     GI KK  +LRP+ V+KG
Sbjct: 442 RAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 487



 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 64  FLRINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQIL 101
              I S EGQDYL++MAAAANFA+ NR  +    R+  
Sbjct: 282 AAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAF 319


>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
           pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
           cerevisiae} PDB: 3uai_A
          Length = 400

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 22/79 (27%)

Query: 1   MKDGRVASPK-LVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGQIKSWYLCG 59
              G VAS K  +ME   + Y                 + + L PVA  K Q+K+    G
Sbjct: 328 CDHGVVASVKRCIME--RDLY----------------PRRWGLGPVAQKKKQMKA---DG 366

Query: 60  KAESFLRINSKEGQDYLKS 78
           K + + R+N    + + K 
Sbjct: 367 KLDKYGRVNENTPEQWKKE 385


>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
           CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
           musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
          Length = 469

 Score = 24.9 bits (53), Expect = 5.9
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 22  NVTDVVDTCHAVGISKKTFK--LRPVAVIKGQIK 53
           ++    D CH + + K+ F   LR V     ++K
Sbjct: 423 SIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,545,314
Number of extensions: 76723
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 8
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)