BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10985
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MZN|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
           Chromohalobacter Salexigens Dsm 3043
 pdb|3MZN|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
           Chromohalobacter Salexigens Dsm 3043
 pdb|3NFU|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
           Chromohalobacter Salexigens Dsm 3043 Complexed With
           Magnesium
 pdb|3NFU|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
           Chromohalobacter Salexigens Dsm 3043 Complexed With
           Magnesium
          Length = 450

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 19  EFQTRTKLLFMIDNCADDWRIAMTWQRISQISMELAICAIHPVPGQHFFLWQTKLANKGG 78
           EF+ RT L    +  A D++      +++ + + LA C        HF+  Q  +A   G
Sbjct: 275 EFKKRTGLPTATNMIATDYKQLQYAVQLNSVDIPLADC--------HFWTMQGAVAV--G 324

Query: 79  ELCSRW 84
           ELC+ W
Sbjct: 325 ELCNEW 330


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.333    0.140    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,652,318
Number of Sequences: 62578
Number of extensions: 151951
Number of successful extensions: 343
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 4
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 48 (23.1 bits)