RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10980
         (105 letters)



>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 480

 Score = 66.2 bits (161), Expect = 9e-15
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 5   RVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 50
           R AS ++V EEAP +YKNV +VV      GI+K   ++RP+ V KG
Sbjct: 435 RAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 480



 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 65  LRINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQIL 101
           +   S+EGQ Y  +M AAANFAW NR  +T   R+  
Sbjct: 270 VPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESF 306


>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
           [TaxId: 3562]}
          Length = 359

 Score = 25.7 bits (55), Expect = 1.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 58  CGKAESFLRINSKEGQDYLKSMAAAANFAWVNRSSMTFL 96
            G+   FL    + G D  K++A  A   ++ R  +  L
Sbjct: 277 QGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSL 315


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,992
Number of extensions: 14087
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 6
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)