Query psy10985
Match_columns 167
No_of_seqs 78 out of 80
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 15:13:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10985.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10985hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a7ia1 g.39.1.3 (A:8-35) Cyst 27.1 6 0.00044 21.3 -0.1 9 19-27 10-18 (28)
2 d1b8ta1 g.39.1.3 (A:1-35) Cyst 14.7 15 0.0011 20.7 -0.2 9 19-27 17-25 (35)
3 d1rkla_ f.23.30.1 (A:) Oligosa 9.4 76 0.0056 17.5 1.7 14 12-25 17-30 (36)
4 d1nsoa_ b.50.1.1 (A:) Mason-Pf 7.1 60 0.0044 21.5 0.7 12 28-39 23-34 (107)
5 d2fmba_ b.50.1.1 (A:) EIAV pro 6.7 63 0.0046 21.2 0.6 12 28-39 22-33 (104)
6 d1v6ga2 g.39.1.3 (A:42-81) Act 6.2 83 0.0061 17.9 0.9 15 54-68 1-17 (40)
7 d1zk8a1 a.4.1.9 (A:6-77) Trans 5.4 82 0.006 18.4 0.5 17 39-55 1-17 (72)
8 d1ulza2 c.30.1.1 (A:1-114) Bio 4.8 1.6E+02 0.012 19.6 1.9 24 40-63 59-82 (114)
9 d4fiva_ b.50.1.1 (A:) Feline i 4.8 95 0.0069 20.8 0.6 11 28-38 24-34 (113)
10 d1q42a_ d.17.4.2 (A:) mRNA tra 4.7 88 0.0064 23.0 0.4 13 58-70 88-100 (174)
No 1
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=27.12 E-value=6 Score=21.32 Aligned_cols=9 Identities=0% Similarity=0.021 Sum_probs=7.6
Q ss_pred Hhhhhheee
Q psy10985 19 EFQTRTKLL 27 (167)
Q Consensus 19 ~yH~~eiqL 27 (167)
.|||-|||-
T Consensus 10 vy~aeevqc 18 (28)
T d1a7ia1 10 VYHAEEVQC 18 (28)
T ss_dssp CSSTTEEEE
T ss_pred Eeeeeeeee
Confidence 599999984
No 2
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.70 E-value=15 Score=20.65 Aligned_cols=9 Identities=0% Similarity=-0.119 Sum_probs=7.4
Q ss_pred Hhhhhheee
Q psy10985 19 EFQTRTKLL 27 (167)
Q Consensus 19 ~yH~~eiqL 27 (167)
.|||-|||-
T Consensus 17 vy~aeevqc 25 (35)
T d1b8ta1 17 VYFAEEVQC 25 (35)
T ss_dssp ECSSCCEEE
T ss_pred Eeeeeeeee
Confidence 589999984
No 3
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.44 E-value=76 Score=17.50 Aligned_cols=14 Identities=0% Similarity=0.007 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhe
Q psy10985 12 CNLYVCQEFQTRTK 25 (167)
Q Consensus 12 ~lL~~ii~yH~~ei 25 (167)
.+.-+|+-||+-+-
T Consensus 17 ~mmtliviyh~~~s 30 (36)
T d1rkla_ 17 VMMTLIVIYHAVDS 30 (36)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhhcc
Confidence 35668999998764
No 4
>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian retrovirus 1, SRV-1 [TaxId: 11942]}
Probab=7.06 E-value=60 Score=21.50 Aligned_cols=12 Identities=33% Similarity=0.130 Sum_probs=9.3
Q ss_pred eccccCccchhH
Q psy10985 28 FMIDNCADDWRI 39 (167)
Q Consensus 28 f~~dn~~~DWRi 39 (167)
+++|+||||-=|
T Consensus 23 ~LLDTGAD~TVI 34 (107)
T d1nsoa_ 23 GLINTGADVTII 34 (107)
T ss_dssp ECCCSSCSSCBC
T ss_pred eeecCCCCcEEE
Confidence 689999998533
No 5
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}
Probab=6.66 E-value=63 Score=21.25 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=9.9
Q ss_pred eccccCccchhH
Q psy10985 28 FMIDNCADDWRI 39 (167)
Q Consensus 28 f~~dn~~~DWRi 39 (167)
+++|+||||-=|
T Consensus 22 ~LLDTGAD~TVI 33 (104)
T d2fmba_ 22 VLLDTGADTSVL 33 (104)
T ss_dssp EEECTTCSSCEE
T ss_pred EEEeCCCCeEEE
Confidence 688999998755
No 6
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.17 E-value=83 Score=17.86 Aligned_cols=15 Identities=27% Similarity=0.560 Sum_probs=9.6
Q ss_pred hheeec--cCCCcccee
Q psy10985 54 AICAIH--PVPGQHFFL 68 (167)
Q Consensus 54 ~VCaIH--P~Pg~~~f~ 68 (167)
+||++| |+|.+-.+.
T Consensus 1 FvC~vCr~pFP~GDRVT 17 (40)
T d1v6ga2 1 FVCAVCRLPFPPGDRVT 17 (40)
T ss_dssp SSCSSSCCCCCSSSCEE
T ss_pred CcccccCCCCCCCCeEE
Confidence 378887 777654443
No 7
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=5.36 E-value=82 Score=18.38 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHhh
Q psy10985 39 IAMTWQRISQISMELAI 55 (167)
Q Consensus 39 ia~t~~ri~~i~lEl~V 55 (167)
|++|.++|...+.|++.
T Consensus 1 ~g~t~e~Il~aa~~l~~ 17 (72)
T d1zk8a1 1 IGLTLQKIVETAAEIAD 17 (72)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 46788888888888775
No 8
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=4.84 E-value=1.6e+02 Score=19.63 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHHHhheeeccCCC
Q psy10985 40 AMTWQRISQISMELAICAIHPVPG 63 (167)
Q Consensus 40 a~t~~ri~~i~lEl~VCaIHP~Pg 63 (167)
=+..++|++++.|--+-||||=-|
T Consensus 59 Yln~~~Ii~~A~~~~~daihPGyG 82 (114)
T d1ulza2 59 YLNKQRIINLALEVGADAIHPGYG 82 (114)
T ss_dssp HHCHHHHHHHHHHTTCCEEECCSS
T ss_pred hhcHHHHHHHHHHhCCCeEecchh
Confidence 367899999999999999998766
No 9
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}
Probab=4.80 E-value=95 Score=20.81 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=8.6
Q ss_pred eccccCccchh
Q psy10985 28 FMIDNCADDWR 38 (167)
Q Consensus 28 f~~dn~~~DWR 38 (167)
+++|.||||-=
T Consensus 24 ~LLDTGAD~TV 34 (113)
T d4fiva_ 24 FLLDTGADITI 34 (113)
T ss_dssp EEECTTCSSCE
T ss_pred EEEcCCCCcEE
Confidence 67899999853
No 10
>d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida albicans) [TaxId: 5476]}
Probab=4.67 E-value=88 Score=23.01 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=10.1
Q ss_pred eccCCCccceeee
Q psy10985 58 IHPVPGQHFFLWQ 70 (167)
Q Consensus 58 IHP~Pg~~~f~w~ 70 (167)
-|++||++++.-.
T Consensus 88 ~H~IPGtgt~i~n 100 (174)
T d1q42a_ 88 GHLIPGTGTFVVH 100 (174)
T ss_dssp EEEETTTTEEEEE
T ss_pred eeeeCCCceEEEE
Confidence 5899999887543
Done!