Query psy10985
Match_columns 167
No_of_seqs 78 out of 80
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 15:13:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rkl_A Dolichyl-diphosphooligo 37.2 17 0.00058 22.1 1.7 14 13-26 18-31 (36)
2 2lat_A Dolichyl-diphosphooligo 36.4 16 0.00053 22.3 1.4 13 13-25 18-30 (37)
3 3ro2_B Peptide of nuclear mito 22.8 21 0.00071 20.4 0.3 8 33-40 15-23 (28)
4 3s8f_C Cytochrome C oxidase po 12.8 1.5E+02 0.0051 17.5 2.4 18 144-161 7-24 (34)
5 2wnv_A C1Q chain A, complement 9.1 97 0.0033 22.3 0.8 14 58-71 41-54 (134)
6 2wnv_B C1Q chain B, complement 8.7 1E+02 0.0036 22.3 0.8 14 58-71 44-57 (136)
7 2wnv_C C1Q chain C, complement 8.6 1E+02 0.0036 22.1 0.8 14 58-71 45-58 (131)
8 1kdx_A CBP; complex (transcrip 8.4 1.2E+02 0.0043 21.0 1.1 29 34-63 3-31 (81)
9 2a9h_A Voltage-gated potassium 7.6 1.7E+02 0.0059 21.8 1.7 22 85-106 16-39 (155)
10 2w56_A VC0508; unknown functio 7.5 87 0.003 24.0 -0.1 19 19-39 56-74 (147)
No 1
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=37.17 E-value=17 Score=22.07 Aligned_cols=14 Identities=0% Similarity=-0.023 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhhee
Q psy10985 13 NLYVCQEFQTRTKL 26 (167)
Q Consensus 13 lL~~ii~yH~~eiq 26 (167)
+..+|++||..|+.
T Consensus 18 ~~~LIvlYH~v~~n 31 (36)
T 1rkl_A 18 MMTLIVIYHAVDST 31 (36)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 45689999998864
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=36.38 E-value=16 Score=22.35 Aligned_cols=13 Identities=0% Similarity=-0.054 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhhe
Q psy10985 13 NLYVCQEFQTRTK 25 (167)
Q Consensus 13 lL~~ii~yH~~ei 25 (167)
+..+|++||..|+
T Consensus 18 ~~~LIVlYH~v~~ 30 (37)
T 2lat_A 18 LFLLVVLYHYVAV 30 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5568999999885
No 3
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=22.82 E-value=21 Score=20.40 Aligned_cols=8 Identities=75% Similarity=1.294 Sum_probs=6.0
Q ss_pred Cccch-hHH
Q psy10985 33 CADDW-RIA 40 (167)
Q Consensus 33 ~~~DW-Ria 40 (167)
-.||| |||
T Consensus 15 qlddw~ria 23 (28)
T 3ro2_B 15 QLDDWNRIA 23 (28)
T ss_dssp CCCCTTTGG
T ss_pred cchhHHHHH
Confidence 46799 886
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=12.80 E-value=1.5e+02 Score=17.55 Aligned_cols=18 Identities=22% Similarity=0.687 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHh
Q psy10985 144 GTVLLVFMVSLWIIASWT 161 (167)
Q Consensus 144 ~~vLl~f~~~~Wii~sW~ 161 (167)
||...++.+..-|+.+|.
T Consensus 7 GTl~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHH
Confidence 677788888888888886
No 5
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=9.13 E-value=97 Score=22.32 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=11.7
Q ss_pred eccCCCccceeeee
Q psy10985 58 IHPVPGQHFFLWQT 71 (167)
Q Consensus 58 IHP~Pg~~~f~w~~ 71 (167)
.+|.||.|.|.++.
T Consensus 41 tap~~G~Y~Fs~~~ 54 (134)
T 2wnv_A 41 VCTVPGYYYFTFQV 54 (134)
T ss_dssp ECCSCEEEEEEEEE
T ss_pred ECeeCCEEEEEEEE
Confidence 47999999998864
No 6
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=8.67 E-value=1e+02 Score=22.32 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=11.6
Q ss_pred eccCCCccceeeee
Q psy10985 58 IHPVPGQHFFLWQT 71 (167)
Q Consensus 58 IHP~Pg~~~f~w~~ 71 (167)
.+|.||.|.|.++.
T Consensus 44 tap~~G~Y~Fs~~~ 57 (136)
T 2wnv_B 44 TCKVPGLYYFTYHA 57 (136)
T ss_dssp ECSSCEEEEEEEEE
T ss_pred ECCcCeEEEEEEEE
Confidence 47999999998864
No 7
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=8.64 E-value=1e+02 Score=22.11 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=11.7
Q ss_pred eccCCCccceeeee
Q psy10985 58 IHPVPGQHFFLWQT 71 (167)
Q Consensus 58 IHP~Pg~~~f~w~~ 71 (167)
.+|.||.|.|.++.
T Consensus 45 tap~~G~Y~Fs~~~ 58 (131)
T 2wnv_C 45 TCKVPGLYYFVYHA 58 (131)
T ss_dssp ECSSCEEEEEEEEE
T ss_pred EcccCCEEEEEEEE
Confidence 47999999998864
No 8
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=8.37 E-value=1.2e+02 Score=21.01 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=23.7
Q ss_pred ccchhHHHhHHHHHHHHHHHhheeeccCCC
Q psy10985 34 ADDWRIAMTWQRISQISMELAICAIHPVPG 63 (167)
Q Consensus 34 ~~DWRia~t~~ri~~i~lEl~VCaIHP~Pg 63 (167)
..||+-.+| +....-+++=+|-||.|-|-
T Consensus 3 ~~~W~~~vt-~~lR~hlv~Klv~aI~P~pd 31 (81)
T 1kdx_A 3 RKGWHEHVT-QDLRSHLVHKLVQAIFPTPD 31 (81)
T ss_dssp TTTGGGGSC-HHHHHHHHHHHHHHHSCCSS
T ss_pred hhHHHHHcC-HHHHHHHHHHHHHHhcCCCC
Confidence 358999888 66677788889999999994
No 9
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=7.65 E-value=1.7e+02 Score=21.81 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred ccchhhhhHHHH--HHHHHHHHHH
Q psy10985 85 VPYDVTLSLPMF--LRLYLICRVM 106 (167)
Q Consensus 85 ~~~dvlLSlpMF--lRlYLi~R~m 106 (167)
...|++.++|++ +|+-=+.|..
T Consensus 16 ~~~dli~~lp~lr~lRllRi~ril 39 (155)
T 2a9h_A 16 GRGRLIKHMPPMLSGLLARLVKLL 39 (155)
T ss_dssp ------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999996 6666666655
No 10
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=7.53 E-value=87 Score=24.02 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=15.2
Q ss_pred HhhhhheeeeccccCccchhH
Q psy10985 19 EFQTRTKLLFMIDNCADDWRI 39 (167)
Q Consensus 19 ~yH~~eiqLf~~dn~~~DWRi 39 (167)
-||-.||||- ..+-++|++
T Consensus 56 GfHPVEIrl~--~~~~~~W~i 74 (147)
T 2w56_A 56 GFHPVEMAIC--QTSTGEWSI 74 (147)
T ss_dssp CSCCEEEEEE--ECTTSCEEE
T ss_pred CcCCEEEEEE--ecCCCcEEE
Confidence 3899999998 556788987
Done!