RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10985
         (167 letters)



>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase
          alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId:
          47881]}
          Length = 62

 Score = 24.3 bits (53), Expect = 3.1
 Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 8/42 (19%)

Query: 45 RISQISMELAICAIHPVPGQHFFLWQTKLANKGGELCSRWVP 86
            +    E     I    G +F           GE    +VP
Sbjct: 29 EATGEPRENIFFVIREGSGINFVE--------HGEHLPDYVP 62


>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 265

 Score = 24.6 bits (53), Expect = 6.5
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 62  PGQHFFLWQTKLANKGGELCSRWVPYDVTLSL 93
           P  HFF +  K +  G E     + YD  +  
Sbjct: 151 PELHFFAFDIKYSVSGAEEDFVLLGYDEFVEF 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.140    0.472 

Gapped
Lambda     K      H
   0.267   0.0373    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 639,401
Number of extensions: 26494
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 3
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.6 bits)