RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10985
         (167 letters)



>gnl|CDD|146263 pfam03530, SK_channel, Calcium-activated SK potassium channel. 
          Length = 120

 Score = 78.1 bits (193), Expect = 2e-19
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 27  LFMIDNCADDWRIAMTWQRISQISMELAICAIHPVPGQHFFLWQ 70
           LFMIDN ADDWRIAMT++R+ QI +EL +CAIHP+PG + F W 
Sbjct: 77  LFMIDNGADDWRIAMTFRRVLQILLELLVCAIHPIPGTYIFSWT 120


>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal.  This domain is the C-terminal
           region of the CASP family of proteins. It is a Golgi
           membrane protein which is thought to have a role in
           vesicle transport.
          Length = 245

 Score = 27.8 bits (62), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 119 RSIGALNRINFN-TRFVLKTLMT------ICPGTVLLVFMVSLWIIASWTMR 163
           + +    RI  + TR VL    +       C G  LLVF+V  ++ AS ++R
Sbjct: 193 KRLSPPERIFLSLTRAVLANRTSRTLFFFYCIGLHLLVFLVLYYMAASDSVR 244


>gnl|CDD|202678 pfam03536, VRP3, Salmonella virulence-associated 28kDa protein. 
          Length = 240

 Score = 26.9 bits (59), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 16  VCQEFQTRTKLLFMIDNCADDWRIAMTWQRISQIS 50
           V Q FQ  + LLF  D+  D W++    +R+ Q S
Sbjct: 113 VPQAFQALSGLLFSEDSPIDKWKVT-DMERVVQQS 146


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.333    0.140    0.472 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,279,237
Number of extensions: 710378
Number of successful extensions: 884
Number of sequences better than 10.0: 1
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 6
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.1 bits)