BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10988
(1857 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F61|I Chain I, Tubulin:stathmin-Like Domain Complex
Length = 240
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 1224 GAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRT 1283
G P+ NAS+ + +D +L E+ KK EA ++ + +A L KHL+EK + E+E ++
Sbjct: 28 GVPEFNASLP---RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAI 84
Query: 1284 ED 1285
E+
Sbjct: 85 EE 86
>pdb|4I4T|E Chain E, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 143
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 1224 GAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEAL 1279
G P+ NAS+ + +D +L E+ KK EA ++ + +A L KHL+EK + E+E +
Sbjct: 29 GVPEFNASLP---RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI 81
>pdb|3UT5|E Chain E, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|E Chain E, Tubulin-vinblastine: Stathmin-like Complex
Length = 142
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 1224 GAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEAL 1279
G P+ NAS+ + +D +L E+ KK EA ++ + +A L KHL+EK + E+E +
Sbjct: 28 GVPEFNASLP---RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI 80
>pdb|3RYC|E Chain E, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|E Chain E, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|E Chain E, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|E Chain E, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
Length = 143
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 1224 GAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEAL 1279
G P+ NAS+ + +D +L E+ KK EA ++ + +A L KHL+EK + E+E +
Sbjct: 29 GVPEFNASLP---RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI 81
>pdb|1SA0|E Chain E, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1Z2B|E Chain E, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex
pdb|3DU7|E Chain E, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex
pdb|3E22|E Chain E, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain Complex
pdb|3HKB|E Chain E, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|E Chain E, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|E Chain E, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|E Chain E, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|E Chain E, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|E Chain E, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|1SA1|E Chain E, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
Length = 142
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 1224 GAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEAL 1279
G P+ NAS+ + +D +L E+ KK EA ++ + +A L KHL+EK + E+E +
Sbjct: 28 GVPEFNASLP---RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI 80
>pdb|2V71|A Chain A, Coiled-Coil Region Of Nudel
pdb|2V71|B Chain B, Coiled-Coil Region Of Nudel
Length = 189
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 89/178 (50%), Gaps = 1/178 (0%)
Query: 484 SSSDLNTLREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEM 543
+ D ++L+EE+ ++ + K + + +L Q+G+ ++ Q+ E R
Sbjct: 1 GAXDFSSLKEETAYWKELSXKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRD 60
Query: 544 LSRENEGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIE 603
L +N+ L+ VE L +E+ Y Q ++ D+ +Q A KE+L + V L Q N +
Sbjct: 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120
Query: 604 LKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKL 661
L++ + + E+ + Q E + L +L+ K+ + S+++ L++E ++L +L
Sbjct: 121 LERAKRATIXSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQR-LKDEARDLRQEL 177
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1243 LSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALE--LRTEDLEYKLQEKEKMIQEL 1300
SE L+ K TL ++ + +++ Y++EK+ +E L+ E+ E L+E +K ++L
Sbjct: 359 FSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKFLKREEAERVLEEAKKAFKDL 418
Query: 1301 N 1301
N
Sbjct: 419 N 419
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1243 LSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALE--LRTEDLEYKLQEKEKMIQEL 1300
SE L+ K TL ++ + +++ Y++EK+ +E L+ E+ E L+E +K ++L
Sbjct: 360 FSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKFLKREEAERVLEEAKKAFKDL 419
Query: 1301 N 1301
N
Sbjct: 420 N 420
>pdb|2ETN|A Chain A, Crystal Structure Of Thermus Aquaticus Gfh1
pdb|2ETN|B Chain B, Crystal Structure Of Thermus Aquaticus Gfh1
pdb|2ETN|C Chain C, Crystal Structure Of Thermus Aquaticus Gfh1
Length = 157
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 618 LEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQV 673
LE+E ++L+E T IL+E +ES D DDS + + E + A++ ++E ++++A +
Sbjct: 19 LEQERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDVLSRAVI 74
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 31.2 bits (69), Expect = 5.6, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1243 LSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALE--LRTEDLEYKLQEKEKMIQEL 1300
SE L+ K TL ++ + +++ Y++EK+ +E L+ E+ E L+E +K ++L
Sbjct: 464 FSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKFLKREEAERVLEEAKKAFKDL 523
Query: 1301 N 1301
N
Sbjct: 524 N 524
>pdb|2F23|A Chain A, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
Of Thermus Thermophilus
pdb|2F23|B Chain B, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
Of Thermus Thermophilus
Length = 156
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 618 LEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQV 673
LE E ++L+E T IL+E +ES D DDS + + E + A++ ++E ++++A +
Sbjct: 19 LERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVI 74
>pdb|2EUL|A Chain A, Structure Of The Transcription Factor Gfh1.
pdb|2EUL|B Chain B, Structure Of The Transcription Factor Gfh1.
pdb|2EUL|C Chain C, Structure Of The Transcription Factor Gfh1.
pdb|2EUL|D Chain D, Structure Of The Transcription Factor Gfh1.
pdb|3AOH|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOI|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
Length = 156
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 618 LEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQV 673
LE E ++L+E T IL+E +ES D DDS + + E + A++ ++E ++++A +
Sbjct: 19 LERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVI 74
>pdb|3DOA|A Chain A, The Crystal Structure Of The Fibrinogen Binding Protein
From Staphylococcus Aureus
Length = 288
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 617 GLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVE 665
G+ E I+Q+ D I ++SKD++ D+I +T+ EI H+ LI V+
Sbjct: 85 GIIESIKQIGNDRRI-EIDIKSKDEIGDTIYRTVILEIMGKHSNLILVD 132
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The
Coiled- Coil Domain Of Lida From Legionella Pneumophila
Length = 267
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 10/63 (15%)
Query: 990 LKQTSNTHEEDR---KILDEYKQ---RVQELDAKLAEEIASKTSIIQTLEIQVKELQDKL 1043
L TS+T + D+ K+LDEY+Q R QE + K EE+ K + LE Q K+L+DK
Sbjct: 3 LGSTSSTSQADKEIQKMLDEYEQAIKRAQE-NIKKGEELEKK---LDKLERQGKDLEDKY 58
Query: 1044 RSY 1046
++Y
Sbjct: 59 KTY 61
>pdb|2X3D|A Chain A, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
pdb|2X3D|B Chain B, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
pdb|2X3D|C Chain C, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
pdb|2X3D|D Chain D, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
pdb|2X3D|E Chain E, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
pdb|2X3D|F Chain F, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
pdb|2X3D|G Chain G, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
pdb|2X3D|H Chain H, Crystal Structure Of Sso6206 From Sulfolobus Solfataricus P2
Length = 96
Score = 30.8 bits (68), Expect = 7.9, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 959 MAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKL 1018
+AE + L+ V+ NIS+ M+ E L ++ TS ++ RK+L+E + +D
Sbjct: 23 LAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSID--- 79
Query: 1019 AEEIASKTSIIQ 1030
E+ S II+
Sbjct: 80 --EVVSGNRIIE 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.304 0.122 0.311
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,055,630
Number of Sequences: 62578
Number of extensions: 1599462
Number of successful extensions: 7154
Number of sequences better than 100.0: 251
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 6261
Number of HSP's gapped (non-prelim): 964
length of query: 1857
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1744
effective length of database: 7,902,023
effective search space: 13781128112
effective search space used: 13781128112
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)