Query psy10988
Match_columns 1857
No_of_seqs 166 out of 178
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 15:18:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 100.0 1E-113 3E-118 1115.6 108.8 968 589-1737 835-1925(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 7.9E-93 1.7E-97 894.7 -0.2 748 812-1729 9-859 (859)
3 KOG0161|consensus 100.0 9.9E-20 2.1E-24 241.4 118.3 1020 88-1439 815-1867(1930)
4 TIGR02169 SMC_prok_A chromosom 100.0 6.3E-23 1.4E-27 264.9 85.2 150 326-492 429-584 (1164)
5 KOG4674|consensus 100.0 2.5E-15 5.4E-20 197.6 136.1 1057 90-1294 127-1281(1822)
6 KOG4674|consensus 99.9 4.4E-13 9.6E-18 177.0 153.2 428 587-1064 442-939 (1822)
7 COG1196 Smc Chromosome segrega 99.9 1.8E-18 3.9E-23 227.4 84.2 502 88-638 161-713 (1163)
8 TIGR02168 SMC_prok_B chromosom 99.9 1.6E-18 3.4E-23 223.6 81.5 387 85-493 158-583 (1179)
9 TIGR02169 SMC_prok_A chromosom 99.9 1E-14 2.2E-19 189.4 77.5 41 430-475 596-636 (1164)
10 PF01576 Myosin_tail_1: Myosin 99.8 6E-22 1.3E-26 252.7 -0.1 740 586-1439 5-809 (859)
11 KOG0996|consensus 99.8 1.8E-14 4E-19 181.8 64.6 560 96-716 264-892 (1293)
12 COG1196 Smc Chromosome segrega 99.8 8.4E-13 1.8E-17 174.6 77.1 385 94-498 234-652 (1163)
13 TIGR02168 SMC_prok_B chromosom 99.8 9.8E-12 2.1E-16 161.3 80.6 37 434-475 602-638 (1179)
14 TIGR00606 rad50 rad50. This fa 99.8 4E-10 8.7E-15 151.2 95.9 76 590-665 575-652 (1311)
15 TIGR00606 rad50 rad50. This fa 99.7 1.1E-07 2.5E-12 128.2 106.6 113 741-856 299-422 (1311)
16 PRK04863 mukB cell division pr 99.6 5.5E-09 1.2E-13 140.6 77.6 459 78-559 264-806 (1486)
17 KOG0964|consensus 99.6 3.3E-08 7.1E-13 124.7 72.3 89 429-520 521-614 (1200)
18 KOG0018|consensus 99.6 2.4E-08 5.1E-13 127.4 68.3 537 85-696 153-755 (1141)
19 PRK02224 chromosome segregatio 99.5 4E-09 8.8E-14 136.1 62.2 248 944-1266 143-402 (880)
20 KOG0250|consensus 99.5 1.2E-08 2.5E-13 130.9 62.7 552 58-698 161-787 (1074)
21 KOG0933|consensus 99.5 1.8E-07 3.8E-12 118.8 68.8 163 321-493 417-582 (1174)
22 KOG0996|consensus 99.4 1E-07 2.2E-12 122.6 56.9 268 407-698 657-960 (1293)
23 PRK02224 chromosome segregatio 99.4 1E-06 2.2E-11 114.4 65.9 85 323-409 362-446 (880)
24 PRK03918 chromosome segregatio 99.3 8.3E-06 1.8E-10 105.8 65.8 19 678-696 561-579 (880)
25 PF10174 Cast: RIM-binding pro 99.2 2.5E-05 5.5E-10 100.6 60.7 223 1020-1265 3-262 (775)
26 PRK03918 chromosome segregatio 99.1 0.00023 5E-09 92.7 66.8 45 328-372 388-432 (880)
27 PF10174 Cast: RIM-binding pro 99.0 0.00053 1.1E-08 88.9 73.3 269 1167-1472 285-577 (775)
28 PRK01156 chromosome segregatio 99.0 0.00026 5.5E-09 93.0 60.4 45 765-809 671-715 (895)
29 KOG0018|consensus 98.9 0.00017 3.6E-09 93.7 53.6 300 425-789 573-898 (1141)
30 KOG0933|consensus 98.9 0.0011 2.3E-08 86.0 63.3 115 582-696 738-859 (1174)
31 PRK01156 chromosome segregatio 98.7 0.0044 9.5E-08 81.7 67.3 24 253-276 301-324 (895)
32 KOG0250|consensus 98.7 0.0003 6.6E-09 91.9 43.4 50 589-638 658-707 (1074)
33 PF12128 DUF3584: Protein of u 98.6 0.012 2.7E-07 80.2 80.7 31 37-67 180-210 (1201)
34 KOG0979|consensus 98.5 0.016 3.6E-07 75.8 55.7 560 73-694 101-727 (1072)
35 PRK04863 mukB cell division pr 98.4 0.043 9.3E-07 76.3 83.6 204 582-796 276-491 (1486)
36 KOG0964|consensus 98.4 0.029 6.2E-07 73.3 57.3 246 435-694 599-889 (1200)
37 PF12128 DUF3584: Protein of u 98.4 0.047 1E-06 74.9 73.3 52 346-399 484-535 (1201)
38 KOG0971|consensus 98.4 0.01 2.2E-07 76.5 43.8 245 78-337 217-475 (1243)
39 PF00038 Filament: Intermediat 98.2 0.00074 1.6E-08 78.4 28.6 277 737-1059 2-305 (312)
40 PF07888 CALCOCO1: Calcium bin 98.2 0.024 5.2E-07 71.4 42.4 72 1560-1642 280-351 (546)
41 KOG0976|consensus 98.2 0.053 1.1E-06 69.5 43.2 84 51-134 47-134 (1265)
42 PF00261 Tropomyosin: Tropomyo 98.1 0.0024 5.3E-08 72.6 29.1 146 141-306 22-169 (237)
43 PF07111 HCR: Alpha helical co 98.1 0.088 1.9E-06 67.5 71.6 177 1376-1578 341-529 (739)
44 PF00261 Tropomyosin: Tropomyo 98.1 0.00059 1.3E-08 77.5 23.7 47 327-373 172-218 (237)
45 PF15070 GOLGA2L5: Putative go 98.1 0.11 2.3E-06 67.0 46.9 477 43-633 2-511 (617)
46 PF00038 Filament: Intermediat 97.9 0.02 4.4E-07 66.7 32.8 87 94-180 6-100 (312)
47 KOG0977|consensus 97.9 0.0026 5.6E-08 79.7 26.6 293 737-1059 40-385 (546)
48 PRK04778 septation ring format 97.9 0.069 1.5E-06 68.0 39.6 156 252-413 350-507 (569)
49 PRK04778 septation ring format 97.9 0.063 1.4E-06 68.4 39.2 86 326-413 350-435 (569)
50 PF07888 CALCOCO1: Calcium bin 97.8 0.1 2.2E-06 66.0 38.0 70 232-301 279-348 (546)
51 PF06470 SMC_hinge: SMC protei 97.8 1E-05 2.2E-10 80.7 2.4 64 430-495 2-68 (120)
52 PHA02562 46 endonuclease subun 97.8 0.011 2.3E-07 73.8 28.9 49 325-373 338-386 (562)
53 KOG0971|consensus 97.7 0.15 3.3E-06 66.5 37.5 163 141-316 265-441 (1243)
54 KOG0962|consensus 97.7 0.55 1.2E-05 64.2 90.7 122 830-963 790-919 (1294)
55 KOG4673|consensus 97.7 0.35 7.6E-06 61.8 44.8 187 1529-1729 578-764 (961)
56 PF06160 EzrA: Septation ring 97.7 0.065 1.4E-06 68.3 33.7 88 324-413 344-431 (560)
57 KOG4643|consensus 97.7 0.17 3.7E-06 66.7 37.1 332 67-402 152-557 (1195)
58 KOG4673|consensus 97.7 0.4 8.7E-06 61.3 53.2 163 35-211 297-468 (961)
59 PF05557 MAD: Mitotic checkpoi 97.7 9.8E-05 2.1E-09 95.1 8.7 32 527-558 554-585 (722)
60 KOG0977|consensus 97.6 0.11 2.4E-06 65.8 33.3 145 73-219 11-178 (546)
61 KOG4643|consensus 97.6 0.16 3.5E-06 66.9 35.0 255 95-366 267-558 (1195)
62 KOG0612|consensus 97.6 0.096 2.1E-06 70.2 33.5 50 649-698 512-561 (1317)
63 PF06160 EzrA: Septation ring 97.6 0.37 8E-06 61.6 37.9 144 252-401 346-491 (560)
64 PF05701 WEMBL: Weak chloropla 97.6 0.53 1.2E-05 59.8 49.2 41 1167-1207 114-154 (522)
65 KOG0978|consensus 97.5 0.73 1.6E-05 60.1 49.6 69 570-638 226-304 (698)
66 COG0419 SbcC ATPase involved i 97.5 0.98 2.1E-05 60.7 62.0 46 507-559 501-546 (908)
67 PHA02562 46 endonuclease subun 97.5 0.066 1.4E-06 67.0 29.4 27 189-215 255-281 (562)
68 PF05557 MAD: Mitotic checkpoi 97.4 0.00034 7.3E-09 90.4 9.2 51 666-716 503-554 (722)
69 KOG0963|consensus 97.2 0.82 1.8E-05 58.6 34.2 104 786-892 200-305 (629)
70 COG1340 Uncharacterized archae 97.2 0.83 1.8E-05 54.5 31.8 217 137-373 30-249 (294)
71 PF05622 HOOK: HOOK protein; 97.1 0.00039 8.5E-09 89.7 4.9 297 944-1265 201-519 (713)
72 PRK11637 AmiB activator; Provi 97.1 0.31 6.6E-06 60.1 29.2 70 111-180 45-114 (428)
73 PF15070 GOLGA2L5: Putative go 97.1 1.8 3.9E-05 56.4 38.6 225 583-851 20-260 (617)
74 PF05701 WEMBL: Weak chloropla 97.0 1.9 4E-05 55.1 50.1 52 1107-1158 38-89 (522)
75 PRK11637 AmiB activator; Provi 97.0 0.22 4.8E-06 61.3 26.8 30 197-226 111-140 (428)
76 KOG0612|consensus 97.0 1.7 3.8E-05 59.0 35.0 299 87-412 436-772 (1317)
77 PF09787 Golgin_A5: Golgin sub 96.9 0.96 2.1E-05 57.4 31.8 225 141-373 180-413 (511)
78 KOG1029|consensus 96.9 0.28 6E-06 63.3 26.5 107 257-367 416-522 (1118)
79 KOG0994|consensus 96.9 3.3 7.1E-05 56.1 51.3 49 1109-1157 1224-1279(1758)
80 PF05622 HOOK: HOOK protein; 96.9 0.00026 5.5E-09 91.3 0.0 119 9-129 158-283 (713)
81 PF08317 Spc7: Spc7 kinetochor 96.8 0.4 8.6E-06 57.5 26.0 205 76-294 52-267 (325)
82 PF09730 BicD: Microtubule-ass 96.8 2.4 5.1E-05 56.0 34.0 105 585-696 359-463 (717)
83 PF01465 GRIP: GRIP domain; I 96.8 0.0016 3.5E-08 57.6 4.4 44 1735-1778 2-45 (46)
84 PF09726 Macoilin: Transmembra 96.8 0.69 1.5E-05 60.7 29.3 91 116-207 421-513 (697)
85 TIGR03185 DNA_S_dndD DNA sulfu 96.8 3.3 7.2E-05 54.0 37.1 115 38-165 165-286 (650)
86 COG5185 HEC1 Protein involved 96.7 0.81 1.8E-05 56.8 26.8 169 46-219 216-398 (622)
87 COG4372 Uncharacterized protei 96.6 0.99 2.1E-05 55.1 26.6 179 232-413 112-290 (499)
88 KOG0963|consensus 96.6 4.2 9.1E-05 52.5 39.0 331 910-1283 68-418 (629)
89 PF14915 CCDC144C: CCDC144C pr 96.5 2.8 6.1E-05 50.1 33.0 238 103-370 53-303 (305)
90 KOG0980|consensus 96.5 5.4 0.00012 53.1 40.4 75 242-316 437-511 (980)
91 PF12718 Tropomyosin_1: Tropom 96.5 0.23 5E-06 53.5 18.8 97 199-311 3-99 (143)
92 PF09726 Macoilin: Transmembra 96.5 0.79 1.7E-05 60.2 27.0 46 141-187 467-512 (697)
93 COG1579 Zn-ribbon protein, pos 96.5 0.83 1.8E-05 53.2 24.2 119 90-219 1-119 (239)
94 KOG0995|consensus 96.4 4.7 0.0001 51.7 34.9 43 92-134 213-256 (581)
95 KOG0994|consensus 96.4 6.9 0.00015 53.3 35.2 73 326-400 1670-1742(1758)
96 KOG0976|consensus 96.3 6.2 0.00013 52.0 55.9 390 757-1206 116-520 (1265)
97 smart00787 Spc7 Spc7 kinetocho 96.2 4.3 9.4E-05 49.0 29.0 230 78-317 49-289 (312)
98 smart00755 Grip golgin-97, Ran 96.1 0.0079 1.7E-07 53.7 4.6 42 1736-1778 2-43 (46)
99 COG1579 Zn-ribbon protein, pos 96.1 0.74 1.6E-05 53.6 21.2 69 193-273 14-82 (239)
100 TIGR03185 DNA_S_dndD DNA sulfu 96.1 7.9 0.00017 50.6 34.5 87 141-229 209-295 (650)
101 PF08317 Spc7: Spc7 kinetochor 96.0 2 4.4E-05 51.6 25.3 82 323-406 208-293 (325)
102 KOG0995|consensus 96.0 7.6 0.00017 49.9 37.9 63 118-180 233-298 (581)
103 PF10375 GRAB: GRIP-related Ar 96.0 0.0031 6.6E-08 47.0 1.2 18 1732-1749 2-19 (19)
104 KOG1029|consensus 96.0 8.9 0.00019 50.6 35.9 143 236-391 437-579 (1118)
105 KOG0962|consensus 95.9 13 0.00027 52.0 92.7 103 596-698 185-293 (1294)
106 COG1340 Uncharacterized archae 95.9 5.7 0.00012 47.8 33.7 78 239-316 161-238 (294)
107 KOG0946|consensus 95.9 1.4 3.1E-05 57.7 24.2 35 188-222 736-770 (970)
108 KOG0946|consensus 95.9 2 4.4E-05 56.4 25.4 23 351-373 903-925 (970)
109 TIGR02680 conserved hypothetic 95.8 16 0.00034 52.0 37.4 61 74-134 704-770 (1353)
110 PRK09039 hypothetical protein; 95.8 0.82 1.8E-05 55.4 21.0 161 242-408 38-199 (343)
111 TIGR02680 conserved hypothetic 95.7 17 0.00038 51.6 66.3 33 434-467 605-639 (1353)
112 PF15619 Lebercilin: Ciliary p 95.7 3.5 7.6E-05 46.8 23.9 159 1507-1681 16-179 (194)
113 PF05667 DUF812: Protein of un 95.6 12 0.00026 49.0 35.0 189 98-311 320-510 (594)
114 PF05911 DUF869: Plant protein 95.6 14 0.0003 49.7 54.1 82 766-848 678-760 (769)
115 COG0419 SbcC ATPase involved i 95.4 17 0.00037 49.5 71.1 17 25-41 23-40 (908)
116 PF10473 CENP-F_leu_zip: Leuci 95.4 1.2 2.6E-05 48.3 18.1 127 236-369 10-136 (140)
117 COG4942 Membrane-bound metallo 95.3 5.4 0.00012 49.9 25.7 199 196-408 38-250 (420)
118 KOG0980|consensus 95.3 5.7 0.00012 52.9 26.7 108 192-311 354-464 (980)
119 PF12718 Tropomyosin_1: Tropom 95.2 1.3 2.9E-05 47.8 17.9 67 234-300 5-71 (143)
120 PF14915 CCDC144C: CCDC144C pr 94.9 12 0.00026 45.2 33.0 136 222-361 122-258 (305)
121 PRK11281 hypothetical protein; 94.9 5.9 0.00013 54.8 26.6 51 376-441 293-343 (1113)
122 PF14662 CCDC155: Coiled-coil 94.9 9.1 0.0002 43.7 25.0 163 1513-1722 18-190 (193)
123 COG4942 Membrane-bound metallo 94.8 16 0.00034 46.0 29.1 100 242-348 156-255 (420)
124 PF14662 CCDC155: Coiled-coil 94.7 9.9 0.00022 43.4 24.2 59 232-290 70-128 (193)
125 PF04849 HAP1_N: HAP1 N-termin 94.7 13 0.00029 45.0 25.9 156 145-316 87-265 (306)
126 PF15619 Lebercilin: Ciliary p 94.5 6.1 0.00013 45.0 21.5 165 232-406 22-188 (194)
127 PF10473 CENP-F_leu_zip: Leuci 94.4 2.4 5.3E-05 46.0 17.3 120 250-373 3-122 (140)
128 COG3883 Uncharacterized protei 94.3 3.3 7.1E-05 49.1 19.3 167 620-802 38-217 (265)
129 PF09789 DUF2353: Uncharacteri 94.0 3.5 7.6E-05 50.0 19.4 288 41-369 26-317 (319)
130 KOG1003|consensus 93.8 16 0.00034 42.0 25.3 112 249-364 80-198 (205)
131 PRK09039 hypothetical protein; 93.6 3 6.4E-05 50.8 17.9 11 443-453 235-245 (343)
132 PF05483 SCP-1: Synaptonemal c 93.4 37 0.0008 44.9 70.8 114 235-352 232-345 (786)
133 TIGR03007 pepcterm_ChnLen poly 93.1 20 0.00044 45.1 24.7 85 188-275 203-293 (498)
134 PF09755 DUF2046: Uncharacteri 93.0 27 0.00059 42.5 35.0 66 95-160 23-96 (310)
135 TIGR01843 type_I_hlyD type I s 93.0 24 0.00053 42.6 24.5 80 1669-1752 213-296 (423)
136 PF05010 TACC: Transforming ac 93.0 22 0.00047 41.2 24.5 123 263-404 61-183 (207)
137 PF04849 HAP1_N: HAP1 N-termin 93.0 28 0.0006 42.4 32.3 143 157-313 162-304 (306)
138 PF05667 DUF812: Protein of un 92.9 41 0.00089 44.3 30.1 109 259-369 428-536 (594)
139 PF15066 CAGE1: Cancer-associa 92.8 6.5 0.00014 49.4 19.1 126 649-795 342-473 (527)
140 PF05010 TACC: Transforming ac 92.7 23 0.00051 40.9 25.3 124 241-371 67-194 (207)
141 PF06008 Laminin_I: Laminin Do 92.3 28 0.0006 40.8 28.4 113 197-311 88-204 (264)
142 TIGR03017 EpsF chain length de 92.2 34 0.00074 42.4 24.7 119 1592-1731 251-369 (444)
143 PF13166 AAA_13: AAA domain 92.2 16 0.00034 47.8 23.0 48 21-68 245-296 (712)
144 TIGR01000 bacteriocin_acc bact 92.2 24 0.00052 44.3 23.6 52 1698-1752 285-341 (457)
145 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.7 8.2 0.00018 41.1 16.3 68 321-400 63-130 (132)
146 PF09730 BicD: Microtubule-ass 91.7 62 0.0013 43.6 52.0 168 242-413 264-450 (717)
147 COG4372 Uncharacterized protei 91.5 46 0.00099 41.6 29.7 37 95-131 77-113 (499)
148 TIGR03007 pepcterm_ChnLen poly 91.5 24 0.00051 44.5 22.6 34 336-369 315-348 (498)
149 smart00787 Spc7 Spc7 kinetocho 91.4 32 0.0007 41.9 22.6 108 262-369 142-249 (312)
150 PF09728 Taxilin: Myosin-like 91.3 42 0.00092 40.8 36.6 99 307-411 203-301 (309)
151 COG4477 EzrA Negative regulato 91.2 59 0.0013 42.2 41.5 156 912-1102 67-223 (570)
152 COG3883 Uncharacterized protei 91.1 39 0.00084 40.5 22.2 35 232-266 62-96 (265)
153 PF06705 SF-assemblin: SF-asse 91.0 36 0.00079 39.6 25.8 61 766-832 10-70 (247)
154 PF05483 SCP-1: Synaptonemal c 90.5 75 0.0016 42.3 66.9 198 741-965 294-507 (786)
155 KOG0978|consensus 90.4 79 0.0017 42.4 58.9 93 188-280 96-190 (698)
156 PF13851 GAS: Growth-arrest sp 89.7 42 0.00092 38.5 20.5 19 355-373 153-171 (201)
157 COG5185 HEC1 Protein involved 89.7 72 0.0016 40.9 32.7 86 91-180 248-334 (622)
158 TIGR01005 eps_transp_fam exopo 89.6 71 0.0015 42.6 25.5 73 146-219 185-267 (754)
159 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.5 32 0.0007 36.7 19.4 51 1669-1719 69-127 (132)
160 KOG4593|consensus 89.5 90 0.0019 41.7 49.0 64 787-851 156-223 (716)
161 TIGR00634 recN DNA repair prot 89.0 46 0.001 43.1 22.6 31 321-351 343-373 (563)
162 TIGR01843 type_I_hlyD type I s 88.8 64 0.0014 39.2 24.3 71 240-310 200-271 (423)
163 PF12795 MscS_porin: Mechanose 88.7 52 0.0011 38.1 20.7 120 282-407 82-210 (240)
164 KOG1003|consensus 88.7 53 0.0011 38.0 24.0 30 245-274 48-77 (205)
165 PF10146 zf-C4H2: Zinc finger- 88.5 4.5 9.7E-05 47.1 12.0 68 231-298 34-101 (230)
166 PF13514 AAA_27: AAA domain 88.5 1.3E+02 0.0028 42.3 79.3 19 1041-1059 421-439 (1111)
167 PF13514 AAA_27: AAA domain 88.4 1.3E+02 0.0028 42.3 73.4 271 92-366 174-494 (1111)
168 PF12325 TMF_TATA_bd: TATA ele 88.3 7.5 0.00016 41.4 12.5 96 584-694 15-110 (120)
169 PF04012 PspA_IM30: PspA/IM30 88.2 53 0.0011 37.4 20.2 56 642-698 21-76 (221)
170 TIGR01005 eps_transp_fam exopo 87.9 56 0.0012 43.6 22.9 186 194-400 199-394 (754)
171 PF08614 ATG16: Autophagy prot 87.4 1.2 2.5E-05 49.9 6.4 104 292-401 67-170 (194)
172 COG4026 Uncharacterized protei 87.3 3.8 8.1E-05 47.4 10.1 63 625-698 147-209 (290)
173 PF11932 DUF3450: Protein of u 87.2 7 0.00015 45.4 12.6 158 304-499 40-208 (251)
174 KOG4360|consensus 86.8 63 0.0014 41.7 20.7 149 144-311 86-259 (596)
175 TIGR00634 recN DNA repair prot 86.8 51 0.0011 42.8 21.0 24 346-369 347-370 (563)
176 KOG1853|consensus 86.7 50 0.0011 39.3 18.6 133 251-396 53-185 (333)
177 PF13870 DUF4201: Domain of un 86.5 58 0.0013 36.1 21.1 76 105-180 5-81 (177)
178 COG4477 EzrA Negative regulato 86.5 1.2E+02 0.0026 39.7 31.4 115 51-180 62-182 (570)
179 PF09789 DUF2353: Uncharacteri 86.3 94 0.002 38.4 24.9 77 325-406 134-213 (319)
180 KOG0249|consensus 85.8 60 0.0013 43.3 20.4 211 79-291 23-257 (916)
181 PRK11281 hypothetical protein; 85.8 1.8E+02 0.004 41.2 37.0 164 100-286 74-249 (1113)
182 KOG0249|consensus 85.6 42 0.00091 44.6 18.9 101 1663-1778 213-321 (916)
183 PF10267 Tmemb_cc2: Predicted 85.5 74 0.0016 40.2 20.6 23 241-263 296-318 (395)
184 PF04912 Dynamitin: Dynamitin 85.4 25 0.00055 43.5 16.8 123 86-219 240-366 (388)
185 TIGR03017 EpsF chain length de 84.9 1.1E+02 0.0024 38.0 23.1 69 150-219 166-238 (444)
186 PF15450 DUF4631: Domain of un 84.7 1.4E+02 0.003 38.9 35.9 279 118-413 219-510 (531)
187 PF04156 IncA: IncA protein; 84.4 25 0.00053 39.0 14.6 71 242-312 80-150 (191)
188 PF12795 MscS_porin: Mechanose 84.2 90 0.0019 36.3 20.0 48 324-371 150-197 (240)
189 PF04012 PspA_IM30: PspA/IM30 83.6 87 0.0019 35.7 19.6 44 1670-1716 95-138 (221)
190 KOG2129|consensus 83.3 1.4E+02 0.0031 37.9 21.6 177 754-971 136-320 (552)
191 PRK10869 recombination and rep 82.7 1.6E+02 0.0035 38.6 22.8 47 321-369 345-391 (553)
192 PF07111 HCR: Alpha helical co 82.3 2E+02 0.0043 38.8 63.4 81 1105-1185 237-329 (739)
193 KOG0982|consensus 82.2 1.6E+02 0.0034 37.7 22.2 143 1560-1731 294-437 (502)
194 PF13870 DUF4201: Domain of un 82.0 90 0.0019 34.7 19.2 131 235-369 5-136 (177)
195 PF08614 ATG16: Autophagy prot 81.4 3.9 8.4E-05 45.9 7.1 36 334-369 140-175 (194)
196 PF09755 DUF2046: Uncharacteri 81.2 1.5E+02 0.0032 36.6 32.4 83 588-694 23-105 (310)
197 PF04156 IncA: IncA protein; 81.0 43 0.00092 37.2 14.8 40 259-298 83-122 (191)
198 PF09304 Cortex-I_coil: Cortex 81.0 13 0.00029 39.1 10.0 72 717-802 28-99 (107)
199 PF04912 Dynamitin: Dynamitin 80.9 1.6E+02 0.0034 36.8 27.7 34 85-118 76-113 (388)
200 PF12325 TMF_TATA_bd: TATA ele 79.8 42 0.0009 36.0 13.5 45 141-186 16-60 (120)
201 PF09728 Taxilin: Myosin-like 79.7 1.6E+02 0.0034 36.1 35.7 33 95-127 25-57 (309)
202 TIGR02338 gimC_beta prefoldin, 79.3 28 0.0006 36.1 11.9 45 90-134 1-45 (110)
203 PRK10929 putative mechanosensi 79.0 3.1E+02 0.0068 39.1 38.5 36 99-134 58-93 (1109)
204 PF04111 APG6: Autophagy prote 78.7 14 0.00031 44.7 11.0 45 329-373 90-134 (314)
205 PF05911 DUF869: Plant protein 78.2 2.8E+02 0.006 38.1 52.4 245 93-368 18-309 (769)
206 PRK10929 putative mechanosensi 78.2 3.3E+02 0.0071 38.9 43.8 39 1707-1745 407-449 (1109)
207 PF06785 UPF0242: Uncharacteri 78.1 1.5E+02 0.0033 36.8 18.7 145 203-373 78-222 (401)
208 PF06008 Laminin_I: Laminin Do 77.9 1.5E+02 0.0033 34.9 28.4 42 93-134 25-66 (264)
209 PF10498 IFT57: Intra-flagella 77.8 65 0.0014 40.1 16.3 94 1539-1636 214-307 (359)
210 COG2433 Uncharacterized conser 77.3 52 0.0011 43.2 15.6 57 16-73 311-372 (652)
211 PF00769 ERM: Ezrin/radixin/mo 77.3 1.2E+02 0.0026 35.9 17.6 132 1560-1734 2-133 (246)
212 PF10168 Nup88: Nuclear pore c 77.0 2.9E+02 0.0063 37.6 25.5 46 141-187 579-624 (717)
213 KOG4403|consensus 76.7 2.3E+02 0.005 36.3 20.5 32 1699-1730 392-423 (575)
214 PF10168 Nup88: Nuclear pore c 76.6 1.9E+02 0.0042 39.2 21.2 19 336-354 690-708 (717)
215 PRK10246 exonuclease subunit S 76.1 3.5E+02 0.0077 38.2 72.9 87 765-852 707-801 (1047)
216 PF10186 Atg14: UV radiation r 75.8 97 0.0021 36.0 16.4 24 252-275 22-45 (302)
217 PF09731 Mitofilin: Mitochondr 75.6 2.3E+02 0.0049 37.0 21.0 58 1788-1850 464-528 (582)
218 KOG4807|consensus 75.4 2.3E+02 0.0051 35.8 29.9 173 1190-1432 245-438 (593)
219 PF00769 ERM: Ezrin/radixin/mo 74.4 1.9E+02 0.0041 34.3 18.3 73 244-316 6-78 (246)
220 TIGR01000 bacteriocin_acc bact 74.0 2.6E+02 0.0055 35.6 21.3 25 376-400 292-316 (457)
221 PF04111 APG6: Autophagy prote 73.7 24 0.00051 42.9 11.1 59 328-388 75-133 (314)
222 PF10498 IFT57: Intra-flagella 73.1 1.5E+02 0.0033 37.0 17.8 61 158-219 262-324 (359)
223 KOG1899|consensus 73.0 2.4E+02 0.0052 37.7 19.4 46 1597-1642 106-151 (861)
224 PRK10246 exonuclease subunit S 72.1 4.3E+02 0.0093 37.4 67.0 94 1114-1207 714-808 (1047)
225 PF11559 ADIP: Afadin- and alp 71.3 1.6E+02 0.0034 32.0 16.4 27 247-273 123-149 (151)
226 PF10146 zf-C4H2: Zinc finger- 70.7 70 0.0015 37.7 13.5 45 323-367 59-103 (230)
227 PF05335 DUF745: Protein of un 70.3 2.1E+02 0.0046 33.0 19.3 121 1578-1730 50-170 (188)
228 COG2433 Uncharacterized conser 69.8 55 0.0012 43.0 13.3 30 280-309 438-467 (652)
229 PF06818 Fez1: Fez1; InterPro 69.5 79 0.0017 36.8 13.3 40 271-310 66-105 (202)
230 KOG4809|consensus 69.2 3.8E+02 0.0081 35.5 31.9 147 680-850 243-395 (654)
231 PF13851 GAS: Growth-arrest sp 68.2 2.3E+02 0.005 32.7 26.4 104 251-362 28-131 (201)
232 PF15254 CCDC14: Coiled-coil d 67.9 4.6E+02 0.01 36.0 27.0 235 1511-1764 338-599 (861)
233 KOG1899|consensus 67.7 4.3E+02 0.0092 35.5 22.1 93 76-180 93-185 (861)
234 COG3206 GumC Uncharacterized p 66.3 3.6E+02 0.0079 34.2 21.9 122 1589-1731 279-400 (458)
235 PF15450 DUF4631: Domain of un 66.3 4.2E+02 0.009 34.9 36.0 157 1532-1695 161-330 (531)
236 TIGR02977 phageshock_pspA phag 65.7 2.6E+02 0.0057 32.4 20.6 37 1651-1687 98-134 (219)
237 COG1842 PspA Phage shock prote 65.4 2.9E+02 0.0062 32.7 17.3 107 588-694 27-141 (225)
238 PF09744 Jnk-SapK_ap_N: JNK_SA 65.1 1.1E+02 0.0024 34.3 13.0 85 89-173 26-121 (158)
239 PF06785 UPF0242: Uncharacteri 64.6 3.7E+02 0.008 33.7 19.4 136 156-316 93-232 (401)
240 PRK09343 prefoldin subunit bet 64.4 1E+02 0.0022 32.8 12.1 45 90-134 5-49 (121)
241 PF05266 DUF724: Protein of un 63.8 56 0.0012 37.4 10.7 148 524-698 27-177 (190)
242 KOG0804|consensus 63.4 2.2E+02 0.0047 36.8 16.2 74 203-288 347-420 (493)
243 COG1382 GimC Prefoldin, chaper 62.8 1.4E+02 0.003 32.4 12.5 91 90-180 4-102 (119)
244 KOG0982|consensus 62.3 4.5E+02 0.0098 33.9 25.2 135 1503-1662 215-349 (502)
245 PLN03229 acetyl-coenzyme A car 61.9 3.8E+02 0.0083 36.7 18.8 29 827-855 648-686 (762)
246 PLN03229 acetyl-coenzyme A car 60.4 6.1E+02 0.013 34.9 20.3 66 44-109 461-545 (762)
247 PF10481 CENP-F_N: Cenp-F N-te 60.3 1.5E+02 0.0033 35.9 13.6 45 257-301 18-62 (307)
248 PF06818 Fez1: Fez1; InterPro 60.2 3.4E+02 0.0074 31.9 20.3 15 166-180 14-28 (202)
249 PF04899 MbeD_MobD: MbeD/MobD 59.3 44 0.00096 33.0 7.7 61 1141-1207 6-66 (70)
250 KOG0804|consensus 59.1 2.2E+02 0.0047 36.7 15.2 53 264-316 347-399 (493)
251 PF10481 CENP-F_N: Cenp-F N-te 58.6 1.8E+02 0.0039 35.4 13.7 74 292-369 60-133 (307)
252 PF09787 Golgin_A5: Golgin sub 58.1 5.4E+02 0.012 33.5 33.6 120 45-175 116-241 (511)
253 PF11932 DUF3450: Protein of u 57.9 3.7E+02 0.0081 31.6 17.5 10 394-403 164-173 (251)
254 KOG4809|consensus 57.9 5.9E+02 0.013 33.9 28.0 143 155-310 331-481 (654)
255 PHA03190 UL14 tegument protein 57.8 2.2E+02 0.0048 33.0 13.7 36 1778-1813 127-166 (196)
256 PF15397 DUF4618: Domain of un 57.7 4.2E+02 0.0092 32.1 22.5 80 1046-1138 50-145 (258)
257 PRK03947 prefoldin subunit alp 56.0 1.8E+02 0.0039 31.1 12.4 45 90-134 4-48 (140)
258 PF09738 DUF2051: Double stran 54.8 96 0.0021 38.0 11.2 15 509-523 235-249 (302)
259 PF13166 AAA_13: AAA domain 54.6 6.6E+02 0.014 33.4 27.7 27 443-470 540-571 (712)
260 PF01442 Apolipoprotein: Apoli 53.1 3.2E+02 0.0068 29.3 20.0 12 844-855 91-102 (202)
261 PRK10698 phage shock protein P 52.7 4.4E+02 0.0096 30.9 17.7 106 589-694 28-141 (222)
262 PF10267 Tmemb_cc2: Predicted 52.3 6.2E+02 0.013 32.5 19.4 74 1634-1717 245-318 (395)
263 PF11559 ADIP: Afadin- and alp 52.0 3.4E+02 0.0075 29.4 17.9 91 222-316 14-104 (151)
264 PF12777 MT: Microtubule-bindi 52.0 73 0.0016 39.1 9.8 76 236-311 221-296 (344)
265 KOG4360|consensus 51.9 7.1E+02 0.015 33.0 18.5 104 198-313 192-303 (596)
266 KOG4593|consensus 51.4 8.1E+02 0.017 33.5 53.7 17 1024-1040 116-132 (716)
267 PF07798 DUF1640: Protein of u 51.2 2.2E+02 0.0047 32.0 12.5 23 926-948 121-143 (177)
268 PLN02939 transferase, transfer 49.6 9.9E+02 0.021 34.0 30.1 108 1523-1634 225-342 (977)
269 PRK10869 recombination and rep 49.0 7.7E+02 0.017 32.6 23.0 10 461-470 454-463 (553)
270 PF09304 Cortex-I_coil: Cortex 48.9 3.7E+02 0.008 28.9 14.5 12 249-260 85-96 (107)
271 PF04582 Reo_sigmaC: Reovirus 48.8 33 0.00072 42.1 6.2 14 390-403 141-154 (326)
272 PF08581 Tup_N: Tup N-terminal 48.4 78 0.0017 31.9 7.6 55 1010-1069 1-57 (79)
273 PF09738 DUF2051: Double stran 48.3 1.6E+02 0.0035 36.1 11.8 51 323-373 125-175 (302)
274 PRK10884 SH3 domain-containing 48.2 1.3E+02 0.0028 35.0 10.5 8 226-233 77-84 (206)
275 PF09744 Jnk-SapK_ap_N: JNK_SA 48.1 2.1E+02 0.0045 32.2 11.6 102 585-690 43-148 (158)
276 KOG0239|consensus 47.6 9.1E+02 0.02 33.0 21.5 31 23-53 24-61 (670)
277 cd00632 Prefoldin_beta Prefold 47.4 3.4E+02 0.0074 28.0 12.4 38 97-134 4-41 (105)
278 COG0497 RecN ATPase involved i 46.9 8.7E+02 0.019 32.6 23.7 68 1520-1589 167-234 (557)
279 PRK02119 hypothetical protein; 46.7 86 0.0019 31.0 7.5 54 1556-1613 2-55 (73)
280 PF12777 MT: Microtubule-bindi 46.1 1.5E+02 0.0032 36.5 11.2 94 188-300 220-313 (344)
281 KOG3759|consensus 44.9 20 0.00043 45.3 3.6 51 1793-1843 239-293 (621)
282 COG4026 Uncharacterized protei 44.7 1.5E+02 0.0032 35.1 10.1 14 36-49 15-28 (290)
283 PF12709 Kinetocho_Slk19: Cent 44.1 3.6E+02 0.0077 28.1 11.5 70 1645-1725 8-77 (87)
284 KOG0979|consensus 43.9 1.2E+03 0.026 33.3 51.1 35 746-780 813-847 (1072)
285 TIGR01010 BexC_CtrB_KpsE polys 43.7 7.1E+02 0.015 30.6 19.1 59 1671-1731 247-305 (362)
286 PRK03947 prefoldin subunit alp 43.4 3.4E+02 0.0074 29.1 12.1 46 322-367 92-137 (140)
287 PF10205 KLRAQ: Predicted coil 41.0 2.2E+02 0.0047 30.3 9.7 59 1670-1731 9-67 (102)
288 PF04582 Reo_sigmaC: Reovirus 40.5 48 0.001 40.8 5.8 78 285-366 77-154 (326)
289 PF12240 Angiomotin_C: Angiomo 40.2 3.9E+02 0.0085 31.4 12.4 80 1630-1720 3-87 (205)
290 PF15066 CAGE1: Cancer-associa 39.9 1E+03 0.022 31.3 27.0 48 195-254 389-436 (527)
291 PF06705 SF-assemblin: SF-asse 39.5 7E+02 0.015 29.4 31.5 44 323-366 174-218 (247)
292 PF05335 DUF745: Protein of un 39.0 6.8E+02 0.015 29.1 16.9 112 188-311 59-170 (188)
293 cd00632 Prefoldin_beta Prefold 38.9 2.2E+02 0.0048 29.3 9.5 44 649-692 60-103 (105)
294 PF12329 TMF_DNA_bd: TATA elem 38.7 2.5E+02 0.0054 27.9 9.3 48 241-288 17-64 (74)
295 PF10212 TTKRSYEDQ: Predicted 38.7 1.1E+03 0.024 31.4 18.2 24 141-164 178-201 (518)
296 PLN02939 transferase, transfer 37.7 1.4E+03 0.031 32.5 28.2 53 232-284 236-291 (977)
297 PRK10476 multidrug resistance 37.7 8.3E+02 0.018 29.7 15.7 41 1709-1752 188-232 (346)
298 PF05384 DegS: Sensor protein 37.3 6.7E+02 0.014 28.5 20.6 58 1654-1711 93-154 (159)
299 PF12761 End3: Actin cytoskele 37.2 2.3E+02 0.005 33.0 10.1 30 321-350 164-193 (195)
300 PF07058 Myosin_HC-like: Myosi 37.0 9.4E+02 0.02 30.1 15.7 81 1596-1688 36-137 (351)
301 PRK09841 cryptic autophosphory 37.0 1.1E+03 0.024 32.0 17.9 74 145-219 257-334 (726)
302 PF15254 CCDC14: Coiled-coil d 36.9 1.4E+03 0.029 32.0 30.7 32 388-419 567-606 (861)
303 KOG3091|consensus 36.4 6.5E+02 0.014 33.1 14.6 10 321-330 415-424 (508)
304 KOG0239|consensus 35.6 7.5E+02 0.016 33.7 15.8 57 436-498 363-421 (670)
305 COG1842 PspA Phage shock prote 35.5 8.3E+02 0.018 29.1 21.0 45 1508-1552 29-73 (225)
306 PF02994 Transposase_22: L1 tr 34.8 1.1E+02 0.0024 38.1 7.8 15 246-260 58-72 (370)
307 PRK02793 phi X174 lysis protei 34.7 1.7E+02 0.0037 28.9 7.5 50 1561-1614 6-55 (72)
308 PF12004 DUF3498: Domain of un 34.7 13 0.00028 47.7 0.0 117 593-732 370-492 (495)
309 PF01920 Prefoldin_2: Prefoldi 34.7 4.8E+02 0.01 26.1 11.9 36 99-134 5-40 (106)
310 KOG2991|consensus 34.5 9.5E+02 0.021 29.5 25.7 131 195-341 176-309 (330)
311 PF07106 TBPIP: Tat binding pr 34.5 6E+02 0.013 28.2 12.6 87 238-339 74-160 (169)
312 PRK09343 prefoldin subunit bet 34.4 6.1E+02 0.013 27.2 14.3 107 1600-1731 5-112 (121)
313 KOG2264|consensus 33.8 1.2E+02 0.0026 39.6 7.9 70 928-1001 79-148 (907)
314 PF04102 SlyX: SlyX; InterPro 33.6 1.3E+02 0.0029 29.2 6.5 51 1561-1615 2-52 (69)
315 PF07106 TBPIP: Tat binding pr 33.4 4.6E+02 0.01 29.0 11.5 65 98-169 71-137 (169)
316 PRK10361 DNA recombination pro 33.2 1.3E+03 0.027 30.5 24.9 90 1618-1719 104-194 (475)
317 KOG1937|consensus 32.6 1.3E+03 0.028 30.4 26.2 221 95-340 282-518 (521)
318 PF06005 DUF904: Protein of un 32.5 5.2E+02 0.011 25.8 10.8 44 248-291 9-52 (72)
319 PF05276 SH3BP5: SH3 domain-bi 32.3 9.6E+02 0.021 28.9 26.6 94 108-219 9-107 (239)
320 KOG1962|consensus 32.3 3.2E+02 0.0069 32.4 10.3 62 297-362 149-210 (216)
321 PF12329 TMF_DNA_bd: TATA elem 32.3 1.7E+02 0.0037 29.0 7.1 57 255-311 3-59 (74)
322 COG1561 Uncharacterized stress 32.0 6.3E+02 0.014 31.3 13.0 95 1504-1607 184-289 (290)
323 smart00502 BBC B-Box C-termina 31.9 5.4E+02 0.012 25.9 11.8 40 650-689 5-44 (127)
324 PRK00736 hypothetical protein; 31.7 2.1E+02 0.0045 28.1 7.5 49 1561-1613 3-51 (68)
325 PF15372 DUF4600: Domain of un 31.1 4.3E+02 0.0094 29.2 10.4 77 923-1005 13-89 (129)
326 TIGR02977 phageshock_pspA phag 31.0 9E+02 0.02 28.1 18.5 15 392-406 169-183 (219)
327 PRK12704 phosphodiesterase; Pr 30.9 1.4E+03 0.03 30.3 21.5 10 462-471 243-252 (520)
328 PRK04325 hypothetical protein; 30.5 2.3E+02 0.0049 28.2 7.6 50 1560-1613 6-55 (74)
329 COG1382 GimC Prefoldin, chaper 30.3 7.6E+02 0.017 27.1 12.8 95 591-692 5-110 (119)
330 PF14197 Cep57_CLD_2: Centroso 30.3 4.8E+02 0.01 25.8 9.7 61 242-302 4-64 (69)
331 PLN03188 kinesin-12 family pro 30.1 2E+03 0.044 32.0 31.1 61 1667-1727 1174-1234(1320)
332 PRK10698 phage shock protein P 29.5 9.9E+02 0.021 28.1 21.2 64 1652-1716 120-185 (222)
333 PRK11546 zraP zinc resistance 29.1 3.3E+02 0.0072 30.4 9.3 76 221-306 29-110 (143)
334 PF07544 Med9: RNA polymerase 28.8 1.8E+02 0.0038 29.3 6.7 58 1670-1727 25-82 (83)
335 PRK00295 hypothetical protein; 28.7 2.6E+02 0.0055 27.4 7.5 49 1561-1613 3-51 (68)
336 PF03962 Mnd1: Mnd1 family; I 28.4 5.8E+02 0.013 29.3 11.5 28 106-133 62-89 (188)
337 PF08826 DMPK_coil: DMPK coile 28.4 2.2E+02 0.0047 27.7 6.8 47 587-633 13-59 (61)
338 TIGR03545 conserved hypothetic 28.4 5.8E+02 0.013 33.9 12.9 8 480-487 325-332 (555)
339 PF10212 TTKRSYEDQ: Predicted 28.0 8E+02 0.017 32.6 13.6 30 328-357 484-513 (518)
340 PF05278 PEARLI-4: Arabidopsis 27.4 3.1E+02 0.0067 33.4 9.4 17 78-94 81-98 (269)
341 PF05384 DegS: Sensor protein 27.4 9.6E+02 0.021 27.3 21.1 49 323-371 104-152 (159)
342 PF14197 Cep57_CLD_2: Centroso 27.2 3E+02 0.0065 27.2 7.7 57 298-358 4-60 (69)
343 TIGR00998 8a0101 efflux pump m 26.5 1.2E+03 0.025 28.0 16.8 34 1716-1752 191-228 (334)
344 PRK04406 hypothetical protein; 26.2 2.9E+02 0.0063 27.7 7.5 49 1560-1612 8-56 (75)
345 PRK15422 septal ring assembly 25.9 7.5E+02 0.016 25.5 10.2 69 108-176 6-74 (79)
346 KOG1924|consensus 25.6 76 0.0017 42.8 4.4 9 1692-1700 476-484 (1102)
347 PF02994 Transposase_22: L1 tr 25.5 1.4E+02 0.0029 37.4 6.4 46 649-694 141-186 (370)
348 KOG2412|consensus 25.2 7.8E+02 0.017 32.8 12.7 115 1202-1342 134-252 (591)
349 PF05276 SH3BP5: SH3 domain-bi 24.9 1.3E+03 0.028 27.9 29.2 92 89-180 4-102 (239)
350 KOG0992|consensus 24.9 1.8E+03 0.038 29.6 27.2 250 895-1183 160-417 (613)
351 PF13747 DUF4164: Domain of un 24.8 7.8E+02 0.017 25.4 11.5 26 194-219 6-31 (89)
352 PF03148 Tektin: Tektin family 24.4 1.5E+03 0.033 28.6 29.1 270 578-868 43-357 (384)
353 PRK00846 hypothetical protein; 24.2 3.2E+02 0.007 27.7 7.4 52 1560-1615 10-61 (77)
354 PF07200 Mod_r: Modifier of ru 24.1 9.4E+02 0.02 26.0 16.3 92 203-307 55-146 (150)
355 PRK09841 cryptic autophosphory 23.8 2E+03 0.043 29.8 20.6 54 1671-1731 344-397 (726)
356 KOG4324|consensus 23.8 1.3E+02 0.0028 38.4 5.7 55 1673-1728 114-168 (476)
357 PRK11519 tyrosine kinase; Prov 23.7 2E+03 0.043 29.7 18.4 67 152-219 264-334 (719)
358 PF08647 BRE1: BRE1 E3 ubiquit 23.6 8.3E+02 0.018 25.2 12.9 54 250-303 24-77 (96)
359 PF15456 Uds1: Up-regulated Du 23.5 9.2E+02 0.02 26.4 11.2 87 1595-1682 22-111 (124)
360 KOG4403|consensus 23.4 1.8E+03 0.038 29.0 17.3 103 114-238 236-341 (575)
361 PF14712 Snapin_Pallidin: Snap 23.3 7.6E+02 0.016 24.7 11.4 77 91-174 13-90 (92)
362 TIGR02338 gimC_beta prefoldin, 22.9 8.9E+02 0.019 25.3 12.0 44 649-692 64-107 (110)
363 PF15035 Rootletin: Ciliary ro 22.8 1.2E+03 0.026 26.9 15.0 158 240-406 6-165 (182)
364 PF08826 DMPK_coil: DMPK coile 22.6 3.9E+02 0.0085 26.1 7.4 46 946-994 14-59 (61)
365 TIGR03752 conj_TIGR03752 integ 22.2 7.7E+02 0.017 32.4 11.9 81 1648-1730 62-142 (472)
366 PF10211 Ax_dynein_light: Axon 21.9 1.3E+03 0.027 26.7 12.5 31 281-311 123-153 (189)
367 PF04102 SlyX: SlyX; InterPro 21.8 3.4E+02 0.0073 26.5 6.9 50 323-372 3-52 (69)
368 PF08172 CASP_C: CASP C termin 21.6 5E+02 0.011 31.2 9.7 85 238-326 1-130 (248)
369 PF08657 DASH_Spc34: DASH comp 21.6 3.1E+02 0.0068 33.1 8.1 39 240-278 177-215 (259)
370 PF03962 Mnd1: Mnd1 family; I 21.4 1.3E+03 0.028 26.6 12.5 16 218-233 46-62 (188)
371 PF07798 DUF1640: Protein of u 21.4 1.2E+03 0.026 26.3 15.0 25 1009-1033 127-151 (177)
372 PF15290 Syntaphilin: Golgi-lo 21.3 1.3E+03 0.027 28.8 12.7 45 341-387 120-164 (305)
373 PF06428 Sec2p: GDP/GTP exchan 21.2 1.6E+02 0.0035 30.9 5.0 39 1337-1379 3-43 (100)
374 PF11570 E2R135: Coiled-coil r 21.0 1.2E+03 0.026 26.1 14.6 98 167-265 6-106 (136)
375 PF04899 MbeD_MobD: MbeD/MobD 20.9 6.7E+02 0.015 25.1 8.7 60 1543-1613 8-67 (70)
376 PF07989 Microtub_assoc: Micro 20.8 7E+02 0.015 25.1 9.0 68 233-300 4-72 (75)
377 TIGR03319 YmdA_YtgF conserved 20.8 2E+03 0.044 28.8 21.7 36 446-496 225-260 (514)
378 PF02050 FliJ: Flagellar FliJ 20.6 8.3E+02 0.018 24.1 14.5 111 239-353 1-116 (123)
379 KOG0972|consensus 20.5 1.7E+03 0.038 27.8 14.2 82 1535-1627 217-298 (384)
380 TIGR03752 conj_TIGR03752 integ 20.2 7.8E+02 0.017 32.3 11.4 35 1504-1545 60-94 (472)
381 PF06470 SMC_hinge: SMC protei 20.0 77 0.0017 32.0 2.5 37 431-472 80-117 (120)
No 1
>KOG0161|consensus
Probab=100.00 E-value=1.4e-113 Score=1115.65 Aligned_cols=968 Identities=26% Similarity=0.355 Sum_probs=941.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH---------hHHHHHHHHH
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK---------TLRNEIQELH 658 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~---------~l~~~i~el~ 658 (1857)
+-+++...+..++..+++++.+.+..+++||...+++..++++|..+|++ ++.+++++++ +++..++++.
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~ 914 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELK 914 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999 9999999998 9999999999
Q ss_pred HhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh---hhhhccCCCccchhhhhhhhhh----hHHHHHHHHhhhhhh
Q psy10988 659 AKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE---KFENQTGKDSVDIDTLIKNLQS----KKEELCRLLDEKNTL 731 (1857)
Q Consensus 659 ~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~---k~e~~~~~ek~~~~~~ik~l~~----~~e~i~kl~kEkk~l 731 (1857)
.+++++++.+..+..++++++++|++|++.|++++. |++. ++++++++|++|++ +++.|+||+++||.+
T Consensus 915 ~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~----Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l 990 (1930)
T KOG0161|consen 915 ERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLEL----EKNAAENKLKNLEEEINSLDENISKLSKEKKEL 990 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999 99999999999999 899999999999999
Q ss_pred hhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHh
Q psy10988 732 DNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERN 811 (1857)
Q Consensus 732 ~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~ 811 (1857)
+++ ++.+.++|+. +++|+++|+|.+++||++|+||+..++++++.|++++|.+|||||+++.+|++|+++...
T Consensus 991 Ee~------~~~l~~~l~~-~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 991 EER------IRELQDDLQA-EEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHH------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999 9999999999 999999999999999999999999999999999999999999999999999999998888
Q ss_pred ---HHHHhhhhhhhhhh-hhhchHH-------HHHhHH----------------------------HhHHHHHHHHHHHH
Q psy10988 812 ---LDEKLKEFNEKEIS-YNENIEA-------SNHKIQ----------------------------QLTQETDTLKAELV 852 (1857)
Q Consensus 812 ---l~e~lkk~~e~e~~-~~~~~e~-------~qkkik----------------------------dL~~Ele~l~~~L~ 852 (1857)
++..|+++ +.|++ +++++++ ++++|+ ||.+++++|+.+|+
T Consensus 1064 ~~el~~~l~kk-e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1064 KEELDNQLKKK-ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999 9999999 666666 99999999999999
Q ss_pred HhhchhhhhHHHHhhhhcCCcchh--hHHHHHHHHHhHHHhh-------------h-----hhhHHHHHHHHHHHHh---
Q psy10988 853 AQAESTQLVKQEQALLAAAPVDDN--IVIENQQLKQNLESVK-------------Q-----ENTLVVENLQNLIAQK--- 909 (1857)
Q Consensus 853 e~~~~t~~~~~~~~~~~~aq~e~n--re~e~~klrr~lEe~~-------------~-----e~~~~~~~lq~~k~~~--- 909 (1857)
++||+|. ||+++| +++|+++|+++|++.+ | +++.|++++++.|+++
T Consensus 1143 e~~~~t~-----------~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~leke 1211 (1930)
T KOG0161|consen 1143 EQGGTTA-----------AQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKE 1211 (1930)
T ss_pred HHhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999 9999999999999998 2 9999999999999999
Q ss_pred hHHHHHhhhHHHHHH-----------HHhHhHHHHHHHHHhhHHh---hhchhhhHHHHhhhhhHHHHHHHHHhhhhhhh
Q psy10988 910 DYEINAKVTELSIIM-----------EKCKQYEDKCIELESTLDA---KLTDFSTKEQLNKNKMAELSAMLESVQAENIS 975 (1857)
Q Consensus 910 k~~~~~e~~dl~~~~-----------~~~k~~E~~~~e~~~k~~~---~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~ 975 (1857)
|+.+.++++++...+ ++|+.||.++++++.++++ .++||+.++++++++++++.+++++.++ .
T Consensus 1212 k~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~---~ 1288 (1930)
T KOG0161|consen 1212 KSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA---K 1288 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH---H
Confidence 999999999999998 8999999999999999999 8999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH----HHHHhhhHHHH
Q psy10988 976 IKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ----DKLRSYTHVEN 1051 (1857)
Q Consensus 976 ~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q----~~~r~~~~~~~ 1051 (1857)
++++++.+++||+++++++++++++++.+. +|+++++++.|+|+.|++++++++ +++|.++++++
T Consensus 1289 ~~~~~r~~~~~~~qle~~k~qle~e~r~k~-----------~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1289 LSALSRDKQALESQLEELKRQLEEETREKS-----------ALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA 1357 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999 89999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHH
Q psy10988 1052 ELGQYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELL 1130 (1857)
Q Consensus 1052 e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~ 1130 (1857)
++++||+| |+.+++++.++ +++.|++ +.+++.++++++++|++|+ +||+++++|+
T Consensus 1358 e~~~~~~k-~e~~~~~~~ee------lee~kk~l~~~lq~~qe~~e~~~~~~~-----------------~Lek~k~~l~ 1413 (1930)
T KOG0161|consen 1358 ELAQWKKK-FEEEVLQRLEE------LEELKKKLQQRLQELEEQIEAANAKNA-----------------SLEKAKNRLQ 1413 (1930)
T ss_pred HHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 99999999 99999999999 9999999 9999999999999999999 9999999999
Q ss_pred hhhHHHHH---HhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy10988 1131 KQIQEESI---ASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLN 1207 (1857)
Q Consensus 1131 ~e~ed~~i---~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le 1207 (1857)
++++|+++ +.+.+++.|+++|+.||+.+++ ||.++++++.++|++++++|..+|++|++++.|+++.++++
T Consensus 1414 ~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e------~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e 1487 (1930)
T KOG0161|consen 1414 QELEDLQLDLERSRAAVAALEKKQKRFEKLLAE------WKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLE 1487 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999 8899999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccccCCCCcchhhhhhhhhhhhhhhHHHHHhhHhHHHHHHHHHHHHH-------HhhhhhhhHHHHHHh
Q psy10988 1208 EELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALE-------KHLSEKYQFEKEALE 1280 (1857)
Q Consensus 1208 ~~l~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~~El~k~~~~~e~e~~elq~ale-------~~e~~~~r~~~e~~q 1280 (1857)
+++|+|++++ .+|.||+ .+++++|+++|||+|.+|+++.++.+||++|+ .++++++|+++++.+
T Consensus 1488 -~l~renk~l~----~ei~dl~----~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1488 -ELRRENKNLS----QEIEDLE----EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQ 1558 (1930)
T ss_pred -HHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999 9999999 99999999999999999999999999999998 889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccchhHHHHHHhHHHHHHHHHHHHHhhhhhhHhhhhhhHhHHhh
Q psy10988 1281 LRTEDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQ 1360 (1857)
Q Consensus 1281 ~~~~~~~~~l~ekee~~e~~r~~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~mq~~L~~E~~~~~~e~~~~k~~~~~le~ 1360 (1857)
+|+ +++++|++|+++|+++| ++|++.| ++|+++|++|.++ +++++++|| |||+
T Consensus 1559 ~r~-e~er~l~ek~Ee~E~~r-------------------k~~~~~i---~~~q~~Le~E~r~-k~e~~r~KK---kle~ 1611 (1930)
T KOG0161|consen 1559 LRS-EIERRLQEKDEEIEELR-------------------KNLQRQL---ESLQAELEAETRS-KSEALRSKK---KLEG 1611 (1930)
T ss_pred HHH-HHHHHHHhhhHHHHHHH-------------------HHHHHHH---HHHHHhhhHHHHH-HHHHHhhhh---hhhc
Confidence 999 99999999999999999 9999999 9999999999999 999999999 9999
Q ss_pred hhHHHhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHhh
Q psy10988 1361 YNLQLSKSQESSTTL-TLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLK 1439 (1857)
Q Consensus 1361 ~~~~le~~l~~a~~~-~e~q~~~~~~k~l~~~lv~~v~~KH~Es~~Yh~eIqrLq~~L~ee~~~~eeL~eq~~~le~rl~ 1439 (1857)
|||+|+++++|||+. ++++ |++ +.||.+++++|.++++.++..+++.+++..+++|+.
T Consensus 1612 di~elE~~ld~ank~~~d~~------K~l---------------kk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~ 1670 (1930)
T KOG0161|consen 1612 DINELEIQLDHANKANEDAQ------KQL---------------KKLQAQLKELQRELEDAQRAREELLEQLAEAERRLA 1670 (1930)
T ss_pred chHHHHHHHHHHHHhhHHHH------HHH---------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 8888 888 999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhhcccCCCc--ccCcchhHhHHHHhhcccccc--hHHHHHHHHHHHHH
Q psy10988 1440 TTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPE--ADGEPAQEREVVAQHVAPVET--SRERNELALRLQNL 1515 (1857)
Q Consensus 1440 ~~~~~~~~~e~~~~~~~~~l~l~qae~EEl~~l~eq~er~r--Ae~El~eksE~v~~~~~~~~t--~~ERdklel~Lkql 1515 (1857)
.+++++++++...++.+|++ ||.++.|..|.++..+++ ++ ..++++++..|.++
T Consensus 1671 ---------------------~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~-~s~l~~~KrklE~~i~~l 1728 (1930)
T KOG0161|consen 1671 ---------------------ALQAELEELREKLEALERARRQAELELEELAERVNELNAQ-NSSLTAEKRKLEAEIAQL 1728 (1930)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHH
Confidence 88999999999999999999 999999999999998888 55 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHH----------HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10988 1516 QEEKTMLLTEINDLRLNQNTLYNENERLK----------QHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATA 1585 (1857)
Q Consensus 1516 Q~E~eelq~E~~~lrEKe~kl~~ELERLR----------~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A 1585 (1857)
+.++++.+.+.+.+.|+.++++.++.++. .|+..+.. .+|..+++|+.||++||..
T Consensus 1729 ~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~-------~LE~~~kdLq~rL~e~E~~------- 1794 (1930)
T KOG0161|consen 1729 QSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK-------SLERQVKDLQLRLDEAEQA------- 1794 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh-------
Confidence 99999999999999999999999999998 78888888 9999999999999999999
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy10988 1586 YTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSY 1665 (1857)
Q Consensus 1586 ~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~ 1665 (1857)
|..+++.+|.+|+.+|+.|+.++|.+..+...+.+.+++.+++++.|+ ||.++|++ +.+++++.+
T Consensus 1795 ---a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~-----~q~eed~k---~~~~~q~~~---- 1859 (1930)
T KOG0161|consen 1795 ---ALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQ-----FQVEEDKK---NIERLQDLV---- 1859 (1930)
T ss_pred ---hhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHH-----HHhhhhhh---HHHHHHHHH----
Confidence 999999999999999999999999999999999999999999999999 99999999 999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch
Q psy10988 1666 AKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVNNGGKVD 1737 (1857)
Q Consensus 1666 ~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~~egKVD 1737 (1857)
++++.++..|++||++|++. |+++...++..++.++++.++++.++..++.++.+++.....+.+|
T Consensus 1860 ---dkl~~k~~~~krQleeaE~~---~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r~~~~~~~~~ 1925 (1930)
T KOG0161|consen 1860 ---DKLQAKIKQYKRQLEEAEEE---ANQNLSKYRKLQRELEEAEERADTAESELNKLRSKLRSTGTKKPIG 1925 (1930)
T ss_pred ---HHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999998 9999999999999999999999999999999999999876325544
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=7.9e-93 Score=894.68 Aligned_cols=748 Identities=26% Similarity=0.355 Sum_probs=27.4
Q ss_pred HHHHhhhhhhhhhh-hhhchHH-------HHHhHH----------------------------HhHHHHHHHHHHHHHhh
Q psy10988 812 LDEKLKEFNEKEIS-YNENIEA-------SNHKIQ----------------------------QLTQETDTLKAELVAQA 855 (1857)
Q Consensus 812 l~e~lkk~~e~e~~-~~~~~e~-------~qkkik----------------------------dL~~Ele~l~~~L~e~~ 855 (1857)
|+..|+++ |+||+ +++++++ ++|+|+ ||++||++|+++|+++|
T Consensus 9 l~~~l~kk-e~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~ 87 (859)
T PF01576_consen 9 LEEQLKKK-EEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAG 87 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999 99999 9999999 888888 99999999999999999
Q ss_pred chhhhhHHHHhhhhcCCcchh--hHHHHHHHHHhHHHhh-------------h-----hhhHHHHHHHHHHHHh---hHH
Q psy10988 856 ESTQLVKQEQALLAAAPVDDN--IVIENQQLKQNLESVK-------------Q-----ENTLVVENLQNLIAQK---DYE 912 (1857)
Q Consensus 856 ~~t~~~~~~~~~~~~aq~e~n--re~e~~klrr~lEe~~-------------~-----e~~~~~~~lq~~k~~~---k~~ 912 (1857)
|+|+ ||+++| ||+||.+||++||+++ | +|+++||++++.|+++ |+.
T Consensus 88 ~~t~-----------aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~ 156 (859)
T PF01576_consen 88 GATQ-----------AQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQ 156 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999 9999999999999877 3 9999999999999999 999
Q ss_pred HHHhhhHHHHHH-----------HHhHhHHHHHHHHHhhHHh---hhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHH
Q psy10988 913 INAKVTELSIIM-----------EKCKQYEDKCIELESTLDA---KLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQ 978 (1857)
Q Consensus 913 ~~~e~~dl~~~~-----------~~~k~~E~~~~e~~~k~~~---~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q 978 (1857)
+.++++||++.+ +.||++|.++.++++++++ .++|++..++++++++++|+++|++.++ .+++
T Consensus 157 l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~---~~~~ 233 (859)
T PF01576_consen 157 LEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAES---QLSQ 233 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 999999999999 8899999999999999999 9999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH----HHHHhhhHHHHHHh
Q psy10988 979 MNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ----DKLRSYTHVENELG 1054 (1857)
Q Consensus 979 ~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q----~~~r~~~~~~~e~~ 1054 (1857)
+++.+..|++||++++++++++++.+. +|.+.++++.++++.|+++++++. ++++++++++.+|.
T Consensus 234 l~r~k~~L~~qLeelk~~leeEtr~k~-----------~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~ 302 (859)
T PF01576_consen 234 LQREKSSLESQLEELKRQLEEETRAKQ-----------ALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELE 302 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHhHhhhhh-----------hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999 999999999999999999999988 99999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHHhhh
Q psy10988 1055 QYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQI 1133 (1857)
Q Consensus 1055 q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~~e~ 1133 (1857)
+||+| |+++++.++++ ++++|+| ..+|.+++++++.++++|. +|+++|.+|++++
T Consensus 303 ~~k~K-~e~e~~~~~Ee------lEeaKKkL~~~L~el~e~le~~~~~~~-----------------~LeK~k~rL~~El 358 (859)
T PF01576_consen 303 QWKKK-YEEEAEQRTEE------LEEAKKKLERKLQELQEQLEEANAKVS-----------------SLEKTKKRLQGEL 358 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHHHhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Confidence 99999 99999999999 9999999 9999999999999999999 9999999999999
Q ss_pred HHHHH---HhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10988 1134 QEESI---ASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEEL 1210 (1857)
Q Consensus 1134 ed~~i---~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le~~l 1210 (1857)
+|+.+ ++++.++.|+|+|+.||+++++ ||.++.+++.+++++++++|.++|++|+|++.|+++.++++ .+
T Consensus 359 eDl~~eLe~~~~~~~~LeKKqr~fDk~l~e------~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e-~l 431 (859)
T PF01576_consen 359 EDLTSELEKAQAAAAELEKKQRKFDKQLAE------WKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE-EL 431 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH-HH
Confidence 99999 9999999999999999999999 99999999999999999999999999999999999999999 99
Q ss_pred hhhhhhccccccCCCCcchhhhhhhhhhhhhhhHHHHHhhHhHHHHHHHHHHHHH-------HhhhhhhhHHHHHHhhhh
Q psy10988 1211 ARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALE-------KHLSEKYQFEKEALELRT 1283 (1857)
Q Consensus 1211 ~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~~El~k~~~~~e~e~~elq~ale-------~~e~~~~r~~~e~~q~~~ 1283 (1857)
.|+|++|+ .+|.||+ ++++++|++||+|+|.+++++.++.+|+.+|+ ..+++++|++++++++|+
T Consensus 432 ere~k~L~----~El~dl~----~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 432 ERENKQLQ----DELEDLT----SQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ 503 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH----Hhhccch----hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999 99999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccchhHHHHHHhHHHHHHHHHHHHHhhhhhhHhhhhhhHhHHhhhhH
Q psy10988 1284 EDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQYNL 1363 (1857)
Q Consensus 1284 ~~~~~~l~ekee~~e~~r~~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~mq~~L~~E~~~~~~e~~~~k~~~~~le~~~~ 1363 (1857)
+|+|+|++|+++|+++| ++|++.| ++|+++|+.|.++ |++++++|+ |||++|+
T Consensus 504 -e~er~l~eKeeE~E~~R-------------------r~~qr~l---~~le~~LE~E~k~-r~~~~r~kk---KLE~~l~ 556 (859)
T PF01576_consen 504 -EIERELQEKEEEFEETR-------------------RNHQRQL---ESLEAELEEERKE-RAEALREKK---KLESDLN 556 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHhhhhHHHHHH-------------------HhhHHHH---HHHHhHHHHHHHH-HHHHHHHHH---HHHHHHH
Confidence 99999999999999999 9999999 9999999999999 999999999 9999999
Q ss_pred HHhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHhhhhh
Q psy10988 1364 QLSKSQESSTTL-TLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLKTTS 1442 (1857)
Q Consensus 1364 ~le~~l~~a~~~-~e~q~~~~~~k~l~~~lv~~v~~KH~Es~~Yh~eIqrLq~~L~ee~~~~eeL~eq~~~le~rl~~~~ 1442 (1857)
+|+++++|+|+. .+++ +++ +.|+.+|++++..|++..+.++++..++..++++++
T Consensus 557 eLe~~ld~~n~~~~e~~------k~~---------------kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~--- 612 (859)
T PF01576_consen 557 ELEIQLDHANRANEEAQ------KQL---------------KKLQAQLKDLQRELEEAQRAREELREQLAVSERRLR--- 612 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHhHHHHH------HHH---------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999 7777 777 999999999999999999999999999999999998
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHhhcccCCCc--ccCcchhHhHHHHhhcccccc--hHHHHHHHHHHHHHHHH
Q psy10988 1443 ETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPE--ADGEPAQEREVVAQHVAPVET--SRERNELALRLQNLQEE 1518 (1857)
Q Consensus 1443 ~~~~~~e~~~~~~~~~l~l~qae~EEl~~l~eq~er~r--Ae~El~eksE~v~~~~~~~~t--~~ERdklel~LkqlQ~E 1518 (1857)
.+++++++++...+++++++ |+.++.+..+.++.++.+ ++ ..++++++..+.+++.+
T Consensus 613 ------------------~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~-~~~l~~~kr~le~~i~~l~~e 673 (859)
T PF01576_consen 613 ------------------ALQAELEELREALEQAERARKQAESELDELQERLNELTSQ-NSSLSEEKRKLEAEIQQLEEE 673 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999 999999999999998877 44 67999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHH----------HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy10988 1519 KTMLLTEINDLRLNQNTLYNENERLK----------QHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTS 1588 (1857)
Q Consensus 1519 ~eelq~E~~~lrEKe~kl~~ELERLR----------~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~ts 1588 (1857)
+++.++++..+.++.+++..++++|+ +|+..+.. .+|..+++|+.||.++|..
T Consensus 674 leE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~-------~LE~q~keLq~rl~e~E~~---------- 736 (859)
T PF01576_consen 674 LEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKK-------ALERQVKELQARLEEAEQS---------- 736 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999999999998 67777777 9999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHh
Q psy10988 1589 ASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKN 1668 (1857)
Q Consensus 1589 As~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ 1668 (1857)
+..+|+.+|..|+.+|+.|+.+++.++++...+.+.++++.++++.|+ ||.++++. +..++++++
T Consensus 737 ~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~-----~q~ee~~k---~~~~~~d~~------- 801 (859)
T PF01576_consen 737 ALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQ-----FQVEEERK---NAERLQDLV------- 801 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHhHHH---HHHHHHHHH-------
Confidence 888999999999999999999999999999999999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 1669 NELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKE 1729 (1857)
Q Consensus 1669 ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~ 1729 (1857)
++|+.+|+.|++++++|++. |+++..++++.++.++++.+++++++..|++++.+.++
T Consensus 802 ~kl~~k~k~~krq~eeaEe~---~~~~~~k~Rk~q~elee~~e~~~~~e~~l~~lr~~~r~ 859 (859)
T PF01576_consen 802 DKLQLKLKQLKRQLEEAEEE---ASRNLAKYRKLQRELEEAEERAEAAERELNKLRAKSRS 859 (859)
T ss_dssp --------------------------------SSSSHHHHHTCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 89999999999999999998 99999999999999999999999999999999998763
No 3
>KOG0161|consensus
Probab=99.97 E-value=9.9e-20 Score=241.40 Aligned_cols=1020 Identities=21% Similarity=0.265 Sum_probs=553.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10988 88 FELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSL 167 (1857)
Q Consensus 88 ~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~L 167 (1857)
+--.|+|+.|..-.--|...... .+......++..+..++.+-+...+++......+..++..+.....--..-....
T Consensus 815 lr~w~W~~Lf~kvkPLL~~~~~e--e~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~a 892 (1930)
T KOG0161|consen 815 LRTWPWWRLFTKVKPLLKVTKTE--EEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEA 892 (1930)
T ss_pred hccCHHHHHHHHHHHHHHhhhhH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468888776544444332222 2233333444444444444444333333222233333333333322222222223
Q ss_pred HHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHH
Q psy10988 168 KDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEK 245 (1857)
Q Consensus 168 edK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~ 245 (1857)
+.....+...... +...+. ..++...+.....+..+....++++..+...+ +++...+.++..+.
T Consensus 893 ee~~~~~~~~k~~-le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~------------~~~E~~~~k~~~Ek 959 (1930)
T KOG0161|consen 893 EELLERLRAEKQE-LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQL------------EELELTLQKLELEK 959 (1930)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 3333333333333 333444 45555555555555666666666666666666 66666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHH
Q psy10988 246 QELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQD 325 (1857)
Q Consensus 246 ~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeq 325 (1857)
.....++..++.+|..++..+..+.++...++.-...+...+...+.++..+.+....+.+.+..+....+ .-+..
T Consensus 960 ~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le----~e~~~ 1035 (1930)
T KOG0161|consen 960 NAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE----REKRI 1035 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 66666666666666666666666555555555555555555555555555555555555555555555555 44566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhH
Q psy10988 326 IEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQL 405 (1857)
Q Consensus 326 LeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~ 405 (1857)
..++++.+..+...+......+..+......+..++...+-++..+.. .+.....-+..++..++.|.+.|..+..-+
T Consensus 1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~--k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQS--KLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777888888777888887888888888888888888888888 888888888888888888888888887777
Q ss_pred HHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhhhccCCCCccc
Q psy10988 406 LSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSS 485 (1857)
Q Consensus 406 ~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L~~nekGra~f 485 (1857)
++-+....+.+ .-.+|+-. +|...-+- |++-+... ..-
T Consensus 1114 e~er~~r~K~e-----------------k~r~dL~~----ele~l~~~--Lee~~~~t-------------------~~q 1151 (1930)
T KOG0161|consen 1114 EAERASRAKAE-----------------RQRRDLSE----ELEELKEE--LEEQGGTT-------------------AAQ 1151 (1930)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHH----HHHHHHHH--HHHHhhhH-------------------HHH
Confidence 76666665221 12333333 11111111 11110000 000
Q ss_pred ccCcchhhhhhhhHhhhhhhhHHHHHHHHHHHHHhccCCCCCCCcchhhhhhhhhHHHhhhccchhhhhHhhhceeeecc
Q psy10988 486 SDLNTLREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENN 565 (1857)
Q Consensus 486 f~Ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1857)
.-++..++ .=+.+|+..|+-+. +. .+.-+..+.
T Consensus 1152 ~e~~~k~e-------------~e~~~l~~~leee~---~~-----------~e~~~~~lr-------------------- 1184 (1930)
T KOG0161|consen 1152 LELNKKRE-------------AEVQKLRRDLEEET---LD-----------HEAQIEELR-------------------- 1184 (1930)
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHHH---Hh-----------HHHHHHHHH--------------------
Confidence 00111111 11233333333221 10 111111111
Q ss_pred ccccCCCCCcccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccch
Q psy10988 566 YVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDD 644 (1857)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d 644 (1857)
.+....|+.+.. .++..-.....++.....|..+-.+|..++.. .-..++
T Consensus 1185 ----------------------~~~~~~~~el~~-------qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~ 1235 (1930)
T KOG0161|consen 1185 ----------------------KKHADSLAELQE-------QLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKD 1235 (1930)
T ss_pred ----------------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 122222333333 33333333333344444444444455555544 222233
Q ss_pred hHh--HhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhhhHHHHH
Q psy10988 645 SIE--KTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELC 722 (1857)
Q Consensus 645 ~ee--~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~~~e~i~ 722 (1857)
.+- +.++..+.++..++.+.....+.+...+-++..++.+|.+.+++.+.++.. -..+..+.-..|++...+++
T Consensus 1236 ~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~----~~r~~~~~~~qle~~k~qle 1311 (1930)
T KOG0161|consen 1236 LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSA----LSRDKQALESQLEELKRQLE 1311 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 333 378999999999999999999999999999999999999999999986655 22233334444555677777
Q ss_pred HHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHH
Q psy10988 723 RLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQ 802 (1857)
Q Consensus 723 kl~kEkk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~q 802 (1857)
.-.+.+-++..+ +++.-.+ ...++..+|-..++.++-..+=.+...++-.+++|++++.....
T Consensus 1312 ~e~r~k~~l~~~------l~~l~~e-----------~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~ 1374 (1930)
T KOG0161|consen 1312 EETREKSALENA------LRQLEHE-----------LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRL 1374 (1930)
T ss_pred HHHHHHHHHHHH------HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666 4433333 34466677777777777777777888888899999999888877
Q ss_pred HHHHHHHHhHHHHhhhhhhhhhh-hhhchHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchhhHHHH
Q psy10988 803 RSILDLERNLDEKLKEFNEKEIS-YNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIEN 881 (1857)
Q Consensus 803 e~i~dle~~l~e~lkk~~e~e~~-~~~~~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~nre~e~ 881 (1857)
+.+.+..+.+...+-.. +..+- ++.+...+.+-...|..|++.+.-.++....+|+
T Consensus 1375 eelee~kk~l~~~lq~~-qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~---------------------- 1431 (1930)
T KOG0161|consen 1375 EELEELKKKLQQRLQEL-EEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA---------------------- 1431 (1930)
T ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------------------
Confidence 87777776666666655 55555 5555555555555666666665555555555554
Q ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHhHhHHHHHHHHHhhHHh----------hhchhhhH
Q psy10988 882 QQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIELESTLDA----------KLTDFSTK 951 (1857)
Q Consensus 882 ~klrr~lEe~~~e~~~~~~~lq~~k~~~k~~~~~e~~dl~~~~~~~k~~E~~~~e~~~k~~~----------~~~d~~~~ 951 (1857)
.+. ++-++++..|++.+.+++. ......+.
T Consensus 1432 ------------~le----------------------------~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~te 1471 (1930)
T KOG0161|consen 1432 ------------ALE----------------------------KKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTE 1471 (1930)
T ss_pred ------------HHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 111 2223333333333333322 12222333
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHH
Q psy10988 952 EQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQT 1031 (1857)
Q Consensus 952 ~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~ 1031 (1857)
..++.+.+.++..+++.+.. ..+.+..++..++.++.++-+.+.+ |-...+.+.-.+..
T Consensus 1472 l~kl~~~lee~~e~~e~l~r---enk~l~~ei~dl~~~~~e~~k~v~e------------------lek~~r~le~e~~e 1530 (1930)
T KOG0161|consen 1472 LQKLKNALEELLEQLEELRR---ENKNLSQEIEDLEEQKDEGGKRVHE------------------LEKEKRRLEQEKEE 1530 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 33333443343333333333 2222223333333333332211111 11122333333334
Q ss_pred HHHHHHHHH-HHHHhhhH---HHHHHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHhHHhh-hhhhhhh
Q psy10988 1032 LEIQVKELQ-DKLRSYTH---VENELGQYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQLDTY-NAKITHA 1105 (1857)
Q Consensus 1032 l~e~~ee~q-~~~r~~~~---~~~e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~~~~~-n~k~~~~ 1105 (1857)
|+-+++|.. .++-.-++ +..++++.|+. ++-.-..+.++ +++.++. +..+..++..+++- .+|.
T Consensus 1531 lQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek~Ee------~E~~rk~~~~~i~~~q~~Le~E~r~k~--- 1600 (1930)
T KOG0161|consen 1531 LQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEKDEE------IEELRKNLQRQLESLQAELEAETRSKS--- 1600 (1930)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhhhHH------HHHHHHHHHHHHHHHHHhhhHHHHHHH---
Confidence 444444443 11111111 44456666666 55444445555 6666666 66666666544421 1111
Q ss_pred HHHHHHhhhhhhhhcchHHHHHHHHhhhHHHHH---HhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHH
Q psy10988 1106 ALVEQELGEMKNQMQTLEYEKQELLKQIQEESI---ASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQL 1182 (1857)
Q Consensus 1106 ~~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i---~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ 1182 (1857)
..=+.|.+|.++|.++.+ -||.....+.|.=+..-..+-+ -...+++++.-.+...
T Consensus 1601 ---------------e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~------lq~~~e~~~~~~~e~~ 1659 (1930)
T KOG0161|consen 1601 ---------------EALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKE------LQRELEDAQRAREELL 1659 (1930)
T ss_pred ---------------HHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHH
Confidence 122334467777777777 4555555554444333333333 3334444444444444
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCcchhhhhhhhhhhhhhh-------HHHHHhhHhHHH
Q psy10988 1183 KELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENILKEKDATL-------SEMLKKSEAKDK 1255 (1857)
Q Consensus 1183 ke~r~~~te~~~~~~~~ee~~~~le~~l~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~-------~El~k~~~~~e~ 1255 (1857)
.-++..+.++--+....++....++ .+-|..+.+. .+..+++ +.+...-... .+|+...-.++.
T Consensus 1660 ~q~~~aerr~~~l~~E~eeL~~~l~-~~~Rarr~aE----~e~~E~~----e~i~~~~~~~s~l~~~KrklE~~i~~l~~ 1730 (1930)
T KOG0161|consen 1660 EQLAEAERRLAALQAELEELREKLE-ALERARRQAE----LELEELA----ERVNELNAQNSSLTAEKRKLEAEIAQLQS 1730 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhH----HHHHHHH----HHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence 4444444555555555555555666 6666666666 6666766 3333322222 244444444444
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccchhHHHHHHhHHHHHHH
Q psy10988 1256 TLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNE 1335 (1857)
Q Consensus 1256 e~~elq~ale~~e~~~~r~~~e~~q~~~~~~~~~l~ekee~~e~~r~~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~mq~ 1335 (1857)
++.+-+..+.....+.=.++..+.++-. ++. .=++.--..+..| .+..+++ .+++.
T Consensus 1731 elee~~~~~~~~~Er~kka~~~a~~~~~-el~-~Eq~~~~~le~~k-------------------~~LE~~~---kdLq~ 1786 (1930)
T KOG0161|consen 1731 ELEEEQSELRAAEERAKKAQADAAKLAE-ELR-KEQETSQKLERLK-------------------KSLERQV---KDLQL 1786 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHH-HHH-HHHHHHHHHHHHH-------------------HHHHHHH---HHHHH
Confidence 4444444444445555555555665555 441 1122222344444 5666666 34444
Q ss_pred HHHHHHhhhhhhHhhhhhhHhHHhhhhHHHhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHH
Q psy10988 1336 SLQNEVLRSATEIDNMKETITYLEQYNLQLSKSQESSTTL-TLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLN 1414 (1857)
Q Consensus 1336 ~L~~E~~~~~~e~~~~k~~~~~le~~~~~le~~l~~a~~~-~e~q~~~~~~k~l~~~lv~~v~~KH~Es~~Yh~eIqrLq 1414 (1857)
-|+. +- .+-..+-|+.|.+||..|-+||.+|+...+- ++++ +.+ +++---|++++
T Consensus 1787 rL~e-~E--~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~------k~~---------------rk~er~vkEl~ 1842 (1930)
T KOG0161|consen 1787 RLDE-AE--QAALKGGKKQIAKLEARIRELESELEGEQRRKAEAI------KGL---------------RKKERRVKELQ 1842 (1930)
T ss_pred HHHH-HH--HhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHh------HHH---------------HHHHHHHHHHH
Confidence 4432 11 1223366788999999999999999999998 6666 777 89999999999
Q ss_pred HHhhhhchhhhhhhhHHHHHHHHhh
Q psy10988 1415 GILSEELPKLKDLGGQVATLEKQLK 1439 (1857)
Q Consensus 1415 ~~L~ee~~~~eeL~eq~~~le~rl~ 1439 (1857)
.++++..+..+-+..++..+..++.
T Consensus 1843 ~q~eed~k~~~~~q~~~dkl~~k~~ 1867 (1930)
T KOG0161|consen 1843 FQVEEDKKNIERLQDLVDKLQAKIK 1867 (1930)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888877776
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.97 E-value=6.3e-23 Score=264.90 Aligned_cols=150 Identities=20% Similarity=0.239 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhh-
Q psy10988 326 IEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQ- 404 (1857)
Q Consensus 326 LeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf- 404 (1857)
+..+...+..+...+......++.+...+..+...+..++.++..+.. .+......+..++.++..++..++.++|+
T Consensus 429 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~--~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~ 506 (1164)
T TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE--EYDRVEKELSKLQRELAEAEAQARASEERV 506 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333333333333333333333333333444444444444444444 44444444444555555555554455542
Q ss_pred -H-HHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccC
Q psy10988 405 -L-LSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNE 479 (1857)
Q Consensus 405 -~-~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~ne 479 (1857)
+ .+++.++. .. ..|+.|.|+|+|. |++.|.+||++ +||+.+.++||++.++|. .||+.+.
T Consensus 507 ~~~~~i~~~~~-----------~~--~~g~~g~l~dli~-v~~~y~~Aie~-~lg~~l~~ivv~~~~~a~~~i~~l~~~~ 571 (1164)
T TIGR02169 507 RGGRAVEEVLK-----------AS--IQGVHGTVAQLGS-VGERYATAIEV-AAGNRLNNVVVEDDAVAKEAIELLKRRK 571 (1164)
T ss_pred cchHHHHHHHh-----------cC--CCCceecHHHhcC-cCHHHHHHHHH-HhhhhhCCEEECCHHHHHHHHHHHHhcC
Confidence 2 45555544 11 3466678999999 99999999999 999999999999988877 9999999
Q ss_pred CCCcccccCcchh
Q psy10988 480 WGSPSSSDLNTLR 492 (1857)
Q Consensus 480 kGra~ff~Ld~~~ 492 (1857)
+|+++|+||+.++
T Consensus 572 ~gr~tflpl~~~~ 584 (1164)
T TIGR02169 572 AGRATFLPLNKMR 584 (1164)
T ss_pred CCCeeeccHhhcC
Confidence 9999999999876
No 5
>KOG4674|consensus
Probab=99.95 E-value=2.5e-15 Score=197.56 Aligned_cols=1057 Identities=21% Similarity=0.276 Sum_probs=545.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10988 90 LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKD 169 (1857)
Q Consensus 90 ~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~Led 169 (1857)
+|-.+......+..+...+..++.++..+...+-++++.+++.....-.++..+.-++++..-+.+++..++..+....+
T Consensus 127 l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~e 206 (1822)
T KOG4674|consen 127 LMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNE 206 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455555666666666666666666666666666666666666644444466667777777777888888888888888
Q ss_pred HHhhhhHh----hhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC-------------
Q psy10988 170 KLRDLDEN----VTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGA------------- 230 (1857)
Q Consensus 170 K~~~L~eE----Ie~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~------------- 230 (1857)
++..+..+ +.. +..++. ...+......+..+......+...+..+...+ -|-.|+...
T Consensus 207 kll~~~re~s~~~~~-L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~l--s~~k~t~~s~~~kf~~El~~q~ 283 (1822)
T KOG4674|consen 207 KLLSLRREHSIEVEQ-LEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLEL--SKLKDTAESSEEKFEKELSTQK 283 (1822)
T ss_pred HHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHH
Confidence 77777777 555 555555 44444444444444444444433333333333 111111100
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 231 --SDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQEL 308 (1857)
Q Consensus 231 --~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eel 308 (1857)
++-++..++....++.++++.|..+++.+......... ..+.+..-...++.+...+++++..+++.++..+-.+
T Consensus 284 kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e---~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~ 360 (1822)
T KOG4674|consen 284 KLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKE---NTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSL 360 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 12223333333344444444444444433333332221 1222233334444445555566666665555555444
Q ss_pred hh-hhh-----------ccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy10988 309 EG-WTD-----------NDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDS 376 (1857)
Q Consensus 309 E~-Lqq-----------e~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~ 376 (1857)
.. ... ..- ...-++..+-..+..+...+....-.++.++..+.....++..+.-.+..-+. .
T Consensus 361 ~~~~~~~~~s~~~a~~s~~~----~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~--~ 434 (1822)
T KOG4674|consen 361 SATGESSMVSEKAALASSLI----RPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRS--E 434 (1822)
T ss_pred HhhcccchhhhHHHHHHhhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--H
Confidence 43 000 111 22334455555555555555555555555555555555555555555555555 5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchhHHHHHHHhhH
Q psy10988 377 WGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQ 456 (1857)
Q Consensus 377 L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eEy~~AVE~~~L 456 (1857)
+......+..+-.++.-....+-.++.+....+.-+..+.+++--. ... ..-++.-+. |-+..-..+..
T Consensus 435 ~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l------~~~-~sdlsrqv~-~Ll~el~e~~~--- 503 (1822)
T KOG4674|consen 435 LERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLL------EQQ-ISDLSRQVN-VLLLELDELRK--- 503 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHHHH-HHHHHHHHHHh---
Confidence 5555555555555555666666666665555444444221111000 000 001122121 11111111111
Q ss_pred HHHhchheecCch-----HHhHhhhccCCCCcccccCcchhhhhhhhHhhhhhhhHHHHHHHHHHHHHhccCCCC-----
Q psy10988 457 EELLKQALIDKEN-----ELSEWGQTNEWGSPSSSDLNTLREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSH----- 526 (1857)
Q Consensus 457 ee~L~~~VVd~~d-----ea~e~L~~nekGra~ff~Ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 526 (1857)
+..++++... +...+++.+ =|.|.....|-+-- .+--..+.-|-..+|++-+.+-+-
T Consensus 504 ---~~~~~~~s~~~~~es~S~~iIse~---Lv~F~nI~eLqekN-------~eLL~~vR~Lae~lE~~E~~~~~~~~~~~ 570 (1822)
T KOG4674|consen 504 ---GSKITVSSDSTENESDSEEIISER---LVEFSNINELQEKN-------VELLNAVRELAEKLEAAEKTQDKTLQNIL 570 (1822)
T ss_pred ---hhhcccCccccccCccHHHHHHHH---HHHhccHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 1222222221 000122210 02222222222211 111223344444455443321110
Q ss_pred ---CC-------CcchhhhhhhhhHHHhhhccchhhhhHhhhceeeeccccccCCCCCcccchhhhhhhhhhhccHHHHH
Q psy10988 527 ---SH-------PVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTV 596 (1857)
Q Consensus 527 ---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1857)
+- -+--...+-+.||+-|-++-.-+| .+-.-.+++. -+-|--++++-|-.-.+ +..-|..
T Consensus 571 k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~----e~l~~~e~~~--~~k~nss~~~~t~~~~~----~e~~l~q 640 (1822)
T KOG4674|consen 571 KETINEASEKIAELEKELEEQEQRIESLLTERDMYK----ELLAELEDSH--QLKPNSSALDQTEAPRA----KEKRLRQ 640 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhcccccc--cCCCCchhhcccccchh----HHHHHHH
Confidence 00 011123344556666665555444 2222222221 12233333333332222 3455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH--hHHHHHHHHHHhhhhHHHhhHHHHH
Q psy10988 597 LSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK--TLRNEIQELHAKLINVEALVNQAQV 673 (1857)
Q Consensus 597 ~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~--~l~~~i~el~~rl~~~E~~~~~l~~ 673 (1857)
+..++.-.+ ....+..+-+++.+..|..+..+++.+|.. .....=|.|+ -|.+.|--+.+.....++++..++.
T Consensus 641 Le~~le~~~---~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~ 717 (1822)
T KOG4674|consen 641 LENELESYK---KEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQS 717 (1822)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555433 344556677889999999999999999988 5555556666 4444444444444444455555544
Q ss_pred HHHhhhHHHHHHHHhHHHhhhhhhhccCC-Cccchhhhhhhhhh--hHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhh
Q psy10988 674 EKQALDGKYEELKEKYEQMSEKFENQTGK-DSVDIDTLIKNLQS--KKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNT 750 (1857)
Q Consensus 674 ~k~kle~~~~eLk~~~e~~e~k~e~~~~~-ek~~~~~~ik~l~~--~~e~i~kl~kEkk~l~e~~~~~~~~~~~ld~l~~ 750 (1857)
---+-+..+..+...+-.-..|++.-.+- +.---++.+..... +.....+|..++. .++..+++||+
T Consensus 718 ~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~----------~L~~~l~~lQt 787 (1822)
T KOG4674|consen 718 TISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQE----------SLQLLLDNLQT 787 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 44444444443333333222222220000 00000111111111 3344444444443 36778888888
Q ss_pred hhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhh----hhhhHHHhhhhhhhchHHHHHHHHHHHHhHHH---Hhhhhhhhh
Q psy10988 751 NYQDKINTLIQSKNDLEAKISELNNAQHNKNN----EINDLNKRISLFEENNAFLQRSILDLERNLDE---KLKEFNEKE 823 (1857)
Q Consensus 751 ~eedK~n~l~k~k~klE~~i~dle~~l~~e~~----~r~dlek~krk~E~~~~~~qe~i~dle~~l~e---~lkk~~e~e 823 (1857)
-...---+....|.+++++|++|++.|..=++ .+.++....+.+.-++.-+|-.|.++..+++. .|... ..+
T Consensus 788 ~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~-~~~ 866 (1822)
T KOG4674|consen 788 QKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSV-STN 866 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 55555556778899999999999999876554 35566677777888888888888888888443 33333 333
Q ss_pred hhhhhchHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchhhHHHHHHHHHhHHHhhh----------
Q psy10988 824 ISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNLESVKQ---------- 893 (1857)
Q Consensus 824 ~~~~~~~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~nre~e~~klrr~lEe~~~---------- 893 (1857)
|. -+.-++.+|.-.|...+.++.--+.- .+..+++.-+.+ ||..++.++-
T Consensus 867 ~~------~le~k~~eL~k~l~~~~~~~~~l~~~-------~~~~d~~~~~~~-------Lr~~~eq~~~l~~~L~~a~s 926 (1822)
T KOG4674|consen 867 IA------KLEIKLSELEKRLKSAKTQLLNLDSK-------SSNEDATILEDT-------LRKELEEITDLKEELTDALS 926 (1822)
T ss_pred HH------HHHHHHHHHHHHHHHhHHHHhhcccc-------chhhhhhhhhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33 33333334444444444433322210 011111111111 4444444430
Q ss_pred -------hhhHHHHHHHHHHHHh---hHHHHHhhhHHHHHHHHhHhHHHHHHHHHhhHHhhhchhhhHHHHhhhhhHHHH
Q psy10988 894 -------ENTLVVENLQNLIAQK---DYEINAKVTELSIIMEKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELS 963 (1857)
Q Consensus 894 -------e~~~~~~~lq~~k~~~---k~~~~~e~~dl~~~~~~~k~~E~~~~e~~~k~~~~~~d~~~~~~~~~~e~~el~ 963 (1857)
...-.=..|..++..+ +..+.+.+..+. +....+|..+++|+..+...-.++.........++.+++
T Consensus 927 ~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~---~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~ 1003 (1822)
T KOG4674|consen 927 QIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLH---KKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLS 1003 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 1111112334444444 444444454444 667778888888877777766666666666667777777
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHh----hhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHH
Q psy10988 964 AMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRK----ILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKEL 1039 (1857)
Q Consensus 964 ~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k----~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~ 1039 (1857)
+++..+..++..+ .....+.-.++..+++.++.+++ +.+.|-+++. ..-.-....
T Consensus 1004 ~e~~sl~ne~~~~---~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~------------------~ha~~~q~l 1062 (1822)
T KOG4674|consen 1004 REISSLQNELKSL---LKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELV------------------QHADLTQKL 1062 (1822)
T ss_pred HHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 7777777744332 22233333444445555554443 4444444443 333333444
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhh
Q psy10988 1040 QDKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQ 1118 (1857)
Q Consensus 1040 q~~~r~~~~~~~e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~ 1118 (1857)
+.+-..+.+++.++...+.. ++ ..+. . +.++.++ .-+=..+...+.-.+.+|.
T Consensus 1063 ~kl~ee~~~~~~e~~~Lk~~-~~--~~~~--~------l~e~~~~w~E~~~~Leqe~~~~~~~~~--------------- 1116 (1822)
T KOG4674|consen 1063 IKLREEFAKCNDELLKLKKS-RE--SRHA--L------LSEQERDWSEKEDALEQEVNELKKRIE--------------- 1116 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhh-HH--HHHh--H------HhhcccchHHHHHHHHHHHHHHHHHHH---------------
Confidence 55566777888888887777 22 2222 2 4455555 4445567777777888888
Q ss_pred hcchHHHHHHHHhhhHHHHHHhHH--hHHHHHh---hhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhhhhh
Q psy10988 1119 MQTLEYEKQELLKQIQEESIASNF--LKNELQS---LQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYK 1193 (1857)
Q Consensus 1119 ~~~le~~k~~L~~e~ed~~i~~n~--~~~~l~k---kQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ke~r~~~te~~ 1193 (1857)
+|+..-+=|-..|++.+-.++. ..+.... ++.-|..+ +..-+-.-..++.+.+|.+.+.+++-
T Consensus 1117 --~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~L----------R~Ekei~~tk~~~lk~e~~~L~qq~~ 1184 (1822)
T KOG4674|consen 1117 --SLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFL----------RKEKEIAETKLDTLKRENARLKQQVA 1184 (1822)
T ss_pred --HHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH----------HhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988775442 2222222 33333332 33444556678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccCCCCcchhhhh--hhhhhhhhhhHHHHHhhHhHHHHHHHHHHHHHHhhhhh
Q psy10988 1194 QMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIE--NILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEK 1271 (1857)
Q Consensus 1194 ~~~~~~ee~~~~le~~l~renk~l~~~~~~e~~dl~~~~~--~~l~e~~~~~~El~k~~~~~e~e~~elq~ale~~e~~~ 1271 (1857)
.+...++++++.|... |.-..-...+..+..++..-+. |.|.|..+.+ -+-..+...-++||+..+++..-.+
T Consensus 1185 ~~~k~i~dL~~sL~~~--r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~L---Ree~~~~~~k~qEl~~~i~kl~~el 1259 (1822)
T KOG4674|consen 1185 SLNRTIDDLQRSLTAE--RASSQKSAVSDDEHKEILEKVEEVNLLRESNKVL---REENEANLEKIQELRDKIEKLNFEL 1259 (1822)
T ss_pred HHHHHHHHHHHHHHHH--HHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999832 2222222234456666651111 2333444444 3445566677799999999999999
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHH
Q psy10988 1272 YQFEKEALELRTEDLEYKLQEKE 1294 (1857)
Q Consensus 1272 ~r~~~e~~q~~~~~~~~~l~eke 1294 (1857)
..|+.++.++.+ +|.-.-++..
T Consensus 1260 ~plq~~l~el~~-e~~~~~ael~ 1281 (1822)
T KOG4674|consen 1260 APLQNELKELKA-ELQEKVAELK 1281 (1822)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHH
Confidence 999999988887 5444444333
No 6
>KOG4674|consensus
Probab=99.93 E-value=4.4e-13 Score=176.96 Aligned_cols=428 Identities=21% Similarity=0.268 Sum_probs=221.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH-----------------
Q psy10988 587 KERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK----------------- 648 (1857)
Q Consensus 587 ~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~----------------- 648 (1857)
+--+-++.....+++..++..+....+.+..++-++.-+....+||..|+.- -..+++....
T Consensus 442 ~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~ 521 (1822)
T KOG4674|consen 442 KAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSE 521 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHH
Confidence 3445667777788888888888888888888888888888888888888722 1111111111
Q ss_pred ---------------------hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccch
Q psy10988 649 ---------------------TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDI 707 (1857)
Q Consensus 649 ---------------------~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~ 707 (1857)
.|.+.+.+|.++++..|.-+ ...-..-+...|.++...|..++.
T Consensus 522 ~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~--~~~~~~~~k~~~~~a~e~i~~L~~------------- 586 (1822)
T KOG4674|consen 522 EIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQ--DKTLQNILKETINEASEKIAELEK------------- 586 (1822)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 34444444444444433322 111112222333333333333222
Q ss_pred hhhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhh--HHHhHHHHHHHHHhhhhhhh
Q psy10988 708 DTLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKND--LEAKISELNNAQHNKNNEIN 785 (1857)
Q Consensus 708 ~~~ik~l~~~~e~i~kl~kEkk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~k--lE~~i~dle~~l~~e~~~r~ 785 (1857)
-|++....|.-|.++..-+-+. |.-..|+-+- ..=.+.+.....- .+..|.+|++.++.-++.
T Consensus 587 -----~l~e~~~~i~sLl~erd~y~e~------l~~~e~~~~~--k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E-- 651 (1822)
T KOG4674|consen 587 -----ELEEQEQRIESLLTERDMYKEL------LAELEDSHQL--KPNSSALDQTEAPRAKEKRLRQLENELESYKKE-- 651 (1822)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHh------hhcccccccC--CCCchhhcccccchhHHHHHHHHHHHHHHHHHH--
Confidence 1111222233333332222111 2211111000 0001223333333 588999999988843332
Q ss_pred hHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhhhhhhh-hhhchHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHH
Q psy10988 786 DLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEIS-YNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQE 864 (1857)
Q Consensus 786 dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~e~e~~-~~~~~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~ 864 (1857)
-....+++..++.-++.++-+ +...|.+. ..+.. ...+++.|.+-|--+-+|.++|.+|--.--..++--++.
T Consensus 652 -~~~~~~~l~e~~~~l~~ev~~----ir~~l~k~-~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~ 725 (1822)
T KOG4674|consen 652 -KRENLKKLQEDFDSLQKEVTA----IRSQLEKL-KNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQT 725 (1822)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH----HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344555555555555544 44455555 56666 667788888888888888888888777666665533332
Q ss_pred Hhh----hhcCCcchh-hHHHHHHHHHhHHHhhh---hhhHHHHHHHHHHHHhhHHHHHhhhHHHHHH--------HHhH
Q psy10988 865 QAL----LAAAPVDDN-IVIENQQLKQNLESVKQ---ENTLVVENLQNLIAQKDYEINAKVTELSIIM--------EKCK 928 (1857)
Q Consensus 865 ~~~----~~~aq~e~n-re~e~~klrr~lEe~~~---e~~~~~~~lq~~k~~~k~~~~~e~~dl~~~~--------~~~k 928 (1857)
... |-+|-..+- -++|+..||++=.-.++ -|...+++|-+- .+.+.+-+++|.++. ....
T Consensus 726 ~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e----~~~L~~~l~~lQt~~~~~e~s~~~~k~ 801 (1822)
T KOG4674|consen 726 VHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAE----QESLQLLLDNLQTQKNELEESEMATKD 801 (1822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 122333333 56666667666554443 222222222211 455555566665444 4444
Q ss_pred hHHHHHHHHHhhHHhhhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHH
Q psy10988 929 QYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYK 1008 (1857)
Q Consensus 929 ~~E~~~~e~~~k~~~~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~ 1008 (1857)
.+|.++-+|.--+.....++......+..=++.+..+|+.... .|..+......+...+...+-.+ +...
T Consensus 802 ~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~---~i~~~~~~~~~~~~~l~~~~~~~-------~~le 871 (1822)
T KOG4674|consen 802 KCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQN---LVDELESELKSLLTSLDSVSTNI-------AKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 5555555544444444444555555555555566666666666 55555555554444444333211 1222
Q ss_pred HHHHhhhHHHHHH------------HHhhhhhhHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhHHH
Q psy10988 1009 QRVQELDAKLAEE------------IASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELE 1064 (1857)
Q Consensus 1009 ~~~~~~~~~la~~------------~~~~~~~~~~l~e~~ee~q~~~r~~~~~~~e~~q~r~k~ye~~ 1064 (1857)
+++.+|+..|... +-...+-.+.||.-.++--++.-+|+.+.+++.+|...+|-.+
T Consensus 872 ~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e 939 (1822)
T KOG4674|consen 872 IKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE 939 (1822)
T ss_pred HHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333222 2223344556776666666888999999999999988844444
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.93 E-value=1.8e-18 Score=227.42 Aligned_cols=502 Identities=23% Similarity=0.293 Sum_probs=236.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHH--------HHHHHHHHH
Q psy10988 88 FELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID----------DEKSVS--------YQLEEKAIE 149 (1857)
Q Consensus 88 ~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~----------kEKeLs--------keLnEl~~e 149 (1857)
|+=.-.+..|...+......+......+..+..-+.+++.++..++. +...+. ..+..+..+
T Consensus 161 iEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~ 240 (1163)
T COG1196 161 IEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKE 240 (1163)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566777777777777777777666666666666666666655 222222 555566666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy10988 150 ISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDA 227 (1857)
Q Consensus 150 Ir~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~ 227 (1857)
+..+......+...+..+..+......+|.. ...++. +..+......+-.++..+..++..+..++.++
T Consensus 241 l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~-------- 311 (1163)
T COG1196 241 LEELEEELSRLEEELEELQEELEEAEKEIEE-LKSELEELREELEELQEELLELKEEIEELEGEISLLRERL-------- 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 6666666666666666666666666666666 555555 33333334444444444445555554444444
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH-----------HHHHHHHHHHHHHHH
Q psy10988 228 WGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKL-----------EQDAMVKELKSKVET 296 (1857)
Q Consensus 228 ~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~-----------~leaELqeLekeveE 296 (1857)
......+.........+...+......+.........+......+..-.. ...+....+..++..
T Consensus 312 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1163)
T COG1196 312 ----EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387 (1163)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333321111111111111111111 111112222222333
Q ss_pred HHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy10988 297 LEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDS 376 (1857)
Q Consensus 297 lE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~ 376 (1857)
+...+.....++..+...+. .++.++..+...++.+...+..+...+..+..+...+..++..++..++.+.. .
T Consensus 388 ~~~~~~~~~~~l~~l~~~i~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 461 (1163)
T COG1196 388 LEAELAEIRNELEELKREIE----SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD--R 461 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--H
Confidence 33322223333333333333 22333333333333333333333333322222222222222222222222222 2
Q ss_pred cc-------cchhHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchh
Q psy10988 377 WG-------GDNDKLATLQQENKVLNEKVSELQTQLL---SVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEF 446 (1857)
Q Consensus 377 L~-------~~~rKL~akq~E~kvLks~Ie~LEgf~~---svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eE 446 (1857)
+. .....+..+..+.+.+...+..++.... +++.... |- ..+ ..|+.|.|++++. |++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~--------~~-~~~-~~Gv~G~v~~li~-v~~~ 530 (1163)
T COG1196 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE--------AL-ESG-LPGVYGPVAELIK-VKEK 530 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--------HH-hcc-CCCccchHHHhcC-cChH
Confidence 22 2222333333333333333333322221 1222222 00 223 7788899999999 9999
Q ss_pred HHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchhhhhhhhHhhhhhhhHH---HHH--HHHHHHH
Q psy10988 447 EKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLREESGLLRQKLSEQKVI---ISK--LKTQLEA 518 (1857)
Q Consensus 447 y~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~ 518 (1857)
|.+||+. +||.-++++||++...+. .||+.+..|+++|+||+.++.-...--.- ..+++ +.. .-..++.
T Consensus 531 y~~Aie~-alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~--~~g~~~~a~dli~~d~~~~~ 607 (1163)
T COG1196 531 YETALEA-ALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA--APGFLGLASDLIDFDPKYEP 607 (1163)
T ss_pred HHHHHHH-HcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc--ccchhHHHHHHhcCCHHHHH
Confidence 9999999 999999999999977766 99999999999999999988433211110 22222 111 1123444
Q ss_pred HhccCCCCCCCcchhhhhhhhhHHHhhhccchhhhhH-hhhceeeeccccccCCCCCcc-cchhhhhhhhhhhccHHHHH
Q psy10988 519 AQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRV-EQLGLVIENNYVQESDPMNNS-LDNTAQLTAEKERLDEEVTV 596 (1857)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 596 (1857)
|-...-.|...|+.-.+.+ |+ ...-.. +.|+ ---|- ||-.+..|... ....+.+... . +...
T Consensus 608 ~~~~~l~~t~Iv~~l~~A~--~l--~~~~~~--~~riVTl~G~-----~~~~~G~~tGG~~~~~~~~~~~---~--~l~~ 671 (1163)
T COG1196 608 AVRFVLGDTLVVDDLEQAR--RL--ARKLRI--KYRIVTLDGD-----LVEPSGSITGGSRNKRSSLAQK---R--ELKE 671 (1163)
T ss_pred HHHHHhCCeEEecCHHHHH--HH--HHhcCC--CceEEecCCc-----EEeCCeeeecCCccccchhhHH---H--HHHH
Confidence 4444455555555333222 11 111111 1121 11232 33333333333 1111111111 1 2334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh
Q psy10988 597 LSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES 638 (1857)
Q Consensus 597 ~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~ 638 (1857)
+..++..+...+.......+.+...+.++.....++..++..
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE 713 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666666666666666655555
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.93 E-value=1.6e-18 Score=223.57 Aligned_cols=387 Identities=21% Similarity=0.298 Sum_probs=180.6
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHH--------HHHHHHHHHHHHH
Q psy10988 85 RNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID---DEKSVS--------YQLEEKAIEISQL 153 (1857)
Q Consensus 85 ~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~---kEKeLs--------keLnEl~~eIr~l 153 (1857)
+.=|+-+.++..|..++......+..+.+.+.++..++..|+.+...++. .-..+. ..+..+...+..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~ 237 (1179)
T TIGR02168 158 RAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEEL 237 (1179)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667788999999999999999999999999999999888888776 111111 2222333444444
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCc
Q psy10988 154 TEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGAS 231 (1857)
Q Consensus 154 Enekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~ 231 (1857)
...+..+...+..+......+..++.. ....+. ...+......+..+...+..+...+.....++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~------------ 304 (1179)
T TIGR02168 238 REELEELQEELKEAEEELEELTAELQE-LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------------ 304 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------
Confidence 444444444444444444444444443 333333 22233333333333333333333333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
...+..+..+..+...+...+..+..++..+...+......+..+..........+..+...+..+...+...+..+..+
T Consensus 305 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 384 (1179)
T TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333222222222222222222222222
Q ss_pred hhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10988 312 TDNDNWGSSGNEQDIEALKKENEEIKEKLAKQEST-------------------LAKLKTHSESLQKQLLEKEMELEEWG 372 (1857)
Q Consensus 312 qqe~E~~~~eleeqLeeLEkEIEELeeeLEelerK-------------------LEeLQnE~EeLKsqLeele~EIeel~ 372 (1857)
..... .++.++..+...+..+...+..+... +..+...+..+..++..+...+..+.
T Consensus 385 ~~~~~----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 460 (1179)
T TIGR02168 385 RSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460 (1179)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 11222222211111111111111111 12222222333333333333333333
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccc---cccc-CCCCCCCCcCccchhHhhhhhcchhHH
Q psy10988 373 NNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKEN---DLED-WGEGDDWGTGNSTELNNLRAKCSEFEK 448 (1857)
Q Consensus 373 e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~k~~~~---~~~~-~~~~~~W~kg~~~lLsDli~~v~eEy~ 448 (1857)
. .+......+..++.++..++..+..+.....++..+...... -+.+ |....+| .|+.|.+.+++. |++.|.
T Consensus 461 ~--~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v~~~~-~~~~g~~~~li~-~~~~~~ 536 (1179)
T TIGR02168 461 E--ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL-SGILGVLSELIS-VDEGYE 536 (1179)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhccccc-CCCccchhceee-eChhHH
Confidence 3 333333333333344334443333322111111110100000 0000 1112223 456678899999 999999
Q ss_pred HHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchhh
Q psy10988 449 TIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLRE 493 (1857)
Q Consensus 449 ~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~~ 493 (1857)
.|++. .+|..+.++||++.+.+. .++..+..|.++|+|++.++.
T Consensus 537 ~a~~~-~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~ 583 (1179)
T TIGR02168 537 AAIEA-ALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKG 583 (1179)
T ss_pred HHHHH-HHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeecccccc
Confidence 99999 999999999999998755 788888899999999988764
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.86 E-value=1e-14 Score=189.43 Aligned_cols=41 Identities=5% Similarity=-0.083 Sum_probs=33.2
Q ss_pred cCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhh
Q psy10988 430 TGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWG 475 (1857)
Q Consensus 430 kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L 475 (1857)
.|+.+.+.|++. |+++|..++.. +|| +.+||++.+.|..+.
T Consensus 596 ~~~~~~~~~~i~-~~~~~~~~~~~-~lg---~~~v~~~l~~a~~~~ 636 (1164)
T TIGR02169 596 DGVIGFAVDLVE-FDPKYEPAFKY-VFG---DTLVVEDIEAARRLM 636 (1164)
T ss_pred CCchHHHHHHcc-CcHHHHHHHHH-HCC---CeEEEcCHHHHHHHh
Confidence 344456779999 99999999999 766 457999999999655
No 10
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.83 E-value=6e-22 Score=252.74 Aligned_cols=740 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH--hHHHHHHHHHHhhh
Q psy10988 586 EKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK--TLRNEIQELHAKLI 662 (1857)
Q Consensus 586 ~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~--~l~~~i~el~~rl~ 662 (1857)
-+..|..-+.....++..+..+++.....+-.|..++.-|.-....|.++|.+ ....+-++-- +|...+-+|.++|+
T Consensus 5 ~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Le 84 (859)
T PF01576_consen 5 QKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLE 84 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888888888888888888888888888888888888988 5444444322 99999999999999
Q ss_pred hHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhhhHHHHHHHHhhhhhhhhhh----hhh
Q psy10988 663 NVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDEKNTLDNIK----VEK 738 (1857)
Q Consensus 663 ~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~~~e~i~kl~kEkk~l~e~~----~~~ 738 (1857)
+...-......-.+|-+.++..|++++++.-.-.+.....=+.-. -..+.++.++|.-+.+.|..++-.| .+.
T Consensus 85 e~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh---~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~ 161 (859)
T PF01576_consen 85 EAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKH---QDAVAELNEQLEQLQKQKAKLEKEKSQLEAEL 161 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888877777777889999999999999875543322100000000 0111224444444444444433321 112
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHhHHH--Hh
Q psy10988 739 ENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDE--KL 816 (1857)
Q Consensus 739 ~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~l~e--~l 816 (1857)
..+...++.++. .|++. -+..-.+|.++.++...+..-.+.++|+...+.+|+.++..+...+.|.+..+.. +.
T Consensus 162 ~dL~~~l~~~~k---~k~~~-Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~ 237 (859)
T PF01576_consen 162 DDLQAQLDSLQK---AKQEA-EKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQRE 237 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH---HHHHH-HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333332 23322 3344556777777777777778888888888888888888888888777776222 22
Q ss_pred hhhhhhhhh-hhhchHH-------HHHhHHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchh-----hHHHHHH
Q psy10988 817 KEFNEKEIS-YNENIEA-------SNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDN-----IVIENQQ 883 (1857)
Q Consensus 817 kk~~e~e~~-~~~~~e~-------~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~n-----re~e~~k 883 (1857)
+...+..+. +...+++ |+++++.+..+++.|.+.|++-.++-.-+ +.-+..++.++. -+.++..
T Consensus 238 k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l---~~qlsk~~~El~~~k~K~e~e~~~ 314 (859)
T PF01576_consen 238 KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSEL---ERQLSKLNAELEQWKKKYEEEAEQ 314 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHhhHHHHHHHHHHHHhhh
Confidence 222244444 4444444 66777788889999999988655444311 111222333332 2222222
Q ss_pred HHHhHHHhh-------hhhhHHHHHHHHHHHHh---hHHHHHhhhHHHHHH-----------HHhHhHHHHHHHHHhhHH
Q psy10988 884 LKQNLESVK-------QENTLVVENLQNLIAQK---DYEINAKVTELSIIM-----------EKCKQYEDKCIELESTLD 942 (1857)
Q Consensus 884 lrr~lEe~~-------~e~~~~~~~lq~~k~~~---k~~~~~e~~dl~~~~-----------~~~k~~E~~~~e~~~k~~ 942 (1857)
.--.||+++ .++..+++.++...+++ +.-+..+++|+...| ++-+.|+.++.+++.+++
T Consensus 315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~ 394 (859)
T PF01576_consen 315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222333333 26667777777666666 667888889888777 777889999999999998
Q ss_pred h---hhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHH
Q psy10988 943 A---KLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLA 1019 (1857)
Q Consensus 943 ~---~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la 1019 (1857)
. .+..+......+.+++..|...+++... .+..+.+....|...+.++..++.+..+... .|-
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e---~~e~lere~k~L~~El~dl~~q~~~~~k~v~-----------eLe 460 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQE---QLEELERENKQLQDELEDLTSQLDDAGKSVH-----------ELE 460 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHhhccchhhhhhhccchH-----------HHH
Confidence 7 5666666777778888888888888888 7888888888888888888888777777666 444
Q ss_pred HHHHhhhhhhHHHHHHHHHHH----HHHHhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHh
Q psy10988 1020 EEIASKTSIIQTLEIQVKELQ----DKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQ 1094 (1857)
Q Consensus 1020 ~~~~~~~~~~~~l~e~~ee~q----~~~r~~~~~~~e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~ 1094 (1857)
...+.+...++.++.+++|.. ........+..++.+.|.. |+-+--.+-++ +++.++. ...|..++..
T Consensus 461 k~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e-~er~l~eKeeE------~E~~Rr~~qr~l~~le~~ 533 (859)
T PF01576_consen 461 KAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE-IERELQEKEEE------FEETRRNHQRQLESLEAE 533 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhH------HHHHHHhhHHHHHHHHhH
Confidence 466677777778888888777 3334556688899999998 77654445556 8888888 8889888877
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHHhhhHHHHH---HhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhH
Q psy10988 1095 LDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQEESI---ASNFLKNELQSLQDAFSVMKSDNASLLLEKNTL 1171 (1857)
Q Consensus 1095 ~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i---~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~ 1171 (1857)
|+.--- .-..+-+.|.+|.++|.|+.+ .+|-....+.|--+.+-..+.+ -...+
T Consensus 534 LE~E~k-----------------~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkd------lq~~l 590 (859)
T PF01576_consen 534 LEEERK-----------------ERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKD------LQREL 590 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH------Hhhhh
Confidence 653211 112566889999999999998 7777777777777777777777 66778
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCcchhhhhhhhhhhhhhhHHHHHhhH
Q psy10988 1172 METKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSE 1251 (1857)
Q Consensus 1172 ~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le~~l~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~~El~k~~~ 1251 (1857)
++.+...+.+...++..+..+-.|+..++++...++ .+-|--+.+. .+..++. +.|.+.....+-+...++
T Consensus 591 ee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~-~a~r~rk~aE----~el~e~~----~~~~~l~~~~~~l~~~kr 661 (859)
T PF01576_consen 591 EEAQRAREELREQLAVSERRLRALQAELEELREALE-QAERARKQAE----SELDELQ----ERLNELTSQNSSLSEEKR 661 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHH----HHHHHHHhhhhhhHHHHH
Confidence 888888888888888888888899999999999998 7788888888 8999988 777777777778888999
Q ss_pred hHHHHHHHHHHHHHH-------hhhhhhhHHHHHHhhhhHHHHHHHHHHH--HHHHHHhhhhhccccCCCCCccccchhH
Q psy10988 1252 AKDKTLQEMQAALEK-------HLSEKYQFEKEALELRTEDLEYKLQEKE--KMIQELNEMKQSFFIGDSKDSVRYSDEE 1322 (1857)
Q Consensus 1252 ~~e~e~~elq~ale~-------~e~~~~r~~~e~~q~~~~~~~~~l~eke--e~~e~~r~~~~~~~~~~~~~~~~~~~~~ 1322 (1857)
.++.++..|+..|+. ...+.-++...+.++.. ++ -++.+ ..++..| .+
T Consensus 662 ~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~-eL---~~Eq~~~~~le~~k-------------------~~ 718 (859)
T PF01576_consen 662 KLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAE-EL---RQEQDHNQHLEKEK-------------------KA 718 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-HH---HHHHHHHHHHHHHH-------------------HH
Confidence 999999999998882 22222333333444433 22 11110 1111222 33
Q ss_pred HHHHHhHHHHHHHHHHH-HHhhhhhhHhhhhhhHhHHhhhhHHHhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 1323 HVQELRELQLMNESLQN-EVLRSATEIDNMKETITYLEQYNLQLSKSQESSTTL-TLLQSELAEQRTLNQQLVQIVNTKH 1400 (1857)
Q Consensus 1323 h~~~l~~~~~mq~~L~~-E~~~~~~e~~~~k~~~~~le~~~~~le~~l~~a~~~-~e~q~~~~~~k~l~~~lv~~v~~KH 1400 (1857)
+-+++ ..|+.-|+. |..+ . ...|+.|.+||..|-+|+..|+.-.+- ++++ +++
T Consensus 719 LE~q~---keLq~rl~e~E~~~-~---~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~------k~~------------ 773 (859)
T PF01576_consen 719 LERQV---KELQARLEEAEQSA-L---KGGKKQIAKLEARIRELEEELESEQRRRAEAQ------KQL------------ 773 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH---HHHHHHHHHHHHhh-h---cccccHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHH------------
Confidence 44455 444444432 1111 1 144667778888888888888887777 7766 666
Q ss_pred ccccchHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHhh
Q psy10988 1401 TESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLK 1439 (1857)
Q Consensus 1401 ~Es~~Yh~eIqrLq~~L~ee~~~~eeL~eq~~~le~rl~ 1439 (1857)
+++---|++++.++++..+....+..++..+..++.
T Consensus 774 ---rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k 809 (859)
T PF01576_consen 774 ---RKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLK 809 (859)
T ss_dssp ---------------------------------------
T ss_pred ---HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888887777777777766655554
No 11
>KOG0996|consensus
Probab=99.82 E-value=1.8e-14 Score=181.83 Aligned_cols=560 Identities=22% Similarity=0.279 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHH--------HHHHHHHHHHHHHHHhh
Q psy10988 96 DYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID----------DEKSVS--------YQLEEKAIEISQLTEHN 157 (1857)
Q Consensus 96 ~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~----------kEKeLs--------keLnEl~~eIr~lEnek 157 (1857)
+|...+..+..++..+.+...+....+.--+.....+.. ++.++- ..+.+...+|-......
T Consensus 264 ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~ 343 (1293)
T KOG0996|consen 264 RYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEEL 343 (1293)
T ss_pred ccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777776666655554433333222222 222222 55666666777776666
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhH--------------HHHHHhh---------HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 158 RFLQEEMQSLKDKLRDLDENVTV--------------EDIKKAN---------ESAIAKKDEVIEKLKAELESVEKALRE 214 (1857)
Q Consensus 158 k~lqErL~~LedK~~~L~eEIe~--------------~de~Kln---------~eql~~~ee~iEelk~ELEelEkeleE 214 (1857)
....+.+.....+..-...+.-. +..++.. ..+-.+.++.+..+...+..++++++.
T Consensus 344 ~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek 423 (1293)
T KOG0996|consen 344 EKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEK 423 (1293)
T ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555544422111111 0111111 111122233334444455555555555
Q ss_pred HHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhhhHHHHHHHHHH
Q psy10988 215 KESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKL----EADLTRVKEEKEAEVSGKLEQDAMVKEL 290 (1857)
Q Consensus 215 iree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L----~~ql~~lkqElE~l~sdk~~leaELqeL 290 (1857)
.+... .+.....+..+-++..++..+-+++...... +..+..++++.+.+...+..++.++..+
T Consensus 424 ~~~~~------------~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 424 ARRKK------------SELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHhhH------------HHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 55555 4444455555555555555555544444333 3344455666667777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 291 KSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEE 370 (1857)
Q Consensus 291 ekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIee 370 (1857)
...+.+..+.+...+.++..|....+ .....+..+.+.+......+.+....++++...+..++.++.....++..
T Consensus 492 ~~~~n~~~~e~~vaesel~~L~~~~~----~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 492 LKQVNEARSELDVAESELDILLSRHE----TGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHH
Confidence 88888888888888888888888888 77778888888888888888888888888888888888888888888888
Q ss_pred hccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchhHHHH
Q psy10988 371 WGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTI 450 (1857)
Q Consensus 371 l~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eEy~~A 450 (1857)
++. ........+..++.+...+++-...-..-.....++.+-+ ..|..+|+-|.|.|+.. +|+-|-+|
T Consensus 568 ~~~--e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~k---------esG~i~Gf~GRLGDLg~-Id~kYDvA 635 (1293)
T KOG0996|consen 568 LRK--EERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLK---------ESGRIPGFYGRLGDLGA-IDEKYDVA 635 (1293)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH---------HcCCCCccccccccccc-cchHHHHH
Confidence 877 6676777777777776666665544333333444444322 46788999999999999 99999999
Q ss_pred HHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchhhhhhhhHhh-hhh--------hhHHHHHHHHHHHH
Q psy10988 451 VELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLREESGLLRQK-LSE--------QKVIISKLKTQLEA 518 (1857)
Q Consensus 451 VE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~ 518 (1857)
|-. ..+-|+|+|||+.++|. .||..+..|+++|++||.+..----+-.- -.+ -+|-=.+++.-.-.
T Consensus 636 IsT--ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYf 713 (1293)
T KOG0996|consen 636 IST--ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYF 713 (1293)
T ss_pred HHH--hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHH
Confidence 999 77888999999999988 99999999999999999887211000000 000 00000112222222
Q ss_pred HhccCCCCCCCcchhhhhhhhhHHHhhhccchhhhhHhhh-ceeeecc--------ccccCCCCCcccchhhhhhhhhhh
Q psy10988 519 AQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQL-GLVIENN--------YVQESDPMNNSLDNTAQLTAEKER 589 (1857)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1857)
|-..|- |-... +--.||.. -..+ |-||--| |-.|+-. -|-. ..|+++..-|+--.+.-+.
T Consensus 714 aLrdtL-----V~d~L-eQAtRiay---gk~r-r~RVvTL~G~lIe~SGtmtGGG~~v~~-g~mg~~~~~t~~s~~~v~~ 782 (1293)
T KOG0996|consen 714 ALRDTL-----VADNL-EQATRIAY---GKDR-RWRVVTLDGSLIEKSGTMTGGGKKVKG-GRMGTSIRVTGVSKESVEK 782 (1293)
T ss_pred HHhhhh-----hhcCH-HHHHHHhh---cCCC-ceEEEEecceeecccccccCCCCcCCC-CCCCCccccCCCCHHHHHH
Confidence 211110 00000 01112211 1111 1222221 3333321 1111 1466666544444556667
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHhhH
Q psy10988 590 LDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVN 669 (1857)
Q Consensus 590 ~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~ 669 (1857)
++..+..+...+....+.+...+..+..|...+..|.-....+..-+++ ++. ..-.|+.+|.++++. +.
T Consensus 783 le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~---~~~-~~~~l~~~i~~~E~~-------~~ 851 (1293)
T KOG0996|consen 783 LERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKR---LAE-LIEYLESQIAELEAA-------VL 851 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHH-------hh
Confidence 7778888888888888888777778888888887777766666666665 322 333666666666554 33
Q ss_pred HHHHHHHh---hhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhh
Q psy10988 670 QAQVEKQA---LDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQS 716 (1857)
Q Consensus 670 ~l~~~k~k---le~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~ 716 (1857)
-..+.++. ++..+++|++.++++- ++.+...+|+.||.
T Consensus 852 k~~~d~~~l~~~~~~ie~l~kE~e~~q---------e~~~Kk~~i~~lq~ 892 (1293)
T KOG0996|consen 852 KKVVDKKRLKELEEQIEELKKEVEELQ---------EKAAKKARIKELQN 892 (1293)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHH
Confidence 33333322 3345667777777663 22222455777766
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.80 E-value=8.4e-13 Score=174.64 Aligned_cols=385 Identities=18% Similarity=0.255 Sum_probs=218.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy10988 94 VEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID----DEKSV---SYQLEEKAIEISQLTEHNRFLQEEMQS 166 (1857)
Q Consensus 94 ~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~----kEKeL---skeLnEl~~eIr~lEnekk~lqErL~~ 166 (1857)
|..++.++..+.+.+..+...+..+...+...+..+..++. +...+ +..+..+...|..++.++..+..++.+
T Consensus 234 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 313 (1163)
T COG1196 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555 22222 356666666788888888888888888
Q ss_pred HHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHH
Q psy10988 167 LKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVE 244 (1857)
Q Consensus 167 LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE 244 (1857)
+......+...+.. ++.++. ...+.........+...+..+.....+..... + .........+..++.+
T Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~------~--~~~~~~~~~~~~~~~~ 384 (1163)
T COG1196 314 LENELEELEERLEE-LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL------S--ALLEELEELFEALREE 384 (1163)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------H--HHhhhHHHHHHHHHHH
Confidence 88887777777777 666666 44444443333334444444444444444333 0 1123455566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHH
Q psy10988 245 KQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQ 324 (1857)
Q Consensus 245 ~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~elee 324 (1857)
+..+...+..+.+++..+..+++.++.++.++......+..++..+..++..+...++..+..+..+....+ .+..
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 460 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE----ELRD 460 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhccCCCcccchhHHHHH---HHHHHHH-HHHH
Q psy10988 325 DIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKE--MELEEWGNNDSWGGDNDKLATL---QQENKVL-NEKV 398 (1857)
Q Consensus 325 qLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele--~EIeel~e~~~L~~~~rKL~ak---q~E~kvL-ks~I 398 (1857)
.+..++..+..+...+......+......+..+........ ..+-.+... .+.+.--.+..+ ...|... .--+
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~Gv~G~v~~li~v~~~y~~Aie~al 539 (1163)
T COG1196 461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES-GLPGVYGPVAELIKVKEKYETALEAAL 539 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc-cCCCccchHHHhcCcChHHHHHHHHHc
Confidence 77777777777777777777777766666666655443300 000000000 011111111111 0011110 0000
Q ss_pred ---------HHHHhhHHHHHHHHhhcc--------cccccCCCCCCC-CcCccchhHhhhhhcchhHHHHHHHhhHHHHh
Q psy10988 399 ---------SELQTQLLSVEEALKKKE--------NDLEDWGEGDDW-GTGNSTELNNLRAKCSEFEKTIVELKSQEELL 460 (1857)
Q Consensus 399 ---------e~LEgf~~svk~l~k~~~--------~~~~~~~~~~~W-~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L 460 (1857)
++...-..++.|+.+..- +.+.+.....+- ..|+++.++|++. |||.|+.||.. +|+
T Consensus 540 G~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~-~d~~~~~~~~~-~l~--- 614 (1163)
T COG1196 540 GNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLID-FDPKYEPAVRF-VLG--- 614 (1163)
T ss_pred ccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhc-CCHHHHHHHHH-HhC---
Confidence 000111113334433110 000000000000 4666778899999 99999999999 654
Q ss_pred chheecCchHHhHhhhccCCCCcccccCcc-hhhhhhhh
Q psy10988 461 KQALIDKENELSEWGQTNEWGSPSSSDLNT-LREESGLL 498 (1857)
Q Consensus 461 ~~~VVd~~dea~e~L~~nekGra~ff~Ld~-~~~~~~~~ 498 (1857)
+.+||++.+.|..+...... ++.+..|++ +-+-+|.+
T Consensus 615 ~t~Iv~~l~~A~~l~~~~~~-~~riVTl~G~~~~~~G~~ 652 (1163)
T COG1196 615 DTLVVDDLEQARRLARKLRI-KYRIVTLDGDLVEPSGSI 652 (1163)
T ss_pred CeEEecCHHHHHHHHHhcCC-CceEEecCCcEEeCCeee
Confidence 67999999999955444311 234455665 55555544
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.78 E-value=9.8e-12 Score=161.34 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=19.9
Q ss_pred chhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhh
Q psy10988 434 TELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWG 475 (1857)
Q Consensus 434 ~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L 475 (1857)
..+.|++. |++.+..++.. . +....||.+.+.+..++
T Consensus 602 ~~~~dl~~-~~~~~~~~~~~-~---~~~~~ivt~l~~a~~~~ 638 (1179)
T TIGR02168 602 GVAKDLVK-FDPKLRKALSY-L---LGGVLVVDDLDNALELA 638 (1179)
T ss_pred HHHHHHhc-ccHhHHHHHHH-H---hCCceEeCCHHHHHHHH
Confidence 34445555 55666555544 2 22346777777766444
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=4e-10 Score=151.21 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH-hHHHHHHHHHHhhhhHH
Q psy10988 590 LDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK-TLRNEIQELHAKLINVE 665 (1857)
Q Consensus 590 ~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~-~l~~~i~el~~rl~~~E 665 (1857)
+...+..+..++..+.++..........++-++..+..+.+.+..+|++ ...|.++.+. +.+..|.++.+.+....
T Consensus 575 l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777788888888888888888888888 6666654333 45556666666555554
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=1.1e-07 Score=128.16 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=78.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhh
Q psy10988 741 LEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFN 820 (1857)
Q Consensus 741 ~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~ 820 (1857)
....|.++..+...++.++..-...++..+.+++..++.-.+.+.++.+.+.+++.+...-.+.+..+..-+.+--.+.
T Consensus 299 s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~- 377 (1311)
T TIGR00606 299 TDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRL- 377 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3444566666677888888888888999999999999999999999999999999888888888877666655433333
Q ss_pred hhhhh-hhh------chHH----HHHhHHHhHHHHHHHHHHHHHhhc
Q psy10988 821 EKEIS-YNE------NIEA----SNHKIQQLTQETDTLKAELVAQAE 856 (1857)
Q Consensus 821 e~e~~-~~~------~~e~----~qkkikdL~~Ele~l~~~L~e~~~ 856 (1857)
. |+ +.. .+.+ +.+.+.+..++++.+...+...-.
T Consensus 378 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 422 (1311)
T TIGR00606 378 E--LDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKER 422 (1311)
T ss_pred C--cCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 211 1322 555566777777776666555433
No 16
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.64 E-value=5.5e-09 Score=140.60 Aligned_cols=459 Identities=14% Similarity=0.140 Sum_probs=259.4
Q ss_pred cccccccccccccccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHH-
Q psy10988 78 VPTTSTVRNGFELMPN--------VEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID----------DEKS- 138 (1857)
Q Consensus 78 ~~~~~~~~~~~~~~~~--------~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~----------kEKe- 138 (1857)
-|+|++|-..|---|+ .-+++.++.....++.....++..+...+.+++..+..++. ....
T Consensus 264 ~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~ 343 (1486)
T PRK04863 264 TESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTA 343 (1486)
T ss_pred hhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666633232 12344455555555555555555555555555554444444 1111
Q ss_pred H--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 139 V--SYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALRE 214 (1857)
Q Consensus 139 L--skeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleE 214 (1857)
+ ...+..+...+..+..........+..+......+..++.. ....+. +..+......+..+..++..++..+..
T Consensus 344 lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeElee-lEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~ 422 (1486)
T PRK04863 344 LRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEA-AEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQA 422 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13344444444444444444445555555555555555554 444444 555666666677777777777766665
Q ss_pred HHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH-----------
Q psy10988 215 KESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQ----------- 283 (1857)
Q Consensus 215 iree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~l----------- 283 (1857)
...-. .|-..++... +.++..+..+...+.++...+..++.++..+...+..+.+.+..+....-.-
T Consensus 423 Le~~~-~~~~~~~~Sd-EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~ 500 (1486)
T PRK04863 423 LERAK-QLCGLPDLTA-DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARE 500 (1486)
T ss_pred HHHHH-HHhCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 55554 6655555443 5688889999999999999999999999999999988888877754433221
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhccccCC---CCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 284 -----------DAMVKELKSKVETLEASLKQKEQE---LEGWTDNDNWGS---SGNEQDIEALKKENEEIKEKLAKQEST 346 (1857)
Q Consensus 284 -----------eaELqeLekeveElE~~LEe~~ee---lE~Lqqe~E~~~---~eleeqLeeLEkEIEELeeeLEelerK 346 (1857)
-..+..+...+.+++..+..++.- +..+.+...... ..+..-....+..++.+...+.+....
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1486)
T PRK04863 501 LLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER 580 (1486)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112556666666666655444332 222222111000 133344444555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC--------Ccc---------------------cchhHHHHHHHHHHHHHHH
Q psy10988 347 LAKLKTHSESLQKQLLEKEMELEEWGNND--------SWG---------------------GDNDKLATLQQENKVLNEK 397 (1857)
Q Consensus 347 LEeLQnE~EeLKsqLeele~EIeel~e~~--------~L~---------------------~~~rKL~akq~E~kvLks~ 397 (1857)
...++...+.|..+|..+...--.|...+ +-+ .....-+..++.+..|+..
T Consensus 581 ~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~ 660 (1486)
T PRK04863 581 RMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEE 660 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665554433333200 000 0111122233334444444
Q ss_pred HHHHHhhHHHHHHHHhhcccccccCCCCC-CCCcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---H
Q psy10988 398 VSELQTQLLSVEEALKKKENDLEDWGEGD-DWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---E 473 (1857)
Q Consensus 398 Ie~LEgf~~svk~l~k~~~~~~~~~~~~~-~W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e 473 (1857)
|+++-....|.+..+. +. .-+.|.. |+++|+-|+++|..++++ +|++.++++||++.+.|. .
T Consensus 661 i~~l~~~~~g~~~~l~-----------~~~~~~~Gvl--vsel~~~v~~~~~~~~~A-~lg~~~~~iVv~d~~~A~~ai~ 726 (1486)
T PRK04863 661 IERLSQPGGSEDPRLN-----------ALAERFGGVL--LSEIYDDVSLEDAPYFSA-LYGPARHAIVVPDLSDAAEQLA 726 (1486)
T ss_pred HHhhhccCCCccHHHH-----------HHHHhcCCee--hhHhhhccCcchHHHHHH-HHHhhhCeEEeCCHHHHHHHHH
Confidence 4444333334444443 21 2344553 899998899999999999 999999999999999988 7
Q ss_pred hhhccCCCCcccccCcchhhhhhhhHhhhhhhhHHHHHHHHHHHHHhccCCCCCCCcchhhhhhhhhHHHhhhccchhhh
Q psy10988 474 WGQTNEWGSPSSSDLNTLREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRT 553 (1857)
Q Consensus 474 ~L~~nekGra~ff~Ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1857)
||.. -++++.++-.|.-.=.+|.+-.-.-+..|.+.--..++ --.-..++||-.- -.||.||+-|..+-+++-.
T Consensus 727 ~L~~-~p~d~~li~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----r~s~~p~~p~~gr-~are~~~~~l~~~~~~~~~ 800 (1486)
T PRK04863 727 GLED-CPEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQW----RYSRFPEVPLFGR-AAREKRIEQLRAEREELAE 800 (1486)
T ss_pred hccC-CccceeeecCChhHHhccCccHHHhcCCeeeeecchhh----hhccCCCcccccH-HHHHHHHHHHHHHHHHHHH
Confidence 8877 56666666555444444544444444444332222222 1122346777543 4689999999999998877
Q ss_pred hHhhhc
Q psy10988 554 RVEQLG 559 (1857)
Q Consensus 554 ~~~~~~ 559 (1857)
+...+.
T Consensus 801 ~~~~~~ 806 (1486)
T PRK04863 801 RYATLS 806 (1486)
T ss_pred HHHHHh
Confidence 554443
No 17
>KOG0964|consensus
Probab=99.59 E-value=3.3e-08 Score=124.71 Aligned_cols=89 Identities=22% Similarity=0.187 Sum_probs=65.1
Q ss_pred CcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchhhhhhhhHhhhhhh
Q psy10988 429 GTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLREESGLLRQKLSEQ 505 (1857)
Q Consensus 429 ~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~~~~~~~~~~~~~~ 505 (1857)
-.|+-|.|.++|. ||+.|.+|||. .-|--|=|+||++.+-+- .-+..-..|+++|+|||.|+- +..---+-|.-
T Consensus 521 ~ngv~G~v~eL~~-v~~~f~tavEv-taGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~-r~v~yp~~sda 597 (1200)
T KOG0964|consen 521 PNGVFGTVYELIK-VPNKFKTAVEV-TAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA-RDVEYPKDSDA 597 (1200)
T ss_pred ccccceehhhhhc-CCHHHHhHHhh-hcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch-hhccCCCCCCc
Confidence 3566688999999 99999999999 888888999999988876 444555559999999998875 22222233444
Q ss_pred hHHHHHHH--HHHHHHh
Q psy10988 506 KVIISKLK--TQLEAAQ 520 (1857)
Q Consensus 506 ~~~~~~~~--~~~~~~~ 520 (1857)
--.|++|+ .+.++|-
T Consensus 598 iPli~kl~y~p~fdka~ 614 (1200)
T KOG0964|consen 598 IPLISKLRYEPQFDKAL 614 (1200)
T ss_pred cchHHHhCcchhhHHHH
Confidence 45666665 3455543
No 18
>KOG0018|consensus
Probab=99.56 E-value=2.4e-08 Score=127.39 Aligned_cols=537 Identities=19% Similarity=0.270 Sum_probs=253.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh--hHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10988 85 RNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQ--QKID--DEKSVSYQLEEKAIEISQLTEHNRFL 160 (1857)
Q Consensus 85 ~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLq--elK~--kEKeLskeLnEl~~eIr~lEnekk~l 160 (1857)
-+..++-|-|+.+..+.....+.....-.++..|..+.-.-....+ +... +++..+.+..-+.=++-..+..+.-.
T Consensus 153 SgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~ 232 (1141)
T KOG0018|consen 153 SGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKA 232 (1141)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Confidence 4456778889999999999999998888888888887733322221 1111 22222233333333444555555555
Q ss_pred HHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHH
Q psy10988 161 QEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEK 240 (1857)
Q Consensus 161 qErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~ 240 (1857)
..++..++....++....+. ....+. .-.+.......++..+...+.++.+.+ .+
T Consensus 233 ~~els~~~~ei~~~~~~~d~-~e~ei~-----~~k~e~~ki~re~~~~Dk~i~~ke~~l------------~e------- 287 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDK-KEREIR-----VRKKERGKIRRELQKVDKKISEKEEKL------------AE------- 287 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhH-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH------------hh-------
Confidence 55555555555555555555 222222 111222233344444444444444444 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy10988 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQ-------------- 306 (1857)
Q Consensus 241 lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~e-------------- 306 (1857)
+-++....+......+++...+..+...+..+......+.+++.++..+.......++.++...+
T Consensus 288 -rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ 366 (1141)
T KOG0018|consen 288 -RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVE 366 (1141)
T ss_pred -hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHH
Confidence 22222222333333333333333333333333333333333333333333333333333333333
Q ss_pred HhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhc
Q psy10988 307 ELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQL--------------LEKEMELEEWG 372 (1857)
Q Consensus 307 elE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqL--------------eele~EIeel~ 372 (1857)
+++.|...-. ....++|..++.........++...++..++.++.+.+..++ ..+.....++.
T Consensus 367 ey~rlk~ea~---~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~ 443 (1141)
T KOG0018|consen 367 EYERLKEEAC---KEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELK 443 (1141)
T ss_pred HHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111100 011333334444333333333333333333333333333333 33333333333
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHH----------------HHHHHHhhcccccccCCCCCCCCcCccchh
Q psy10988 373 NNDSWGGDNDKLATLQQENKVLNEKVSELQTQLL----------------SVEEALKKKENDLEDWGEGDDWGTGNSTEL 436 (1857)
Q Consensus 373 e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~----------------svk~l~k~~~~~~~~~~~~~~W~kg~~~lL 436 (1857)
. .+....+.......+...++..+.+.-+.+. ++-+.+ +.|++|+.|.|
T Consensus 444 ~--d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~l-------------Kr~fPgv~Grv 508 (1141)
T KOG0018|consen 444 H--DLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEAL-------------KRLFPGVYGRV 508 (1141)
T ss_pred h--cHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHH-------------HHhCCCccchh
Confidence 3 3333333333333333333333222211111 222222 35899999999
Q ss_pred HhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchhhhhhhhHhhhhhh---hHHHH
Q psy10988 437 NNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLREESGLLRQKLSEQ---KVIIS 510 (1857)
Q Consensus 437 sDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~~~~~~~~~~~~~~---~~~~~ 510 (1857)
.|+..-...-|..||-. +||-+++.+|||+...+. .||+..-.|..+|+||+.++-.+ +-.+|.+- +..|.
T Consensus 509 iDLc~pt~kkyeiAvt~-~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~--~~e~lr~~~g~rlv~D 585 (1141)
T KOG0018|consen 509 IDLCQPTQKKYEIAVTV-VLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKP--VNEKLRELGGVRLVID 585 (1141)
T ss_pred hhcccccHHHHHHHHHH-HHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCc--ccccccCcCCeEEEEE
Confidence 99887222489999999 999999999999999877 99999999999999999998643 23333321 11111
Q ss_pred HHHH--HHHHHhc---cCCCCCCCcchhhhhhhhhHHHhhhccchhhhhHhhhceeeeccccccCCCCCcc-----cc--
Q psy10988 511 KLKT--QLEAAQQ---GTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESDPMNNS-----LD-- 578 (1857)
Q Consensus 511 ~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-- 578 (1857)
-+.- .++.|-+ |.+--... |-|. .-|+ -+.|.|..| +.++.-|++-+.-|... +|
T Consensus 586 vi~ye~e~eka~~~a~gn~Lvcds----~e~A----r~l~-y~~~~r~k~----valdGtl~~ksGlmsGG~s~~~wdek 652 (1141)
T KOG0018|consen 586 VINYEPEYEKAVQFACGNALVCDS----VEDA----RDLA-YGGEIRFKV----VALDGTLIHKSGLMSGGSSGAKWDEK 652 (1141)
T ss_pred ecCCCHHHHHHHHHHhccceecCC----HHHH----HHhh-hcccccceE----EEeeeeEEeccceecCCccCCCcCHH
Confidence 1111 1222221 21111111 1110 0111 122332221 23455555555555332 33
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHH
Q psy10988 579 NTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELH 658 (1857)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~ 658 (1857)
-..+|+.-|+||-+++..+.. . +..+..-+.+..+||-.+.-+.-+...+...|.- .+.+|+-++
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~--~--~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~-----------~~~El~~~~ 717 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK--R--RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQ-----------NELELQRTE 717 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 245666777777776666555 1 1155555566666666655554443333322221 222222222
Q ss_pred HhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhh
Q psy10988 659 AKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKF 696 (1857)
Q Consensus 659 ~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~ 696 (1857)
.-+.+.-.....+..+-+..++...+|++.+...+.++
T Consensus 718 ~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 718 SEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222455555666677777777777766643
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=99.55 E-value=4e-09 Score=136.08 Aligned_cols=248 Identities=12% Similarity=0.177 Sum_probs=159.5
Q ss_pred hhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHH----HHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHH
Q psy10988 944 KLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQ----MNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLA 1019 (1857)
Q Consensus 944 ~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q----~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la 1019 (1857)
-+++-...+..+-.++..+ ..+++... .++. +.+....+.++++.++..+++. ... .+.
T Consensus 143 ~l~~~p~~R~~ii~~l~~l-~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~-----------~l~ 205 (880)
T PRK02224 143 LINATPSDRQDMIDDLLQL-GKLEEYRE---RASDARLGVERVLSDQRGSLDQLKAQIEEK--EEK-----------DLH 205 (880)
T ss_pred HHcCCHHHHHHHHHHHhCC-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------HHH
Confidence 3333334444444455555 45666655 5555 4556677777777777766662 122 344
Q ss_pred HHHHhhhhhhHHHHHHHHHHH----HHHHhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHh
Q psy10988 1020 EEIASKTSIIQTLEIQVKELQ----DKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQ 1094 (1857)
Q Consensus 1020 ~~~~~~~~~~~~l~e~~ee~q----~~~r~~~~~~~e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~ 1094 (1857)
..+..++..++.++.++.+.+ .+...+..++..+..|+.+ + ..+.. +.....+ ..+++.++..
T Consensus 206 ~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~-~--~~l~~---------l~~~~~~l~~~i~~~e~~ 273 (880)
T PRK02224 206 ERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER-R--EELET---------LEAEIEDLRETIAETERE 273 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 566777777777777777665 5666777777777777766 2 12222 2222233 6777777777
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHHhhhHHHHH---HhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhH
Q psy10988 1095 LDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQEESI---ASNFLKNELQSLQDAFSVMKSDNASLLLEKNTL 1171 (1857)
Q Consensus 1095 ~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i---~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~ 1171 (1857)
+.....+|. .++....++..+++++.. ......+.|+.++..+++-+.+
T Consensus 274 ~~~l~~~i~-----------------~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~e----------- 325 (880)
T PRK02224 274 REELAEEVR-----------------DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEE----------- 325 (880)
T ss_pred HHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH-----------
Confidence 777777766 777788888888888777 3344456666666655544443
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCcchhhhhhhhhhhhhhhHHHHHhhH
Q psy10988 1172 METKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSE 1251 (1857)
Q Consensus 1172 ~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le~~l~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~~El~k~~~ 1251 (1857)
+...+ ....+++..+...++...+.+. .+.++.+.+. ..+.+++ ..+......++.+.....
T Consensus 326 --l~~~l-------~~~~~~l~~~~~~~e~~~~~~~-~le~~~~~l~----~~~~~l~----~~~~~~~~~l~~~~~~l~ 387 (880)
T PRK02224 326 --LRDRL-------EECRVAAQAHNEEAESLREDAD-DLEERAEELR----EEAAELE----SELEEAREAVEDRREEIE 387 (880)
T ss_pred --HHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 22222 2234445555555566666776 7777777777 6777777 888889999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy10988 1252 AKDKTLQEMQAALEK 1266 (1857)
Q Consensus 1252 ~~e~e~~elq~ale~ 1266 (1857)
.++.++.++.++++.
T Consensus 388 ~l~~el~el~~~l~~ 402 (880)
T PRK02224 388 ELEEEIEELRERFGD 402 (880)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988873
No 20
>KOG0250|consensus
Probab=99.53 E-value=1.2e-08 Score=130.93 Aligned_cols=552 Identities=20% Similarity=0.255 Sum_probs=285.8
Q ss_pred HHHHHHHhhcccCCCCCccccccccccc---------ccccc----------ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 58 KQKFDEVVNRTKSDNGNQTEVPTTSTVR---------NGFEL----------MPNVEDYNEKIRALNEEVSQLKTKENEL 118 (1857)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----------~~~~e~l~ekl~eLneqi~eLqeK~~eL 118 (1857)
|.-.|.||.+..-+-.|+.-|-|--+-| +-|.| --+|-.+.+.+......+......+..+
T Consensus 161 k~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l 240 (1074)
T KOG0250|consen 161 KEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNL 240 (1074)
T ss_pred HHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4456778887776666666555433332 22222 1345555666667777777777888888
Q ss_pred HHHHHHHHHHHHHHHh----------hHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh
Q psy10988 119 HSRIEELEDKLQQKID----------DEKSVS-YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN 187 (1857)
Q Consensus 119 ~~EIeeLEakLqelK~----------kEKeLs-keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln 187 (1857)
.++|.+.+..|..+.. +...+. ..++++......++..++..++++..+.++.......+..
T Consensus 241 ~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~------- 313 (1074)
T KOG0250|consen 241 KKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE------- 313 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 8888888877775555 333333 8888888888888888888888888888888777777766
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLT 267 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~ 267 (1857)
+...+-++++.+..+..++....+++ +..+..++.++.++..+...+-.+++.|-.+....+
T Consensus 314 ------~r~k~teiea~i~~~~~e~~~~d~Ei------------~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d 375 (1074)
T KOG0250|consen 314 ------ARQKLTEIEAKIGELKDEVDAQDEEI------------EEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD 375 (1074)
T ss_pred ------HhhhhhHHHHHHHHHHHhhhhhhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555555555 555555555555444444444444444443333333
Q ss_pred HHHHHHHHhHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 268 RVKEEKEAEVSGKLEQDAMV-KELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQEST 346 (1857)
Q Consensus 268 ~lkqElE~l~sdk~~leaEL-qeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerK 346 (1857)
.+++. +....++. ..+.++..+.+..++.+..+++.+ +..+..+..+.+.+...+......
T Consensus 376 ~l~k~-------I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~-----------e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 376 RLEKQ-------IADLEKQTNNELGSELEERENKLEQLKKEVEKL-----------EEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333 33333332 333333333333333333333322 444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHhhcccccccCCCC
Q psy10988 347 LAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSEL-QTQLLSVEEALKKKENDLEDWGEG 425 (1857)
Q Consensus 347 LEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~L-Egf~~svk~l~k~~~~~~~~~~~~ 425 (1857)
+......+..+..++......|..++. .+.+ .|... ..+|.-+..+-. .
T Consensus 438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~------------~k~d-------kvs~FG~~m~~lL~~I~r-----------~ 487 (1074)
T KOG0250|consen 438 KEHIEGEILQLRKKIENISEELKDLKK------------TKTD-------KVSAFGPNMPQLLRAIER-----------R 487 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------------cccc-------hhhhcchhhHHHHHHHHH-----------H
Confidence 555555555555555555555555544 1111 22221 222222222222 2
Q ss_pred CCCCcCcc-chhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCC--cccccCcchhhhhhhhH
Q psy10988 426 DDWGTGNS-TELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGS--PSSSDLNTLREESGLLR 499 (1857)
Q Consensus 426 ~~W~kg~~-~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGr--a~ff~Ld~~~~~~~~~~ 499 (1857)
.-.|+.+| |-|.-+++-+.|.|..|||. .|+..+|+|||-+..+.. .++.....+. |++++-.--+.-....+
T Consensus 488 ~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~-~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~ 566 (1074)
T KOG0250|consen 488 KRRFQTPPKGPLGKYVTLKEPKWALAIER-CLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGR 566 (1074)
T ss_pred HhcCCCCCCCCccceeEecCcHHHHHHHH-HHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCcccccccc
Confidence 22233444 67888888457799999999 999999999999999976 6666655553 54443211111111111
Q ss_pred hhhhhhhHHHHHHHHHHHHHhccCCCCCCCcchhh-------------hh-hhhhHHHhhhccchhhh-----hHhhhce
Q psy10988 500 QKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQV-------------QD-RESRIEMLSRENEGLRT-----RVEQLGL 560 (1857)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~-----~~~~~~~ 560 (1857)
..-.+-+-|++-|+- +.|+---| -| .+.+--|-|...+.--+ .-.+.|+
T Consensus 567 ~p~~~~pTil~~le~------------ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~ 634 (1074)
T KOG0250|consen 567 NPGYEFPTILDALEF------------DDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFA 634 (1074)
T ss_pred CCCCCCCceeeeeec------------CChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCcccccc
Confidence 111111111111100 01110000 01 11111111110000000 0011111
Q ss_pred eeec--cccccCCC------CCcccch-hhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy10988 561 VIEN--NYVQESDP------MNNSLDN-TAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSI 631 (1857)
Q Consensus 561 ~~~~--~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~ 631 (1857)
.-.| -|...++| .+-|+|+ +-.|.-+..++..++-.+.......+..|+.-..+-+.|-+.+.++.-.-.+
T Consensus 635 ~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~ 714 (1074)
T KOG0250|consen 635 GGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRK 714 (1074)
T ss_pred CCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 01111111 2234444 3345556666666666666666666666666555555555555555444444
Q ss_pred HHHHhhhccccch-hHhH--------hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhh
Q psy10988 632 LREQLESKDQVDD-SIEK--------TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 632 L~~ql~~~~~~~d-~ee~--------~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~ 698 (1857)
+...+.. +.. +++. ++...|......++.-+....++..+-..++.+..++++.|+..-.++..
T Consensus 715 ~~~em~e---l~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~ 787 (1074)
T KOG0250|consen 715 KRAEMTE---LKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQG 787 (1074)
T ss_pred HHHHHHH---HhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333 111 1222 66777777777777777777788888888888888888888887776665
No 21
>KOG0933|consensus
Probab=99.51 E-value=1.8e-07 Score=118.83 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHH
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSE 400 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~ 400 (1857)
..+-+++.+.+++...+..+.+...+...-..++..++..++.++..+.++.- .++............+...-.+-+.
T Consensus 417 ~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~--~~~~~e~l~q~~~~l~~~~~~lk~~ 494 (1174)
T KOG0933|consen 417 QAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGY--KIGQEEALKQRRAKLHEDIGRLKDE 494 (1174)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555554 3333222222222222222222222
Q ss_pred HHhhHHHH-HHHHhhcccccccCCCCCCCCcCcc-chhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhhhcc
Q psy10988 401 LQTQLLSV-EEALKKKENDLEDWGEGDDWGTGNS-TELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTN 478 (1857)
Q Consensus 401 LEgf~~sv-k~l~k~~~~~~~~~~~~~~W~kg~~-~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L~~n 478 (1857)
+....... .+-+. --...+-|....+ |+|+.+|.-+|.-|.+|++. ..|+.|-++||++.+.+..+|+..
T Consensus 495 ~~~l~a~~~~~~f~-------Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~-~aGgrLynvVv~te~tgkqLLq~g 566 (1174)
T KOG0933|consen 495 LDRLLARLANYEFT-------YQDPEPNFDRSKVKGLVAKLIKVKDRSYATALET-TAGGRLYNVVVDTEDTGKQLLQRG 566 (1174)
T ss_pred HHHHHhhhcccccc-------cCCCCccchHHHHHHHHHHHheeCcchHHHHHHH-HhcCcceeEEeechHHHHHHhhcc
Confidence 22211110 00111 0011234444334 89999999557799999999 999999999999999999888864
Q ss_pred CCC-CcccccCcchhh
Q psy10988 479 EWG-SPSSSDLNTLRE 493 (1857)
Q Consensus 479 ekG-ra~ff~Ld~~~~ 493 (1857)
..- |++++|||.++.
T Consensus 567 ~l~rRvTiIPLnKI~s 582 (1174)
T KOG0933|consen 567 NLRRRVTIIPLNKIQS 582 (1174)
T ss_pred cccceeEEEechhhhh
Confidence 444 499999998763
No 22
>KOG0996|consensus
Probab=99.40 E-value=1e-07 Score=122.56 Aligned_cols=268 Identities=22% Similarity=0.308 Sum_probs=144.7
Q ss_pred HHHHHHhhcc--------cccccCCCC--CCCCcCccchhHhhhhhcc-hhHHHHHHHhhHHHHhchheecCchHHh--H
Q psy10988 407 SVEEALKKKE--------NDLEDWGEG--DDWGTGNSTELNNLRAKCS-EFEKTIVELKSQEELLKQALIDKENELS--E 473 (1857)
Q Consensus 407 svk~l~k~~~--------~~~~~~~~~--~~W~kg~~~lLsDli~~v~-eEy~~AVE~~~Lee~L~~~VVd~~dea~--e 473 (1857)
+|-|+.+-.- ..+.||-.+ +.-..-+++-|+|++. |. |.++.|+=. +|. +.+|+|+.+.|- .
T Consensus 657 cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~-~~d~~~r~aFYf-aLr---dtLV~d~LeQAtRia 731 (1293)
T KOG0996|consen 657 CINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVK-CKDEKFRPAFYF-ALR---DTLVADNLEQATRIA 731 (1293)
T ss_pred HHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhc-cCCHHHHHHHHH-HHh---hhhhhcCHHHHHHHh
Confidence 6777776100 124566554 2222223379999999 96 999999877 555 668999999998 6
Q ss_pred hhhccCCCCcccccCc-chhhhhhhhHhhhhhhhHHHHHHHHHHHHHhccCCCCCCCcch-hhhhhhhhHHHhhhccchh
Q psy10988 474 WGQTNEWGSPSSSDLN-TLREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQ-QVQDRESRIEMLSRENEGL 551 (1857)
Q Consensus 474 ~L~~nekGra~ff~Ld-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 551 (1857)
++....| | +..|+ .|-+-||-+---=+ +|+-- .-||+-.+-||+. .|.+-+.- |++.+.-+
T Consensus 732 ygk~rr~-R--VvTL~G~lIe~SGtmtGGG~--~v~~g---------~mg~~~~~t~~s~~~v~~le~~---l~~~~~~~ 794 (1293)
T KOG0996|consen 732 YGKDRRW-R--VVTLDGSLIEKSGTMTGGGK--KVKGG---------RMGTSIRVTGVSKESVEKLERA---LSKMSDKA 794 (1293)
T ss_pred hcCCCce-E--EEEecceeecccccccCCCC--cCCCC---------CCCCccccCCCCHHHHHHHHHH---HHHHHHHH
Confidence 6666322 2 45566 46677776532111 11100 2344433334432 12222222 22222222
Q ss_pred hhhHhhhceeeeccccccCCCCCcccch-hhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHH
Q psy10988 552 RTRVEQLGLVIENNYVQESDPMNNSLDN-TAQLTAEKERLDEEVTVLSQENIELKKKLEQAV---EKQKGLEEEIQQLEE 627 (1857)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~---~~~k~lee~~~~l~~ 627 (1857)
|.-.+++.- -++-|-.--|--+.+.| .--++++..++...++.++..+++++....+.+ ++.+++++.+..+..
T Consensus 795 ~~~~~~~~~--~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~k 872 (1293)
T KOG0996|consen 795 RQHQEQLHE--LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKK 872 (1293)
T ss_pred HHHHHHHHH--HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHH
Confidence 222222100 00111112233345556 456788888888888888888888887755543 344556666666766
Q ss_pred hhhHHHHHhhh---ccccchhHhH-------hHHHHHHHHHHhhhhHHHhhHHHHHHH-------HhhhHHHHHHHHhHH
Q psy10988 628 DTSILREQLES---KDQVDDSIEK-------TLRNEIQELHAKLINVEALVNQAQVEK-------QALDGKYEELKEKYE 690 (1857)
Q Consensus 628 ek~~L~~ql~~---~~~~~d~ee~-------~l~~~i~el~~rl~~~E~~~~~l~~~k-------~kle~~~~eLk~~~e 690 (1857)
+..++.++--. ...+-+-++. --..+|..++.++.-.+.-.+.+++.. .+.++.+++|.++|+
T Consensus 873 E~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~ 952 (1293)
T KOG0996|consen 873 EVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIE 952 (1293)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 66666421100 1112222222 334566666677766666666666554 356777777777777
Q ss_pred Hhhhhhhh
Q psy10988 691 QMSEKFEN 698 (1857)
Q Consensus 691 ~~e~k~e~ 698 (1857)
+++.+++.
T Consensus 953 ~~e~e~~~ 960 (1293)
T KOG0996|consen 953 DTEKELDD 960 (1293)
T ss_pred HHHHHHHH
Confidence 77764443
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=99.38 E-value=1e-06 Score=114.36 Aligned_cols=85 Identities=14% Similarity=0.243 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQ 402 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LE 402 (1857)
+.++..+...+..+...+...+..+..+..+.+.+...+......+..+.. .+......++.++..+..+++.+..++
T Consensus 362 ~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~--~l~~l~~~~~~l~~~~~~~~~~~~~~~ 439 (880)
T PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED--FLEELREERDELREREAELEATLRTAR 439 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333333333333 333344444444444444444444444
Q ss_pred hhHHHHH
Q psy10988 403 TQLLSVE 409 (1857)
Q Consensus 403 gf~~svk 409 (1857)
.+.....
T Consensus 440 ~~l~~~~ 446 (880)
T PRK02224 440 ERVEEAE 446 (880)
T ss_pred HHHHHHH
Confidence 4444433
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=99.29 E-value=8.3e-06 Score=105.75 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=8.9
Q ss_pred hhHHHHHHHHhHHHhhhhh
Q psy10988 678 LDGKYEELKEKYEQMSEKF 696 (1857)
Q Consensus 678 le~~~~eLk~~~e~~e~k~ 696 (1857)
+..++.++...+++++.++
T Consensus 561 ~~~~~~~~~~~~~~~~~~l 579 (880)
T PRK03918 561 LEKKLDELEEELAELLKEL 579 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555433
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.17 E-value=2.5e-05 Score=100.62 Aligned_cols=223 Identities=15% Similarity=0.245 Sum_probs=125.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhhHHHHHHhh-hhhhhhHHHHHHHHHH-HhhhhhhHHHHhhhhhhhHHHHhHHh
Q psy10988 1020 EEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQ-YRSKVYELEQIQARLE-AERTQWIHEFEVKTNTLSDLQTQLDT 1097 (1857)
Q Consensus 1020 ~~~~~~~~~~~~l~e~~ee~q~~~r~~~~~~~e~~q-~r~k~ye~~~i~~~~e-~~~~~~lee~k~k~~~l~~~~~~~~~ 1097 (1857)
..+..+..+++.|+.-++.-+ -.+.+..+.|.- |.-- -+-+...+.++ ++-+-|=.++++-....+-++
T Consensus 3 ~ql~~~q~E~e~L~~ele~~~---~~l~~~~~~i~~fwspE-lkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~----- 73 (775)
T PF10174_consen 3 AQLERLQRENERLRRELERKQ---SKLGSSMNSIKTFWSPE-LKRERALRKEEAAELSRLKEQLRVTQEENQKAQ----- 73 (775)
T ss_pred cHHHHHHHHHHHHHHHHHHHH---hHHHHHHHhHhcccchh-hHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH-----
Confidence 455666677777776555544 122333444433 5544 33343333333 122223233332222222222
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHHhhhHHHHHHhHHhHHHHHhhhhhhhhhhhhhh----hhHHHHhhHHH
Q psy10988 1098 YNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNA----SLLLEKNTLME 1173 (1857)
Q Consensus 1098 ~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i~~n~~~~~l~kkQ~~fd~~~~e~~----~~~~~k~~~~e 1173 (1857)
-++..+.+.+ .....-.||+.+++......-.++. |++-+.+|+.+-+|+- .+.+-+.++++
T Consensus 74 ------------~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~ 139 (775)
T PF10174_consen 74 ------------EEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEE 139 (775)
T ss_pred ------------HHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344444 4445556777777777665555555 8888888877766642 23445667888
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHH-----------------------HHHHHHHHHHHhhhhhhcccc--------cc
Q psy10988 1174 TKLTLEAQLKELADNETQYKQMQIVY-----------------------EDTQRKLNEELARRDATIATL--------NT 1222 (1857)
Q Consensus 1174 ~~~ele~~~ke~r~~~te~~~~~~~~-----------------------ee~~~~le~~l~renk~l~~~--------~~ 1222 (1857)
++..+++.+.++.....++-+|.-.+ +....+++..+-+..+....+ ..
T Consensus 140 ~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~ 219 (775)
T PF10174_consen 140 LQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQM 219 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhc
Confidence 88888887777777777777776643 233334443333333333111 11
Q ss_pred CCCCcchhhhhhhhhhhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q psy10988 1223 TGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALE 1265 (1857)
Q Consensus 1223 ~e~~dl~~~~~~~l~e~~~~~~El~k~~~~~e~e~~elq~ale 1265 (1857)
..-+-.|.++...|..++-.+..|++..+.++.+..-|+..+.
T Consensus 220 ~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~ 262 (775)
T PF10174_consen 220 ERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE 262 (775)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2223345567788899999999999999999999999988665
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=99.11 E-value=0.00023 Score=92.67 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10988 328 ALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWG 372 (1857)
Q Consensus 328 eLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~ 372 (1857)
.+...+.++...+..+..++..++.....++..+..+...++.+.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555544443
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.01 E-value=0.00053 Score=88.92 Aligned_cols=269 Identities=19% Similarity=0.261 Sum_probs=133.4
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-------hhhhhhccccccCCCCcchhhh---hhhh
Q psy10988 1167 EKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEEL-------ARRDATIATLNTTGAPDLNASI---ENIL 1236 (1857)
Q Consensus 1167 ~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le~~l-------~renk~l~~~~~~e~~dl~~~~---~~~l 1236 (1857)
-|.+++.+..+|-..-.|+-.+.|++--+.++..|...+++ -| --+...|+ +++..|..-+ ..+|
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~-~lkesl~~ke~~~~~Lq----sdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIE-VLKESLRAKEQEAEMLQ----SDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555445444444 32 22334455 5555554222 2455
Q ss_pred hhhhhhhHHHHHhhHhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcc
Q psy10988 1237 KEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSV 1316 (1857)
Q Consensus 1237 ~e~~~~~~El~k~~~~~e~e~~elq~ale~~e~~~~r~~~e~~q~~~~~~~~~l~ekee~~e~~r~~~~~~~~~~~~~~~ 1316 (1857)
+...+++..+..-+-++-.++.+|.-.++..+.++-+++..+ +.++..+.+|+......++--.+ ..|++
T Consensus 360 ~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ki-----e~Lee~l~ekd~ql~~~k~Rl~~-----~~d~~ 429 (775)
T PF10174_consen 360 EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKI-----ENLEEQLREKDRQLDEEKERLSS-----QADSS 429 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc-----ccccc
Confidence 566666666666666666777777777777777766666443 33555678888887777633222 33333
Q ss_pred cc--chhHHHHHHhHHHHHHHHHHHHHh-----------hhhhhHhhhhhhHhHHhhhhHHHhhhhhhhhhh-hHHHHHH
Q psy10988 1317 RY--SDEEHVQELRELQLMNESLQNEVL-----------RSATEIDNMKETITYLEQYNLQLSKSQESSTTL-TLLQSEL 1382 (1857)
Q Consensus 1317 ~~--~~~~h~~~l~~~~~mq~~L~~E~~-----------~~~~e~~~~k~~~~~le~~~~~le~~l~~a~~~-~e~q~~~ 1382 (1857)
.. .-..+=.++.+.+-++..|+.... ..+.+....+-.+..|+.++.+...+|..+.-- +.+-
T Consensus 430 ~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~--- 506 (775)
T PF10174_consen 430 NEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLA--- 506 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHh---
Confidence 32 112222445555666666543321 223333344444444555555444444332211 0000
Q ss_pred HHHHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHH
Q psy10988 1383 AEQRTLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLKTTSETLATKERQLAETKEQLSLA 1462 (1857)
Q Consensus 1383 ~~~k~l~~~lv~~v~~KH~Es~~Yh~eIqrLq~~L~ee~~~~eeL~eq~~~le~rl~~~~~~~~~~e~~~~~~~~~l~l~ 1462 (1857)
.+. .+--..|.+|.-.+.-...+...+..++..+ +....+...++..+...+..++.+...
T Consensus 507 ---s~~---------------~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~-~~~~e~~~r~~~Le~ev~~~~ee~~ka 567 (775)
T PF10174_consen 507 ---SSQ---------------EKKDSEIERLEIELEKKREKHEKLEKQLEKL-RANAELRDRIQQLEQEVTRYREESEKA 567 (775)
T ss_pred ---hcc---------------chhhhHHHHHHHHHHHhhhHHHHHHHHHHHH-HhCHhhcchHHHHHHHHHHHHHHHHHH
Confidence 000 1223457777777766666777666666552 111223333344443343444444444
Q ss_pred HHHHHHHHHh
Q psy10988 1463 QSQLEEVTQL 1472 (1857)
Q Consensus 1463 qae~EEl~~l 1472 (1857)
+++|+.|...
T Consensus 568 q~EVERLl~~ 577 (775)
T PF10174_consen 568 QAEVERLLDI 577 (775)
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=99.00 E-value=0.00026 Score=92.95 Aligned_cols=45 Identities=13% Similarity=0.347 Sum_probs=20.2
Q ss_pred hHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHH
Q psy10988 765 DLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLE 809 (1857)
Q Consensus 765 klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle 809 (1857)
.++..+.+++..+..-...+..+......++|.+......|..++
T Consensus 671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~ 715 (895)
T PRK01156 671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444444444444444444444444444444444433333
No 29
>KOG0018|consensus
Probab=98.95 E-value=0.00017 Score=93.68 Aligned_cols=300 Identities=19% Similarity=0.252 Sum_probs=158.3
Q ss_pred CCCCCcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh--HhhhccCCCCcccccCc-chhhhhhhhHhh
Q psy10988 425 GDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS--EWGQTNEWGSPSSSDLN-TLREESGLLRQK 501 (1857)
Q Consensus 425 ~~~W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~--e~L~~nekGra~ff~Ld-~~~~~~~~~~~~ 501 (1857)
...-..| ..+++|.|. .+|+|+.||-. -.+|.+|-|++++|. .|...- . +....|| +|-.-+||.---
T Consensus 573 ~lr~~~g-~rlv~Dvi~-ye~e~eka~~~----a~gn~Lvcds~e~Ar~l~y~~~~-r--~k~valdGtl~~ksGlmsGG 643 (1141)
T KOG0018|consen 573 KLRELGG-VRLVIDVIN-YEPEYEKAVQF----ACGNALVCDSVEDARDLAYGGEI-R--FKVVALDGTLIHKSGLMSGG 643 (1141)
T ss_pred cccCcCC-eEEEEEecC-CCHHHHHHHHH----HhccceecCCHHHHHHhhhcccc-c--ceEEEeeeeEEeccceecCC
Confidence 3333444 359999999 99999999988 567899999999999 565543 2 3334444 344455544322
Q ss_pred hhh-----hhH-----HHHHHHHHHHHHhccCCCCCCCcchhhhhhhhhHHHhhhccchhhhhHhhhceeeeccccccCC
Q psy10988 502 LSE-----QKV-----IISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESD 571 (1857)
Q Consensus 502 ~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1857)
-|. ..| --.+|-.+|.-.+. .+.-.-.|.-++..-++||.++..+-+.++.-+++
T Consensus 644 ~s~~~wdek~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~-------------- 708 (1141)
T KOG0018|consen 644 SSGAKWDEKEVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQ-------------- 708 (1141)
T ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 221 111 01123334444443 22233345556666677777766665555543433
Q ss_pred CCCcccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccc--cchhHhH-
Q psy10988 572 PMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQ--VDDSIEK- 648 (1857)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~--~~d~ee~- 648 (1857)
..-|..+...++....-++-.++.+|...+...++|+++|-.+... .+.-.-.... +-+-+|+
T Consensus 709 -----------~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~---if~~f~~~igv~ir~Yee~~ 774 (1141)
T KOG0018|consen 709 -----------NELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR---IFKGFCRRIGVRIREYEERE 774 (1141)
T ss_pred -----------HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhcCeeeehHHHHH
Confidence 3334445555555555556677778888888888888877766432 1211111111 2222333
Q ss_pred ----------hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhhhH
Q psy10988 649 ----------TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKK 718 (1857)
Q Consensus 649 ----------~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~~~ 718 (1857)
++++++.-|.-+|.=+-. .+....-.+++..++++.. .++++....
T Consensus 775 ~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~----------------------~~~~~~~~e 830 (1141)
T KOG0018|consen 775 LQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEK----------------------EIEGLKKDE 830 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHH----------------------hHHhhHHHH
Confidence 445555444444432221 2222222223333333333 333344444
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHH
Q psy10988 719 EELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNK 789 (1857)
Q Consensus 719 e~i~kl~kEkk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek 789 (1857)
+.+|+-.++-..++.. .+.....-.+.+.. -.+.+..|.+..++|...|+-+|..+++....|.++=.
T Consensus 831 ~~~~k~i~e~~~~e~k--~k~~~~~~~~e~~e-~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 831 EAAEKIIAEIEELEKK--NKSKFEKKEDEINE-VKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred HHHHHHHhhHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4444444444322221 01112222333333 44556677788888888888888888888777777644
No 30
>KOG0933|consensus
Probab=98.92 E-value=0.0011 Score=86.04 Aligned_cols=115 Identities=22% Similarity=0.268 Sum_probs=71.9
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHhhhHHHHHhhhccccchhHhHhHHHHHHHH
Q psy10988 582 QLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQL----EEDTSILREQLESKDQVDDSIEKTLRNEIQEL 657 (1857)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l----~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el 657 (1857)
++-+....+.++|..+..+++.....+-++..+-+-||..+..- .-..++|.-.+....+-+++..+.++....+.
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777777777777777777766655 34455666555554444555555666666666
Q ss_pred HHhhhhHHHhhHHHHHHHHhh---hHHHHHHHHhHHHhhhhh
Q psy10988 658 HAKLINVEALVNQAQVEKQAL---DGKYEELKEKYEQMSEKF 696 (1857)
Q Consensus 658 ~~rl~~~E~~~~~l~~~k~kl---e~~~~eLk~~~e~~e~k~ 696 (1857)
+.=.-+.|++..++..-++-| +..|+.|+.++..+..++
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555543 335555666666655543
No 31
>PRK01156 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.0044 Score=81.71 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 253 QNHETLIAKLEADLTRVKEEKEAE 276 (1857)
Q Consensus 253 ~qlEkeIa~L~~ql~~lkqElE~l 276 (1857)
.++.+.|..+...+..++..+..+
T Consensus 301 ~~~~~~l~~l~~~l~~l~~~l~~~ 324 (895)
T PRK01156 301 FKYKNDIENKKQILSNIDAEINKY 324 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 32
>KOG0250|consensus
Probab=98.67 E-value=0.0003 Score=91.86 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=34.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES 638 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~ 638 (1857)
-+|.++..++.+...++..+-...-.+-..+..+..+......|..++.+
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q 707 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQ 707 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776666666666666666666666666665555
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.62 E-value=0.012 Score=80.23 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=18.4
Q ss_pred CCCchhhHHHHHhhhhhHhHHHHHHHHHhhc
Q psy10988 37 SDNSDEISEAYDMLQNEYDDLKQKFDEVVNR 67 (1857)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (1857)
-.|.+-|.-++-.=.-..|++|.-+-..+.-
T Consensus 180 ~~hI~kli~~vln~~~~~d~iK~mIi~i~~e 210 (1201)
T PF12128_consen 180 YQHIEKLINAVLNKKLDFDFIKNMIIAILEE 210 (1201)
T ss_pred ccChHHHHHHHHhccccHHHHHHHHHHHHHh
Confidence 3455666656533344577888876666543
No 34
>KOG0979|consensus
Probab=98.50 E-value=0.016 Score=75.84 Aligned_cols=560 Identities=17% Similarity=0.178 Sum_probs=262.3
Q ss_pred CCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHHHH-HHH
Q psy10988 73 GNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENEL--------HSRIEELEDKLQQKIDDEKSVS-YQL 143 (1857)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL--------~~EIeeLEakLqelK~kEKeLs-keL 143 (1857)
++.|-+--++++.+.+ -.+-+..-..+.+.+-+..++++++.+ ..+.+.|-+ ++=+...++.+. ..|
T Consensus 101 e~~~ItR~I~~~k~S~---y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~p-i~LL~eTekAig~~~l 176 (1072)
T KOG0979|consen 101 ETLTITRLISRDKESK---YFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSP-IELLVETEKAIGAEEL 176 (1072)
T ss_pred CceEEEEEEeecCCcc---eeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCCh-HHHHHHHHHhcCchhh
Confidence 3444444445444422 234466667778888888888887665 333333321 111112556665 557
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 144 EEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN----ESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 144 nEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln----~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
..+-..+..+..+-+.++..+.+-..++..|..+++. +.+--+ +..+.+.-..++..+.-+ .+.....++
T Consensus 177 l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~-l~kdVE~~rer~~~~~~Ie~l~~k~~~v-----~y~~~~~ey 250 (1072)
T KOG0979|consen 177 LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDK-LEKDVERVRERERKKSKIELLEKKKKWV-----EYKKHDREY 250 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccc-----chHhhhHHH
Confidence 7777777777777777777777777777777666666 333333 222222222222222111 122222333
Q ss_pred hhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q psy10988 220 EEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEA 299 (1857)
Q Consensus 220 ~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~ 299 (1857)
..++..++.++.++..+.+.+..++..+..+++.+...-...-....+...-.+.+.+.-.++.+++.
T Consensus 251 ------------~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~ 318 (1072)
T KOG0979|consen 251 ------------NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIED 318 (1072)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555544444444444444444445556666666667777
Q ss_pred HHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q psy10988 300 SLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGG 379 (1857)
Q Consensus 300 ~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~ 379 (1857)
++......++.+....+ .++..+....+.+-.....+....--..---...+...+-+......+...++ .+ .
T Consensus 319 ~v~~~~~~le~lk~~~~----~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~--~i-d 391 (1072)
T KOG0979|consen 319 EVEEKKNKLESLKKAAE----KRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQ--EI-D 391 (1072)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhh--hh-h
Confidence 77777777777766666 66666666666666666555543221111111112222222222222222222 11 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhHH-------------------HHHHHHhhcccccccCCCCCCCCcCcc--chhHh
Q psy10988 380 DNDKLATLQQENKVLNEKVSELQTQLL-------------------SVEEALKKKENDLEDWGEGDDWGTGNS--TELNN 438 (1857)
Q Consensus 380 ~~rKL~akq~E~kvLks~Ie~LEgf~~-------------------svk~l~k~~~~~~~~~~~~~~W~kg~~--~lLsD 438 (1857)
..+..+ +...-+.+..+.+..+.. |+.-+.+ +..-|++.+ +.+-+
T Consensus 392 ~~~~~~---~~~~~l~~~kr~~~~~~~~~~~k~~~~l~~~~~d~~dAy~wlre-----------nr~~FK~~vyeP~~m~ 457 (1072)
T KOG0979|consen 392 AEQLKS---QKLRDLENKKRKLKQNSDLNRQKRYRVLRQGSSDAYDAYQWLRE-----------NRSEFKDEVYEPPIMT 457 (1072)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHhhhhhhhHHHHhccCchHHHHHHHHHHH-----------CHHHhcccccCCceEE
Confidence 111111 111111111222222222 3333333 333333332 12333
Q ss_pred hhhhcchhHHHHHHHhhHHHH-hchheecCchHHh---HhhhccCC-----------CCcccccCcchhhh------hhh
Q psy10988 439 LRAKCSEFEKTIVELKSQEEL-LKQALIDKENELS---EWGQTNEW-----------GSPSSSDLNTLREE------SGL 497 (1857)
Q Consensus 439 li~~v~eEy~~AVE~~~Lee~-L~~~VVd~~dea~---e~L~~nek-----------Gra~ff~Ld~~~~~------~~~ 497 (1857)
+-- -+++|...||+ +++-+ +..||+.+.++-. ..++.+.| |+..++.=...|++ -|+
T Consensus 458 l~~-k~~~~A~~lEn-~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gy 535 (1072)
T KOG0979|consen 458 LNV-KNAEFAKYLEN-FVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGY 535 (1072)
T ss_pred Eec-CChHHHHHHHc-ccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHH
Confidence 333 35699999999 77754 5667777777644 33333211 22223333334443 356
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHhccCCCCCCCcchhhhhhhhhHHHhhhccc----h-hhhhH---hhhceeeecccccc
Q psy10988 498 LRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENE----G-LRTRV---EQLGLVIENNYVQE 569 (1857)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~---~~~~~~~~~~~~~~ 569 (1857)
|+.-+..-.++.+-|--. .+.|.-||.. ++-+.+|....-.-. . +-+|. -....|..++|-+.
T Consensus 536 ls~f~~~p~~vm~~Lc~~-------~~ih~IPvs~--~~~~e~~~~~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~ 606 (1072)
T KOG0979|consen 536 LSNFIEAPEPVMSYLCNV-------SKIHRIPVSK--REVEEAIVEVLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSR 606 (1072)
T ss_pred hhhhhcCcHHHHHHHHHh-------ccccccccCc--ccccHHHHHHHhccccCCCchhHHHHhhcCchhhhhhhccccc
Confidence 666666667777665321 2334445543 333333332221111 0 11111 11234555666543
Q ss_pred -CCCCCcccc--hhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhH
Q psy10988 570 -SDPMNNSLD--NTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSI 646 (1857)
Q Consensus 570 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~e 646 (1857)
.-|.|.++- |.-+.+-. +.+-+--+.++...++..+.-...-+-.++++.....-+......++.+. --
T Consensus 607 ~v~~~~~~lk~~~f~~~~~~---l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~-----~~ 678 (1072)
T KOG0979|consen 607 QVITRNDPLKSRNFFSVSPV---LEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLL-----KR 678 (1072)
T ss_pred eeeecCCcchhhhhhccchH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 223333332 22222222 22223334444555555555555555555565555554444444444430 01
Q ss_pred hH-hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 647 EK-TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 647 e~-~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
+| .+...+.....|.+-.|-....+.+.+.++......+=.+.+++-.
T Consensus 679 er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~~~~~~~ 727 (1072)
T KOG0979|consen 679 ERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILDTEDMRI 727 (1072)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 12 5555555555555555555556666666665555444444444433
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.41 E-value=0.043 Score=76.28 Aligned_cols=204 Identities=15% Similarity=0.185 Sum_probs=119.7
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH--------hHHH
Q psy10988 582 QLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK--------TLRN 652 (1857)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~--------~l~~ 652 (1857)
.-..+.-.+-+|+.....+..+..++|.+.+.+...+...+..+......|..+.+. ..-.....+. .+..
T Consensus 276 r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~ 355 (1486)
T PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQA 355 (1486)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667889999999999999999999999999999888888888888888887 4444444442 4455
Q ss_pred HHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhhhHHHHHHHHhhhhhhh
Q psy10988 653 EIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDEKNTLD 732 (1857)
Q Consensus 653 ~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~~~e~i~kl~kEkk~l~ 732 (1857)
.+.+|..++.+.++...++......++.++..+...+..+..++.. ....+..+...+..+...+..++
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae-----------lqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD-----------YQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666555555555555555555555444332221 11111222233333333333333
Q ss_pred hhhhhhh---hHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhh
Q psy10988 733 NIKVEKE---NLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEE 796 (1857)
Q Consensus 733 e~~~~~~---~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~ 796 (1857)
.++.--. -.-..|.+...+..+++..+...-.+++.++++++..+.+-.+..+.+-+.+-+++-
T Consensus 425 ~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~ 491 (1486)
T PRK04863 425 RAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSR 491 (1486)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence 3311110 011123333444666666666666777777777777776666666665555555443
No 36
>KOG0964|consensus
Probab=98.38 E-value=0.029 Score=73.29 Aligned_cols=246 Identities=18% Similarity=0.217 Sum_probs=134.1
Q ss_pred hhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhhhccCCCCccc---------------c-----------cC
Q psy10988 435 ELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSS---------------S-----------DL 488 (1857)
Q Consensus 435 lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L~~nekGra~f---------------f-----------~L 488 (1857)
-|+..|. |.|-|..|+-. + |++.||+.+.+.|..+.+.+...-+++ . .+
T Consensus 599 Pli~kl~-y~p~fdka~k~-V---fgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~ 673 (1200)
T KOG0964|consen 599 PLISKLR-YEPQFDKALKH-V---FGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNV 673 (1200)
T ss_pred chHHHhC-cchhhHHHHHH-H---hCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhhh
Confidence 3888888 99999999988 4 568899999999886666655432211 1 12
Q ss_pred cchhhhhhhhHhhhhhhhH-------HHHHHHHHHHHHh--ccCCCCCC--------CcchhhhhhhhhHHHhhhccchh
Q psy10988 489 NTLREESGLLRQKLSEQKV-------IISKLKTQLEAAQ--QGTSSHSH--------PVDQQVQDRESRIEMLSRENEGL 551 (1857)
Q Consensus 489 d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 551 (1857)
+..+.+.|-|-..|.+-.- -|..+.+++..+. .+.--..| .+.++..+-++-++-..+.-+++
T Consensus 674 ~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i 753 (1200)
T KOG0964|consen 674 NESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI 753 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence 2333333333333333222 2222222222111 11100011 12333444445555666666777
Q ss_pred hhhHhhhceeeeccccccCCCCCcccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-h
Q psy10988 552 RTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDT-S 630 (1857)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek-~ 630 (1857)
+|+...+---.++ + +++- +-+-..|||.+ -.+.|..+..++..+..+|..-...|.+++.....+.-.. .
T Consensus 754 ~~~l~~~~~~~~~-~--e~el---~sel~sqLt~e---e~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~ 824 (1200)
T KOG0964|consen 754 KTSLHKLESQSNY-F--ESEL---GSELFSQLTPE---ELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNT 824 (1200)
T ss_pred HHHHHHHHHHHHh-H--HHHH---hHHHHhhcCHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776654321111 0 0000 01112455543 2467889999999999999999999999888887774432 2
Q ss_pred HHHHHhhh-ccccchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 631 ILREQLES-KDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 631 ~L~~ql~~-~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
.|..++.. ...++|.-+-.++..+......|...+-.+.....+-.-|++.+...+..|-++--
T Consensus 825 kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~ 889 (1200)
T KOG0964|consen 825 KLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKK 889 (1200)
T ss_pred HHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444333 33444444445555555556666666655555555555566666665555554443
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.37 E-value=0.047 Score=74.87 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHH
Q psy10988 346 TLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVS 399 (1857)
Q Consensus 346 KLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie 399 (1857)
...........++.+............. .+...++++..++..+..+..+++
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 484 QQNQAQQAVEELQAEEQELRKERDQAEE--ELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333333333334444444443333333 444444555555555555555554
No 38
>KOG0971|consensus
Probab=98.36 E-value=0.01 Score=76.49 Aligned_cols=245 Identities=22% Similarity=0.270 Sum_probs=127.0
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHH--HHHHHHHHHHHHH
Q psy10988 78 VPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID--DEKSVS--YQLEEKAIEISQL 153 (1857)
Q Consensus 78 ~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~--kEKeLs--keLnEl~~eIr~l 153 (1857)
||-.|.-....+|-|-++++.+++..|.-+-++=+.++.++.+--=.++ ++++-|. +++... ++|-.-....+..
T Consensus 217 v~l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqle-qlqEfkSkim~qqa~Lqrel~raR~e~kea 295 (1243)
T KOG0971|consen 217 VPLPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLE-QLQEFKSKIMEQQADLQRELKRARKEAKEA 295 (1243)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433444456666666666666655444444444444333221111 2222332 222222 4444444333343
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchh
Q psy10988 154 TEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDD 233 (1857)
Q Consensus 154 Enekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~ 233 (1857)
..-+..+-.+|....+...=+.-+-+. . ++.-++++.+++.++..+++++-.++=++.+.++- ..|+-++|..
T Consensus 296 qe~ke~~k~emad~ad~iEmaTldKEm-A-----EERaesLQ~eve~lkEr~deletdlEILKaEmeek-G~~~~~~ss~ 368 (1243)
T KOG0971|consen 296 QEAKERYKEEMADTADAIEMATLDKEM-A-----EERAESLQQEVEALKERVDELETDLEILKAEMEEK-GSDGQAASSY 368 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccchH
Confidence 333333344444443333322222222 1 33444455555555555555666666666666433 4455455433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Q psy10988 234 VKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELE---- 309 (1857)
Q Consensus 234 ~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE---- 309 (1857)
.|.++......|..-+-.+..-.+.-.-..+++..++++..++...+..-...+..++...+..|..+++.++
T Consensus 369 ---qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG 445 (1243)
T KOG0971|consen 369 ---QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG 445 (1243)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2445566666666666666666666666677777777777777777776666777777777777777666543
Q ss_pred ------hhhhccccCCCCcHHHHHHHHHHHHHHH
Q psy10988 310 ------GWTDNDNWGSSGNEQDIEALKKENEEIK 337 (1857)
Q Consensus 310 ------~Lqqe~E~~~~eleeqLeeLEkEIEELe 337 (1857)
.|.+.-- .+++++..++..|..++
T Consensus 446 AE~MV~qLtdknl----nlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 446 AEEMVEQLTDKNL----NLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHhhcc----CHHHHHHHHHHHHHHHH
Confidence 4444444 56666666666655544
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.23 E-value=0.00074 Score=78.41 Aligned_cols=277 Identities=26% Similarity=0.378 Sum_probs=142.2
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHh---HH
Q psy10988 737 EKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERN---LD 813 (1857)
Q Consensus 737 ~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~---l~ 813 (1857)
||+.++..=|-|.. |=+||..|-.....|+.+|..+.+.. .......+..++.+++.+...|.++-.. +.
T Consensus 2 EK~eL~~LNdRla~-YIekVr~LE~~N~~Le~~i~~~~~~~------~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~ 74 (312)
T PF00038_consen 2 EKEELQSLNDRLAS-YIEKVRFLEQENKRLESEIEELREKK------GEEVSRIKEMYEEELRELRRQIDDLSKEKARLE 74 (312)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHhcc------cccCcccccchhhHHHHhHHhhhhHHHHhhHHh
Confidence 34445555566777 99999999999999999999988775 2334555677777777777777776655 33
Q ss_pred HHhhhhhhhhhh-hhhchHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchhhHHHHHHHHHhHHHhh
Q psy10988 814 EKLKEFNEKEIS-YNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNLESVK 892 (1857)
Q Consensus 814 e~lkk~~e~e~~-~~~~~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~nre~e~~klrr~lEe~~ 892 (1857)
-.+..- -.++. +..+++......+++..++..|+..+++. |. +.+++. ..+..|+-+|.-.+
T Consensus 75 ~e~~~l-~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~---~~-----------~r~~le--~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 75 LEIDNL-KEELEDLRRKYEEELAERKDLEEELESLRKDLDEE---TL-----------ARVDLE--NQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------HHHHHH--HHHHHHHHHHHHHH
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh---hh-----------hHhHHH--HHHHHHHHHHHHHH
Confidence 333333 33333 44444444444445555555555444432 22 222222 11222222222222
Q ss_pred --h-----hhhHHHHHHHHHHHHhhHHHHHhhhHHHHHH-HHhHhHHHHHHHHHhhHHh----hhchhh-------hHHH
Q psy10988 893 --Q-----ENTLVVENLQNLIAQKDYEINAKVTELSIIM-EKCKQYEDKCIELESTLDA----KLTDFS-------TKEQ 953 (1857)
Q Consensus 893 --~-----e~~~~~~~lq~~k~~~k~~~~~e~~dl~~~~-~~~k~~E~~~~e~~~k~~~----~~~d~~-------~~~~ 953 (1857)
| ++-.++. ..+-...+. .--.||+..| ..+.+|+..+......++. ++.++. ....
T Consensus 138 ~~heeEi~~L~~~~~--~~~~~e~~~---~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~ 212 (312)
T PF00038_consen 138 QNHEEEIEELREQIQ--SSVTVEVDQ---FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELE 212 (312)
T ss_dssp HHHHHHHHTTSTT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccc--cccceeecc---cccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccc
Confidence 1 1111110 000000000 1122445444 3445666666555544444 444433 3344
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHH
Q psy10988 954 LNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLE 1033 (1857)
Q Consensus 954 ~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~ 1033 (1857)
..+.++.++..++.+++. .+..+.....+|..++.++...+..+....+ . .|..+...+..++
T Consensus 213 ~~~~E~~~~r~~~~~l~~---el~~l~~~~~~Le~~l~~le~~~~~~~~~~~---~-----------~i~~le~el~~l~ 275 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQA---ELESLRAKNASLERQLRELEQRLDEEREEYQ---A-----------EIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhh---hhhccccchhhhhhhHHHHHHHHHHHHHHHH---H-----------hhhccchhHHHHH
Confidence 556666677777777777 6666666677777777777766665554433 2 2333333333333
Q ss_pred H----HHHHHHHHHHhhhHHHHHHhhhhhh
Q psy10988 1034 I----QVKELQDKLRSYTHVENELGQYRSK 1059 (1857)
Q Consensus 1034 e----~~ee~q~~~r~~~~~~~e~~q~r~k 1059 (1857)
. ++.+-++++.---.+..||+.||+=
T Consensus 276 ~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 276 EEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3 3344456777777789999999875
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.21 E-value=0.024 Score=71.38 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10988 1560 KAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVL 1639 (1857)
Q Consensus 1560 ~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VL 1639 (1857)
..+.....|+..|..+++.+. | ..+++..|...+..+...||...+.|..+.=+..+....|+.....|
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lq--------a---Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l 348 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQ--------A---SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL 348 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 444445556666666666643 2 24788889999999999999999998888877777777777776666
Q ss_pred HHH
Q psy10988 1640 EQF 1642 (1857)
Q Consensus 1640 EQF 1642 (1857)
...
T Consensus 349 ke~ 351 (546)
T PF07888_consen 349 KEG 351 (546)
T ss_pred HHH
Confidence 544
No 41
>KOG0976|consensus
Probab=98.15 E-value=0.053 Score=69.50 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=43.8
Q ss_pred hhhHhHHHHHHHHHhhcccCCCCCccccccccccccccccccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 51 QNEYDDLKQKFDEVVNRTKSDNGNQTEVPTTSTVRNGFELMPNVE----DYNEKIRALNEEVSQLKTKENELHSRIEELE 126 (1857)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~l~ekl~eLneqi~eLqeK~~eL~~EIeeLE 126 (1857)
+|-|-|+..--|+.-|+.-..-|-...|-.-+.-+-..++-.-|+ .+.+++..+..++-.++.+...+..+...|+
T Consensus 47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ 126 (1265)
T KOG0976|consen 47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQ 126 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888887776655555444443333332223222222 2334455555555555555555555555554
Q ss_pred HHHHHHHh
Q psy10988 127 DKLQQKID 134 (1857)
Q Consensus 127 akLqelK~ 134 (1857)
+-++-+.+
T Consensus 127 ~ti~~~q~ 134 (1265)
T KOG0976|consen 127 DTIQGAQD 134 (1265)
T ss_pred HHHHHHHH
Confidence 44444443
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.12 E-value=0.0024 Score=72.59 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESE 218 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree 218 (1857)
..|..........+.+...++.+++.+++.+.+..+.+.. ...++. .......+..+..+...... ..++
T Consensus 22 ~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~-~~~kL~~~e~~~de~er~~k~lE~r~~~-------~eer 93 (237)
T PF00261_consen 22 EKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEE-ATEKLEEAEKRADESERARKVLENREQS-------DEER 93 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCH-HHHHHHHHHHHHHHHCHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHH
Confidence 3344444455555555556666666666666555555555 444433 22222222222222222222 2222
Q ss_pred HhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q psy10988 219 VEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLE 298 (1857)
Q Consensus 219 ~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE 298 (1857)
+ +.+...+..+.........++-.+..++..+...+.+.+.+.+...+.+..++.++..+...+..++
T Consensus 94 i------------~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 94 I------------EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp H------------HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 3 3333333344444444455555555555555555555555555554444444444444444444444
Q ss_pred HHHHHHHH
Q psy10988 299 ASLKQKEQ 306 (1857)
Q Consensus 299 ~~LEe~~e 306 (1857)
........
T Consensus 162 ~~~~~~~~ 169 (237)
T PF00261_consen 162 ASEEKASE 169 (237)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhH
Confidence 43333333
No 43
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.10 E-value=0.088 Score=67.50 Aligned_cols=177 Identities=25% Similarity=0.250 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHhhhhhhhhhhHHHhHHHH
Q psy10988 1376 TLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLKTTSETLATKERQLAET 1455 (1857)
Q Consensus 1376 ~e~q~~~~~~k~l~~~lv~~v~~KH~Es~~Yh~eIqrLq~~L~ee~~~~eeL~eq~~~le~rl~~~~~~~~~~e~~~~~~ 1455 (1857)
+++|.++....+...-|...++.|-+|-.-=+-..+=|+..|...+..+..+..+....+..++..+..+..+..
T Consensus 341 AsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~----- 415 (739)
T PF07111_consen 341 ASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ----- 415 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 666666666666666777777777777766666677788888888888888888999998888866666655542
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcccCcchhHhHHHH----hhcccccchHHHHHHHHHHHHHHHH--------HHHHH
Q psy10988 1456 KEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVA----QHVAPVETSRERNELALRLQNLQEE--------KTMLL 1523 (1857)
Q Consensus 1456 ~~~l~l~qae~EEl~~l~eq~er~rAe~El~eksE~v~----~~~~~~~t~~ERdklel~LkqlQ~E--------~eelq 1523 (1857)
-+.+....+..+.+.... .+.+|+ ..+++ .+.=-|+ .++.++..+ ++.+.
T Consensus 416 -----~L~s~ma~ve~a~aRL~s---------L~~RlSyAvrrv~ti-qGL~Ark---~Alaqlrqe~~~~~pp~~~dL~ 477 (739)
T PF07111_consen 416 -----WLESQMAKVEQALARLPS---------LSNRLSYAVRRVHTI-QGLMARK---LALAQLRQEQCPPSPPSVTDLS 477 (739)
T ss_pred -----HHHHHHHHHHHHHHHHHH---------HhHHHHHHhcccchh-HHHHHHH---HHHHHHHhccCCCCCCchhhHH
Confidence 123444444444443333 112221 12222 1111222 223333332 46788
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1524 TEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEER 1578 (1857)
Q Consensus 1524 ~E~~~lrEKe~kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEk 1578 (1857)
.|++.+++-..++..+|. +..||+.-+=-.++|-..+| ...|......+|..
T Consensus 478 ~ELqqLReERdRl~aeLq-lSa~liqqeV~~ArEqgeaE--~~~Lse~aqqLE~~ 529 (739)
T PF07111_consen 478 LELQQLREERDRLDAELQ-LSARLIQQEVGRAREQGEAE--RQQLSEVAQQLEQE 529 (739)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 999999999999998888 88888877755555543333 33455555556555
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.10 E-value=0.00059 Score=77.49 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 327 EALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 327 eeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e 373 (1857)
..++..|..+..++.....+.+........|..++..++.+|..++.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433334444444444444443333
No 45
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.06 E-value=0.11 Score=67.03 Aligned_cols=477 Identities=24% Similarity=0.281 Sum_probs=225.3
Q ss_pred hHHHHHhhhhhHhHHHHHHHHHhhcccCCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 43 ISEAYDMLQNEYDDLKQKFDEVVNRTKSDNGNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRI 122 (1857)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EI 122 (1857)
+.+.+.-|+.|||.+.+.+..-. ..+..+...+.+++..+...+.....+|
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e~-----------------------------a~~qqr~~qmseev~~L~eEk~~~~~~V 52 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEES-----------------------------AQWQQRMQQMSEEVRTLKEEKEHDISRV 52 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788889888777765422 2367888999999999999999999999
Q ss_pred HHHHHHHHHHHh-hHHHHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhh
Q psy10988 123 EELEDKLQQKID-DEKSVS--------YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAK 193 (1857)
Q Consensus 123 eeLEakLqelK~-kEKeLs--------keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~ 193 (1857)
..|+.+|.+++. +..-.. ..-..+...+..+..++..+..++.+.-.....|+.-... ..+.+..
T Consensus 53 ~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~E------qEerL~E 126 (617)
T PF15070_consen 53 QELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQE------QEERLAE 126 (617)
T ss_pred HHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 999999999987 110001 1111222223333333333333333322222222111100 0334444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 194 KDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEK 273 (1857)
Q Consensus 194 ~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqEl 273 (1857)
.+..++.+.....+..+-++.+ .+|--++|..+..- ..++..+.++++.+-.+.++-..+...++.-...
T Consensus 127 LE~~le~~~e~~~D~~kLLe~l--------qsdk~t~SRAlsQN-~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~- 196 (617)
T PF15070_consen 127 LEEELERLQEQQEDRQKLLEQL--------QSDKATASRALSQN-RELKEQLAELQDAFVKLTNENMELTSALQSEQHV- 196 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh--------cccchHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH-
Confidence 4444444444333322222222 22223333322111 1334444444444444444444444444433333
Q ss_pred HHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 274 EAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSS---GNEQDIEALKKENEEIKEKLAKQESTLAKL 350 (1857)
Q Consensus 274 E~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~---eleeqLeeLEkEIEELeeeLEelerKLEeL 350 (1857)
...+...+..+..++..+...++.+.++...|...-.|..+ .....++.+..+.+.+...+--+..-++.+
T Consensus 197 ------~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~l 270 (617)
T PF15070_consen 197 ------KKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRL 270 (617)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443331111 111112223333333333333333334455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhhcccccccCCCCCCC
Q psy10988 351 KTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLL--SVEEALKKKENDLEDWGEGDDW 428 (1857)
Q Consensus 351 QnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~--svk~l~k~~~~~~~~~~~~~~W 428 (1857)
+.+...-+-.++-..+++.. ....|.++..++.-|+..++.+---.. |+.. +.-++...|
T Consensus 271 q~eE~q~~~~~E~~~~ELq~---------~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~---------~~~~ee~~~ 332 (617)
T PF15070_consen 271 QHEESQGKVQLEMAHQELQE---------AQEHLEALSQQNQQLQAQLSLMALPGEGDGLES---------ESEEEEAPQ 332 (617)
T ss_pred HHHHhhhHHHHHHHHHHHHH---------HHHHHHHHHhhhHHHHHHHHhhcCCCCCccccc---------ccccccccC
Confidence 44433333333333333333 345777888888888888877421111 0000 000001111
Q ss_pred CcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhhhccCCCCcccccCcchhhhhhhhHhhhhhhhHH
Q psy10988 429 GTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNTLREESGLLRQKLSEQKVI 508 (1857)
Q Consensus 429 ~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L~~nekGra~ff~Ld~~~~~~~~~~~~~~~~~~~ 508 (1857)
.. ..+.+-+. +.+ .+-+|++. .+..+.+|..-|+..|-++++.
T Consensus 333 ~~---~~ipEd~e--s~E--------~m~~f~~~------------------------a~~~~eeEr~~L~~qL~eqk~~ 375 (617)
T PF15070_consen 333 PM---PSIPEDLE--SRE--------AMVEFFNS------------------------ALAQAEEERARLRRQLEEQKVQ 375 (617)
T ss_pred cC---cccccccc--cHH--------HHHHHHHH------------------------HHhhHHHHHHHHHHHHHHHHHH
Confidence 11 11111111 000 11111111 1566778888899999999998
Q ss_pred HHHHHHHHHHHhccCCCCC----C-------Ccch----hhhhhhhhHHHhhhccchhhhhHhhhceeeeccccccCCCC
Q psy10988 509 ISKLKTQLEAAQQGTSSHS----H-------PVDQ----QVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESDPM 573 (1857)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~----~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1857)
--.+-.++..++.....+. | ++.+ .+..-++|+--+-.++-.|+.||+.|-+.+-- +-.+.|.|
T Consensus 376 ~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~q-l~~et~ti 454 (617)
T PF15070_consen 376 CQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQ-LSGETDTI 454 (617)
T ss_pred HHHhhhccccccccccccccCcccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-hccCccch
Confidence 8888777776655332221 1 1111 22345778888888999999999988654321 11233333
Q ss_pred Ccccc-hhhhhhhhhhhccH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHH
Q psy10988 574 NNSLD-NTAQLTAEKERLDE---EVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILR 633 (1857)
Q Consensus 574 ~~~~~-~~~~~~~~~~~~~~---~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~ 633 (1857)
.-.+. ...|-..-|.|..+ -+..|.++-.++|.+|.. |-+-+..|.-+.|...
T Consensus 455 ~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~e-------lq~lv~~l~~~~~e~~ 511 (617)
T PF15070_consen 455 GEYITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLLE-------LQELVLRLVGDHNEWH 511 (617)
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcchhh
Confidence 33221 11122223333332 244556666666665543 3345555655555433
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.94 E-value=0.02 Score=66.70 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10988 94 VEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQ----KID-DEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQ 165 (1857)
Q Consensus 94 ~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqe----lK~-kEKeLs---keLnEl~~eIr~lEnekk~lqErL~ 165 (1857)
+.++++.+..+-+.|..|......+..+|..+...... .+. .+.++. ..+..+......++.++..+...+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~ 85 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE 85 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence 34567777777777777777777777777776666322 222 555555 5666666666666666666666666
Q ss_pred HHHHHHhhhhHhhhH
Q psy10988 166 SLKDKLRDLDENVTV 180 (1857)
Q Consensus 166 ~LedK~~~L~eEIe~ 180 (1857)
.+..++.........
T Consensus 86 ~~r~k~e~e~~~~~~ 100 (312)
T PF00038_consen 86 DLRRKYEEELAERKD 100 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555444444
No 47
>KOG0977|consensus
Probab=97.93 E-value=0.0026 Score=79.68 Aligned_cols=293 Identities=19% Similarity=0.270 Sum_probs=163.8
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhh---------------hhhhhhHHHhhhhhhhchHHH
Q psy10988 737 EKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNK---------------NNEINDLNKRISLFEENNAFL 801 (1857)
Q Consensus 737 ~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e---------------~~~r~dlek~krk~E~~~~~~ 801 (1857)
||..++.+=|-|.. |=|||-.|---..+|+..|+.|.+.+..+ .+..-+..+-..+|+-++.-+
T Consensus 40 EK~El~~LNDRLA~-YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 40 EKKELQELNDRLAV-YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666777888 99999999999999999999999998887 455666677788899999999
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhh--h-hhhchHH-------HHHhHH-------HhHHHHHHHHHHHHHhhchhhhhHHH
Q psy10988 802 QRSILDLERNLDEKLKEFNEKEI--S-YNENIEA-------SNHKIQ-------QLTQETDTLKAELVAQAESTQLVKQE 864 (1857)
Q Consensus 802 qe~i~dle~~l~e~lkk~~e~e~--~-~~~~~e~-------~qkkik-------dL~~Ele~l~~~L~e~~~~t~~~~~~ 864 (1857)
++.+.++...++.+.+...-+.. . +..++-+ ++..|+ +|.+|...|...|..+-.... +|
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld---~E 195 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD---DE 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HH
Confidence 99999998886666443322111 1 2222222 444444 444444444444433332211 11
Q ss_pred HhhhhcCCcchhhHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH-----h----hHHHHHhhhHHHHHH----H-----H
Q psy10988 865 QALLAAAPVDDNIVIENQQLKQNLESVKQENTLVVENLQNLIAQ-----K----DYEINAKVTELSIIM----E-----K 926 (1857)
Q Consensus 865 ~~~~~~aq~e~nre~e~~klrr~lEe~~~e~~~~~~~lq~~k~~-----~----k~~~~~e~~dl~~~~----~-----~ 926 (1857)
-.+ .++ .+...+-|..+|.=.......-|.++.+..+. . +++|.+-+.|+.++. . .
T Consensus 196 tll----r~d--~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~di 269 (546)
T KOG0977|consen 196 TLL----RVD--LQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDI 269 (546)
T ss_pred HHH----HHH--HHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111 111 22333344444443332112222222332221 1 445555555554433 1 1
Q ss_pred hHhHHHHHHHHHhhHHh---hhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHhh
Q psy10988 927 CKQYEDKCIELESTLDA---KLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKI 1003 (1857)
Q Consensus 927 ~k~~E~~~~e~~~k~~~---~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~ 1003 (1857)
-..|..++.++++-..- ..+......-+..+....|..+|.++++ ....+.+.+.-|-.++.+-++.++...-.
T Consensus 270 E~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~---~n~~L~~~I~dL~~ql~e~~r~~e~~L~~ 346 (546)
T KOG0977|consen 270 ESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES---RNSALEKRIEDLEYQLDEDQRSFEQALND 346 (546)
T ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc---cChhHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 22345555544432221 3333445566677777888888888888 55555555554444544444444433333
Q ss_pred hhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhHHHHHHhhhhhh
Q psy10988 1004 LDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSK 1059 (1857)
Q Consensus 1004 ~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q~~~r~~~~~~~e~~q~r~k 1059 (1857)
|+ ..|+-++.+|+.+-..|+.+-|.. ..+-.||+-||.=
T Consensus 347 kd--------------~~i~~mReec~~l~~Elq~LlD~k---i~Ld~EI~~YRkL 385 (546)
T KOG0977|consen 347 KD--------------AEIAKMREECQQLSVELQKLLDTK---ISLDAEIAAYRKL 385 (546)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHhhchH---hHHHhHHHHHHHH
Confidence 33 256667777777765555544443 4456789988876
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.93 E-value=0.069 Score=68.02 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHH
Q psy10988 252 IQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKK 331 (1857)
Q Consensus 252 i~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEk 331 (1857)
...+.++|..+...+......+.......+....++..+...+..++.....+...+.++..... ..+..+..+..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~----eAr~kL~~~~~ 425 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDEL----EAREKLERYRN 425 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34444455555555554444444444444455555555555555555555555555555554444 44555555555
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10988 332 ENEEIKEKLAKQ--ESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSVE 409 (1857)
Q Consensus 332 EIEELeeeLEel--erKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk 409 (1857)
.+..+...+... -.--+........+...+..+...++...- .+...++.+......+.-|......+.+--..+.
T Consensus 426 ~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~V--Nm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 426 KLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPI--NMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444443332 111122233444566667777777776444 6666666666666666666666666554444444
Q ss_pred HHHh
Q psy10988 410 EALK 413 (1857)
Q Consensus 410 ~l~k 413 (1857)
.++.
T Consensus 504 ~~Iq 507 (569)
T PRK04778 504 QLIQ 507 (569)
T ss_pred HHHH
Confidence 4443
No 49
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.92 E-value=0.063 Score=68.37 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhH
Q psy10988 326 IEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQL 405 (1857)
Q Consensus 326 LeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~ 405 (1857)
...+..++..+...+......+......++.++..+..+...+..+.. ........+.+++..-...+..+..+..-.
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~--eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK--EQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555 555555566666666666666666655555
Q ss_pred HHHHHHHh
Q psy10988 406 LSVEEALK 413 (1857)
Q Consensus 406 ~svk~l~k 413 (1857)
..++-.+.
T Consensus 428 ~~ikr~l~ 435 (569)
T PRK04778 428 HEIKRYLE 435 (569)
T ss_pred HHHHHHHH
Confidence 44544444
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.84 E-value=0.1 Score=66.05 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASL 301 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~L 301 (1857)
...+.+++.++.++..++..+...+.+..-++..+..+.....++..+.-.-+-+...+...+.+....+
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l 348 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL 348 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777777777777777666666666666655566655555554443
No 51
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=97.79 E-value=1e-05 Score=80.69 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=58.4
Q ss_pred cCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchhhhh
Q psy10988 430 TGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLREES 495 (1857)
Q Consensus 430 kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~~~~ 495 (1857)
+|..|.|+|+|. |++.|..||++ +||++++++||++.+.+. ++++++..|+++|++++.++...
T Consensus 2 ~gv~G~l~dli~-v~~~~~~Ave~-~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~ 68 (120)
T PF06470_consen 2 PGVLGRLADLIE-VDPKYEKAVEA-ALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRS 68 (120)
T ss_dssp TTEEEEGGGSEE-ESGGGHHHHHH-HHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGT
T ss_pred CCeeeeHHhcee-cCHHHHHHHHH-HHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccc
Confidence 356689999999 99999999999 999999999999999987 99999999999999999886543
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.79 E-value=0.011 Score=73.78 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 325 DIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 325 qLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e 373 (1857)
++..++..+......+.........++.+++.++....+++.++..+.+
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 3333344444444444444444444444444444443333333333333
No 53
>KOG0971|consensus
Probab=97.74 E-value=0.15 Score=66.46 Aligned_cols=163 Identities=16% Similarity=0.203 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 141 YQLEEKAIEISQLTEH----NRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALRE 214 (1857)
Q Consensus 141 keLnEl~~eIr~lEne----kk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleE 214 (1857)
.++.++..+|-+...+ +.....+.+.+.+-..+...++.. .-.-+. .-..+-+++..++++.+++.+++-+++
T Consensus 265 eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad-~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~de 343 (1243)
T KOG0971|consen 265 EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD-TADAIEMATLDKEMAEERAESLQQEVEALKERVDE 343 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555443332 222233333333333333333333 222222 333444566667777777777777777
Q ss_pred HHHHHhhhcCCCCCCCchhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHH
Q psy10988 215 KESEVEEWGNNDAWGASDDVKEELEKL--------VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAM 286 (1857)
Q Consensus 215 iree~~~~~~~~~~~~~d~~KeeLe~l--------reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaE 286 (1857)
+.-.+ .-++.+++.. --+++.|..+=..+..-+..++-....-++....+.++...+..|
T Consensus 344 letdl------------EILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 344 LETDL------------EILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHH------------HHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 77777 7777777653 346677777777777778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy10988 287 VKELKSKVETLEASLKQKEQELEGWTDNDN 316 (1857)
Q Consensus 287 LqeLekeveElE~~LEe~~eelE~Lqqe~E 316 (1857)
+.++..-.+-+..+++..+..+.+|+..+.
T Consensus 412 ~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 412 LEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877654
No 54
>KOG0962|consensus
Probab=97.72 E-value=0.55 Score=64.24 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=72.0
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchh-----hHHHHHHHHHhHHHhhhhhhHHHHHHHH
Q psy10988 830 IEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDN-----IVIENQQLKQNLESVKQENTLVVENLQN 904 (1857)
Q Consensus 830 ~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~n-----re~e~~klrr~lEe~~~e~~~~~~~lq~ 904 (1857)
++-+...++...++++.+...|.-.++... +--|++ --.+.-+++..+|....+-.++.....+
T Consensus 790 ~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~-----------t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~ 858 (1294)
T KOG0962|consen 790 LERFLKDLKLREKEIEELVSELDSSVDGIR-----------TVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISR 858 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333777777888888888888877555555 223333 1123455666666666443344333344
Q ss_pred HHHHhhHHHHHhhhHHHHHHHHhHhHHHHHHHHHhhHHh---hhchhhhHHHHhhhhhHHHH
Q psy10988 905 LIAQKDYEINAKVTELSIIMEKCKQYEDKCIELESTLDA---KLTDFSTKEQLNKNKMAELS 963 (1857)
Q Consensus 905 ~k~~~k~~~~~e~~dl~~~~~~~k~~E~~~~e~~~k~~~---~~~d~~~~~~~~~~e~~el~ 963 (1857)
++.. +.+.+.....+...+....++|+.+.+++..+.. .+.++.+..+-+..+..++.
T Consensus 859 l~~~-~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~ 919 (1294)
T KOG0962|consen 859 LINL-RNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQ 919 (1294)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHH
Confidence 3333 4555555666666778888999999988877776 44444444444444433333
No 55
>KOG4673|consensus
Probab=97.71 E-value=0.35 Score=61.84 Aligned_cols=187 Identities=22% Similarity=0.208 Sum_probs=112.4
Q ss_pred HHHHHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHH
Q psy10988 1529 LRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLT 1608 (1857)
Q Consensus 1529 lrEKe~kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le 1608 (1857)
+|+++.-+...++-||..|-..|.+..+=--.+...+.+|+.||.++|-+--.++.-+-+--.=.=.||+.||.-+.
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~--- 654 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLS--- 654 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHh---
Confidence 45556666666666665444444322222225566678899999999988665555332222223346777766442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1609 EQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARES 1688 (1857)
Q Consensus 1609 ~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~ 1688 (1857)
.+.++|++..+..-.+|..-|..|.-.+..+... ..++-..+-.|-...-...=|.++-..|+.+|+.+..-
T Consensus 655 -------~~~tawereE~~l~~rL~dSQtllr~~v~~eqge-kqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr 726 (961)
T KOG4673|consen 655 -------KAATAWEREERSLNERLSDSQTLLRINVLEEQGE-KQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNR 726 (961)
T ss_pred -------hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh-HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777776665555443333111 01111211111111111233566667888898887775
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 1689 LSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKE 1729 (1857)
Q Consensus 1689 L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~ 1729 (1857)
+..+.++|-..+.+|+.|+.++..+.....+..++...
T Consensus 727 ---~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q 764 (961)
T KOG4673|consen 727 ---AAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQ 764 (961)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999988887766655543
No 56
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.68 E-value=0.065 Score=68.25 Aligned_cols=88 Identities=23% Similarity=0.351 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10988 324 QDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQT 403 (1857)
Q Consensus 324 eqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEg 403 (1857)
+....+...+..+..........+..-..-+..+...+......+..+.. ........|..++..-...+..+..+..
T Consensus 344 ~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~--~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 344 EIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEE--EQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777 7777788888888888888888888877
Q ss_pred hHHHHHHHHh
Q psy10988 404 QLLSVEEALK 413 (1857)
Q Consensus 404 f~~svk~l~k 413 (1857)
-...++-.++
T Consensus 422 ~l~~ikR~le 431 (560)
T PF06160_consen 422 KLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHH
Confidence 7777777666
No 57
>KOG4643|consensus
Probab=97.68 E-value=0.17 Score=66.70 Aligned_cols=332 Identities=18% Similarity=0.218 Sum_probs=190.4
Q ss_pred cccCCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHH
Q psy10988 67 RTKSDNGNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID------DEKSVS 140 (1857)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~------kEKeLs 140 (1857)
+-.+|+|..+.-|..+.|++...|---+.++..++..|.-++.+--+.+..+..++..+++.+..+++ .++.-.
T Consensus 152 ~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra 231 (1195)
T KOG4643|consen 152 RESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRA 231 (1195)
T ss_pred eccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44578888889999999999999999999999999999999999889999999999999999999888 111100
Q ss_pred ----------------------HHHHH---HHHHHHHHHH-------hhHHHHHHHHHHHHHH--hhhhHhhhHHHHHHh
Q psy10988 141 ----------------------YQLEE---KAIEISQLTE-------HNRFLQEEMQSLKDKL--RDLDENVTVEDIKKA 186 (1857)
Q Consensus 141 ----------------------keLnE---l~~eIr~lEn-------ekk~lqErL~~LedK~--~~L~eEIe~~de~Kl 186 (1857)
..+.+ |..+.-.+.. .+.++.++|+.+.-+. ..+..+|-. .+.++
T Consensus 232 ~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiq-lkqkl 310 (1195)
T KOG4643|consen 232 DRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQ-LKQKL 310 (1195)
T ss_pred hhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHH-HHHHH
Confidence 00111 2333333334 4455555555554444 344445555 55555
Q ss_pred h--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCC-----------CCchhHHHHHHHH--------
Q psy10988 187 N--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNN----DAW-----------GASDDVKEELEKL-------- 241 (1857)
Q Consensus 187 n--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~----~~~-----------~~~d~~KeeLe~l-------- 241 (1857)
+ +..........+++..+..-++-.-+.+-...+--|+. ++- .++.-++..|+.-
T Consensus 311 ~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tlee 390 (1195)
T KOG4643|consen 311 DDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEE 390 (1195)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHH
Confidence 5 33333333333333333222222222222222111110 000 0011112111110
Q ss_pred --HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10988 242 --VVEKQELIEVIQNHET-------LIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWT 312 (1857)
Q Consensus 242 --reE~~eLqeqi~qlEk-------eIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lq 312 (1857)
-.++-++..+...+++ ++.+++..+..+.+.+-.++.--..+-.|...+..++............+.+.+
T Consensus 391 lqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~- 469 (1195)
T KOG4643|consen 391 LQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEEL- 469 (1195)
T ss_pred HhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH-
Confidence 1133334444443333 344444444444444444444444444444444444444444444442222222
Q ss_pred hccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHH
Q psy10988 313 DNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENK 392 (1857)
Q Consensus 313 qe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~k 392 (1857)
+......+++.+....+...|..+..-|++-.-.++.+.+.++.++.++.......+.+.+ ++..+...+..+.-|+.
T Consensus 470 ~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~--k~eeLe~~l~~lE~ENa 547 (1195)
T KOG4643|consen 470 DQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSN--KLEELEELLGNLEEENA 547 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHH
Confidence 1222112245555566666677777777777778888888888889999998888888888 88888888888888988
Q ss_pred HHHHHHHHHH
Q psy10988 393 VLNEKVSELQ 402 (1857)
Q Consensus 393 vLks~Ie~LE 402 (1857)
.|-+.|..|-
T Consensus 548 ~LlkqI~~Lk 557 (1195)
T KOG4643|consen 548 HLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHH
Confidence 8888888873
No 58
>KOG4673|consensus
Probab=97.67 E-value=0.4 Score=61.33 Aligned_cols=163 Identities=23% Similarity=0.286 Sum_probs=89.4
Q ss_pred cCCCCchhhHHHHHhhhhhHhHHHHHHHHHhhcccC--CCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHH
Q psy10988 35 TGSDNSDEISEAYDMLQNEYDDLKQKFDEVVNRTKS--DNGNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLK 112 (1857)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLq 112 (1857)
+|-..+++|++-.- -++|.+++-|+.. -||.+.....++ |-..-...--++.....+..||..+..-.
T Consensus 297 ng~SsT~e~ser~s---------~~v~~el~~~~~~~e~~es~Rs~s~~n-~~~~d~~q~eLdK~~~~i~~Ln~~leaRe 366 (961)
T KOG4673|consen 297 NGRSSTDEISERIS---------DFVSRELDSRLDTSELNESQRSSSATN-VSDSDDVQLELDKTKKEIKMLNNALEARE 366 (961)
T ss_pred CCCccccccccccc---------hHHHHHhccchhhHHhhhccCCCCCcc-ccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788877542 2466677766543 244443322222 21111122334555566666666666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHH
Q psy10988 113 TKENELHSRIEELEDKLQQKID---DEKS----VSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKK 185 (1857)
Q Consensus 113 eK~~eL~~EIeeLEakLqelK~---kEKe----LskeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~K 185 (1857)
.++-....+-..|+...-..+. ..+. ++-.-.+|.++|..++.....+-.+-..|......|+.++.. +
T Consensus 367 aqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~----~ 442 (961)
T KOG4673|consen 367 AQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAA----A 442 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----h
Confidence 4444444444444443322222 2222 225556778888888888877777777777777777776666 4
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHH
Q psy10988 186 ANESAIAKKDEVIEKLKAELESVEKA 211 (1857)
Q Consensus 186 ln~eql~~~ee~iEelk~ELEelEke 211 (1857)
+.+..++...+.|..+..+=+.+-+.
T Consensus 443 l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 443 LLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555566665555555544443
No 59
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.65 E-value=9.8e-05 Score=95.12 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=26.3
Q ss_pred CCCcchhhhhhhhhHHHhhhccchhhhhHhhh
Q psy10988 527 SHPVDQQVQDRESRIEMLSRENEGLRTRVEQL 558 (1857)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1857)
+.|...-.+-+.+-++.|..||++|+.++..+
T Consensus 554 ~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 554 DNPTSKAEQIKKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777778899999999999999999665
No 60
>KOG0977|consensus
Probab=97.60 E-value=0.11 Score=65.80 Aligned_cols=145 Identities=23% Similarity=0.286 Sum_probs=108.5
Q ss_pred CCcccccccccccc---ccccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q psy10988 73 GNQTEVPTTSTVRN---GFELMPNV---EDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID------------ 134 (1857)
Q Consensus 73 ~~~~~~~~~~~~~~---~~~~~~~~---e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~------------ 134 (1857)
+-.|+.| .+|..+ ++-+.|.- ...+..+..||+.+..-=+++..+..+=..|+.+|..++.
T Consensus 11 ~~~t~~~-~~tssg~~~~~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ 89 (546)
T KOG0977|consen 11 SGTTELP-SSTSSGVSASNAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAK 89 (546)
T ss_pred cccCcCC-CccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHH
Confidence 4455566 555555 56666643 3455667777777777777777788888888888887777
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHH
Q psy10988 135 DEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVE 209 (1857)
Q Consensus 135 kEKeLs---keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelE 209 (1857)
.+.++. +.+.+.......++.++.-+..++..+..+..+....... ...++. ...+..++..+..++.....++
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~-~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRG-AREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 566666 7788888888899999999999999999999998888888 777777 6777777777777777777777
Q ss_pred HHHHHHHHHH
Q psy10988 210 KALREKESEV 219 (1857)
Q Consensus 210 keleEiree~ 219 (1857)
+++..++.+.
T Consensus 169 ~e~~~Lk~en 178 (546)
T KOG0977|consen 169 DELKRLKAEN 178 (546)
T ss_pred HHHHHHHHHh
Confidence 7777777666
No 61
>KOG4643|consensus
Probab=97.58 E-value=0.16 Score=66.93 Aligned_cols=255 Identities=20% Similarity=0.194 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh----hHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10988 95 EDYNEKIRALNEEVSQLKTKENELHSRI--EELEDKLQQKID----DEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQ 165 (1857)
Q Consensus 95 e~l~ekl~eLneqi~eLqeK~~eL~~EI--eeLEakLqelK~----kEKeLs---keLnEl~~eIr~lEnekk~lqErL~ 165 (1857)
+.++.+-.+|.+...-+++++..+.++- ..++..|-+++. +.-+.. .++.++-.++.+++.....+.-.|.
T Consensus 267 eelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~e 346 (1195)
T KOG4643|consen 267 EELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQME 346 (1195)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445555555555666666666666665 566666666666 222222 7777777777777777777777776
Q ss_pred HHHH-------HHhhhhHhhhHHHHH--Hhh----------------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 166 SLKD-------KLRDLDENVTVEDIK--KAN----------------ESAIAKKDEVIEKLKAELESVEKALREKESEVE 220 (1857)
Q Consensus 166 ~Led-------K~~~L~eEIe~~de~--Kln----------------~eql~~~ee~iEelk~ELEelEkeleEiree~~ 220 (1857)
.++. -...+.-+.+. ++. -++ ...+....+.+-+++.+..++..+.+.+.+++
T Consensus 347 llq~~se~~E~en~Sl~~e~eq-Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri- 424 (1195)
T KOG4643|consen 347 LLQIFSENEELENESLQVENEQ-LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERI- 424 (1195)
T ss_pred HhhhhhcchhhhhhhHHHHHHH-hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHH-
Confidence 6666 22222222222 222 000 44455555555556666666666777777766
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHhhhHHHHHHHHHHHHHHHHH
Q psy10988 221 EWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRV---KEEKEAEVSGKLEQDAMVKELKSKVETL 297 (1857)
Q Consensus 221 ~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~l---kqElE~l~sdk~~leaELqeLekeveEl 297 (1857)
......+-.++...+.|....-++...+.-.+....+. ...+.++.....++.++..++...+..+
T Consensus 425 -----------~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknl 493 (1195)
T KOG4643|consen 425 -----------NQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNL 493 (1195)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444555555555555555555555555555444 3345556666666677777777777777
Q ss_pred HHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 298 EASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEM 366 (1857)
Q Consensus 298 E~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~ 366 (1857)
...|.+-.-++..|....+ .++.++......+..+..+++.+.+.+..+..+-..|-++|..+..
T Consensus 494 nk~L~~r~~elsrl~a~~~----elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 494 NKSLNNRDLELSRLHALKN----ELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888 8888888888888888888888888888888888888888877766
No 62
>KOG0612|consensus
Probab=97.58 E-value=0.096 Score=70.16 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhh
Q psy10988 649 TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~ 698 (1857)
.|++.+..+.+.|++...-+..+.....++...-..|....+++...++.
T Consensus 512 ~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~ 561 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESED 561 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHH
Confidence 66666666666666666666666666666666666666666666655554
No 63
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.56 E-value=0.37 Score=61.65 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHH
Q psy10988 252 IQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKK 331 (1857)
Q Consensus 252 i~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEk 331 (1857)
...+.++|..+......+...+..-..--+.....+..+...+..++.....+...+.+|..... ..++.+..+..
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~----~Ar~~l~~~~~ 421 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEK----EAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34555666666666666666666666667777777777777788888888888888888877777 77788888888
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHH
Q psy10988 332 ENEEIKEKLAKQES--TLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSEL 401 (1857)
Q Consensus 332 EIEELeeeLEeler--KLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~L 401 (1857)
.+..+...+...+= -=++...........|..+...+....- .+...++.+.....-...|...+.++
T Consensus 422 ~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pi--nm~~v~~~l~~a~~~v~~L~~~t~~l 491 (560)
T PF06160_consen 422 KLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPI--NMDEVNKQLEEAEDDVETLEEKTEEL 491 (560)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777754431 0033333445566777777777777777 77777777777777777777776664
No 64
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.56 E-value=0.53 Score=59.79 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy10988 1167 EKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLN 1207 (1857)
Q Consensus 1167 ~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le 1207 (1857)
|+..++-.+.....+..++...-.++-+++..|..+.+.-.
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~ 154 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKN 154 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555566556666666666666655444
No 65
>KOG0978|consensus
Probab=97.51 E-value=0.73 Score=60.11 Aligned_cols=69 Identities=28% Similarity=0.269 Sum_probs=41.3
Q ss_pred CCCCCcccchhhhhhhhhhhccHH----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh
Q psy10988 570 SDPMNNSLDNTAQLTAEKERLDEE----------VTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES 638 (1857)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~ 638 (1857)
++|+-...++.++.--+.+.+..+ ...+..++..|--.+....+..++...+......+-.-|+.++.+
T Consensus 226 ~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s 304 (698)
T KOG0978|consen 226 SKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSS 304 (698)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 444555556655555444443222 344556666666666677777777666666666666677777766
No 66
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.98 Score=60.74 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcchhhhhhhhhHHHhhhccchhhhhHhhhc
Q psy10988 507 VIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLG 559 (1857)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1857)
.-++++..++...-.+. ....+....+.+-+....+-+..+++++-
T Consensus 501 ~e~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~e~~~ 546 (908)
T COG0419 501 EEIEELEKELRELEEEL-------IELLELEEALKEELEEKLEKLENLLEELE 546 (908)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544443 33344444455555555555555555543
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.47 E-value=0.066 Score=66.96 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=12.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 189 SAIAKKDEVIEKLKAELESVEKALREK 215 (1857)
Q Consensus 189 eql~~~ee~iEelk~ELEelEkeleEi 215 (1857)
..+..++..+..+...+..++..+.-.
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555544444333
No 68
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.43 E-value=0.00034 Score=90.36 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCC-Cccchhhhhhhhhh
Q psy10988 666 ALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGK-DSVDIDTLIKNLQS 716 (1857)
Q Consensus 666 ~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~-ek~~~~~~ik~l~~ 716 (1857)
+.++.|..+-..|+.++..|...+..++.+++.-+.. +.....++|=-|.+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~ 554 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRD 554 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCC
Confidence 3444466666667777777777777777766652211 22334444444444
No 69
>KOG0963|consensus
Probab=97.21 E-value=0.82 Score=58.56 Aligned_cols=104 Identities=25% Similarity=0.309 Sum_probs=82.3
Q ss_pred hHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhhhhhhh-hhhchHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHH
Q psy10988 786 DLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEIS-YNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQE 864 (1857)
Q Consensus 786 dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~e~e~~-~~~~~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~ 864 (1857)
.+++-++.+...+..+|.+.-++++..++.+.-+ =.||+ +...+++.|+.|-+|.+|.+.|+..|..+..++.+-+
T Consensus 200 ~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k-~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~-- 276 (629)
T KOG0963|consen 200 ELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAK-AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAK-- 276 (629)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--
Confidence 4566677888888999999999999988888888 78999 9999999999999999999999999999988887210
Q ss_pred HhhhhcCCcchh-hHHHHHHHHHhHHHhh
Q psy10988 865 QALLAAAPVDDN-IVIENQQLKQNLESVK 892 (1857)
Q Consensus 865 ~~~~~~aq~e~n-re~e~~klrr~lEe~~ 892 (1857)
--.+++.-.-+| .+.++++|--|++...
T Consensus 277 ~~~i~~~~~~L~~kd~~i~~L~~di~~~~ 305 (629)
T KOG0963|consen 277 IDDIDALGSVLNQKDSEIAQLSNDIERLE 305 (629)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 001112222233 8889999988888776
No 70
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.17 E-value=0.83 Score=54.46 Aligned_cols=217 Identities=21% Similarity=0.264 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 137 KSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKE 216 (1857)
Q Consensus 137 KeLskeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEir 216 (1857)
.++...+..+..+.+.+....+-+.+.++++..+...+.+++.. ...+.+ .+.+.+..+-+.++.++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~e-lK~kR~------------ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQE-LKEKRD------------EINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 34445555555555555555566666666666655555555555 332222 22222333333344444
Q ss_pred HHHhhhcCCCCCCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q psy10988 217 SEVEEWGNNDAWGASDDVKEELEKLVVEKQEL---IEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSK 293 (1857)
Q Consensus 217 ee~~~~~~~~~~~~~d~~KeeLe~lreE~~eL---qeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLeke 293 (1857)
+.. .|.| -.-|....++.+++.+..-+.+. -+.--.+-..|+.++..+...++-++.. ..+..+-+++..+..+
T Consensus 97 e~~-~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~ 173 (294)
T COG1340 97 EKR-NEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKK 173 (294)
T ss_pred HHh-hhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444 2222 23333344433333332222111 0111122333444444444444333322 3344455555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 294 VETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 294 veElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e 373 (1857)
..++...|..+-++......... .+-+....+.++..++...+-......+.+..++..++..|..++..|..++.
T Consensus 174 ~~e~~eki~~la~eaqe~he~m~----k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 174 AREIHEKIQELANEAQEYHEEMI----KLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444 44555555555555555555555555555555555566666666666665554
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.12 E-value=0.00039 Score=89.66 Aligned_cols=297 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred hhchhhhHHHHhhhhhHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHH---
Q psy10988 944 KLTDFSTKEQLNKNKMAELSAMLESVQA-ENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLA--- 1019 (1857)
Q Consensus 944 ~~~d~~~~~~~~~~e~~el~~~le~~e~-~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la--- 1019 (1857)
.+.++...+..++.++..+...+...+. -.-...-+......+..+++.++..+.+-.-.++.|+.++..++..+.
T Consensus 201 ~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~ 280 (713)
T PF05622_consen 201 QISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELR 280 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777666665551 011222334455666777777776666555567777777776665431
Q ss_pred ---HHHHhhhhhhHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhHHHHHHH-HHHHhhhhhhHHHHhh-hhhhhHHHHh
Q psy10988 1020 ---EEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELEQIQA-RLEAERTQWIHEFEVK-TNTLSDLQTQ 1094 (1857)
Q Consensus 1020 ---~~~~~~~~~~~~l~e~~ee~q~~~r~~~~~~~e~~q~r~k~ye~~~i~~-~~e~~~~~~lee~k~k-~~~l~~~~~~ 1094 (1857)
..+...-.....|+..+.+..+.-..+++..+++..||.|+=+...+.+ ..+ |++--.- ..+.-.++++
T Consensus 281 q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~------Lee~N~~l~e~~~~LEee 354 (713)
T PF05622_consen 281 QENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKE------LEEDNAVLLETKAMLEEE 354 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 1112222223333333333334444688899999999999544443332 222 4443333 5667778888
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHHhhhHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHH
Q psy10988 1095 LDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMET 1174 (1857)
Q Consensus 1095 ~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~ 1174 (1857)
+..+++.+++.....+.+.+++..+ .+..-+...+.-.+..++...+.+..+...+......+.+.
T Consensus 355 l~~~~~~~~qle~~k~qi~eLe~~l--------------~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 355 LKKARALKSQLEEYKKQIQELEQKL--------------SEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777776653322222222222222 22211111111122222222222222211222223333333
Q ss_pred HHHHHHHHHHHhhh-------hhhhhHHHHHH--HHHHHHHHHHHhhhhhhcc-ccc---cCCCCcchhhhhhhhhhhhh
Q psy10988 1175 KLTLEAQLKELADN-------ETQYKQMQIVY--EDTQRKLNEELARRDATIA-TLN---TTGAPDLNASIENILKEKDA 1241 (1857)
Q Consensus 1175 ~~ele~~~ke~r~~-------~te~~~~~~~~--ee~~~~le~~l~renk~l~-~~~---~~e~~dl~~~~~~~l~e~~~ 1241 (1857)
..+|..++-..... +.....+...+ -++...+- .|.+||+.|. +.. ...+..|. +.|.+..+
T Consensus 421 ~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~-rLe~ENk~Lk~~~e~~~~e~~~~L~----~~Leda~~ 495 (713)
T PF05622_consen 421 NEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLL-RLEHENKRLKEKQEESEEEKLEELQ----SQLEDANR 495 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhccccccccccccccccccccchhhhccchHHHHHHH-HHHHHHHHHHHHhccchhhHHHHHH----HHHHHHHH
Confidence 33333221110000 01111111111 13445555 6778888884 111 12234444 77787777
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHH
Q psy10988 1242 TLSEMLKKSEAKDKTLQEMQAALE 1265 (1857)
Q Consensus 1242 ~~~El~k~~~~~e~e~~elq~ale 1265 (1857)
....|+...+..-....+++.+++
T Consensus 496 ~~~~Le~~~~~~~~~~~~lq~qle 519 (713)
T PF05622_consen 496 RKEKLEEENREANEKILELQSQLE 519 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766666667766666
No 72
>PRK11637 AmiB activator; Provisional
Probab=97.12 E-value=0.31 Score=60.11 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhH
Q psy10988 111 LKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 111 LqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~ 180 (1857)
.+.++.++..++..++.++...+.....+...+..+..+|..+...+.-.+.+|..++.+...+..+|..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433332222333344444444444444444444444444444444444444
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.12 E-value=1.8 Score=56.37 Aligned_cols=225 Identities=21% Similarity=0.336 Sum_probs=105.6
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhcc---ccch--hHhHhHHHHHHHH
Q psy10988 583 LTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKD---QVDD--SIEKTLRNEIQEL 657 (1857)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~---~~~d--~ee~~l~~~i~el 657 (1857)
|..+...+...+..|++++..+++...+...+..+||..+.. |..|+.... -.+. ..|..|...+..|
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e-------Lk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L 92 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE-------LKNQMAEPPPPEPPAGPSEVEQQLQAEAEHL 92 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhcccCCccccccchHHHHHHHHHHHHH
Confidence 333444455566666666666666666666665555555444 444444311 1111 1222455555555
Q ss_pred HHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Q psy10988 658 HAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDEKNTLDNIKVE 737 (1857)
Q Consensus 658 ~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~~~e~i~kl~kEkk~l~e~~~~ 737 (1857)
..++++.++..........-|..-+.+.+..|.+++..++. +.+ .
T Consensus 93 ~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~--------------------------------~~e---~ 137 (617)
T PF15070_consen 93 RKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELER--------------------------------LQE---Q 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHH---H
Confidence 55554444433333333334444444444444444443332 111 1
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHh---HHH
Q psy10988 738 KENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERN---LDE 814 (1857)
Q Consensus 738 ~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~---l~e 814 (1857)
.....+.|..++. +---++......-.|.+++.+|.+++-.=.+.-++|.-+.---.--.+.++..+.+++.. +.+
T Consensus 138 ~~D~~kLLe~lqs-dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 138 QEDRQKLLEQLQS-DKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHHHHHHhhhcc-cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223445555555 333444444455577777777777554444444444332222222222334444444433 456
Q ss_pred Hhhhhhhhhhh-hhhchHHHHHhHH-------HhHHHHHHHHHHH
Q psy10988 815 KLKEFNEKEIS-YNENIEASNHKIQ-------QLTQETDTLKAEL 851 (1857)
Q Consensus 815 ~lkk~~e~e~~-~~~~~e~~qkkik-------dL~~Ele~l~~~L 851 (1857)
+++-| +.|+. +...-+.+-..++ .|+-|-++|-..+
T Consensus 217 ~le~K-~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 217 KLELK-SQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQL 260 (617)
T ss_pred HHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 66666 5554333222222 5555555555443
No 74
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.03 E-value=1.9 Score=55.08 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=37.4
Q ss_pred HHHHHhhhhhhhhcchHHHHHHHHhhhHHHHHHhHHhHHHHHhhhhhhhhhh
Q psy10988 1107 LVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMK 1158 (1857)
Q Consensus 1107 ~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i~~n~~~~~l~kkQ~~fd~~~ 1158 (1857)
++..++...+.++...|.+|-+...|++..-.-...+...|++-+...+...
T Consensus 38 ~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~ 89 (522)
T PF05701_consen 38 KAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAE 89 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888888888888888777666667777776665554443
No 75
>PRK11637 AmiB activator; Provisional
Probab=97.03 E-value=0.22 Score=61.28 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy10988 197 VIEKLKAELESVEKALREKESEVEEWGNND 226 (1857)
Q Consensus 197 ~iEelk~ELEelEkeleEiree~~~~~~~~ 226 (1857)
.+..++..|+..++.+....-..-..|+.+
T Consensus 111 eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~ 140 (428)
T PRK11637 111 SIAKLEQQQAAQERLLAAQLDAAFRQGEHT 140 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 333333333333333333333332344433
No 76
>KOG0612|consensus
Probab=96.96 E-value=1.7 Score=59.05 Aligned_cols=299 Identities=22% Similarity=0.224 Sum_probs=139.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh-----hHHHHH---HHHHHHHHHHHHHHH
Q psy10988 87 GFELMPNVEDYNEKIRALNEEVSQLK---TKENELHSRIEELEDKLQQKID-----DEKSVS---YQLEEKAIEISQLTE 155 (1857)
Q Consensus 87 ~~~~~~~~e~l~ekl~eLneqi~eLq---eK~~eL~~EIeeLEakLqelK~-----kEKeLs---keLnEl~~eIr~lEn 155 (1857)
++-|-|..-+-...+..++.+...+. ....++...|+.+.....+++. .-.++. ..+.+...+++.++.
T Consensus 436 ~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~ 515 (1317)
T KOG0612|consen 436 LQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEA 515 (1317)
T ss_pred hhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34444554555455555555555555 3334455555555554444443 112222 556666666666777
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhHH--HHHHhh-----------------------HHHHhhhHHHHHHHHHHHHHHHH
Q psy10988 156 HNRFLQEEMQSLKDKLRDLDENVTVE--DIKKAN-----------------------ESAIAKKDEVIEKLKAELESVEK 210 (1857)
Q Consensus 156 ekk~lqErL~~LedK~~~L~eEIe~~--de~Kln-----------------------~eql~~~ee~iEelk~ELEelEk 210 (1857)
..+-+.++|..++.+...+....+.- ...++. ...+....+.-..+...+..++.
T Consensus 516 ~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~ 595 (1317)
T KOG0612|consen 516 LVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEE 595 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 77777777766666655553333220 111111 11111111111111222222222
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Q psy10988 211 ALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKEL 290 (1857)
Q Consensus 211 eleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeL 290 (1857)
....+-... ..++..++..+...-.+-+.+-.+..+|+.+.+.+.+...++.+.+..+......++..
T Consensus 596 ~k~~ls~~~------------~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ 663 (1317)
T KOG0612|consen 596 SKSKLSKEN------------KKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDS 663 (1317)
T ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222222222 22333333334444444444455555555555555555555555544333333334433
Q ss_pred HH--HHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 291 KS--KVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMEL 368 (1857)
Q Consensus 291 ek--eveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EI 368 (1857)
++ .-..++..++-....++....+.. .+ +|+.- ..+.......+.+=+.-...+..-+...+.+.
T Consensus 664 ek~~~e~~~e~~lk~~q~~~eq~~~E~~----~~--~L~~~-------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~ 730 (1317)
T KOG0612|consen 664 EKEALEIKLERKLKMLQNELEQENAEHH----RL--RLQDK-------EAQMKEIESKLSEEKSAREKAENLLLEIEAEL 730 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHhhH-------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 33 222233333333333333333333 11 22222 33333333333333333334445555577777
Q ss_pred hhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10988 369 EEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEAL 412 (1857)
Q Consensus 369 eel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~ 412 (1857)
+-++. .+-....++..++-..+.+...+-+|+-.+.......
T Consensus 731 e~L~~--d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r 772 (1317)
T KOG0612|consen 731 EYLSN--DYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKR 772 (1317)
T ss_pred HHHhh--hhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 77877 6666667777777777888888888777666444443
No 77
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.94 E-value=0.96 Score=57.39 Aligned_cols=225 Identities=20% Similarity=0.217 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHH----HHHHHHHHHHHH
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLK----AELESVEKALRE 214 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk----~ELEelEkeleE 214 (1857)
.....|..++...+...+.+.++...+ ..+.....+... ....+. +......+.++...+ ..|.+.++-+..
T Consensus 180 ~~~~~fl~rtl~~e~~~~~L~~~~~A~-~~~~~~l~~~~e-~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~ 257 (511)
T PF09787_consen 180 TAVVEFLKRTLKKEIERQELEERPKAL-RHYIEYLRESGE-LQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIES 257 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 444555666666666666666666633 334444444433 334444 333333444444433 445556666666
Q ss_pred HHHHHhhhcCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q psy10988 215 KESEVEEWGNNDAWGA-SDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSK 293 (1857)
Q Consensus 215 iree~~~~~~~~~~~~-~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLeke 293 (1857)
+++.. |. +.... ... -+++.++.|...+++.+..++-+|..++.++...+..+..-..-......+++..-..
T Consensus 258 LK~~~---~~-~~~~~~~~~--~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~ 331 (511)
T PF09787_consen 258 LKEGC---LE-EGFDSSTNS--IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEP 331 (511)
T ss_pred HHhcc---cc-cccccccch--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77644 22 22222 000 3344445555555555555555555555555555544443322222222332222222
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 294 VETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQE--STLAKLKTHSESLQKQLLEKEMELEEW 371 (1857)
Q Consensus 294 veElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEele--rKLEeLQnE~EeLKsqLeele~EIeel 371 (1857)
....+..+.-...++..+.+......+.+.-++...+.++..+...+...- ..-.++...+..+-+.|-.+...++.+
T Consensus 332 ~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l 411 (511)
T PF09787_consen 332 ELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESL 411 (511)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHH
Confidence 222266666677777777666654555666777777777777777666644 122333344444444444444444433
Q ss_pred cc
Q psy10988 372 GN 373 (1857)
Q Consensus 372 ~e 373 (1857)
..
T Consensus 412 ~~ 413 (511)
T PF09787_consen 412 GS 413 (511)
T ss_pred Hh
Confidence 33
No 78
>KOG1029|consensus
Probab=96.93 E-value=0.28 Score=63.35 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHH
Q psy10988 257 TLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEI 336 (1857)
Q Consensus 257 keIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEEL 336 (1857)
.++..+.++..+.++..-.+..-+..+..+++.|+.++.++..+|.+.+-.+..-...++ .+..+....-.++..+
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie----~~~~q~e~~isei~ql 491 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIE----EVTKQRELMISEIDQL 491 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHH----HhhhHHHHHHHHHHHH
Confidence 445555555555555555555556666666666666666666666666555555555555 4455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 337 KEKLAKQESTLAKLKTHSESLQKQLLEKEME 367 (1857)
Q Consensus 337 eeeLEelerKLEeLQnE~EeLKsqLeele~E 367 (1857)
..+|.+.+.++-.+--+.-.+..+|.....-
T Consensus 492 qarikE~q~kl~~l~~Ekq~l~~qlkq~q~a 522 (1118)
T KOG1029|consen 492 QARIKELQEKLQKLAPEKQELNHQLKQKQSA 522 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 5555555555555555555555555444433
No 79
>KOG0994|consensus
Probab=96.92 E-value=3.3 Score=56.09 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHhhhhhhhhcchHHHHHHHHhhhH-------HHHHHhHHhHHHHHhhhhhhhhh
Q psy10988 1109 EQELGEMKNQMQTLEYEKQELLKQIQ-------EESIASNFLKNELQSLQDAFSVM 1157 (1857)
Q Consensus 1109 ~~~~~~~~~~~~~le~~k~~L~~e~e-------d~~i~~n~~~~~l~kkQ~~fd~~ 1157 (1857)
...+..|-+..++|.+.-+.+...+- |.+-..++..-+|+++|+.|+.+
T Consensus 1224 ~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l 1279 (1758)
T KOG0994|consen 1224 AEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGL 1279 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHH
Confidence 44566666666677666554433221 22224556667888899888877
No 80
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.86 E-value=0.00026 Score=91.34 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCchhhHHHH-------HhhhhhHhHHHHHHHHHhhcccCCCCCccccccc
Q psy10988 9 SPVTPSADNAMQTDPELPLPLEPCQTTGSDNSDEISEAY-------DMLQNEYDDLKQKFDEVVNRTKSDNGNQTEVPTT 81 (1857)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1857)
+|+.|+.+.....||.++-.++.+...- +.-|.+..-+ ..|+.+.+.|....+.+..+..+.+|.....++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~ 236 (713)
T PF05622_consen 158 QNVSLSQDSPEDLDSQSRRMYEELSRLV-AERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQH 236 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCcccchhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchH
Confidence 3455555554455666554444443322 2223333322 2344455555544444433333222222222222
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 82 STVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKL 129 (1857)
Q Consensus 82 ~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakL 129 (1857)
..++ ...+-.-++.+++++..+.............+.+++..|..+.
T Consensus 237 ~~~~-~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~ 283 (713)
T PF05622_consen 237 LSVE-LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQEN 283 (713)
T ss_dssp ------------------------------------------------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2233333444444444444444444444444444444333333
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.83 E-value=0.4 Score=57.47 Aligned_cols=205 Identities=21% Similarity=0.213 Sum_probs=106.9
Q ss_pred cccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hHHHHH--HHHH
Q psy10988 76 TEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID---------DEKSVS--YQLE 144 (1857)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~---------kEKeLs--keLn 144 (1857)
..+|..-.|..|+--+|.++-|.---.+|.+.+.+-+.-..++..++..=-+-+=.... +...+. +...
T Consensus 52 ~~~sl~~~~~A~~~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~a 131 (325)
T PF08317_consen 52 EPPSLEDYVVAGYCTVPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYA 131 (325)
T ss_pred CCCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 33444445667777899999999999999999999999999988888665444332222 333333 4444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10988 145 EKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGN 224 (1857)
Q Consensus 145 El~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~ 224 (1857)
-+..+..=|+=..+.+..=...|.+....+...... + ...+..+.+.+..+......+..++..++....+-|+
T Consensus 132 Rl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~-L-----~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~ 205 (325)
T PF08317_consen 132 RLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAK-L-----DKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES 205 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444433333333333333333333333333333333 2 2333334444444444444555555555544422222
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q psy10988 225 NDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKV 294 (1857)
Q Consensus 225 ~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekev 294 (1857)
.| +.++..++.++..+...+....+++..++.++..+...++.+...+..+..++.+++...
T Consensus 206 ~D--------~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 206 CD--------QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred cC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 244445555555555555555555555555555555444444444444444444444333
No 82
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.80 E-value=2.4 Score=55.98 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=64.7
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhH
Q psy10988 585 AEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINV 664 (1857)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~ 664 (1857)
......-.+|..+..+++.++.++...+.+. ......+..+-..|..++.. +..+ -++-...|.+|+..|-..
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~---~~ek~~~~~e~q~L~ekl~~---lek~-~re~qeri~~LE~ELr~l 431 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEERY---KQEKDRLESEVQNLKEKLMS---LEKS-SREDQERISELEKELRAL 431 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHHh-hhhhHHHHHHHHHHHHHH
Confidence 3344555677778888888888777777533 33444555555666666655 1111 112245666666666666
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhh
Q psy10988 665 EALVNQAQVEKQALDGKYEELKEKYEQMSEKF 696 (1857)
Q Consensus 665 E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~ 696 (1857)
-....+....-...++++-.+-.++..|--.+
T Consensus 432 ~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 432 SKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777767777777777777777777776533
No 83
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=96.79 E-value=0.0016 Score=57.64 Aligned_cols=44 Identities=25% Similarity=0.574 Sum_probs=35.0
Q ss_pred CchHHHHHHHhHhhccCCCCCChHHHHHHHHhhcCCCHHHHHhh
Q psy10988 1735 KVDKCLVTNMIVNFLTAPSRPSRHQALQILASVIDMTPQDRQKI 1778 (1857)
Q Consensus 1735 KVDK~LVkNLlIgyf~tP~a~~R~EvLrLIaSVL~~~~eE~eKl 1778 (1857)
.+|.--+||+++.||.++..+.|..++..||+||+||++|+.++
T Consensus 2 ~~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 2 GINLEYLKNVLLQFLESREPSEREQLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp -HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhh
Confidence 36777899999999999965679999999999999999999875
No 84
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.77 E-value=0.69 Score=60.74 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhh
Q psy10988 116 NELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAK 193 (1857)
Q Consensus 116 ~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~ 193 (1857)
..+..++..|.++++.-|+.|.+|...+..+...-+.+..++..++.+...|+.+...|..-... ++.-+. +..+..
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~-DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ-DKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 46778888888888888888888886666555554444555555555555555555444444444 333333 333333
Q ss_pred hHHHHHHHHHHHHH
Q psy10988 194 KDEVIEKLKAELES 207 (1857)
Q Consensus 194 ~ee~iEelk~ELEe 207 (1857)
+...-..+...|.+
T Consensus 500 E~~~R~~lEkQL~e 513 (697)
T PF09726_consen 500 ERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444444
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.77 E-value=3.3 Score=53.97 Aligned_cols=115 Identities=15% Similarity=0.249 Sum_probs=54.1
Q ss_pred CCchh-hHHHHHhhh--hhHhHHHHHHHHHhhcccCCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy10988 38 DNSDE-ISEAYDMLQ--NEYDDLKQKFDEVVNRTKSDNGNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTK 114 (1857)
Q Consensus 38 ~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK 114 (1857)
+++.+ |.+|+.-|- .-|+.|..-.+.++.|.++.. + +-.+.-.+..+...+..+......+..+
T Consensus 165 ~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~------~-------~~~~~~~~~~le~el~~l~~~~e~l~~~ 231 (650)
T TIGR03185 165 DRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE------L-------PSSILSEIEALEAELKEQSEKYEDLAQE 231 (650)
T ss_pred ccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc------c-------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 666654432 237777777777777654422 1 1112233344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10988 115 ENELHSRIEELEDKLQQKID-DE---KSVSYQLEEKAIEISQLTEHNRFLQEEMQ 165 (1857)
Q Consensus 115 ~~eL~~EIeeLEakLqelK~-kE---KeLskeLnEl~~eIr~lEnekk~lqErL~ 165 (1857)
+..+..++..++..+..++. .. ..+......+..+|..++....-...++.
T Consensus 232 i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 232 IAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333 10 11113344555556555555555555554
No 86
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.67 E-value=0.81 Score=56.85 Aligned_cols=169 Identities=20% Similarity=0.259 Sum_probs=108.2
Q ss_pred HHHhhhh-hHhHHHH--HHHHHhhcccCC-CCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH---H
Q psy10988 46 AYDMLQN-EYDDLKQ--KFDEVVNRTKSD-NGNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENE---L 118 (1857)
Q Consensus 46 ~~~~~~~-~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~e---L 118 (1857)
.|...|+ .|+-+-. -||-|+.-.++- .|....-|.---..-||+ ..|.+.+.++..+.++.+.+-+++.+ +
T Consensus 216 ~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~--~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~ 293 (622)
T COG5185 216 LKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFE--KFVHIINTDIANLKTQNDNLYEKIQEAMKI 293 (622)
T ss_pred hchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566 6666544 377777654432 233334455555666665 35777788888888888877777764 4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHH
Q psy10988 119 HSRIEELEDKLQQKIDDEKSVS-------YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAI 191 (1857)
Q Consensus 119 ~~EIeeLEakLqelK~kEKeLs-------keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql 191 (1857)
..-|..|+.+|..++.+...+. ....+..+.+..+..++...+++++.|..+...|.-.++. +.|.-+++
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k---q~Is~e~f 370 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK---QGISTEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---cCCCHHHH
Confidence 5567778888888887444333 5566777888888899999999999999999888888887 44554444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 192 AKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 192 ~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
..--.+-+++..+|+...-..+++...+
T Consensus 371 e~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 371 ELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4444444444444444433333333333
No 87
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.61 E-value=0.99 Score=55.09 Aligned_cols=179 Identities=12% Similarity=0.159 Sum_probs=137.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
...+++-+..+.+...+...+..+..+++.+..+-.++.+++-.+......+.++++.+-..-.++......++...-+|
T Consensus 112 ~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 112 QKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555567777777788888888888888888888889888888888888888887777777775555555555555
Q ss_pred hhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHH
Q psy10988 312 TDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQEN 391 (1857)
Q Consensus 312 qqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~ 391 (1857)
..+-.. ...-...+......+.....++.....-.......+..+-.++..+..+|..-.+ .+..-.+++..+..+.
T Consensus 192 ~~r~~~-ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e--~I~~re~~lq~lEt~q 268 (499)
T COG4372 192 KLRSAQ-IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAE--QIRERERQLQRLETAQ 268 (499)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHH
Confidence 544440 0033444555566677777788888888888888889999999999999999888 8888899999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHh
Q psy10988 392 KVLNEKVSELQTQLLSVEEALK 413 (1857)
Q Consensus 392 kvLks~Ie~LEgf~~svk~l~k 413 (1857)
.-|+..|..++.|--+-..+..
T Consensus 269 ~~leqeva~le~yyQ~y~~lr~ 290 (499)
T COG4372 269 ARLEQEVAQLEAYYQAYVRLRQ 290 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776655554
No 88
>KOG0963|consensus
Probab=96.56 E-value=4.2 Score=52.52 Aligned_cols=331 Identities=18% Similarity=0.212 Sum_probs=178.6
Q ss_pred hHHHHHhhhHHHHHHHHhHhHHHHHHHHHhhHHh------hhchhhhHHHHh---hhhhHHHHHHHHHhhhhhhhHHHHH
Q psy10988 910 DYEINAKVTELSIIMEKCKQYEDKCIELESTLDA------KLTDFSTKEQLN---KNKMAELSAMLESVQAENISIKQMN 980 (1857)
Q Consensus 910 k~~~~~e~~dl~~~~~~~k~~E~~~~e~~~k~~~------~~~d~~~~~~~~---~~e~~el~~~le~~e~~~~~~~q~~ 980 (1857)
--.++.|||.|+ +..+-.|..+...-.++-+ .+.-......+. -.|+.++...|+++..+.-......
T Consensus 68 lK~yQ~EiD~Lt---kRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq 144 (629)
T KOG0963|consen 68 LKSYQSEIDNLT---KRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQ 144 (629)
T ss_pred HHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhH
Confidence 445788999999 8899999998888878777 444444444444 4478888889998888666666666
Q ss_pred HHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH----HHHHhhhHHHHHHhhh
Q psy10988 981 EELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ----DKLRSYTHVENELGQY 1056 (1857)
Q Consensus 981 ~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q----~~~r~~~~~~~e~~q~ 1056 (1857)
.....+-..+.++...++...+-.....+ ..+....|...+-+......+.+++++.. .+++.+-...+++...
T Consensus 145 ~~v~~l~e~l~k~~~~~~~~ie~~a~~~e--~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~ 222 (629)
T KOG0963|consen 145 VTVRNLKERLRKLEQLLEIFIENAANETE--EKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDL 222 (629)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 77777777777766666655552221111 22333455555666666677777777766 5556666678888888
Q ss_pred hhhhhHHHHHHHHHH-HhhhhhhHHHHhh----hhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHHh
Q psy10988 1057 RSKVYELEQIQARLE-AERTQWIHEFEVK----TNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLK 1131 (1857)
Q Consensus 1057 r~k~ye~~~i~~~~e-~~~~~~lee~k~k----~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~~ 1131 (1857)
+++ |+.+......+ ---+.=++.+..+ -.+...+..++..+|.+..-+-. ..+....-.+-+.+..-.+|-.
T Consensus 223 ~s~-~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~--~~i~~~~~~L~~kd~~i~~L~~ 299 (629)
T KOG0963|consen 223 KSK-YDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKI--DDIDALGSVLNQKDSEIAQLSN 299 (629)
T ss_pred HHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC--CchHHHHHHHhHHHHHHHHHHH
Confidence 998 77764333333 1111112222222 12233333444444443321100 0000000111112333333333
Q ss_pred hhHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy10988 1132 QIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELA 1211 (1857)
Q Consensus 1132 e~ed~~i~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le~~l~ 1211 (1857)
+| +..+...-+.+.. |+..+..+-.++.+.-.++-.+.+.+-.- +-|++.-..|-
T Consensus 300 di--------------~~~~~S~~~e~e~------~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELs---- 354 (629)
T KOG0963|consen 300 DI--------------ERLEASLVEEREK------HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELS---- 354 (629)
T ss_pred HH--------------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHH----
Confidence 33 3333333344444 55555555555555544444444433322 45555444443
Q ss_pred hhhhhccccccC-CCCcchhhhhhhhhhhhhhh-HHHHHhhHhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhh
Q psy10988 1212 RRDATIATLNTT-GAPDLNASIENILKEKDATL-SEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRT 1283 (1857)
Q Consensus 1212 renk~l~~~~~~-e~~dl~~~~~~~l~e~~~~~-~El~k~~~~~e~e~~elq~ale~~e~~~~r~~~e~~q~~~ 1283 (1857)
.|..+--. .+.+.. + .+..+++ +=|..+-|.+..++..|..+...-.+.+-.+.+-+.++++
T Consensus 355 ----iLk~ief~~se~a~~-----~-~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~ 418 (629)
T KOG0963|consen 355 ----ILKAIEFGDSEEAND-----E-DETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEA 418 (629)
T ss_pred ----HHHHhhcCCcccccc-----c-ccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHH
Confidence 34322111 122211 1 1445566 5778888888888888888887555555555555555554
No 89
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.53 E-value=2.8 Score=50.15 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q psy10988 103 ALNEEVSQLKTKENELHSRIEELEDKLQQKID----DEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLD 175 (1857)
Q Consensus 103 eLneqi~eLqeK~~eL~~EIeeLEakLqelK~----kEKeLs---keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~ 175 (1857)
.|...+.+-..+++.+.++-+.|-.+|+..|. +|.++. -.|...+..-.+...-++-+.--++...+....+.
T Consensus 53 ~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lq 132 (305)
T PF14915_consen 53 TLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQ 132 (305)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHH
Confidence 34445555666777777777777777777776 444444 12222222222222223333333333334445555
Q ss_pred HhhhHHHHHHhh------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHH
Q psy10988 176 ENVTVEDIKKAN------ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELI 249 (1857)
Q Consensus 176 eEIe~~de~Kln------~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLq 249 (1857)
+.+.. +...+. ..++..++..+.+++.+|-...++++++---+ ..++-.+.+.+-.++++.
T Consensus 133 dkmn~-d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~l------------E~~QrdL~Qtq~q~KE~e 199 (305)
T PF14915_consen 133 DKMNS-DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLAL------------ESVQRDLSQTQCQIKEIE 199 (305)
T ss_pred HHhcc-hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 55555 444333 89999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHH
Q psy10988 250 EVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEAL 329 (1857)
Q Consensus 250 eqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeL 329 (1857)
.-+..-+..+...-.....++.++-+++++-.=+++.|....++..-.++-|-+++..+......+-
T Consensus 200 ~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~------------- 266 (305)
T PF14915_consen 200 HMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQ------------- 266 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999998888888777777766644433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 330 KKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEE 370 (1857)
Q Consensus 330 EkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIee 370 (1857)
.+...+.--+..+-..+-++.+-+++++-.++.+..+
T Consensus 267 ----ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEKaE 303 (305)
T PF14915_consen 267 ----AESEKQVLLLEERNKELINECNHLKERLYQYEKEKAE 303 (305)
T ss_pred ----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1222222233334445556666677777777666543
No 90
>KOG0980|consensus
Probab=96.51 E-value=5.4 Score=53.13 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDN 316 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E 316 (1857)
+.+-..+.+++-++.+++...+..++.++.....+...+.++..+...++.+.+....-++.++.++..+.-+.+
T Consensus 437 ~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~ 511 (980)
T KOG0980|consen 437 RQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELE 511 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444444444433333
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.48 E-value=0.23 Score=53.46 Aligned_cols=97 Identities=27% Similarity=0.339 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy10988 199 EKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVS 278 (1857)
Q Consensus 199 Eelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~s 278 (1857)
..++.+-+++...++.+...+ ..+......+..++..|..++..++.+|..+...+...+..++....
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~------------K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKV------------KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445556666666666666666 66666666666666777777777777776666666666666555533
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 279 GKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 279 dk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
.....+ .+...+..++..++.....+...
T Consensus 71 ~~~~~E----~l~rriq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 71 RKSNAE----QLNRRIQLLEEELEEAEKKLKET 99 (143)
T ss_pred HHHhHH----HHHhhHHHHHHHHHHHHHHHHHH
Confidence 332222 34444444444444444333333
No 92
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.47 E-value=0.79 Score=60.20 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN 187 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln 187 (1857)
.+-.++..++..+...++.--..|..|+.++......... ++.++.
T Consensus 467 ~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~-lEkQL~ 512 (697)
T PF09726_consen 467 QENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS-LEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4555556666666666666666666666665555544444 444444
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.46 E-value=0.83 Score=53.20 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=83.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10988 90 LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKD 169 (1857)
Q Consensus 90 ~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~Led 169 (1857)
+||++-..--.+..+.-+...+...+..+...+....+.++.++..=..+...+.++..++++++.++.-..+++...+.
T Consensus 1 ~m~~~~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 1 MMNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47887777888889999999999999988888888888888887733344466777777888888888888877777777
Q ss_pred HHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 170 KLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 170 K~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
+....+..- ++..+..++..++..+.+++.++.++..++
T Consensus 81 kl~~v~~~~-----------e~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 81 KLSAVKDER-----------ELRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHhccccHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664333332 334555555556666666555555555555
No 94
>KOG0995|consensus
Probab=96.44 E-value=4.7 Score=51.73 Aligned_cols=43 Identities=14% Similarity=0.350 Sum_probs=22.0
Q ss_pred cchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 92 PNVEDYNEKIRA-LNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 92 ~~~e~l~ekl~e-Lneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
||+..+.+.+.. ++....-+-.++..+.+.-.+|+..|++.+-
T Consensus 213 d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek 256 (581)
T KOG0995|consen 213 DNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREK 256 (581)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444332 3333333555666666666666666664443
No 95
>KOG0994|consensus
Probab=96.41 E-value=6.9 Score=53.27 Aligned_cols=73 Identities=21% Similarity=0.161 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHH
Q psy10988 326 IEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSE 400 (1857)
Q Consensus 326 LeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~ 400 (1857)
++..+.-++.....-...+++-+.++.+-..|=.+-...-.-|..+.. .+...++.|..+.+++.-|++.|..
T Consensus 1670 ~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~--~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1670 YELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLEL--EYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 333333333333333344444444444444443333333344444433 3444455555555555555555544
No 96
>KOG0976|consensus
Probab=96.34 E-value=6.2 Score=52.00 Aligned_cols=390 Identities=16% Similarity=0.213 Sum_probs=174.3
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhchHHHHHh
Q psy10988 757 NTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENIEASNHK 836 (1857)
Q Consensus 757 n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~e~e~~~~~~~e~~qkk 836 (1857)
-.+---|.+|..+|.-+++.+..-+-..-.+.-+--++|.+|..--.-|--.-.+|..+--+-|+|+..|++++++.+.
T Consensus 116 ~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~- 194 (1265)
T KOG0976|consen 116 LRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANR- 194 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHH-
Confidence 3344444555555555555444433333333333344444444333333333333444555555666667777766443
Q ss_pred HHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchhhHHHHHHHHHhH-HHhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy10988 837 IQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNL-ESVKQENTLVVENLQNLIAQKDYEINA 915 (1857)
Q Consensus 837 ikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~nre~e~~klrr~l-Ee~~~e~~~~~~~lq~~k~~~k~~~~~ 915 (1857)
+.+-++.+.+.+.++.|+-- + --.+++. .+-++|.. +++. .|+.+.+-|--++-- =+-|+.
T Consensus 195 ---en~~le~k~~k~~e~~~~nD----~------~sle~~~---~q~~tq~vl~ev~-QLss~~q~ltp~rk~-~s~i~E 256 (1265)
T KOG0976|consen 195 ---EKKALEEKLEKFKEDLIEKD----Q------KSLELHK---DQENTQKVLKEVM-QLSSQKQTLTPLRKT-CSMIEE 256 (1265)
T ss_pred ---HHHHHHHHHHHHHHHhhcch----H------HHHHHHH---HHHHHHHHHHHHH-HHHHhHhhhhhHhhh-hHHHHH
Confidence 33344555555555544432 0 0011111 11122221 1111 233333222222211 222333
Q ss_pred hhhHHHHHHHHhHhHHHHHHHHHh---hHHhhhchhhhHHHHhhhhhHHHHHHHHH-----------hhhhhhhHHHHHH
Q psy10988 916 KVTELSIIMEKCKQYEDKCIELES---TLDAKLTDFSTKEQLNKNKMAELSAMLES-----------VQAENISIKQMNE 981 (1857)
Q Consensus 916 e~~dl~~~~~~~k~~E~~~~e~~~---k~~~~~~d~~~~~~~~~~e~~el~~~le~-----------~e~~~~~~~q~~~ 981 (1857)
-+.+|. -..+-+|....+++. .+...++++......++.+..++....-- +.. -+.-+.+
T Consensus 257 ~d~~lq---~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~---enmkltr 330 (1265)
T KOG0976|consen 257 QDMDLQ---ASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHL---ENMKLTR 330 (1265)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---HHHHHHH
Confidence 333333 223333333333332 23334444444444444444333221111 111 2344556
Q ss_pred HHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhh
Q psy10988 982 ELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVY 1061 (1857)
Q Consensus 982 ~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q~~~r~~~~~~~e~~q~r~k~y 1061 (1857)
.+.++..-|.++++.++- |-...++|..+=+..+.+.+++-+.++---++.|-+.--..+...++...++++|
T Consensus 331 qkadirc~LlEarrk~eg-------fddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 331 QKADIRCALLEARRKAEG-------FDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666666666666644432 2233345555545454444444333332222333222222233333444455555
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHHhhhHHHHHHhH
Q psy10988 1062 ELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASN 1141 (1857)
Q Consensus 1062 e~~~i~~~~e~~~~~~lee~k~k~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i~~n 1141 (1857)
-.+.+-+--| +- -+.|+.+. +.++-=-+|-...++.+..+|---.+-+-...+--.+--++..+-+
T Consensus 404 ~~e~~~~dhe---------~~--kneL~~a~---ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir 469 (1265)
T KOG0976|consen 404 RLEQGKKDHE---------AA--KNELQEAL---EKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIR 469 (1265)
T ss_pred hhhhccchhH---------HH--HHHHHHHH---HHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence 5544433222 11 12333333 3333333455555655555443332333333333333333333667
Q ss_pred HhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q psy10988 1142 FLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKL 1206 (1857)
Q Consensus 1142 ~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~l 1206 (1857)
++-..|+|+.+ --+.|+.++++++.+-+-+.....++-+-...|-..+..+
T Consensus 470 ~l~~sle~qrK--------------Veqe~emlKaen~rqakkiefmkEeiQethldyR~els~l 520 (1265)
T KOG0976|consen 470 ALMDSLEKQRK--------------VEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSEL 520 (1265)
T ss_pred HHhhChhhhcc--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776543 1356888999999999988888888877777776655444
No 97
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.20 E-value=4.3 Score=49.05 Aligned_cols=230 Identities=18% Similarity=0.216 Sum_probs=116.5
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHH-HHHHHHHHHHHH
Q psy10988 78 VPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID----DEKSVS-YQLEEKAIEISQ 152 (1857)
Q Consensus 78 ~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~----kEKeLs-keLnEl~~eIr~ 152 (1857)
+|.---|..||--+|.++-|.---.+|...|.+=..-..++..++..=-+-+=...- ..+.+- .++. ++..=..
T Consensus 49 ~sl~~~v~A~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~-lvK~~aR 127 (312)
T smart00787 49 CSLDQYVVAGYCTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQ-LVKTFAR 127 (312)
T ss_pred CCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHH-HHHHHHH
Confidence 344445778999999999999999999999999999888888887643333221111 111111 1111 1122222
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy10988 153 LTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGA 230 (1857)
Q Consensus 153 lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~ 230 (1857)
+++...-+.=|++-++.=...|...++. ...-.. ...+..+.+.+..+......++.++..++....+-.+.|
T Consensus 128 l~ak~~WYeWR~kllegLk~~L~~~~~~-l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d---- 202 (312)
T smart00787 128 LEAKKMWYEWRMKLLEGLKEGLDENLEG-LKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD---- 202 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC----
Confidence 3333333443444433333333333333 111111 233344455555556666666666666555552212111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy10988 231 SDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETL----EASLKQKEQ 306 (1857)
Q Consensus 231 ~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveEl----E~~LEe~~e 306 (1857)
..++..++.++......+....+++..++.++..+...++.....+..+..++++.++.+.+. ...+..++.
T Consensus 203 ----~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~ 278 (312)
T smart00787 203 ----PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKE 278 (312)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 234555555555555555555555555555555555555555555555555554444433322 223444444
Q ss_pred Hhhhhhhcccc
Q psy10988 307 ELEGWTDNDNW 317 (1857)
Q Consensus 307 elE~Lqqe~E~ 317 (1857)
.+..|+....|
T Consensus 279 ~~~~Le~l~g~ 289 (312)
T smart00787 279 QLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHhCC
Confidence 44444443333
No 98
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=96.12 E-value=0.0079 Score=53.66 Aligned_cols=42 Identities=24% Similarity=0.539 Sum_probs=37.6
Q ss_pred chHHHHHHHhHhhccCCCCCChHHHHHHHHhhcCCCHHHHHhh
Q psy10988 1736 VDKCLVTNMIVNFLTAPSRPSRHQALQILASVIDMTPQDRQKI 1778 (1857)
Q Consensus 1736 VDK~LVkNLlIgyf~tP~a~~R~EvLrLIaSVL~~~~eE~eKl 1778 (1857)
+|---+||++++||.++... |..++..||+||.|+.+|..++
T Consensus 2 ~n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs~~e~~~~ 43 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLSPEEMQKL 43 (46)
T ss_pred ccHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCCHHHHHHH
Confidence 56677999999999999544 9999999999999999999876
No 99
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.09 E-value=0.74 Score=53.62 Aligned_cols=69 Identities=23% Similarity=0.426 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 193 KKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEE 272 (1857)
Q Consensus 193 ~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqE 272 (1857)
.++-.+..+.....++.+++..++.++ ......+..++.++..+..++++++.+|..++.++.+.+.-
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~------------e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAEL------------EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555666666666 55555555555555666666666666666665555555544
Q ss_pred H
Q psy10988 273 K 273 (1857)
Q Consensus 273 l 273 (1857)
+
T Consensus 82 l 82 (239)
T COG1579 82 L 82 (239)
T ss_pred H
Confidence 4
No 100
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.07 E-value=7.9 Score=50.61 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVE 220 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~~ 220 (1857)
+.+.++..++..+..+...+..++..++.....+...+.. ....+.. .=.......+.+..++..++..+.+.+..+.
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~-l~~~~~~-~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES-LEKKFRS-EGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777776666 5554441 1112222334555566666666666666666
Q ss_pred hhcCCCCCC
Q psy10988 221 EWGNNDAWG 229 (1857)
Q Consensus 221 ~~~~~~~~~ 229 (1857)
.|-++.+|-
T Consensus 287 ~l~~~~~p~ 295 (650)
T TIGR03185 287 ELAADPLPL 295 (650)
T ss_pred HHhcccCCH
Confidence 666666655
No 101
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.01 E-value=2 Score=51.65 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHH----HHHHHHHHHHH
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATL----QQENKVLNEKV 398 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~ak----q~E~kvLks~I 398 (1857)
..++..+..++......|...+..+..++.+...+...+..+..++.++.. .|....+.+... ..|+..|+..+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~--eI~e~~~~~~~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLA--EIAEAEKIREECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555554444 444444333322 23555666666
Q ss_pred HHHHhhHH
Q psy10988 399 SELQTQLL 406 (1857)
Q Consensus 399 e~LEgf~~ 406 (1857)
+.|+.+..
T Consensus 286 ~~Le~~~g 293 (325)
T PF08317_consen 286 DALEKLTG 293 (325)
T ss_pred HHHHHHHC
Confidence 66655543
No 102
>KOG0995|consensus
Probab=96.01 E-value=7.6 Score=49.94 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhH
Q psy10988 118 LHSRIEELEDKLQQKIDDEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 118 L~~EIeeLEakLqelK~kEKeLs---keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~ 180 (1857)
+-.+|+.++..-..+..+-+++. -....+...+..++.+.+.++.=+..++++...+...++.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~ 298 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55566666655555544222333 4555566666666666666666666666666666665555
No 103
>PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins. It is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The small GTPase Arf is localised to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane [].
Probab=96.00 E-value=0.0031 Score=47.00 Aligned_cols=18 Identities=39% Similarity=0.774 Sum_probs=16.4
Q ss_pred cCCCchHHHHHHHhHhhc
Q psy10988 1732 NGGKVDKCLVTNMIVNFL 1749 (1857)
Q Consensus 1732 ~egKVDK~LVkNLlIgyf 1749 (1857)
.++.|||+||+|+||+||
T Consensus 2 ~e~~VDk~lisN~~l~Fl 19 (19)
T PF10375_consen 2 SEDNVDKRLISNLLLSFL 19 (19)
T ss_pred chhhHHHHHHHHHHHhcC
Confidence 468899999999999997
No 104
>KOG1029|consensus
Probab=95.99 E-value=8.9 Score=50.59 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy10988 236 EELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDND 315 (1857)
Q Consensus 236 eeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~ 315 (1857)
....++..+...|..++.++.-+|-+.+-.+...+++++-....+.....++..+...+.++...+..+-.+...
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~----- 511 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQE----- 511 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-----
Confidence 344455666666666666666666666666666666665554444433333333333333322222222222222
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHH
Q psy10988 316 NWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQEN 391 (1857)
Q Consensus 316 E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~ 391 (1857)
+..++.........-..++..+......+..-...+++++.++..++++-.+ +++..+-.+..++..+
T Consensus 512 ------l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~--eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 512 ------LNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLN--EIDIFNNQLKELKEDV 579 (1118)
T ss_pred ------HHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHH
Confidence 2222222222222223333333333333333344455555555555555555 4444444444444443
No 105
>KOG0962|consensus
Probab=95.95 E-value=13 Score=51.97 Aligned_cols=103 Identities=24% Similarity=0.356 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH--hHHHHHHHHHHhhhhHHHhhH---
Q psy10988 596 VLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK--TLRNEIQELHAKLINVEALVN--- 669 (1857)
Q Consensus 596 ~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~--~l~~~i~el~~rl~~~E~~~~--- 669 (1857)
+--+-+++++..-...++.-+.==+.+..+-++.-.++.++++ +..+.-..++ +++.++++..+|+.+.+-.+-
T Consensus 185 KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~ 264 (1294)
T KOG0962|consen 185 KALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELE 264 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3345555666655555544333334556667777778888888 6666666666 888888888888877665544
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHhhhhhhh
Q psy10988 670 QAQVEKQALDGKYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 670 ~l~~~k~kle~~~~eLk~~~e~~e~k~e~ 698 (1857)
++....+.|+++-..++++|..+..+...
T Consensus 265 k~~~~~~~l~~e~~~l~~~~~~l~~~i~~ 293 (1294)
T KOG0962|consen 265 KLLKQVKLLDSEHKNLKKQISRLREKILK 293 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44567788888888888888888775543
No 106
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.92 E-value=5.7 Score=47.75 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy10988 239 EKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDN 316 (1857)
Q Consensus 239 e~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E 316 (1857)
..+..++..+......+.++|..+-++.+.....+..+.......+.+..+++.++.++...++.....+-.++..+.
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555566666666666666666777777777777777777766666666644444
No 107
>KOG0946|consensus
Probab=95.89 E-value=1.4 Score=57.73 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=21.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEVEEW 222 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~~~~ 222 (1857)
.+.+.....+...+..+..-+.+++.+...-.+.|
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~ 770 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESF 770 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55666666666666666666666665555544444
No 108
>KOG0946|consensus
Probab=95.86 E-value=2 Score=56.39 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 351 KTHSESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 351 QnE~EeLKsqLeele~EIeel~e 373 (1857)
..++...+++=+++-+.++...+
T Consensus 903 ~lki~s~kqeqee~~v~~~~~~~ 925 (970)
T KOG0946|consen 903 SLKIVSNKQEQEELLVLLADQKE 925 (970)
T ss_pred hhcccchhhhHHHHHHHHhhHHH
Confidence 33333344444444444443333
No 109
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.82 E-value=16 Score=52.02 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=39.3
Q ss_pred Cccccccccccccccc------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 74 NQTEVPTTSTVRNGFE------LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 74 ~~~~~~~~~~~~~~~~------~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
..+-|-...+.|+|.= --|-|-+.-..-..-...+..+...+..+..+++.+...+..+..
T Consensus 704 ~~~~v~~dG~~r~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~ 770 (1353)
T TIGR02680 704 AHTWIDVDGRFRLGVLRGAWAKPAAEYIGAAARERARLRRIAELDARLAAVDDELAELARELRALGA 770 (1353)
T ss_pred CCeeECCCCceeeeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666652 236677776666666667777777777777777777666666654
No 110
>PRK09039 hypothetical protein; Validated
Probab=95.80 E-value=0.82 Score=55.44 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSG 321 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~e 321 (1857)
..=.+=|.+.+...+++++.+..+|..+-.-+.........++..+..+...+..+++....++.-+.+...... .
T Consensus 38 ~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~----~ 113 (343)
T PRK09039 38 VVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGA----A 113 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc----h
Confidence 455566788888889999999999888888887777888888888888888888777777777666665544444 7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHH-HHHH
Q psy10988 322 NEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNE-KVSE 400 (1857)
Q Consensus 322 leeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks-~Ie~ 400 (1857)
.+.++..+..++...+....+....+..++.++..++.+|..++..|..... +......+++.+..+++..-. ++..
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~--~~~~~~~~i~~L~~~L~~a~~~~~~~ 191 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK--RDRESQAKIADLGRRLNVALAQRVQE 191 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888899999988888999998888888888888 777888888888777776653 3777
Q ss_pred HHhhHHHH
Q psy10988 401 LQTQLLSV 408 (1857)
Q Consensus 401 LEgf~~sv 408 (1857)
|..|-..+
T Consensus 192 l~~~~~~~ 199 (343)
T PRK09039 192 LNRYRSEF 199 (343)
T ss_pred HHHhHHHH
Confidence 77766544
No 111
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.68 E-value=17 Score=51.56 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=29.7
Q ss_pred chhHhhhhhcchhHHHHHHHhhHH--HHhchheecC
Q psy10988 434 TELNNLRAKCSEFEKTIVELKSQE--ELLKQALIDK 467 (1857)
Q Consensus 434 ~lLsDli~~v~eEy~~AVE~~~Le--e~L~~~VVd~ 467 (1857)
..|.++.++|++..+-+||. +|. ++|++|||.+
T Consensus 605 ~~l~df~e~v~~~~ra~IEa-AL~~~GLLDA~v~p~ 639 (1353)
T TIGR02680 605 WQLVDFADDVPADVRAGLEA-ALEAAGLLDAWVTAD 639 (1353)
T ss_pred hhheecCCCCCHHHHHHHHH-HHHHCCCcceeeCCC
Confidence 56899999999999999999 998 5789999887
No 112
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.67 E-value=3.5 Score=46.82 Aligned_cols=159 Identities=20% Similarity=0.287 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 1507 ELALRLQNLQEEKTMLLTEINDLRLNQN---TLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSA 1583 (1857)
Q Consensus 1507 klel~LkqlQ~E~eelq~E~~~lrEKe~---kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS 1583 (1857)
.+.-.+..++.+++++..|.+.|+.-.. ++....+.--+.|-.+=.+|..|+-.+..++...+.+...++.+++-..
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777755443 3444444445666666667777777777777777777777777755333
Q ss_pred hhhhHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy10988 1584 TAYTSASVRSNQQVEALTSQVK--SLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGEL 1661 (1857)
Q Consensus 1584 ~A~tsAs~ra~qQVEsLQ~Ql~--~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL 1661 (1857)
. ...+.+.++..|+.-+. .+ .+|+.++.+++..+..+......+.+|. +.+..+...++.++
T Consensus 96 ~----el~k~~~~l~~L~~L~~dknL-~eReeL~~kL~~~~~~l~~~~~ki~~Le-----------k~leL~~k~~~rql 159 (194)
T PF15619_consen 96 E----ELLKTKDELKHLKKLSEDKNL-AEREELQRKLSQLEQKLQEKEKKIQELE-----------KQLELENKSFRRQL 159 (194)
T ss_pred H----HHHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHHHHH
Confidence 3 11222222222222111 01 1477777777777777777777776666 34455555666666
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy10988 1662 NNSYAKNNELTQLISTLQHQ 1681 (1857)
Q Consensus 1662 ~e~~~k~ekLq~kv~sLQ~Q 1681 (1857)
..+..+...++.++..++..
T Consensus 160 ~~e~kK~~~~~~~~~~l~~e 179 (194)
T PF15619_consen 160 ASEKKKHKEAQEEVKSLQEE 179 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555444443
No 113
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.58 E-value=12 Score=48.97 Aligned_cols=189 Identities=22% Similarity=0.270 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHh
Q psy10988 98 NEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDEN 177 (1857)
Q Consensus 98 ~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eE 177 (1857)
......-..++..++.+++.+..++..++..+......-+.+...+.+.......++....+...=+.-|.+. ...
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~----e~n 395 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDA----EEN 395 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHH
Confidence 3445555666666777777777777777766666665333343444444444444444444333322222221 122
Q ss_pred hhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 178 VTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNH 255 (1857)
Q Consensus 178 Ie~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~ql 255 (1857)
|.. +..-+. ...+..+...|+..+..|.+ +++.++... .....+......+++.+...+-.+
T Consensus 396 i~k-L~~~v~~s~~rl~~L~~qWe~~R~pL~~---e~r~lk~~~------------~~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 396 IAK-LQALVEASEQRLVELAQQWEKHRAPLIE---EYRRLKEKA------------SNRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHH------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence 222 222222 55566666666666665554 555555555 333444444455555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 256 ETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 256 EkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
..+|...+.....+..++++.-.+.. -+.+-..+-++-++|.-++.++...
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~-----Rs~Yt~RIlEIv~NI~KQk~eI~KI 510 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVN-----RSAYTRRILEIVKNIRKQKEEIEKI 510 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66665555555555555555544422 2233444444444444444444433
No 114
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.57 E-value=14 Score=49.65 Aligned_cols=82 Identities=23% Similarity=0.296 Sum_probs=54.2
Q ss_pred HHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhhhhhhh-hhhchHHHHHhHHHhHHHH
Q psy10988 766 LEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEIS-YNENIEASNHKIQQLTQET 844 (1857)
Q Consensus 766 lE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~e~e~~-~~~~~e~~qkkikdL~~El 844 (1857)
+-.+|+-|+..++.++..-.|+...-+.||.++.-.-.... ....-++.++=+.|.||+ ..+|+-+-|+-|--|.+-|
T Consensus 678 l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~-~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQL 756 (769)
T PF05911_consen 678 LQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES-LQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQL 756 (769)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc-hhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577778888888888888877777777766654322111 000014555656689999 8889999888887776666
Q ss_pred HHHH
Q psy10988 845 DTLK 848 (1857)
Q Consensus 845 e~l~ 848 (1857)
-.|.
T Consensus 757 ksLa 760 (769)
T PF05911_consen 757 KSLA 760 (769)
T ss_pred HhcC
Confidence 5553
No 115
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.38 E-value=17 Score=49.46 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=11.2
Q ss_pred CCCCCC-cccccCCCCch
Q psy10988 25 LPLPLE-PCQTTGSDNSD 41 (1857)
Q Consensus 25 ~~~~~~-~~~~~~~~~~~ 41 (1857)
.+.|+- -|..|||.-|.
T Consensus 23 f~~gi~lI~G~nGsGKSS 40 (908)
T COG0419 23 FDSGIFLIVGPNGAGKSS 40 (908)
T ss_pred CCCCeEEEECCCCCcHHH
Confidence 445543 47888988774
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.37 E-value=1.2 Score=48.31 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy10988 236 EELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDND 315 (1857)
Q Consensus 236 eeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~ 315 (1857)
..+...+.+...+...+..++.++...+..+..+....++-...+..+.++++.+..+...+...+..++.+.+.|.+..
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777777777777777777777777777777777777777777777777777777777777776666
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 316 NWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 316 E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
. ..++++..++.-...+...|...... ...-....+..+..+..++.
T Consensus 90 q----~~q~kv~eLE~~~~~~~~~l~~~E~e---k~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 90 Q----KKQEKVSELESLNSSLENLLQEKEQE---KVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred H----HHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 6 66666666666666666666655555 22233344444444444443
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.34 E-value=5.4 Score=49.89 Aligned_cols=199 Identities=15% Similarity=0.232 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 196 EVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEA 275 (1857)
Q Consensus 196 e~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~ 275 (1857)
..+..+..+|+.+++.+.....++ ..+...+-.+..++..+..++-.....+..++.+|......++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~------------~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQR------------AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 334455555555555555555555 55555555556666666666666666666666666666666666
Q ss_pred hHhhhHHHHHHHHHHHHHHHHH---------HHHHHHH-HHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 276 EVSGKLEQDAMVKELKSKVETL---------EASLKQK-EQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQES 345 (1857)
Q Consensus 276 l~sdk~~leaELqeLekeveEl---------E~~LEe~-~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEeler 345 (1857)
+.......+.-|..+-.-+... ...-+-. -..+--+...++-+.-+.-..|...-..+...+..+...+.
T Consensus 106 l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~ 185 (420)
T COG4942 106 LEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQA 185 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555533333333322222110 0000000 00000001111100001111111222222222222222222
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy10988 346 TLA----KLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSV 408 (1857)
Q Consensus 346 KLE----eLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~sv 408 (1857)
++. ....+...+..-+.+..+-...+.. .+.....++..++..-..|+..|..++.....+
T Consensus 186 ~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~--~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~ 250 (420)
T COG4942 186 ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNS--ELSADQKKLEELRANESRLKNEIASAEAAAAKA 250 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 222 3333333333334444444444444 566667788888888888888888887555433
No 118
>KOG0980|consensus
Probab=95.32 E-value=5.7 Score=52.94 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy10988 192 AKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLI---AKLEADLTR 268 (1857)
Q Consensus 192 ~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeI---a~L~~ql~~ 268 (1857)
......+...+..+...+-++.+.+-.. +....+-++++.+...+.....++++=. ..+.+....
T Consensus 354 ~ear~~~~q~~~ql~~le~~~~e~q~~~------------qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~ 421 (980)
T KOG0980|consen 354 EEARRRIEQYENQLLALEGELQEQQREA------------QENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALA 421 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344555555555555555555555555 5555666677777777777777776655 777888888
Q ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 269 VKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 269 lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
.+.+++.+..-.+.++++...+..++.++.+.++-.+......
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~ 464 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDV 464 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8888888888888888888888888888877777666665544
No 119
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.20 E-value=1.3 Score=47.79 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 234 VKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEAS 300 (1857)
Q Consensus 234 ~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~ 300 (1857)
++.+.+.+......+..++-.++.....++..|..+...+..+..++......+...+..+......
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444455555555555555555555555555555555555555555555555555555555443
No 120
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.92 E-value=12 Score=45.17 Aligned_cols=136 Identities=13% Similarity=0.254 Sum_probs=69.1
Q ss_pred hcCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 222 WGNNDAWGASDD-VKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEAS 300 (1857)
Q Consensus 222 ~~~~~~~~~~d~-~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~ 300 (1857)
|+..|-|....+ +-..+-.++....-|-++++.++.++..+.+.+-...-.+.--.--.......++.-.-.+.+++.-
T Consensus 122 qr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m 201 (305)
T PF14915_consen 122 QRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHM 201 (305)
T ss_pred HHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544322 2223334455555566666666666666555544433332222222222233333333333444444
Q ss_pred HHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 301 LKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQL 361 (1857)
Q Consensus 301 LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqL 361 (1857)
...-+..+.......+ -++++|..+..+---+.++|++...+.+.+..-+.-++.+.
T Consensus 202 ~qne~~kv~k~~~Kqe----s~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 202 YQNEQDKVNKYIGKQE----SLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444444445555555 55667777777777777777777776666665555555554
No 121
>PRK11281 hypothetical protein; Provisional
Probab=94.89 E-value=5.9 Score=54.84 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=30.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccccccCCCCCCCCcCccchhHhhhh
Q psy10988 376 SWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRA 441 (1857)
Q Consensus 376 ~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~ 441 (1857)
.+.....+++.+..+....+..++.+..-...++.=+ .|.+|.+ +|+.++.
T Consensus 293 ~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi--------------~~l~~s~-~l~~~l~ 343 (1113)
T PRK11281 293 RLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI--------------SVLKGSL-LLSRILY 343 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhcccH-HHHHHHH
Confidence 4555555666666666666666666544444444433 3666666 7777766
No 122
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.88 E-value=9.1 Score=43.68 Aligned_cols=163 Identities=20% Similarity=0.268 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHH------HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy10988 1513 QNLQEEKTMLLTEINDLRLNQNTLYNENERLK------QHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAY 1586 (1857)
Q Consensus 1513 kqlQ~E~eelq~E~~~lrEKe~kl~~ELERLR------~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~ 1586 (1857)
+.|..++..++..+..+.+-..++..+++-|| +|+++.-+ ..++...+|+.-+.
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK-------~l~eEledLk~~~~------------- 77 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK-------ALEEELEDLKTLAK------------- 77 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------------
Confidence 34566666666666667666677777777776 33333333 34444444444444
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q psy10988 1587 TSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYA 1666 (1857)
Q Consensus 1587 tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~ 1666 (1857)
.++.+.-.+.++....++......+.+..|| ++--++..+.+.++....+...
T Consensus 78 -------------------~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq--------een~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 78 -------------------SLEEENRSLLAQARQLEKEQQSLVAEIETLQ--------EENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHhhhhHHHHHHHHHH
Confidence 4444444445555555555556566666666 4445566677777777765555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1667 KNNELTQLISTLQHQLQEARESLSA----AGRLSDQLNQKSQTIQELTEKVNQLMEELNK 1722 (1857)
Q Consensus 1667 k~ekLq~kv~sLQ~QLeEAee~L~a----AsRLs~QLrkKq~qIeeLkeeaeil~E~L~k 1722 (1857)
+...|+.+|..|..=+-.-.+.+.. +..+..-+..-...+.+||-++..++++|..
T Consensus 131 ~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 131 EKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666665555433333333221 2223333344455566666666666666544
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.80 E-value=16 Score=46.02 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSG 321 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~e 321 (1857)
..+..+....+....+.|+..+..+..-+.++...... +..+...+...+.+-.+.+..++..+..-+++.+ +
T Consensus 156 ~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~e---q~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~----e 228 (420)
T COG4942 156 NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE---QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLE----E 228 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 45555555555666666666666666655555544332 2222233333333333333333333333333333 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 322 NEQDIEALKKENEEIKEKLAKQESTLA 348 (1857)
Q Consensus 322 leeqLeeLEkEIEELeeeLEelerKLE 348 (1857)
+...-..+..+|..+.......++.-+
T Consensus 229 L~~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 229 LRANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555553333333
No 124
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.74 E-value=9.9 Score=43.41 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKEL 290 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeL 290 (1857)
.+++..+-.+..+...|..+-.+++++.-.+-..+..+..+...+..++..+.....++
T Consensus 70 edLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 70 EDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444333333333333
No 125
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.72 E-value=13 Score=44.98 Aligned_cols=156 Identities=18% Similarity=0.237 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh-----HH-HH--hh---------------hHHHHHHH
Q psy10988 145 EKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN-----ES-AI--AK---------------KDEVIEKL 201 (1857)
Q Consensus 145 El~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln-----~e-ql--~~---------------~ee~iEel 201 (1857)
.+..+=+.+......+...+....+....|..++.. ...-+. .. .- .. ----++.+
T Consensus 87 sLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~-kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 87 SLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM-KDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 333333444555555666666666666666666655 333333 00 00 00 00123555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy10988 202 KAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKL 281 (1857)
Q Consensus 202 k~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~ 281 (1857)
..++..++.+-..++++. ..+..+.......-..| +..+-++++....++..+..++..-..+..
T Consensus 166 q~Klk~LEeEN~~LR~Ea------------~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEA------------SQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 556666666656666665 45544444443333333 333445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy10988 282 EQDAMVKELKSKVETLEASLKQKEQELEGWTDNDN 316 (1857)
Q Consensus 282 ~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E 316 (1857)
++..++..+-..+-.+..++...-.+-+.+...+.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55555555555555555555555444444444333
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.52 E-value=6.1 Score=44.97 Aligned_cols=165 Identities=22% Similarity=0.272 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
.+++..++.++.|..-|.......++-|..+...-..+-+-+....+++..+...+..........+..+.....++..+
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888888888888888888888888888888888888888888888888888888877777777766
Q ss_pred hhccccCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHH
Q psy10988 312 TDNDNWGSSGNEQDIE--ALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQ 389 (1857)
Q Consensus 312 qqe~E~~~~eleeqLe--eLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~ 389 (1857)
..... .+++-.. ++ .+..++..+|+....++.+....+..+..++.-.... ... ++...+.+..+.+.
T Consensus 102 ~~~l~----~L~~L~~dknL-~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~---~~r--ql~~e~kK~~~~~~ 171 (194)
T PF15619_consen 102 KDELK----HLKKLSEDKNL-AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKS---FRR--QLASEKKKHKEAQE 171 (194)
T ss_pred HHHHH----HHHHHHHcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH--HHHHHHHHHHHHHH
Confidence 54444 2222111 00 1234455555555555555555554554444333322 223 56667777777777
Q ss_pred HHHHHHHHHHHHHhhHH
Q psy10988 390 ENKVLNEKVSELQTQLL 406 (1857)
Q Consensus 390 E~kvLks~Ie~LEgf~~ 406 (1857)
++..+...|..|...+.
T Consensus 172 ~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777655543
No 127
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.42 E-value=2.4 Score=46.03 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHH
Q psy10988 250 EVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEAL 329 (1857)
Q Consensus 250 eqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeL 329 (1857)
++.+.+..++-..+...+.++.....+..++.-....+..+....+...+.+.++..+++.++...+ .+..++..+
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~----~L~~EL~~l 78 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN----QLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3445555555555666666666655555555555555555555555555555555555555555555 555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 330 KKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 330 EkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e 373 (1857)
..+...+...+...+.+++.+......+..-|..++.+...+.+
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e 122 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665555555555555555555333333
No 128
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=3.3 Score=49.12 Aligned_cols=167 Identities=25% Similarity=0.410 Sum_probs=113.3
Q ss_pred HHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhh-
Q psy10988 620 EEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN- 698 (1857)
Q Consensus 620 e~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~- 698 (1857)
.++..+..++.++..+|++ |.++|.++..+..+..+.+.++..+-++|++++.+|+++|-+-...|.+
T Consensus 38 s~l~~~~~~~~~~q~ei~~-----------L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 38 SKLSELQKEKKNIQNEIES-----------LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666 6777888888888899999999999999999999999999998885544
Q ss_pred -----ccCCCccchhhhhhhhhhhHHHHHHHHh-------hhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhH
Q psy10988 699 -----QTGKDSVDIDTLIKNLQSKKEELCRLLD-------EKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDL 766 (1857)
Q Consensus 699 -----~~~~ek~~~~~~ik~l~~~~e~i~kl~k-------Ekk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~kl 766 (1857)
.+|.-..-+|-. =+=.+.-|=|.|+.- .++-|+.-+..+.. |..-+.--+||.++|-.+..++
T Consensus 107 aRAmq~nG~~t~Yidvi-l~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~----Le~kq~~l~~~~e~l~al~~e~ 181 (265)
T COG3883 107 ARAMQVNGTATSYIDVI-LNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKS----LEEKQAALEDKLETLVALQNEL 181 (265)
T ss_pred HHHHHHcCChhHHHHHH-HccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334333323322 111223444444432 23333333222222 2222333567888999999999
Q ss_pred HHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHH
Q psy10988 767 EAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQ 802 (1857)
Q Consensus 767 E~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~q 802 (1857)
|.++++|+...-..+...+.+--...+..++...++
T Consensus 182 e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 182 ETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999998888888888888888888877776
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.03 E-value=3.5 Score=49.97 Aligned_cols=288 Identities=20% Similarity=0.279 Sum_probs=168.8
Q ss_pred hhhHHHHHhhhhhHhHHHHHHHHHhhcccCCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 41 DEISEAYDMLQNEYDDLKQKFDEVVNRTKSDNGNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHS 120 (1857)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~ 120 (1857)
|...-.++-|+..|..|+.+..++... -...|.+.-.|++ +.-.|.+-+.+.++.-..|..++..++.++.+++.
T Consensus 26 DqyKlMAEqLqer~q~LKkk~~el~~~-~~~~~d~~~~~~~----~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 26 DQYKLMAEQLQERYQALKKKYRELIQE-AAGFGDPSIPPEK----ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-hcccCCccCCccc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555566677777888888877766532 2223333333333 55567777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHH
Q psy10988 121 RIEELEDKLQQKIDDEKSVS--YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVI 198 (1857)
Q Consensus 121 EIeeLEakLqelK~kEKeLs--keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~i 198 (1857)
++--|-.++...+.....+. ...++-..-|.++ .-+..++..|+.-...+.++ .
T Consensus 101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL----Ek~~~q~~qLe~d~qs~lDE--------------------k 156 (319)
T PF09789_consen 101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL----EKLREQIEQLERDLQSLLDE--------------------K 156 (319)
T ss_pred hHHHHHHHHHhhhhhhccccccccchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------------------H
Confidence 98888888888877111222 2122222222222 12222233333333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hH
Q psy10988 199 EKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEA-EV 277 (1857)
Q Consensus 199 Eelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~-l~ 277 (1857)
+++..+.+.+...+..+..++ |-.-|.....--.+|.+--|..=|.+++.+++.+...+...+.+.+.-++. ..
T Consensus 157 eEl~~ERD~yk~K~~RLN~EL-----n~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~ 231 (319)
T PF09789_consen 157 EELVTERDAYKCKAHRLNHEL-----NYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRK 231 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 336666666666666666666 222222233334678889999999999999999999999999999988874 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 278 SGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNW-GSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSES 356 (1857)
Q Consensus 278 sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~-~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~Ee 356 (1857)
+.+.++-.- -.+-...+. ...+-.+=|...... +....-..+..+..---.+-+.+.+.+--+..-+.-=..
T Consensus 232 ~~~~k~~~~---~~~~~~~v~----s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~Hqr~tNkI 304 (319)
T PF09789_consen 232 KGIIKLGNS---ASSNLTGVM----SAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQHQRKTNKI 304 (319)
T ss_pred ccccccCCC---CCCcccccc----cHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222211100 000000000 011111111111110 011334567777777777888888888888887777788
Q ss_pred HHHHHHHHHHHHh
Q psy10988 357 LQKQLLEKEMELE 369 (1857)
Q Consensus 357 LKsqLeele~EIe 369 (1857)
|-.++.+++..+.
T Consensus 305 Lg~rv~ELE~kl~ 317 (319)
T PF09789_consen 305 LGNRVAELEKKLK 317 (319)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887765
No 130
>KOG1003|consensus
Probab=93.79 E-value=16 Score=42.01 Aligned_cols=112 Identities=25% Similarity=0.266 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC
Q psy10988 249 IEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAM-------VKELKSKVETLEASLKQKEQELEGWTDNDNWGSSG 321 (1857)
Q Consensus 249 qeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaE-------LqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~e 321 (1857)
.+++-.....++.+..++.+...+.+.-.+.+..+..+ +..|....+.+....+.....+..+..++. +
T Consensus 80 drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk----E 155 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK----E 155 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----h
Confidence 34444455556666666666666665555555555554 444444444444444444444444544444 4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 322 NEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEK 364 (1857)
Q Consensus 322 leeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeel 364 (1857)
....-...+..+..+...++++..++...+.++..++..|...
T Consensus 156 aE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 156 AETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred hhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555544443
No 131
>PRK09039 hypothetical protein; Validated
Probab=93.55 E-value=3 Score=50.85 Aligned_cols=11 Identities=0% Similarity=-0.161 Sum_probs=6.4
Q ss_pred cchhHHHHHHH
Q psy10988 443 CSEFEKTIVEL 453 (1857)
Q Consensus 443 v~eEy~~AVE~ 453 (1857)
+.|+++..+..
T Consensus 235 L~~~~~~~L~~ 245 (343)
T PRK09039 235 LNPEGQAEIAK 245 (343)
T ss_pred cCHHHHHHHHH
Confidence 45666665555
No 132
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.37 E-value=37 Score=44.94 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy10988 235 KEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDN 314 (1857)
Q Consensus 235 KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe 314 (1857)
+.++-....++.-|+-++..-++.|..+...+..-..-...++.-...+...|+....+..-+.+.+.....-+......
T Consensus 232 ~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~t 311 (786)
T PF05483_consen 232 KKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESEST 311 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666666666666666666666666665555555567777777777777777777666665555
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 315 DNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKT 352 (1857)
Q Consensus 315 ~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQn 352 (1857)
.. .+...++...+.+..+....+.....+...+.
T Consensus 312 q~----~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~ 345 (786)
T PF05483_consen 312 QK----ALEEDLQQATKTLIQLTEEKEAQMEELNKAKA 345 (786)
T ss_pred HH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55 55556665555555555555444444443333
No 133
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.09 E-value=20 Score=45.06 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGA------SDDVKEELEKLVVEKQELIEVIQNHETLIAK 261 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~------~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~ 261 (1857)
...+......+...+.++...+..++.+...+ +..+.+.. .+.++..+..++.+...+...+..-.-.+-.
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l---~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~ 279 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQL---GGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIA 279 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 34455556666666666666666666666655 22112211 1234444444455555555444444444445
Q ss_pred HHHHHHHHHHHHHH
Q psy10988 262 LEADLTRVKEEKEA 275 (1857)
Q Consensus 262 L~~ql~~lkqElE~ 275 (1857)
++.++..++..+..
T Consensus 280 l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 280 TKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544433
No 134
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.04 E-value=27 Score=42.53 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10988 95 EDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID--------DEKSVSYQLEEKAIEISQLTEHNRFL 160 (1857)
Q Consensus 95 e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~--------kEKeLskeLnEl~~eIr~lEnekk~l 160 (1857)
..+...+..|..+...++............|...+..++. -|.+=.+-.|.+..+|..+..++..+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888888888888888887 11111144455555666655555544
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.00 E-value=24 Score=42.65 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCchHHHHHHH
Q psy10988 1669 NELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN----NGGKVDKCLVTNM 1744 (1857)
Q Consensus 1669 ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~----~egKVDK~LVkNL 1744 (1857)
..++..+..++.+++.++..+.. ............+..++.+...++..+..++..+.... -+|.|-...+ .
T Consensus 213 ~~~~~~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~~~~~--~ 288 (423)
T TIGR01843 213 GRLEAELEVLKRQIDELQLERQQ--IEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTVQSLKV--H 288 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEEEEEEE--E
Confidence 34444444555555544444321 12233344455667777777777777777777777654 6777754321 1
Q ss_pred hHhhccCC
Q psy10988 1745 IVNFLTAP 1752 (1857)
Q Consensus 1745 lIgyf~tP 1752 (1857)
-.|=+.+|
T Consensus 289 ~~G~~v~~ 296 (423)
T TIGR01843 289 TVGGVVQP 296 (423)
T ss_pred ccCceecC
Confidence 24555555
No 136
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.99 E-value=22 Score=41.20 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy10988 263 EADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAK 342 (1857)
Q Consensus 263 ~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEe 342 (1857)
..........+..+..++....+.+..++.-+..+-++.+..++.++++..+.+ .+.+.+.++..++..
T Consensus 61 ~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE-----------~Lkk~~~ey~~~l~~ 129 (207)
T PF05010_consen 61 QKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEE-----------TLKKCIEEYEERLKK 129 (207)
T ss_pred HhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHH
Confidence 334444555566666666667777777777777777777777777777766665 333555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 343 QESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQ 404 (1857)
Q Consensus 343 lerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf 404 (1857)
...++..++. ....+|..-..+|..++. .....+.++++..+..+-.+.+|+.-
T Consensus 130 ~eqry~aLK~---hAeekL~~ANeei~~v~~-----~~~~e~~aLqa~lkk~e~~~~SLe~~ 183 (207)
T PF05010_consen 130 EEQRYQALKA---HAEEKLEKANEEIAQVRS-----KHQAELLALQASLKKEEMKVQSLEES 183 (207)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665 334666666666666655 22333444445444444444444433
No 137
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.97 E-value=28 Score=42.44 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHH
Q psy10988 157 NRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKE 236 (1857)
Q Consensus 157 kk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~Ke 236 (1857)
...++.+++.|++....|..+... +........- ....-+.....+|..+...+..+-.++ ..+.+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~-L~~et~~~Ee-kEqqLv~dcv~QL~~An~qia~LseEL------------a~k~E 227 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQ-LKTETDTYEE-KEQQLVLDCVKQLSEANQQIASLSEEL------------ARKTE 227 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhHHHhhccH-HHHHHHHHHHHHhhhcchhHHHHHHHH------------HHHHH
Confidence 345555555555555555555444 2221110000 011112222344444444444444444 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10988 237 ELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTD 313 (1857)
Q Consensus 237 eLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqq 313 (1857)
+....+.++-.|..++..+++++..+-.....+.+.+.........+.+++.+|..++.+..+-+.+.++++..+..
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 55556777777777777777777777777778888887777778888888999999999998888888888776643
No 138
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.93 E-value=41 Score=44.28 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHH
Q psy10988 259 IAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKE 338 (1857)
Q Consensus 259 Ia~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELee 338 (1857)
+..++........+..+....+..++.+++.+..++...+.....+..+++.+.+... -+..-.+|-++-+.|..=+.
T Consensus 428 ~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~--Rs~Yt~RIlEIv~NI~KQk~ 505 (594)
T PF05667_consen 428 YRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN--RSAYTRRILEIVKNIRKQKE 505 (594)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHhHHHHHH
Confidence 3333333333334444444455555566666666666666666666666777766655 23444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 339 KLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 339 eLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
.|..+-..-..++.+++.+..+|...-.-..
T Consensus 506 eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~d 536 (594)
T PF05667_consen 506 EIEKILSDTRELQKEINSLTGKLDRTFTVTD 536 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555556666665555554443333
No 139
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.79 E-value=6.5 Score=49.43 Aligned_cols=126 Identities=26% Similarity=0.409 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh---hhhhccCCCccchhhhhhhhhhhHHHHHHHH
Q psy10988 649 TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE---KFENQTGKDSVDIDTLIKNLQSKKEELCRLL 725 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~---k~e~~~~~ek~~~~~~ik~l~~~~e~i~kl~ 725 (1857)
.|+++|+||.-+.-...- +=+-+..||+.|++|=. ++-. +|-++++.++||++.-..
T Consensus 342 yLe~kvkeLQ~k~~kQqv-----------fvDiinkLk~niEeLIedKY~viL----EKnd~~k~lqnLqe~la~----- 401 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQV-----------FVDIINKLKENIEELIEDKYRVIL----EKNDIEKTLQNLQEALAN----- 401 (527)
T ss_pred HHHHHHHHHHHHhhhhhH-----------HHHHHHHHHHHHHHHHHhHhHhhh----hhhhHHHHHHHHHHHHHH-----
Confidence 677777777666544433 33567788888888877 7778 899999999999974333
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhhhh---hhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhh
Q psy10988 726 DEKNTLDNIKVEKENLEIQLDNLNTNY---QDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFE 795 (1857)
Q Consensus 726 kEkk~l~e~~~~~~~~~~~ld~l~~~e---edK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E 795 (1857)
=+|+|+|-+.+|+-++-.+.-+.+|| +++.-+-++.|+|--.+--+|+.+|-++.-...-|-..|..+|
T Consensus 402 -tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelE 473 (527)
T PF15066_consen 402 -TQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELE 473 (527)
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35567777777777887777777765 5677777888998888888888888877766666666666666
No 140
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.73 E-value=23 Score=40.94 Aligned_cols=124 Identities=22% Similarity=0.249 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC
Q psy10988 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSS 320 (1857)
Q Consensus 241 lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~ 320 (1857)
...++..+....-++..++..++..+..+-.++++...-+..+...=..|++.+.++..++....+.+..|..+-+
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe---- 142 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE---- 142 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3556666666777777778888888888888888888888888888888889999999999999999999877666
Q ss_pred CcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 321 GNEQDIEALKKENEEIKEK----LAKQESTLAKLKTHSESLQKQLLEKEMELEEW 371 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeee----LEelerKLEeLQnE~EeLKsqLeele~EIeel 371 (1857)
++|..-+.+|..+... +..++..+...+-....|..+|.....+.+++
T Consensus 143 ---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 143 ---EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred ---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555443 23333333333344444444444444444433
No 141
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.32 E-value=28 Score=40.83 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 197 VIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAE 276 (1857)
Q Consensus 197 ~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l 276 (1857)
.-..+...+..+...+.++.+.....|.++..+.+.++...+..++.=+.+++.+-|...... .+..+.....-+.++
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~--Ae~El~~A~~LL~~v 165 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQN--AEDELKEAEDLLSRV 165 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHH
Confidence 334455666667777777777777778888888888888888888777777766643333322 233333333333333
Q ss_pred HhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 277 VSGKLEQDAMV----KELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 277 ~sdk~~leaEL----qeLekeveElE~~LEe~~eelE~L 311 (1857)
.........+. ..+...+..+...+.+++.-+...
T Consensus 166 ~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA 204 (264)
T PF06008_consen 166 QKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEA 204 (264)
T ss_pred HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322222 223333344444444444444444
No 142
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.22 E-value=34 Score=42.36 Aligned_cols=119 Identities=13% Similarity=0.246 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10988 1592 RSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNEL 1671 (1857)
Q Consensus 1592 ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekL 1671 (1857)
..+..+..|..++..+..++..+..+...---.+......+.+|...|.. ++.++...+.. ....+
T Consensus 251 ~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~-----------e~~~~~~~~~~---~~~~~ 316 (444)
T TIGR03017 251 IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA-----------EIKKVTSSVGT---NSRIL 316 (444)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH---HHHHH
Confidence 34566788888888888888888777666666666666666666643321 11122111111 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 1672 TQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN 1731 (1857)
Q Consensus 1672 q~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~ 1731 (1857)
...+..|..++++.+..+. .+.....++..|+.+++.....++.+..|+.+..
T Consensus 317 ~~~~~~l~~~l~~~~~~~~-------~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 317 KQREAELREALENQKAKVL-------ELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544443322 2334466677899999999999999999998775
No 143
>PF13166 AAA_13: AAA domain
Probab=92.21 E-value=16 Score=47.84 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=31.1
Q ss_pred cCCCCCCCCC--cccccCCC-CchhhHHHHHh-hhhhHhHHHHHHHHHhhcc
Q psy10988 21 TDPELPLPLE--PCQTTGSD-NSDEISEAYDM-LQNEYDDLKQKFDEVVNRT 68 (1857)
Q Consensus 21 ~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 68 (1857)
..|.+|+|-+ .|...|.+ -+.+..+.|.- +..+|.++.+..+......
T Consensus 245 v~~G~~~~~~~~~CpfC~q~~l~~~~~~~l~~~f~~~~~~~~~~l~~~~~~~ 296 (712)
T PF13166_consen 245 VEQGLELHKEGDTCPFCQQEPLSEERKERLEKYFDEEYEKLIEELEKAIKKL 296 (712)
T ss_pred HHcCccCCCCCCcCCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666544 59999996 77777777763 5667777666666544433
No 144
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.16 E-value=24 Score=44.33 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCchHHHHHHHhHh-hccCC
Q psy10988 1698 QLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN----NGGKVDKCLVTNMIVN-FLTAP 1752 (1857)
Q Consensus 1698 QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~----~egKVDK~LVkNLlIg-yf~tP 1752 (1857)
.......++..++.+...++..+..++.++.... -+|-|. ..+...| -+.+|
T Consensus 285 ~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~---~~~~~~G~~~V~~ 341 (457)
T TIGR01000 285 QLAKVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVLH---LNPETKGIKYVPK 341 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEEE---ecccCCCCcEeCC
Confidence 3446677888888888888888888888887775 888886 2245566 35566
No 145
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.74 E-value=8.2 Score=41.05 Aligned_cols=68 Identities=18% Similarity=0.328 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHH
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSE 400 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~ 400 (1857)
.++.++..+...+..+....+.....+...... ...+-..++.+ +.....+++++...+++|=+.|+.
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~qk~~le~e---------~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAELEESEAS---WEEQKEQLEKE---------LSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555555444332 22222222222 333444666777777777666654
No 146
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.72 E-value=62 Score=43.56 Aligned_cols=168 Identities=20% Similarity=0.219 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc----
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNW---- 317 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~---- 317 (1857)
-.|++-|..++.+++.+-+.+-..+...+..++........+...+..|...+..+..--..... ........|
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~--~~~~d~~~~~~s~ 341 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQ--QSAEDSEKERDSH 341 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh--hhhhhcccccccc
Confidence 35677777888888888888888877777777777666666666666665555554441111100 000111110
Q ss_pred -----------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCCcccchh
Q psy10988 318 -----------GSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESL----QKQLLEKEMELEEWGNNDSWGGDND 382 (1857)
Q Consensus 318 -----------~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeL----KsqLeele~EIeel~e~~~L~~~~r 382 (1857)
|...++.++.....++..+...|..++.++..+...+..- .+.+..+...+..+.. .....+.
T Consensus 342 ~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek--~~re~qe 419 (717)
T PF09730_consen 342 EDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK--SSREDQE 419 (717)
T ss_pred cccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHH
Confidence 1113345555566666666666666655555555444333 4444555555555555 4444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy10988 383 KLATLQQENKVLNEKVSELQTQLLSVEEALK 413 (1857)
Q Consensus 383 KL~akq~E~kvLks~Ie~LEgf~~svk~l~k 413 (1857)
++..++.++..+......-.|.+.+....+-
T Consensus 420 ri~~LE~ELr~l~~~A~E~q~~LnsAQDELv 450 (717)
T PF09730_consen 420 RISELEKELRALSKLAGESQGSLNSAQDELV 450 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6777777666666666666666665554444
No 147
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.51 E-value=46 Score=41.64 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 95 EDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQ 131 (1857)
Q Consensus 95 e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqe 131 (1857)
++...++..+..++..-...+..+.++-+.--.+++.
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~ 113 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQK 113 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333333
No 148
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.48 E-value=24 Score=44.48 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 336 IKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 336 LeeeLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
+...+......+..+......+..++..++.++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555555544
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.39 E-value=32 Score=41.87 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHH
Q psy10988 262 LEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLA 341 (1857)
Q Consensus 262 L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLE 341 (1857)
++.-+..+...++.++.|...+...+..+..-+-.+......++.++..+++......+-=...+..+..++.+....+.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM 221 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666666666666666666666666665554440000012244444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 342 KQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 342 elerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
..+..+..++.+...+...|.....++.
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333333
No 150
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.25 E-value=42 Score=40.78 Aligned_cols=99 Identities=17% Similarity=0.402 Sum_probs=82.6
Q ss_pred HhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHH
Q psy10988 307 ELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLAT 386 (1857)
Q Consensus 307 elE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~a 386 (1857)
.+..+..... .++.+|..+-..+.+....|..=+..+...+.+.+.+-..+..++.+-..|+. .|..-+.-|-+
T Consensus 203 ~~~~~~~~E~----~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~--k~e~~n~~l~~ 276 (309)
T PF09728_consen 203 QVQTLKETEK----ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKS--KWEKSNKALIE 276 (309)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHH
Confidence 5666666666 77899999999999999999999999999999999999999999999999999 99999998888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10988 387 LQQENKVLNEKVSELQTQLLSVEEA 411 (1857)
Q Consensus 387 kq~E~kvLks~Ie~LEgf~~svk~l 411 (1857)
.-.+...+...+..+.........|
T Consensus 277 m~eer~~~~~~~~~~~~k~~kLe~L 301 (309)
T PF09728_consen 277 MAEERQKLEKELEKLKKKIEKLEKL 301 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776666655555444333
No 151
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.17 E-value=59 Score=42.24 Aligned_cols=156 Identities=20% Similarity=0.234 Sum_probs=99.7
Q ss_pred HHHHhhhHHHHHHHHhHhHHHHHHHHHhhHHhhhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy10988 912 EINAKVTELSIIMEKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLK 991 (1857)
Q Consensus 912 ~~~~e~~dl~~~~~~~k~~E~~~~e~~~k~~~~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~ 991 (1857)
+.+.+-+|++.+ ..--+|..+=+++.-.|. =.-.+.++.....-.||...|. +|.++...++.|-.+=+
T Consensus 67 ~Wrq~W~di~~~--~fadvEE~lfeAE~~~dk------frF~kA~~~i~~ie~~l~~iE~---~i~~il~~l~~Lv~sEe 135 (570)
T COG4477 67 EWRQKWDDIVTN--SFADVEEHLFEAEALADK------FRFNKAKHEIDDIEQQLTLIEE---DIEQILEDLNELVESEE 135 (570)
T ss_pred HHHHHHHHHHHh--hcccHHHHHHHHHHhhhh------hhhHHhhhhHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344555666543 233345555444333332 2335677888899999999999 99999998887665543
Q ss_pred HhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHhhhHHHHHHhhhhhhhhHHHHHHHHH
Q psy10988 992 QTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ-DKLRSYTHVENELGQYRSKVYELEQIQARL 1070 (1857)
Q Consensus 992 ~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q-~~~r~~~~~~~e~~q~r~k~ye~~~i~~~~ 1070 (1857)
.-+ ++=...+. ..+.+++++-.-+.+|-+-- .+-..|.+++.++.||-+--.-+++|++++
T Consensus 136 kN~---~~i~~~~e---------------ly~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~e 197 (570)
T COG4477 136 KNS---EEIDHVLE---------------LYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEARE 197 (570)
T ss_pred hhH---HHHHHHHH---------------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 332 22222222 23444555555566666555 677788999999999766645567999999
Q ss_pred HHhhhhhhHHHHhhhhhhhHHHHhHHhhhhhh
Q psy10988 1071 EAERTQWIHEFEVKTNTLSDLQTQLDTYNAKI 1102 (1857)
Q Consensus 1071 e~~~~~~lee~k~k~~~l~~~~~~~~~~n~k~ 1102 (1857)
- |++++.-+..|...-+++=+.=+.|
T Consensus 198 v------l~~~ee~~~~L~~~~e~IP~L~~e~ 223 (570)
T COG4477 198 V------LEEAEEHMIALRSIMERIPSLLAEL 223 (570)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8888877777776666655444444
No 152
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.14 E-value=39 Score=40.54 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADL 266 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql 266 (1857)
++.....+..+.++.++...+-.++++|..+..+|
T Consensus 62 ~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 62 EEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444443
No 153
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.03 E-value=36 Score=39.62 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=39.1
Q ss_pred HHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhchHH
Q psy10988 766 LEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENIEA 832 (1857)
Q Consensus 766 lE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~e~e~~~~~~~e~ 832 (1857)
+-.++..++..++.+.+.| +..-++-+....+.|..|++.|..-.|++.|..=.+...++.
T Consensus 10 i~e~~~~f~~~le~e~~~R------r~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~ 70 (247)
T PF06705_consen 10 INERFSGFESDLENEKRQR------REQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEE 70 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777776666 344566677888888888888777777763333224444433
No 154
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.48 E-value=75 Score=42.31 Aligned_cols=198 Identities=20% Similarity=0.243 Sum_probs=102.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhh
Q psy10988 741 LEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFN 820 (1857)
Q Consensus 741 ~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~ 820 (1857)
+.+.|.+...--+.-++|-..+-..|.+...-+..--+..-...-+++++|-.-.+.+...+-+|-.|..-|.--.
T Consensus 294 L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eq---- 369 (786)
T PF05483_consen 294 LLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQ---- 369 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4444444333333344444444444444444444444444555566777787778888888888877766632111
Q ss_pred hhhhhhhhchHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchhhHHHHHHHHHhHHHhhh------h
Q psy10988 821 EKEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNLESVKQ------E 894 (1857)
Q Consensus 821 e~e~~~~~~~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~nre~e~~klrr~lEe~~~------e 894 (1857)
-|++.+--+++-|+-||..=+.+|++....+. |.+-++..|+.+|.+... -
T Consensus 370 -------qr~~~~ed~lk~l~~eLqkks~eleEmtk~k~----------------~ke~eleeL~~~L~e~qkll~ekk~ 426 (786)
T PF05483_consen 370 -------QRLKKNEDQLKILTMELQKKSSELEEMTKQKN----------------NKEVELEELKKILAEKQKLLDEKKQ 426 (786)
T ss_pred -------HHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhh----------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333556677788888888888776665 567777888888887651 1
Q ss_pred hhHHHHHHHHHHHHh---hHHHHHhhhHHHHHH----HHhHhHHHHHHHHHhhHHh---hhchhhhHHHHhhhhhHHHHH
Q psy10988 895 NTLVVENLQNLIAQK---DYEINAKVTELSIIM----EKCKQYEDKCIELESTLDA---KLTDFSTKEQLNKNKMAELSA 964 (1857)
Q Consensus 895 ~~~~~~~lq~~k~~~---k~~~~~e~~dl~~~~----~~~k~~E~~~~e~~~k~~~---~~~d~~~~~~~~~~e~~el~~ 964 (1857)
+.-..+.|+-.-+.+ =.....+|.||-+.+ ..-..|=.|+.++++-+.. +=.+++.....++.++..+..
T Consensus 427 ~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQ 506 (786)
T PF05483_consen 427 FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQ 506 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333333 112233444544443 3333444444444444443 333444444444444444443
Q ss_pred H
Q psy10988 965 M 965 (1857)
Q Consensus 965 ~ 965 (1857)
+
T Consensus 507 E 507 (786)
T PF05483_consen 507 E 507 (786)
T ss_pred H
Confidence 3
No 155
>KOG0978|consensus
Probab=90.36 E-value=79 Score=42.41 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=57.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNND--AWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEAD 265 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~--~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~q 265 (1857)
...++.+...++.+......+.+-+....+..--.||.. +-|.+...-+++..++..+.++..--+..-.+|..++..
T Consensus 96 ~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~ 175 (698)
T KOG0978|consen 96 EQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLY 175 (698)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666667777777777665556554 333344455566666777777666666666666666666
Q ss_pred HHHHHHHHHHhHhhh
Q psy10988 266 LTRVKEEKEAEVSGK 280 (1857)
Q Consensus 266 l~~lkqElE~l~sdk 280 (1857)
.......+..+..+.
T Consensus 176 ~~~~~~~~~~~~~~l 190 (698)
T KOG0978|consen 176 SDEILRQLDRFRVEL 190 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655555444
No 156
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.69 E-value=42 Score=38.46 Aligned_cols=19 Identities=37% Similarity=0.393 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy10988 355 ESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 355 EeLKsqLeele~EIeel~e 373 (1857)
..+...++..+.++.++-.
T Consensus 153 ~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 153 QALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555666655544
No 157
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.67 E-value=72 Score=40.87 Aligned_cols=86 Identities=14% Similarity=0.240 Sum_probs=55.5
Q ss_pred ccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10988 91 MPNVEDYNEKIR-ALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKD 169 (1857)
Q Consensus 91 ~~~~e~l~ekl~-eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~Led 169 (1857)
-|+|...-..+. .++....-+..++..+.++.++|..++++... ++..+..+..+-+.+..+-..++.-+..++.
T Consensus 248 ~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k----~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 248 EDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMK----ISQKIKTLREKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444433332 34445555556666666666666666665544 2244556666777888888888888888888
Q ss_pred HHhhhhHhhhH
Q psy10988 170 KLRDLDENVTV 180 (1857)
Q Consensus 170 K~~~L~eEIe~ 180 (1857)
|...+.+-+..
T Consensus 324 K~~~~~g~l~k 334 (622)
T COG5185 324 KSQEWPGKLEK 334 (622)
T ss_pred HHHhcchHHHH
Confidence 88888887777
No 158
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.58 E-value=71 Score=42.65 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh----------HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 146 KAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN----------ESAIAKKDEVIEKLKAELESVEKALREK 215 (1857)
Q Consensus 146 l~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln----------~eql~~~ee~iEelk~ELEelEkeleEi 215 (1857)
+..+......-..++..++..+..+......++.. .+.+.. ..++......+...+.++..++..++.+
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~-fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAA-YRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666788888888888888877777777 655544 3667777777777777777777777777
Q ss_pred HHHH
Q psy10988 216 ESEV 219 (1857)
Q Consensus 216 ree~ 219 (1857)
+..+
T Consensus 264 ~~~l 267 (754)
T TIGR01005 264 KKAL 267 (754)
T ss_pred HHHH
Confidence 7777
No 159
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.55 E-value=32 Score=36.70 Aligned_cols=51 Identities=27% Similarity=0.440 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1669 NELTQLISTLQHQLQEARESLSAA--------GRLSDQLNQKSQTIQELTEKVNQLMEE 1719 (1857)
Q Consensus 1669 ekLq~kv~sLQ~QLeEAee~L~aA--------sRLs~QLrkKq~qIeeLkeeaeil~E~ 1719 (1857)
..++..+..++..++-|...|..+ ..|..++.....-|.+|.++..++-.+
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544422 223334444444444444444444333
No 160
>KOG4593|consensus
Probab=89.45 E-value=90 Score=41.70 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=40.4
Q ss_pred HHHhhhhhhhchHHHHHHHHHHHHh---HHHHhhhhhhhhhh-hhhchHHHHHhHHHhHHHHHHHHHHH
Q psy10988 787 LNKRISLFEENNAFLQRSILDLERN---LDEKLKEFNEKEIS-YNENIEASNHKIQQLTQETDTLKAEL 851 (1857)
Q Consensus 787 lek~krk~E~~~~~~qe~i~dle~~---l~e~lkk~~e~e~~-~~~~~e~~qkkikdL~~Ele~l~~~L 851 (1857)
+.-.+-|+++-+..+|...|..+.. +...+-+- +++|. -..++.+.+|+|..+...+.+++...
T Consensus 156 ~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~-eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~ 223 (716)
T KOG4593|consen 156 LGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNE-EKELDRQHKQLQEENQKIQELQASLEERADHE 223 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666677777777666 45555555 66777 66777777777776666666665543
No 161
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.97 E-value=46 Score=43.12 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=21.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKLK 351 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeLQ 351 (1857)
.....+..++.++..+...+...-..+...+
T Consensus 343 ~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 343 DSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777776663
No 162
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.84 E-value=64 Score=39.18 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 240 KLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGK-LEQDAMVKELKSKVETLEASLKQKEQELEG 310 (1857)
Q Consensus 240 ~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk-~~leaELqeLekeveElE~~LEe~~eelE~ 310 (1857)
..+.++..++..+..++..+..++.++......+....... ......+......+..+...+...+..++.
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444455555555555555544444444333322 233344666677777777777776665554
No 163
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=88.72 E-value=52 Score=38.15 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q psy10988 282 EQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQ---------ESTLAKLKT 352 (1857)
Q Consensus 282 ~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEel---------erKLEeLQn 352 (1857)
.++..+......+......+...+..+-.+...-+ .....+......+.++...+... ......+..
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~----~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~a 157 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE----RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQA 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHH
Confidence 34444444444444444444444444444444444 44455555555555555555442 444555666
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10988 353 HSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLS 407 (1857)
Q Consensus 353 E~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~s 407 (1857)
+...+..++..++.++.+... ...-..-+.+-+...+..+...+..|++..+.
T Consensus 158 e~~~l~~~~~~le~el~s~~~--rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 158 ELAALEAQIEMLEQELLSNNN--RQELLQLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677666666665555 33333334444555555666666666666553
No 164
>KOG1003|consensus
Probab=88.69 E-value=53 Score=38.03 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 245 KQELIEVIQNHETLIAKLEADLTRVKEEKE 274 (1857)
Q Consensus 245 ~~eLqeqi~qlEkeIa~L~~ql~~lkqElE 274 (1857)
.+.+.+.-++.+-.+..+++++...+..-+
T Consensus 48 ~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE 77 (205)
T KOG1003|consen 48 MKVIENRAQKLEEKMEAQEAQLKEAKHIAE 77 (205)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 355566666666667777766666655533
No 165
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.52 E-value=4.5 Score=47.14 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q psy10988 231 SDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLE 298 (1857)
Q Consensus 231 ~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE 298 (1857)
..+++.+++.+..|....-+.+.++..+|..+++-+...+.+.++....+.++..++.-++..+..+.
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777777777777788888888877777777777777666666666666555555555543
No 166
>PF13514 AAA_27: AAA domain
Probab=88.46 E-value=1.3e+02 Score=42.29 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=13.0
Q ss_pred HHHHhhhHHHHHHhhhhhh
Q psy10988 1041 DKLRSYTHVENELGQYRSK 1059 (1857)
Q Consensus 1041 ~~~r~~~~~~~e~~q~r~k 1059 (1857)
...+.+...-..++-|+.-
T Consensus 421 ~~~~~l~~~l~~L~~w~~~ 439 (1111)
T PF13514_consen 421 AAERRLAAALAALGPWSGD 439 (1111)
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 5556666666777788776
No 167
>PF13514 AAA_27: AAA domain
Probab=88.41 E-value=1.3e+02 Score=42.26 Aligned_cols=271 Identities=20% Similarity=0.328 Sum_probs=133.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHHH-------------HHHHHHHHHHHH
Q psy10988 92 PNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDK------LQQKIDDEKSVS-------------YQLEEKAIEISQ 152 (1857)
Q Consensus 92 ~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEak------LqelK~kEKeLs-------------keLnEl~~eIr~ 152 (1857)
+.|..+...+..+...+..+..++..+..+...++.- |.+.+..+..+. ..+..+..++..
T Consensus 174 ~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~ 253 (1111)
T PF13514_consen 174 AEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAE 253 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHH
Confidence 3444444445555555555555555544444444432 222222222222 444444444444
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhHh--hhHHHHHHhh-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy10988 153 LTEHNRFLQEEMQSLKDKLRDLDEN--VTVEDIKKAN-----ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNN 225 (1857)
Q Consensus 153 lEnekk~lqErL~~LedK~~~L~eE--Ie~~de~Kln-----~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~ 225 (1857)
+...+..+..++..+..+...+.-. +-. ....|. ...+......+..+..++......+..+...+ |..
T Consensus 254 ~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~-~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~l---g~~ 329 (1111)
T PF13514_consen 254 AQAQLERLQEELAQLEEELDALPVDEELLA-HAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQL---GPD 329 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence 4444444555544444444333211 111 111111 44455556666666666666666666665555 521
Q ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--HHHHHHHH------HHH
Q psy10988 226 ------DAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGK--LEQDAMVK------ELK 291 (1857)
Q Consensus 226 ------~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk--~~leaELq------eLe 291 (1857)
.+...+...+..+..+..+...+...+-.+...+......+..+..++..+.... ..+...+. .+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~~~~d~~ 409 (1111)
T PF13514_consen 330 WDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQRLGDLE 409 (1111)
T ss_pred cccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHHhcccHH
Confidence 2233355566666666666666666666666666666666666666654443321 11111121 222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccc-cCC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 292 SKVETLEASLKQKEQELEGWTDNDN-WGS---------SGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQL 361 (1857)
Q Consensus 292 keveElE~~LEe~~eelE~Lqqe~E-~~~---------~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqL 361 (1857)
..+......+......+...-..+- |.- --....+..+......+...+.....++..+......+..++
T Consensus 410 ~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1111)
T PF13514_consen 410 ARLQEAEQALEAAERRLAAALAALGPWSGDLDALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLEARL 489 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444444444333333332 110 012466777777777777777777777777766666665555
Q ss_pred HHHHH
Q psy10988 362 LEKEM 366 (1857)
Q Consensus 362 eele~ 366 (1857)
..+..
T Consensus 490 ~~l~~ 494 (1111)
T PF13514_consen 490 RRLAA 494 (1111)
T ss_pred HHHHh
Confidence 55443
No 168
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.35 E-value=7.5 Score=41.40 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=65.1
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhh
Q psy10988 584 TAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLIN 663 (1857)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~ 663 (1857)
+...++|...+..+..|+..++..+......|..+.++++.|..+...+...... =..|+.++++|+.|...
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~--------~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKE--------VEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4456788888888889999999999999999999999999998776655332211 11566666666666544
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 664 VEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 664 ~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
-=++.-+ -..+++||+-||.||..
T Consensus 87 ~LellGE-------K~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 87 LLELLGE-------KSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHhcc-------hHHHHHHHHHHHHHHHH
Confidence 3222222 13456666666666654
No 169
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.16 E-value=53 Score=37.39 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=50.0
Q ss_pred cchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhh
Q psy10988 642 VDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 642 ~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~ 698 (1857)
+.|.+ +-|+-.|.++.+-|.......+.+.+.++.++.++.++...+...+.+...
T Consensus 21 ~EDP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~ 76 (221)
T PF04012_consen 21 AEDPE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL 76 (221)
T ss_pred hcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 699999999999999999999999999999999999999999999996665
No 170
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.91 E-value=56 Score=43.61 Aligned_cols=186 Identities=11% Similarity=0.088 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 194 KDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEK 273 (1857)
Q Consensus 194 ~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqEl 273 (1857)
+.+.+..++.+|...+.++...+... |--+. ....+ ...++..+..++..+..+....+.....++..+
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~---~l~~~--~~~~~------~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQS---DLLMG--NNATL------ATQQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc---CCccc--CCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777888888887777776 22221 00111 113334444444444444444444444444333
Q ss_pred HHhHhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHH-HHHHHHHH
Q psy10988 274 EAEVSG---------KLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEE-IKEKLAKQ 343 (1857)
Q Consensus 274 E~l~sd---------k~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEE-LeeeLEel 343 (1857)
..-... ....+..++.+...+..+...+......+..---..- .++.++..++..+.. +..-+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~----~l~~qi~~l~~~i~~e~~~~~~~~ 343 (754)
T TIGR01005 268 QNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVV----AAKSSLADLDAQIRSELQKITKSL 343 (754)
T ss_pred hcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221000 0011234555555555555555555554443333333 444555555555433 22223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHH
Q psy10988 344 ESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSE 400 (1857)
Q Consensus 344 erKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~ 400 (1857)
...+...+.....++.++..++..+.. +.....++..++.+....+.....
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~------~~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQ------AGEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHhHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666653 333445555555555544444333
No 171
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.42 E-value=1.2 Score=49.90 Aligned_cols=104 Identities=26% Similarity=0.365 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 292 SKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEW 371 (1857)
Q Consensus 292 keveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel 371 (1857)
..+..+...+..++.++.+++..-. .+.++|..+..++..+...+......+..+..+...++.++..++.+|.+.
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~----el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKG----ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK 142 (194)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc----cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777666 777777777777777777777777777777777777777777777777777
Q ss_pred ccCCCcccchhHHHHHHHHHHHHHHHHHHH
Q psy10988 372 GNNDSWGGDNDKLATLQQENKVLNEKVSEL 401 (1857)
Q Consensus 372 ~e~~~L~~~~rKL~akq~E~kvLks~Ie~L 401 (1857)
.. .+...++.+.+++.++++++..+..+
T Consensus 143 ~k--~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 143 NK--ANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 77777777777777777777777665
No 172
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.29 E-value=3.8 Score=47.40 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=53.2
Q ss_pred HHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhh
Q psy10988 625 LEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 625 l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~ 698 (1857)
+..++..|...|. .|++++.++++||...+--++.|....++|.|+|+.|++..++++.++|.
T Consensus 147 ~~~EkeeL~~ele-----------ele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El 209 (290)
T COG4026 147 LQKEKEELLKELE-----------ELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVEL 209 (290)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccc
Confidence 3355555555444 47888999999999999999999999999999999999999999998776
No 173
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.16 E-value=7 Score=45.37 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=79.0
Q ss_pred HHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhH
Q psy10988 304 KEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDK 383 (1857)
Q Consensus 304 ~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rK 383 (1857)
.+.+.+.|.+... .+..++..+..+++.++.....+...+.....++..++.++...+.-..++.-
T Consensus 40 sQ~~id~~~~e~~----~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---------- 105 (251)
T PF11932_consen 40 SQKRIDQWDDEKQ----ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---------- 105 (251)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3334444444444 44444444444444444444444444444444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhhcccccccCCCCCCCCcCccchhHhh-hhhcchhHHHHHHHhhHHHHhc
Q psy10988 384 LATLQQENKVLNEKVSELQTQLL-SVEEALKKKENDLEDWGEGDDWGTGNSTELNNL-RAKCSEFEKTIVELKSQEELLK 461 (1857)
Q Consensus 384 L~akq~E~kvLks~Ie~LEgf~~-svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDl-i~~v~eEy~~AVE~~~Lee~L~ 461 (1857)
++..+++.|+.|.. .++|+..--...+ .....++.+- +. +.+.|+.+++. |.-+.-=
T Consensus 106 ---------~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl----------~~L~~~l~~~dv~-~~ek~r~vlea-~~~E~~y 164 (251)
T PF11932_consen 106 ---------LMEQMIDELEQFVELDLPFLLEERQERL----------ARLRAMLDDADVS-LAEKFRRVLEA-YQIEMEY 164 (251)
T ss_pred ---------HHHHHHHHHHHHHhcCCCCChHHHHHHH----------HHHHHhhhccCCC-HHHHHHHHHHH-HHHHHHh
Confidence 78888888888777 4444443000000 0000122222 22 45678888888 7766544
Q ss_pred hheecCchHHh---------HhhhccCCCCcccccCcchhhhhhhhH
Q psy10988 462 QALIDKENELS---------EWGQTNEWGSPSSSDLNTLREESGLLR 499 (1857)
Q Consensus 462 ~~VVd~~dea~---------e~L~~nekGra~ff~Ld~~~~~~~~~~ 499 (1857)
+.-|+-..+-. +||. +|++.+|-.+.-....|...
T Consensus 165 g~~i~~~~~~i~~dG~~~~V~~Lr---lGr~~l~~~t~Dg~~~g~~~ 208 (251)
T PF11932_consen 165 GRTIEVYQGTITLDGEERQVDFLR---LGRVALYYQTLDGSQAGVWD 208 (251)
T ss_pred CCceeEEEEEEeECCeEEEEEEEe---ecchhheeECCCccceeeec
Confidence 44444333322 4444 48877776666666666554
No 174
>KOG4360|consensus
Probab=86.79 E-value=63 Score=41.73 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh------------------------HHHHhhhHHHHH
Q psy10988 144 EEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN------------------------ESAIAKKDEVIE 199 (1857)
Q Consensus 144 nEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln------------------------~eql~~~ee~iE 199 (1857)
..+-..-+.+..+..++.++...-=+....+..++.+ ..+.+. ++.+.. .-.+
T Consensus 86 qsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~-k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~--~~~E 162 (596)
T KOG4360|consen 86 QSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSR-KDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQR--ELLE 162 (596)
T ss_pred HHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhh-hhhhhheeeeccccccccccccCCCccCcchhhHHH--HHHH
Confidence 3444444556677777777777777777777777777 666655 122222 4466
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHh
Q psy10988 200 KLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQ-NHETLIAKLEADLTRVKEEKEAEVS 278 (1857)
Q Consensus 200 elk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~-qlEkeIa~L~~ql~~lkqElE~l~s 278 (1857)
-+...|...+++...++.+. +-++.+-- =+-...++.+ .+.+++-....++....+++.....
T Consensus 163 aL~ekLk~~~een~~lr~k~------------~llk~Et~----~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~ 226 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKA------------MLLKTETL----TYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTK 226 (596)
T ss_pred HHHhhcCChHHHHHHHHHHH------------HHHHhhhc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888 66654431 1223344444 6777777777777777777777776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 279 GKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 279 dk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
+..++..+...|.+.+-.+...+.-...+++.+
T Consensus 227 el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 227 ELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666666655555555555444444
No 175
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.76 E-value=51 Score=42.76 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 346 TLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 346 KLEeLQnE~EeLKsqLeele~EIe 369 (1857)
.+..+..++..++.++..+-..+.
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls 370 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALS 370 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 176
>KOG1853|consensus
Probab=86.68 E-value=50 Score=39.33 Aligned_cols=133 Identities=24% Similarity=0.195 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHH
Q psy10988 251 VIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALK 330 (1857)
Q Consensus 251 qi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLE 330 (1857)
++.++++..-++.+..+++..+.+.+ +.+++-....+-..+..++..+......++.+.+.+. ++++.-..++
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~---Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR----eLEQaNDdLE 125 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERN---KEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR----ELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccHHH
Confidence 34444444444444444444444444 3333333444444455555555555555555555555 4444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHH
Q psy10988 331 KENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNE 396 (1857)
Q Consensus 331 kEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks 396 (1857)
.......=-++++..+++......--|+++|.+.+.-+++. ..+.+.-.++++|..+-..
T Consensus 126 rakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv------qRLkdEardlrqelavr~k 185 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV------QRLKDEARDLRQELAVRTK 185 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 44444444566666677777777777777777766666533 3344455556665555443
No 177
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.54 E-value=58 Score=36.14 Aligned_cols=76 Identities=28% Similarity=0.351 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhH
Q psy10988 105 NEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVS-YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 105 neqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLs-keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~ 180 (1857)
...++.+.-+...+...+..++.++.....+..-+. -.+..+.+....+...+.--+.++..|..+...-..-++.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777788877777776444455 6777777777777777777777777777766666666666
No 178
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=86.48 E-value=1.2e+02 Score=39.68 Aligned_cols=115 Identities=18% Similarity=0.336 Sum_probs=56.3
Q ss_pred hhhHhHHHHHHHHHhhcccCCCCCccccccccccccccccccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 51 QNEYDDLKQKFDEVVNRTKSDNGNQTEVPTTSTVRNGFELMPNVEDYNEKIRAL--NEEVSQLKTKENELHSRIEELEDK 128 (1857)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eL--neqi~eLqeK~~eL~~EIeeLEak 128 (1857)
+--|+..++++|+++++.-.|--+ ..-+-+.+.++|... +..++....++..+..+|...-..
T Consensus 62 e~~Fe~Wrq~W~di~~~~fadvEE---------------~lfeAE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~ 126 (570)
T COG4477 62 ETKFEEWRQKWDDIVTNSFADVEE---------------HLFEAEALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILED 126 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHH---------------HHHHHHHhhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 456888899999988765433211 122234455555443 233444444444444444444444
Q ss_pred HHHHHh-hHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhH
Q psy10988 129 LQQKID-DEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 129 LqelK~-kEKeLs---keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~ 180 (1857)
+..+.. -+++-. .-+.-+..-++..-.....+-+-+..++.++..+..++.+
T Consensus 127 l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~q 182 (570)
T COG4477 127 LNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQ 182 (570)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 444433 111111 3333333334444444455555566666666666666655
No 179
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.33 E-value=94 Score=38.36 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhH---HHHHHHHHHHHHHHHHHH
Q psy10988 325 DIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDK---LATLQQENKVLNEKVSEL 401 (1857)
Q Consensus 325 qLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rK---L~akq~E~kvLks~Ie~L 401 (1857)
+++.+...+..+...+...--..+++..+...++.+...++.++.-+-. +...+ ++++-.|+.-|+..|..+
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~-----g~~~rivDIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILN-----GDENRIVDIDALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555566666666667777777777755444 33334 778888888887777776
Q ss_pred HhhHH
Q psy10988 402 QTQLL 406 (1857)
Q Consensus 402 Egf~~ 406 (1857)
+.=..
T Consensus 209 qeE~~ 213 (319)
T PF09789_consen 209 QEEKE 213 (319)
T ss_pred HHHHH
Confidence 54444
No 180
>KOG0249|consensus
Probab=85.81 E-value=60 Score=43.25 Aligned_cols=211 Identities=19% Similarity=0.239 Sum_probs=126.4
Q ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hHHHHHHHHH
Q psy10988 79 PTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID--------------DEKSVSYQLE 144 (1857)
Q Consensus 79 ~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~--------------kEKeLskeLn 144 (1857)
|+.-|+|++ ++|--....+.....-.+....++..+....++-.--|..+...-. .--.+...|.
T Consensus 23 ~a~~ttr~~-e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~La 101 (916)
T KOG0249|consen 23 LAPLTTRVP-ELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELA 101 (916)
T ss_pred cCCCcCCcH-HHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHh
Confidence 444455554 2333333333333333344445555555554444333333333222 2222235566
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh-----HhhhHHHHHHhh-----HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 145 EKAIEISQLTEHNRFLQEEMQSLKDKLRDLD-----ENVTVEDIKKAN-----ESAIAKKDEVIEKLKAELESVEKALRE 214 (1857)
Q Consensus 145 El~~eIr~lEnekk~lqErL~~LedK~~~L~-----eEIe~~de~Kln-----~eql~~~ee~iEelk~ELEelEkeleE 214 (1857)
......+++++....++++|..++.++..-. .+++.++.+++. ++--....+.+..+...++....++..
T Consensus 102 nkda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 102 NKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred CcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888899999999988887765432 223332333333 334445556666666666666666665
Q ss_pred HHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Q psy10988 215 KESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELK 291 (1857)
Q Consensus 215 iree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLe 291 (1857)
.+-.. +-.-..+-+-++.+-+.++...++.....+....+..++..+.+++.......+++..++..+++++..+.
T Consensus 182 arqre-emneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 182 ARQRE-KMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHH-HhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55444 22222344556666677777777777777888888888888888888888888888888888888888777
No 181
>PRK11281 hypothetical protein; Provisional
Probab=85.79 E-value=1.8e+02 Score=41.22 Aligned_cols=164 Identities=14% Similarity=0.150 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q psy10988 100 KIRALNEEVSQLKTKENELHSRIEELEDKLQQKID-----DEKSVS-YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRD 173 (1857)
Q Consensus 100 kl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~-----kEKeLs-keLnEl~~eIr~lEnekk~lqErL~~LedK~~~ 173 (1857)
+.....+..+.++.++...-.++......++.++. ..+.+. -.+.+++..+.+.+....-.+..+..++.....
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~ 153 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVS 153 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555555555555555555555444 111122 233445555555555555555555555544444
Q ss_pred hhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--Cchh----HHHHHHHHHHHHHH
Q psy10988 174 LDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWG--ASDD----VKEELEKLVVEKQE 247 (1857)
Q Consensus 174 L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~--~~d~----~KeeLe~lreE~~e 247 (1857)
+....++ .+..+.+....+.+++.++ .++.+-| -++. ++.++..+..+..-
T Consensus 154 ~qT~PER--------------------AQ~~lsea~~RlqeI~~~L---~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~ 210 (1113)
T PRK11281 154 LQTQPER--------------------AQAALYANSQRLQQIRNLL---KGGKVGGKALRPSQRVLLQAEQALLNAQNDL 210 (1113)
T ss_pred hhcchHH--------------------HHHHHHHHHHHHHHHHHHH---hCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 5666666666667777666 1211111 2222 23444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHH
Q psy10988 248 LIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAM 286 (1857)
Q Consensus 248 Lqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaE 286 (1857)
.+..+....+...-++.+.+-...++.+.+..+..+.+-
T Consensus 211 ~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~ 249 (1113)
T PRK11281 211 QRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA 249 (1113)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444444443
No 182
>KOG0249|consensus
Probab=85.59 E-value=42 Score=44.59 Aligned_cols=101 Identities=22% Similarity=0.290 Sum_probs=57.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCchHH
Q psy10988 1663 NSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN---NGGKVDKC 1739 (1857)
Q Consensus 1663 e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~---~egKVDK~ 1739 (1857)
++..+.+.|..++.+++++|++++-. -+....-|++|+.+++.+......-+.++++.. .+--||+-
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~----------k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~~~~~ 282 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHD----------KDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERRRETE 282 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHhhc
Confidence 44555667888888888888766554 223345566666666666544444444455443 34444444
Q ss_pred HHHHHhHhhccCCC----CCChHHHHHHHH-hhcCCCHHHHHhh
Q psy10988 1740 LVTNMIVNFLTAPS----RPSRHQALQILA-SVIDMTPQDRQKI 1778 (1857)
Q Consensus 1740 LVkNLlIgyf~tP~----a~~R~EvLrLIa-SVL~~~~eE~eKl 1778 (1857)
+- .|-+|.. .-+|...+|... -|+....+++...
T Consensus 283 ~~-----~~k~S~~~rrp~~grL~~~rdep~kv~~l~~q~w~r~ 321 (916)
T KOG0249|consen 283 TT-----NYKTSGVRRRPRKGRLKALRDEPEKVQTLNEQEWARD 321 (916)
T ss_pred ch-----hhhhhhhhhhhhhhhHHHhhhchHHHHHHHHHHHHHH
Confidence 33 2444431 223666777666 6777777766543
No 183
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.49 E-value=74 Score=40.20 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 241 LVVEKQELIEVIQNHETLIAKLE 263 (1857)
Q Consensus 241 lreE~~eLqeqi~qlEkeIa~L~ 263 (1857)
..+....+.+.+-.+.++|++++
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888
No 184
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.45 E-value=25 Score=43.47 Aligned_cols=123 Identities=18% Similarity=0.281 Sum_probs=81.3
Q ss_pred cccccccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy10988 86 NGFELMPNVEDYNEKIRALNE-EVSQLKTKENELHSRIEELEDKLQQKID---DEKSVSYQLEEKAIEISQLTEHNRFLQ 161 (1857)
Q Consensus 86 ~~~~~~~~~e~l~ekl~eLne-qi~eLqeK~~eL~~EIeeLEakLqelK~---kEKeLskeLnEl~~eIr~lEnekk~lq 161 (1857)
.++.++|.+..+..++..|.. .++.+..++..+..+++.+...-...+. .+..| .+|+++..++..+-..+=.+-
T Consensus 240 ~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI-~eLy~~l~~~~~~~~~lP~lv 318 (388)
T PF04912_consen 240 SSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKI-DELYEILPRWDPYAPSLPSLV 318 (388)
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHH-HHHHHHHHHHHHHhhhhhHHH
Confidence 388999999999999999954 4566666666666666554422222211 22222 689999999999999999999
Q ss_pred HHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 162 EEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 162 ErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
+||+.|..=|....+.... +..++.....+...|...++.+..+...+
T Consensus 319 ~RL~tL~~lH~~a~~~~~~----------l~~le~~q~~l~~~l~~~~~~L~~ve~~~ 366 (388)
T PF04912_consen 319 ERLKTLKSLHEEAAEFSQT----------LSELESQQSDLQSQLKKWEELLNKVEEKF 366 (388)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888777666 33444444444444444444444444334
No 185
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.91 E-value=1.1e+02 Score=37.99 Aligned_cols=69 Identities=9% Similarity=0.240 Sum_probs=36.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 150 ISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN----ESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 150 Ir~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln----~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
......-..++.+++..+.++.......+.. ..++.+ .....-....+..+...+..++........+.
T Consensus 166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~-fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 238 (444)
T TIGR03017 166 VEPAQKAALWFVQQIAALREDLARAQSKLSA-YQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKE 238 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777776666666666666 555544 22222223344555555555554444444444
No 186
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=84.71 E-value=1.4e+02 Score=38.93 Aligned_cols=279 Identities=14% Similarity=0.216 Sum_probs=134.1
Q ss_pred HHHHH-HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh---HHHHh
Q psy10988 118 LHSRI-EELEDKLQQKID-DEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN---ESAIA 192 (1857)
Q Consensus 118 L~~EI-eeLEakLqelK~-kEKeLskeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln---~eql~ 192 (1857)
...-+ +++|.-|+.+.. .|..+..--.....-.++...+..-+.++.+.+..-...|..++.. -..+|+ ...+.
T Consensus 219 ~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~-~q~sL~kvl~aE~k 297 (531)
T PF15450_consen 219 TERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQ-NQKSLNKVLNAEQK 297 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 34444 556666666555 4444441111111133344567788888999999999999999888 777777 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 193 KKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEE 272 (1857)
Q Consensus 193 ~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqE 272 (1857)
.=...-.-....++++...+.+-.+-+..=|.. +-......++.++.-..-+...+..+...|.+|...+.++..+
T Consensus 298 aR~~k~~~e~sk~eeL~~~L~~~lea~q~agkl----a~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~r 373 (531)
T PF15450_consen 298 ARDAKEKLEESKAEELATKLQENLEAMQLAGKL----AQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWR 373 (531)
T ss_pred HHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhh----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 100000111122222222222222222000110 1133345566667666667777777777777777777777776
Q ss_pred HHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy10988 273 KEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAK--- 349 (1857)
Q Consensus 273 lE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEe--- 349 (1857)
+. .+...+...+.++.++ .+..+...-..+..|+.....-...+.+.+..+-..|+++..+.......++.
T Consensus 374 ld---~qEqtL~~rL~e~~~e---~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kId 447 (531)
T PF15450_consen 374 LD---LQEQTLNLRLSEAKNE---WESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKID 447 (531)
T ss_pred hh---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 33 2233344445544442 33333334444444444333111133444444444444444444444333332
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy10988 350 -----LKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALK 413 (1857)
Q Consensus 350 -----LQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~k 413 (1857)
...++..++..|..+-..+.-+++ +.-.+++++.+-. +....|..|+.-.-.++.+..
T Consensus 448 tE~k~R~~eV~~vRqELa~lLssvQ~~~e----~~~~rkiaeiqg~--l~~~qi~kle~siq~nKtiqn 510 (531)
T PF15450_consen 448 TEGKAREREVGAVRQELATLLSSVQLLKE----DNPGRKIAEIQGK--LATNQIMKLENSIQTNKTIQN 510 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 222333333333333333333333 2233556655553 336666667766666666665
No 187
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.40 E-value=25 Score=38.97 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWT 312 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lq 312 (1857)
..+....+..+..+..++..++..+..+...+.....+.......++.+..++..+....+....++..+.
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666665555555555555555555555555555444443
No 188
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=84.22 E-value=90 Score=36.30 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 324 QDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEW 371 (1857)
Q Consensus 324 eqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel 371 (1857)
.+.-.+..++..+..++.-+...+.+.-...+.++.++..+...+.-+
T Consensus 150 a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l 197 (240)
T PF12795_consen 150 AQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRL 197 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444433
No 189
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.60 E-value=87 Score=35.68 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1670 ELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQL 1716 (1857)
Q Consensus 1670 kLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil 1716 (1857)
.+...+..|+.+++.+... ...|..++......|.+++.+...+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~---~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQ---VEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554 4444444555555555554444333
No 190
>KOG2129|consensus
Probab=83.34 E-value=1.4e+02 Score=37.91 Aligned_cols=177 Identities=19% Similarity=0.227 Sum_probs=98.7
Q ss_pred hhhhhhhhhhhhHHHhHHHHHHHHHhhh-hhhhhHHHhhhhhhhchHHHHHHHHHHHHh---HHHHhhhhhhhhhhhhhc
Q psy10988 754 DKINTLIQSKNDLEAKISELNNAQHNKN-NEINDLNKRISLFEENNAFLQRSILDLERN---LDEKLKEFNEKEISYNEN 829 (1857)
Q Consensus 754 dK~n~l~k~k~klE~~i~dle~~l~~e~-~~r~dlek~krk~E~~~~~~qe~i~dle~~---l~e~lkk~~e~e~~~~~~ 829 (1857)
+|...|..-|.+|||. ++++. =.++-+=+.+||+|.+--.-|-++..|.+. |+..|-.- .|.-+|
T Consensus 136 rkl~qLr~ek~~lEq~-------leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQE--qEalvN-- 204 (552)
T KOG2129|consen 136 RKLKQLRHEKLPLEQL-------LEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQE--QEALVN-- 204 (552)
T ss_pred HHHHHHHhhhccHHHH-------HHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHH--HHHHHH--
Confidence 5666677677777764 33443 456777888999998766666666666555 44444332 111111
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchhhHHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHH
Q psy10988 830 IEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNLESVKQ-ENTLVVENLQNLIAQ 908 (1857)
Q Consensus 830 ~e~~qkkikdL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~nre~e~~klrr~lEe~~~-e~~~~~~~lq~~k~~ 908 (1857)
.|=|+|..|..|.+-|-..|+.-..+-. +=||+--. | --++...++...+.+
T Consensus 205 --~LwKrmdkLe~ekr~Lq~KlDqpvs~p~------------------------~prdia~~-~~~~gD~a~~~~~hi~~ 257 (552)
T KOG2129|consen 205 --SLWKRMDKLEQEKRYLQKKLDQPVSTPS------------------------LPRDIAKI-PDVHGDEAAAEKLHIDK 257 (552)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCcccCCC------------------------chhhhhcC-ccccCchHHHHHHHHHH
Confidence 1667788999999999999865544444 33444322 2 124555667777777
Q ss_pred hhHHHHHhhhHHHHHHHHhHhHHHHHHHHHhhHHhhhchhhhHHHHhhhhhHH---HHHHHHHhhh
Q psy10988 909 KDYEINAKVTELSIIMEKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAE---LSAMLESVQA 971 (1857)
Q Consensus 909 ~k~~~~~e~~dl~~~~~~~k~~E~~~~e~~~k~~~~~~d~~~~~~~~~~e~~e---l~~~le~~e~ 971 (1857)
+++++..=.++|+ .--|+|-.++..+...--....+....-.+|+++++- |.|||++.++
T Consensus 258 l~~EveRlrt~l~---~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEses 320 (552)
T KOG2129|consen 258 LQAEVERLRTYLS---RAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESES 320 (552)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 6666555555555 2333443333322111111222222333455666653 6777777776
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=82.71 E-value=1.6e+02 Score=38.57 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
.++.++..+...+...-..|...+.+.-..-. ..+...|..+.+.-.
T Consensus 345 ~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~--~~v~~~L~~L~m~~a 391 (553)
T PRK10869 345 TLALAVEKHHQQALETAQKLHQSRQRYAKELA--QLITESMHELSMPHG 391 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCCCc
Confidence 66677777777777777777777766543321 244455555555433
No 192
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.27 E-value=2e+02 Score=38.83 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=49.2
Q ss_pred hHHHHHHhhhhhhhhcchHHHHHHHHhhhHHHHHHhHHhHH-------HHHhhhhhhhhhhhh-----hhhhHHHHhhHH
Q psy10988 1105 AALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKN-------ELQSLQDAFSVMKSD-----NASLLLEKNTLM 1172 (1857)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~le~~k~~L~~e~ed~~i~~n~~~~-------~l~kkQ~~fd~~~~e-----~~~~~~~k~~~~ 1172 (1857)
....+.|-.++.+.|+.|++.+.-|+.-++=+.||-+++-. +|-+|..+-|-+=.+ -+.|-.|+.|+-
T Consensus 237 ~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVF 316 (739)
T PF07111_consen 237 SQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVF 316 (739)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 33456777888888888888888888888888887666432 233333222211100 012334999988
Q ss_pred HHHHHHHHHHHHH
Q psy10988 1173 ETKLTLEAQLKEL 1185 (1857)
Q Consensus 1173 e~~~ele~~~ke~ 1185 (1857)
.+-.-|.++.-+.
T Consensus 317 aLmVQLkaQeleh 329 (739)
T PF07111_consen 317 ALMVQLKAQELEH 329 (739)
T ss_pred HHHHHhhHHHHHh
Confidence 8776665554333
No 193
>KOG0982|consensus
Probab=82.20 E-value=1.6e+02 Score=37.67 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10988 1560 KAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVL 1639 (1857)
Q Consensus 1560 ~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VL 1639 (1857)
.+.-.+.-|+.|+..+++. ++++-+-..+.+..+++|-...+....+++.+..++..-++.-+...-. |
T Consensus 294 easle~Enlqmr~qqleee----ntelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~-------L 362 (502)
T KOG0982|consen 294 EASLEKENLQMRDQQLEEE----NTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDI-------L 362 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 4444555677888888776 6677777788889999999999999999999999988877765554433 4
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1640 EQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQH-QLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLME 1718 (1857)
Q Consensus 1640 EQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~-QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E 1718 (1857)
-+||.+++.... .+ +.|..++..++. .++-|+-. ..+-+..+-...+.+..|+...-++.+
T Consensus 363 rrfq~ekeatqE--------Li-------eelrkelehlr~~kl~~a~p~---rgrsSaRe~eleqevkrLrq~nr~l~e 424 (502)
T KOG0982|consen 363 RRFQEEKEATQE--------LI-------EELRKELEHLRRRKLVLANPV---RGRSSAREIELEQEVKRLRQPNRILSE 424 (502)
T ss_pred HHHHHhhHHHHH--------HH-------HHHHHHHHHHHHHHHHhhccc---cCchhHHHHHHHHHHHHhccccchhhh
Confidence 558888877622 22 122222222222 23323222 344445566777788888888777777
Q ss_pred HHHHHHHHHHhhh
Q psy10988 1719 ELNKKEAKLKEVN 1731 (1857)
Q Consensus 1719 ~L~kar~KL~~~~ 1731 (1857)
+.+.+...+-.+.
T Consensus 425 qneelngtilTls 437 (502)
T KOG0982|consen 425 QNEELNGTILTLS 437 (502)
T ss_pred hhhhhhhhhhhHH
Confidence 7777655554444
No 194
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.00 E-value=90 Score=34.69 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10988 235 KEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVK-EEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTD 313 (1857)
Q Consensus 235 KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lk-qElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqq 313 (1857)
...++.++-....+...+..++..+...+.-=+.+- -.++++..+-..+...+.+-+.++..+....-.-.+.+..+..
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666655554222222 2233333333333333333333333333333333333333333
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 314 NDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 314 e~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
... .+...+..+..++......+...+..+...+.+...+......+...-.
T Consensus 85 Kl~----~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 85 KLH----FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333 3333333444444444444444444444444444444444444443333
No 195
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.37 E-value=3.9 Score=45.87 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 334 EEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 334 EELeeeLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
.+....++.++-.+..++.+.+.++.++..++.+=.
T Consensus 140 ~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 140 KEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444333
No 196
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=81.20 E-value=1.5e+02 Score=36.63 Aligned_cols=83 Identities=34% Similarity=0.387 Sum_probs=63.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHh
Q psy10988 588 ERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEAL 667 (1857)
Q Consensus 588 ~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~ 667 (1857)
+++.-.+..+.+++..+|..|.-.-.+-+.|.+.+..|.+.--.++...+. ++|-+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq------------------------EEE~i 78 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQ------------------------EEEFI 78 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHH
Confidence 777888899999999999999998888899999988887765555444433 25567
Q ss_pred hHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 668 VNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 668 ~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
.|.|-..-..|..+-+.|-.+|+..|.
T Consensus 79 sN~LlKkl~~l~keKe~L~~~~e~EEE 105 (310)
T PF09755_consen 79 SNTLLKKLQQLKKEKETLALKYEQEEE 105 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777776665
No 197
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.01 E-value=43 Score=37.16 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q psy10988 259 IAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLE 298 (1857)
Q Consensus 259 Ia~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE 298 (1857)
+......+..+.+++..+.........++..++..+....
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333333333333333333333333333333333
No 198
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.96 E-value=13 Score=39.07 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhh
Q psy10988 717 KKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEE 796 (1857)
Q Consensus 717 ~~e~i~kl~kEkk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~ 796 (1857)
.+-++..|-+++.+|..+ +..|++ -..+.++-.+.|+++|+|+-..++-+|-.+++|+.+..|-++
T Consensus 28 ~K~S~~eL~kqkd~L~~~----------l~~L~~----q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 28 EKTSQGELAKQKDQLRNA----------LQSLQA----QNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHhHHHHHHH----------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666665555 333433 234678889999999999999999999999999999999998
Q ss_pred chHHHH
Q psy10988 797 NNAFLQ 802 (1857)
Q Consensus 797 ~~~~~q 802 (1857)
|-+.+.
T Consensus 94 dka~le 99 (107)
T PF09304_consen 94 DKAILE 99 (107)
T ss_dssp HHHHHH
T ss_pred hhhHHH
Confidence 876654
No 199
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=80.87 E-value=1.6e+02 Score=36.78 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=18.8
Q ss_pred ccccccccc----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 85 RNGFELMPN----VEDYNEKIRALNEEVSQLKTKENEL 118 (1857)
Q Consensus 85 ~~~~~~~~~----~e~l~ekl~eLneqi~eLqeK~~eL 118 (1857)
++||++.|. -+.+-.+|..|.-++.++...+..+
T Consensus 76 ~~~~e~~g~~~~e~Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 76 SGEYEILGDDSSEKESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CCceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357787776 3444455555555555555544443
No 200
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.80 E-value=42 Score=36.02 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHh
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKA 186 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kl 186 (1857)
.-++.+.+.|+.++.++..++.++..|......+..+|-. +....
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~-l~~~~ 60 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVK-LMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4567788889999999999999999999999999888888 54443
No 201
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=79.74 E-value=1.6e+02 Score=36.10 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 95 EDYNEKIRALNEEVSQLKTKENELHSRIEELED 127 (1857)
Q Consensus 95 e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEa 127 (1857)
..+..+|..+......+.-+...+.+....+..
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~k 57 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQK 57 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333333
No 202
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=79.30 E-value=28 Score=36.10 Aligned_cols=45 Identities=16% Similarity=0.394 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 90 LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 90 ~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
+.|.+...-..|..+..++..+..++..+..++.+.+.-+.++..
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468888999999999999999999999999999888888888877
No 203
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.02 E-value=3.1e+02 Score=39.10 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 99 EKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 99 ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
++........+.++..+...-+++.++..++...+.
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~ 93 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERD 93 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 344444445555555555555555555555554443
No 204
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.73 E-value=14 Score=44.70 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 329 LKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 329 LEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e 373 (1857)
+..+-...-.........+.....+...+..++......+..++.
T Consensus 90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444445555555555555555555555544
No 205
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=78.23 E-value=2.8e+02 Score=38.10 Aligned_cols=245 Identities=19% Similarity=0.231 Sum_probs=129.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHH
Q psy10988 93 NVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQ----KIDDEKSVSYQLEEKAIEI-SQLTEHNRFLQEEMQSL 167 (1857)
Q Consensus 93 ~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqe----lK~kEKeLskeLnEl~~eI-r~lEnekk~lqErL~~L 167 (1857)
.|+........|..+++....+.-.+.-++.-|..-|.+ ++....+=...+++.+.++ +.++..+.-++.++..+
T Consensus 18 gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~ 97 (769)
T PF05911_consen 18 GWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAEL 97 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555555555544432 2221111114444444443 44455555666666666
Q ss_pred HHHHhhhhHhhhHHHHHHhh---------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHH
Q psy10988 168 KDKLRDLDENVTVEDIKKAN---------ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEEL 238 (1857)
Q Consensus 168 edK~~~L~eEIe~~de~Kln---------~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeL 238 (1857)
..+...+..+-.. +..-+. .......+..+..+...|+..+++.--++-++ -.+.++|
T Consensus 98 ~~~l~~~~~e~~~-l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~------------~~~~kel 164 (769)
T PF05911_consen 98 SKRLAESAAENSA-LSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYEL------------HVLSKEL 164 (769)
T ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Confidence 6666665555554 333222 55556666666667777777777666655555 4443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHH-----------------HHHHHHHHHHHHHHH
Q psy10988 239 EKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAM-----------------VKELKSKVETLEASL 301 (1857)
Q Consensus 239 e~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaE-----------------LqeLekeveElE~~L 301 (1857)
.+|.+-.++-.+--.+ ..++-++.+ +-++++++| +...+.+|+.+-..-
T Consensus 165 -eir~~E~~~~~~~ae~------------a~kqhle~v-kkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~ 230 (769)
T PF05911_consen 165 -EIRNEEREYSRRAAEA------------ASKQHLESV-KKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDS 230 (769)
T ss_pred -HHHHHHHHHhHHHHHH------------HHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhcccc
Confidence 1222222221111111 112222222 223344444 333333333331100
Q ss_pred HHHH----------------HHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 302 KQKE----------------QELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKE 365 (1857)
Q Consensus 302 Ee~~----------------eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele 365 (1857)
-.-+ ..........+ -+-.+|..++.+..-+++-|...+..|..-+.-+-.+-++|..++
T Consensus 231 ~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e 306 (769)
T PF05911_consen 231 GENRRRRSPSRPSSPHDFSPQNPQKRSKESE----FLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLE 306 (769)
T ss_pred ccccCCCCCCcccccccccccccccchhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00111122222 566788999999999999999999999999999999999999999
Q ss_pred HHH
Q psy10988 366 MEL 368 (1857)
Q Consensus 366 ~EI 368 (1857)
.++
T Consensus 307 ~ql 309 (769)
T PF05911_consen 307 AQL 309 (769)
T ss_pred HHH
Confidence 999
No 206
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.23 E-value=3.3e+02 Score=38.90 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----cCCCchHHHHHHHh
Q psy10988 1707 QELTEKVNQLMEELNKKEAKLKEVN----NGGKVDKCLVTNMI 1745 (1857)
Q Consensus 1707 eeLkeeaeil~E~L~kar~KL~~~~----~egKVDK~LVkNLl 1745 (1857)
.+|+=--..+...++.++..+..-. +...+|-.-+..+.
T Consensus 407 ~~L~~~q~QL~~~~~~l~~~L~~~lFWv~s~~Pi~l~w~~~~~ 449 (1109)
T PRK10929 407 TKLKVANSQLEDALKEVNEATHRYLFWVADVSPISLSYPLEIA 449 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHH
Confidence 3344333444444555555555443 66777766665544
No 207
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.08 E-value=1.5e+02 Score=36.85 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH
Q psy10988 203 AELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLE 282 (1857)
Q Consensus 203 ~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~ 282 (1857)
.+|-+..+.++.+++-+ ..-+.+.++++.....|.++++....=+.+..+..+.++.-+-....+...
T Consensus 78 rk~~e~~eglr~i~es~------------~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~ 145 (401)
T PF06785_consen 78 RKITEKDEGLRKIRESV------------EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQC 145 (401)
T ss_pred HHHHhccHHHHHHHHHH------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444455566666666 666666666666666777777766666666666666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 283 QDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLL 362 (1857)
Q Consensus 283 leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLe 362 (1857)
+.-.+..+.-+..+.+.+-.++..++.+...... .-..++...+.....-++..+..+..|++++.
T Consensus 146 lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq--------------~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVq 211 (401)
T PF06785_consen 146 LQLQLDALQQECGEKEEESQTLNRELAEALAYQQ--------------ELNDEYQATFVEQHSMLDKRQAYIGKLESKVQ 211 (401)
T ss_pred HHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH--------------HHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Confidence 5555555555555555555555444444332222 12233344455555556666666666677777
Q ss_pred HHHHHHhhhcc
Q psy10988 363 EKEMELEEWGN 373 (1857)
Q Consensus 363 ele~EIeel~e 373 (1857)
.+.-||..+-+
T Consensus 212 DLm~EirnLLQ 222 (401)
T PF06785_consen 212 DLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHH
Confidence 77666665444
No 208
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=77.91 E-value=1.5e+02 Score=34.89 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 93 NVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 93 ~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
+|++....+..+...++.....+..+..++..|..+...+..
T Consensus 25 ~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~ 66 (264)
T PF06008_consen 25 SIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQE 66 (264)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666555
No 209
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.76 E-value=65 Score=40.10 Aligned_cols=94 Identities=18% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1539 ENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKL 1618 (1857)
Q Consensus 1539 ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~ql 1618 (1857)
+..-+|.|+..|..++. ..+....+.+..|.-+-..+..+-..+.+=-+--|.|++.|-++++.+..++...+.+.
T Consensus 214 d~kDWR~hleqm~~~~~----~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 214 DAKDWRSHLEQMKQHKK----SIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred CcchHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777776332 34445555666666666665555555555555566666666666666666666665555
Q ss_pred HHHHHHHHHHHHHHHhHH
Q psy10988 1619 YQAEDVVQKHQASLTNLQ 1636 (1857)
Q Consensus 1619 s~sek~~rk~e~sL~NLQ 1636 (1857)
..+...+...-..|+.+.
T Consensus 290 ~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 290 KQASEGVSERTRELAEIS 307 (359)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555444444444
No 210
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.34 E-value=52 Score=43.20 Aligned_cols=57 Identities=25% Similarity=0.249 Sum_probs=32.8
Q ss_pred ccccccCCCCCCCCCcccc----cCCCCc-hhhHHHHHhhhhhHhHHHHHHHHHhhcccCCCC
Q psy10988 16 DNAMQTDPELPLPLEPCQT----TGSDNS-DEISEAYDMLQNEYDDLKQKFDEVVNRTKSDNG 73 (1857)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (1857)
-||+-..|.-.||.+--+. +|..-+ |....|...--.-|..++.||-.|=.++ +.+|
T Consensus 311 f~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~-~~~g 372 (652)
T COG2433 311 FNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKL-PELG 372 (652)
T ss_pred cCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 4899999999998875443 332222 2223333333345778888887654433 4443
No 211
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.34 E-value=1.2e+02 Score=35.86 Aligned_cols=132 Identities=27% Similarity=0.403 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10988 1560 KAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVL 1639 (1857)
Q Consensus 1560 ~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VL 1639 (1857)
.+|....+|..||..+++....+..++. .+...+..|..+.+.+..++..+..+...++.
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~----e~e~~a~~Leek~k~aeeea~~Le~k~~eaee---------------- 61 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALE----ESEETAEELEEKLKQAEEEAEELEQKRQEAEE---------------- 61 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 3566677788888888888665555332 23334445555555555554444333222222
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1640 EQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEE 1719 (1857)
Q Consensus 1640 EQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~ 1719 (1857)
...+|+.+..........|.. .+.++... +.++......+......|++++..+...
T Consensus 62 -------------~~~rL~~~~~~~~eEk~~Le~-------e~~e~~~~---i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 62 -------------EKQRLEEEAEMQEEEKEQLEQ-------ELREAEAE---IARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp -------------HHHHHHH------------HH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233222222222223333 44444444 6777777888888899999999999999
Q ss_pred HHHHHHHHHhhhcCC
Q psy10988 1720 LNKKEAKLKEVNNGG 1734 (1857)
Q Consensus 1720 L~kar~KL~~~~~eg 1734 (1857)
+..+..+|..+.+.+
T Consensus 119 ~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 119 EEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHhcc
Confidence 999888887766443
No 212
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.99 E-value=2.9e+02 Score=37.62 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN 187 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln 187 (1857)
..+.++..++..+...-..+.+++..+.++...|..++.. .-..++
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~-vl~~l~ 624 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR-VLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 3445555555555566666666666666666666666665 444444
No 213
>KOG4403|consensus
Probab=76.74 E-value=2.3e+02 Score=36.33 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 1699 LNQKSQTIQELTEKVNQLMEELNKKEAKLKEV 1730 (1857)
Q Consensus 1699 LrkKq~qIeeLkeeaeil~E~L~kar~KL~~~ 1730 (1857)
++...+-|=.++.........|.+-+-|+...
T Consensus 392 lDdVD~kIleak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 392 LDDVDHKILEAKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788877777666666666666544
No 214
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.59 E-value=1.9e+02 Score=39.17 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10988 336 IKEKLAKQESTLAKLKTHS 354 (1857)
Q Consensus 336 LeeeLEelerKLEeLQnE~ 354 (1857)
+..-|...-..++.+...+
T Consensus 690 I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 690 IKEILKQQGEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 215
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=76.06 E-value=3.5e+02 Score=38.16 Aligned_cols=87 Identities=7% Similarity=0.093 Sum_probs=47.8
Q ss_pred hHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHhHHHHhhhhhhhh----hh----hhhchHHHHHh
Q psy10988 765 DLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKE----IS----YNENIEASNHK 836 (1857)
Q Consensus 765 klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~l~e~lkk~~e~e----~~----~~~~~e~~qkk 836 (1857)
.+++........+..-......+.....-+...+..++..+......+...|.+. -|. +. -...++.+...
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~f~~~~~~~~~~~~~~~~~~l~~~ 785 (1047)
T PRK10246 707 LPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQAS-VFDDQQAFLAALLDEETLTQLEQL 785 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555555556666666666666666666666666654 331 11 11233345666
Q ss_pred HHHhHHHHHHHHHHHH
Q psy10988 837 IQQLTQETDTLKAELV 852 (1857)
Q Consensus 837 ikdL~~Ele~l~~~L~ 852 (1857)
|.++.+.+..+...+.
T Consensus 786 i~~~~~~~~~~~~~~~ 801 (1047)
T PRK10246 786 KQNLENQRQQAQTLVT 801 (1047)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555555443
No 216
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.81 E-value=97 Score=36.02 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 252 IQNHETLIAKLEADLTRVKEEKEA 275 (1857)
Q Consensus 252 i~qlEkeIa~L~~ql~~lkqElE~ 275 (1857)
++.+...|..+......+..+++.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 217
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=75.63 E-value=2.3e+02 Score=37.00 Aligned_cols=58 Identities=17% Similarity=-0.003 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHhhcCCCCCCCCCCCCcC---C-cccCCCCCCcCCCCCCCCCCcc-cC--CCchhhh
Q psy10988 1788 PNQSLSEAFIQFLESESSPRSKAQSSTPVSR---R-TSSTTSPLLFPESALPSLPQFS-TM--GSGSMLK 1850 (1857)
Q Consensus 1788 ~neSfSelFVkFLEtES~p~~p~~l~~~~~~---s-t~s~~s~~~~~~~~l~~~~~f~-~~--~s~silk 1850 (1857)
+--|+..|.-+|-.-...-+...-+|+|++| + .+...|-++|++ .++.. |. +..|||-
T Consensus 464 Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~~~~-----~~~~~~~~~~d~~~ila 528 (582)
T PF09731_consen 464 GVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLLFRP-----KGGEVDPEGDDVESILA 528 (582)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheeeeec-----CCCCCCCCCCCHHHHHH
Confidence 5667888888885554433333334444442 3 455555554443 33332 22 6666664
No 218
>KOG4807|consensus
Probab=75.41 E-value=2.3e+02 Score=35.79 Aligned_cols=173 Identities=22% Similarity=0.305 Sum_probs=89.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCcchhhhhhhhhhhhhhh-HHHHHhhHhHHHHHHHHHHHHHHhh
Q psy10988 1190 TQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENILKEKDATL-SEMLKKSEAKDKTLQEMQAALEKHL 1268 (1857)
Q Consensus 1190 te~~~~~~~~ee~~~~le~~l~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~-~El~k~~~~~e~e~~elq~ale~~e 1268 (1857)
.+.-.+.-.|+.....|+..+-|+|+-.-- |.=++.-+ -+ ..+|-+- |+ +++.+.++|.|+++.
T Consensus 245 dq~~~LsE~~~k~~q~Le~~~~~~~~~~P~--t~~~~~~~----~e-~~~~~sD~~~------~L~k~vQ~L~AQle~-- 309 (593)
T KOG4807|consen 245 DQQNRLSEEIEKKWQELEKLPLRENKRVPL--TALLNQSR----GE-RRGPPSDGHE------ALEKEVQALRAQLEA-- 309 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCCc--cccCCCcc----cc-ccCCCCcchH------HHHHHHHHHHHHHHH--
Confidence 345567788888999999889999987650 01111111 00 1122221 32 566777888888771
Q ss_pred hhhhhHHHHHHh--hhh-------------HHHHHHHHHHHH----HHHHHhhhhhccccCCCCCccccchhHHHHHHhH
Q psy10988 1269 SEKYQFEKEALE--LRT-------------EDLEYKLQEKEK----MIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRE 1329 (1857)
Q Consensus 1269 ~~~~r~~~e~~q--~~~-------------~~~~~~l~ekee----~~e~~r~~~~~~~~~~~~~~~~~~~~~h~~~l~~ 1329 (1857)
.|++.+..| +|+ +--+|-+++.++ .|+.+. |.|+|.|..
T Consensus 310 ---~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQ-------------------RqHqRELek 367 (593)
T KOG4807|consen 310 ---WRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQ-------------------RQHQRELEK 367 (593)
T ss_pred ---HHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHH
Confidence 222222111 111 123555666554 577777 888888833
Q ss_pred HHHHHHHHHH-HHhhhhhhHhhhhhhHhHHhhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccchHH
Q psy10988 1330 LQLMNESLQN-EVLRSATEIDNMKETITYLEQYNLQLSKSQESSTTLTLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQ 1408 (1857)
Q Consensus 1330 ~~~mq~~L~~-E~~~~~~e~~~~k~~~~~le~~~~~le~~l~~a~~~~e~q~~~~~~k~l~~~lv~~v~~KH~Es~~Yh~ 1408 (1857)
|+.-..-|=+ |.-.....|-.||+ .+-.+|+..|+.+..+ ++.+++++ ++|..
T Consensus 368 LreEKdrLLAEETAATiSAIEAMKn------AhrEEmeRELeKsqSv---nsdveaLR-----------------rQyle 421 (593)
T KOG4807|consen 368 LREEKDRLLAEETAATISAIEAMKN------AHREEMERELEKSQSV---NSDVEALR-----------------RQYLE 421 (593)
T ss_pred HHHHHHhhhhhhhhhhhHHHHHHHH------HHHHHHHHHHHhhhcc---ccChHHHH-----------------HHHHH
Confidence 3322222222 33222333445554 2334455555444432 33444444 45777
Q ss_pred HHHHHHHHhhhhchhhhhhhhHHH
Q psy10988 1409 EILRLNGILSEELPKLKDLGGQVA 1432 (1857)
Q Consensus 1409 eIqrLq~~L~ee~~~~eeL~eq~~ 1432 (1857)
+++-++.+| +-|.+||.
T Consensus 422 elqsvqREL-------eVLSEQYS 438 (593)
T KOG4807|consen 422 ELQSVQREL-------EVLSEQYS 438 (593)
T ss_pred HHHHHHHHH-------HHHHHHHH
Confidence 777777766 55666664
No 219
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.36 E-value=1.9e+02 Score=34.27 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy10988 244 EKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDN 316 (1857)
Q Consensus 244 E~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E 316 (1857)
+..++..++++++-+.......+.........+.........+-..|..+..+++.....+..........-.
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~ 78 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKE 78 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444444444444444444444444444444444444444444443333333
No 220
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=73.98 E-value=2.6e+02 Score=35.56 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=18.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHH
Q psy10988 376 SWGGDNDKLATLQQENKVLNEKVSE 400 (1857)
Q Consensus 376 ~L~~~~rKL~akq~E~kvLks~Ie~ 400 (1857)
++......++..+..+...+..++.
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555666777777777777777777
No 221
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.71 E-value=24 Score=42.90 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHH
Q psy10988 328 ALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQ 388 (1857)
Q Consensus 328 eLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq 388 (1857)
.+..++..++.+...+.......-...+.++.++.....+..++.. ++.-....|+.++
T Consensus 75 ~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~--q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 75 ELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKN--QYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555555555555555 4444444554443
No 222
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.13 E-value=1.5e+02 Score=37.01 Aligned_cols=61 Identities=15% Similarity=0.414 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 158 RFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 158 k~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
+++++++..+-..++....++.. ...+.+ ..-+......+..+..+|+..+.++++.....
T Consensus 262 k~iN~qle~l~~eYr~~~~~ls~-~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 262 KYINNQLEPLIQEYRSAQDELSE-VQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555555555555555555 444444 44444455555556666666666655555544
No 223
>KOG1899|consensus
Probab=72.97 E-value=2.4e+02 Score=37.66 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10988 1597 VEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQF 1642 (1857)
Q Consensus 1597 VEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQF 1642 (1857)
-..+|++++.|+..+|.++.+.+-.-++|..+...+..|-.+|+.-
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~k 151 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEK 151 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999877643
No 224
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=72.14 E-value=4.3e+02 Score=37.36 Aligned_cols=94 Identities=16% Similarity=0.041 Sum_probs=42.6
Q ss_pred hhhhhhcchHHHHHHHHhhhHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhh-HHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy10988 1114 EMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASL-LLEKNTLMETKLTLEAQLKELADNETQY 1192 (1857)
Q Consensus 1114 ~~~~~~~~le~~k~~L~~e~ed~~i~~n~~~~~l~kkQ~~fd~~~~e~~~~-~~~k~~~~e~~~ele~~~ke~r~~~te~ 1192 (1857)
.+...++.....-..+.+.+..+.-....+...+...+..|...++...-. .-+-...--...++++.......+.+.+
T Consensus 714 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 793 (1047)
T PRK10246 714 VALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQR 793 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555444444555566666677777665542100 0000001122233444445555555555
Q ss_pred hHHHHHHHHHHHHHH
Q psy10988 1193 KQMQIVYEDTQRKLN 1207 (1857)
Q Consensus 1193 ~~~~~~~ee~~~~le 1207 (1857)
-.+...+......++
T Consensus 794 ~~~~~~~~~~~~~l~ 808 (1047)
T PRK10246 794 QQAQTLVTQTAQALA 808 (1047)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444433333
No 225
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.35 E-value=1.6e+02 Score=31.97 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 247 ELIEVIQNHETLIAKLEADLTRVKEEK 273 (1857)
Q Consensus 247 eLqeqi~qlEkeIa~L~~ql~~lkqEl 273 (1857)
.++....++..++-..+..+++++.++
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555555544
No 226
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.67 E-value=70 Score=37.70 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEME 367 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~E 367 (1857)
.++|..++..|...+............+..++.-++.++..+..+
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555556666666666555
No 227
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=70.29 E-value=2.1e+02 Score=33.03 Aligned_cols=121 Identities=22% Similarity=0.270 Sum_probs=84.1
Q ss_pred HHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHH
Q psy10988 1578 RVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFL 1657 (1857)
Q Consensus 1578 kl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerl 1657 (1857)
+...+..+-+.++.|-.+.|+.|+.+++....-.+++...+..++..+.--.... ...
T Consensus 50 kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa----------------------~~A 107 (188)
T PF05335_consen 50 KAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAA----------------------QQA 107 (188)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
Confidence 3455666667788888888999999998888888887777766655444322222 122
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 1658 QGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEV 1730 (1857)
Q Consensus 1658 r~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~ 1730 (1857)
+.++ ..|+.-|...+..+..+... +.--...|..|...++..+.+++.+...|..++.-+...
T Consensus 108 ~~q~-------~~L~~~l~~a~~nl~~a~~~---a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 108 QQQL-------ETLKAALKAAQANLANAEQV---AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223 45566666666666666665 455556788899999999999999999998887766543
No 228
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.79 E-value=55 Score=43.04 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 280 KLEQDAMVKELKSKVETLEASLKQKEQELE 309 (1857)
Q Consensus 280 k~~leaELqeLekeveElE~~LEe~~eelE 309 (1857)
...+..++.+++.+++.+++.++.++.++.
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555554444443
No 229
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=69.52 E-value=79 Score=36.77 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=17.5
Q ss_pred HHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 271 EEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEG 310 (1857)
Q Consensus 271 qElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~ 310 (1857)
.+++.+.++..+...+..-+..++..++..+..++..+..
T Consensus 66 ~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 66 LELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444
No 230
>KOG4809|consensus
Probab=69.24 E-value=3.8e+02 Score=35.51 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=68.3
Q ss_pred HHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhhhHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHhhhhhhhhhh
Q psy10988 680 GKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDEKN--TLDNIKVEKENLEIQLDNLNTNYQDKIN 757 (1857)
Q Consensus 680 ~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~~~e~i~kl~kEkk--~l~e~~~~~~~~~~~ld~l~~~eedK~n 757 (1857)
.+.+=|.+.+.+++..+| |+...|-..|+.|-||....- .+- +.|-..-..+-+. --.+.-
T Consensus 243 ~e~~llr~t~~~~e~riE-----------tqkqtl~ardesIkkLlEmLq~kgmg-----~~~~~~df~~~~~-~a~~~~ 305 (654)
T KOG4809|consen 243 EEQFLLRSTDPSGEQRIE-----------TQKQTLDARDESIKKLLEMLQRKGMG-----RSNQPRDFTKANL-SAHEMA 305 (654)
T ss_pred HHHHHHHhcCchHHHHHH-----------HHHhhhhhHHHHHHHHHHHHHHhhcc-----cccchhhHHHHHH-hHHHHH
Confidence 344555555666555555 467788889999988876543 111 0111111111111 111111
Q ss_pred hhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHh---HHHHhhhhhhhhhh-hhhchHHH
Q psy10988 758 TLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERN---LDEKLKEFNEKEIS-YNENIEAS 833 (1857)
Q Consensus 758 ~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~---l~e~lkk~~e~e~~-~~~~~e~~ 833 (1857)
|+-- +.+..|.-|-.--.+..+++. | -+--|+.+++.+.|-|.-|.+. -++.|+-- -.+.| +.+-++.+
T Consensus 306 h~r~---~~er~IerLkeqr~rderE~~--E-eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dl-kehassLas~glk~ 378 (654)
T KOG4809|consen 306 HMRM---KVERIIERLKEQRERDERERL--E-EIESFRKENKDLKEKVNALQAELTEKESSLIDL-KEHASSLASAGLKR 378 (654)
T ss_pred hhhc---hHHHHHHHhcchhhhhHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Confidence 1111 124444443322222222111 1 1334555666666666666555 23333333 33455 66777777
Q ss_pred HHhHHHhHHHHHHHHHH
Q psy10988 834 NHKIQQLTQETDTLKAE 850 (1857)
Q Consensus 834 qkkikdL~~Ele~l~~~ 850 (1857)
++++++|.==||.-+++
T Consensus 379 ds~Lk~leIalEqkkEe 395 (654)
T KOG4809|consen 379 DSKLKSLEIALEQKKEE 395 (654)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 77777665545444443
No 231
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=68.18 E-value=2.3e+02 Score=32.69 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHH
Q psy10988 251 VIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALK 330 (1857)
Q Consensus 251 qi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLE 330 (1857)
-|..+..+|+.++.....++..+..+..+..++..-|.....++.++...+.........|. .++.++..++
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~--------~~k~rl~~~e 99 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ--------NLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555444443331 2233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 331 KENEEIKEKLAKQESTLAKLKTHSESLQKQLL 362 (1857)
Q Consensus 331 kEIEELeeeLEelerKLEeLQnE~EeLKsqLe 362 (1857)
+++..++-.-+.+..++..+..+...+..+..
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 232
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.85 E-value=4.6e+02 Score=36.02 Aligned_cols=235 Identities=20% Similarity=0.226 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHhhhhchH---HHHH---HHHHHHHHHHHHHHHHHHHhhhhh
Q psy10988 1511 RLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTS---ELVK---AEQTIQDLHVKLREAEERVKSSAT 1584 (1857)
Q Consensus 1511 ~LkqlQ~E~eelq~E~~~lrEKe~kl~~ELERLR~HLlE~EesyTq---Eal~---aE~r~kELr~RL~elEEkl~~SS~ 1584 (1857)
.++=|=.|+.+|..+.-.. --.+|..|++.+-.-|-.+--+-+- =||+ +......||.||..+.+.|.-=-.
T Consensus 338 t~KYLLgELkaLVaeq~Ds--E~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~ 415 (861)
T PF15254_consen 338 TLKYLLGELKALVAEQEDS--EVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEK 415 (861)
T ss_pred HHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3445556666665553222 2357888888887544443322211 1122 234456677777777666543111
Q ss_pred hh-hHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHhhHhhH-----
Q psy10988 1585 AY-TSASVRSNQQV-------EALTSQVKSLTEQKEKLQEKLYQAEDVVQK---HQASLTNLQIVLEQFQAEKDN----- 1648 (1857)
Q Consensus 1585 A~-tsAs~ra~qQV-------EsLQ~Ql~~Le~QRDeeq~qls~sek~~rk---~e~sL~NLQ~VLEQFQ~EeEr----- 1648 (1857)
+- ++-+..-+-.+ -+||.|+.......|.++.+-.+.-+.+.- ...++..+ | .++|-
T Consensus 416 ~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~------~-~ekd~~l~~~ 488 (861)
T PF15254_consen 416 AEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKM------F-QEKDQELLEN 488 (861)
T ss_pred hcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHhh
Confidence 10 00001112233 345566665555555554332222222211 11122111 1 22222
Q ss_pred --HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1649 --EIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAK 1726 (1857)
Q Consensus 1649 --~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~K 1726 (1857)
.+..++.+++.++ +..-..|+++|-+|++|+-. -.-|.--|+....+|+.|++-.--++....++..-
T Consensus 489 kq~~d~e~~rik~ev-------~eal~~~k~~q~kLe~sekE---N~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~d 558 (861)
T PF15254_consen 489 KQQFDIETTRIKIEV-------EEALVNVKSLQFKLEASEKE---NQILGITLRQRDAEIERLRELTRTLQNSMAKLLSD 558 (861)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHhh---hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2345666777777 55667788899999988765 45666778999999999999888888887766655
Q ss_pred HHhhhcCCCchHHHHHHHhHhhccCCC---CCChHHHHHHH
Q psy10988 1727 LKEVNNGGKVDKCLVTNMIVNFLTAPS---RPSRHQALQIL 1764 (1857)
Q Consensus 1727 L~~~~~egKVDK~LVkNLlIgyf~tP~---a~~R~EvLrLI 1764 (1857)
|.-+..-+|--+.|-|.||=-|=.-+. ......||.-+
T Consensus 559 ls~D~ar~Kp~~nLTKSLLniyEkqlQ~dp~p~~tSIMsYL 599 (861)
T PF15254_consen 559 LSVDSARCKPGNNLTKSLLNIYEKQLQHDPAPAHTSIMSYL 599 (861)
T ss_pred ccccccccCCcchhHHHHHHHHHHhhcCCCCCccchHHHHH
Confidence 555556777788888888877644332 33456666544
No 233
>KOG1899|consensus
Probab=67.66 E-value=4.3e+02 Score=35.53 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=41.6
Q ss_pred cccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 76 TEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTE 155 (1857)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEn 155 (1857)
+..|..++|. .|+|..|.+.+..|..- +..+.-++..|-.+......+-+.|+--+.+...++...++
T Consensus 93 s~~p~~~~~s-----~~~~~~yQerLaRLe~d-------kesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEE 160 (861)
T KOG1899|consen 93 SPSPSMSTVS-----CPEYPEYQERLARLEMD-------KESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEE 160 (861)
T ss_pred ccCCCCCCcc-----CCcchHHHHHHHHHhcc-------hhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence 4445545543 47888888777766543 33333334343333333332222222222223333333333
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhH
Q psy10988 156 HNRFLQEEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 156 ekk~lqErL~~LedK~~~L~eEIe~ 180 (1857)
.....-=+..+|+-++-.|-.++..
T Consensus 161 mLQqellsrtsLETqKlDLmaevSe 185 (861)
T KOG1899|consen 161 MLQQELLSRTSLETQKLDLMAEVSE 185 (861)
T ss_pred HHHHHHHhhhhHHHHHhHHHHHHHH
Confidence 2222222235555555555555555
No 234
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.29 E-value=3.6e+02 Score=34.22 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=71.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHh
Q psy10988 1589 ASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKN 1668 (1857)
Q Consensus 1589 As~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ 1668 (1857)
...-.+..|..|+.++..+..++.++...+...--++....+.+..+. .+...+-. .-+..+...+
T Consensus 279 ~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~-----~~~~~e~~--~~~~~~~~~~------- 344 (458)
T COG3206 279 REVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELR-----QQIAAELR--QILASLPNEL------- 344 (458)
T ss_pred hHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHH-----HHHHHHHH--HHHHhchhHH-------
Confidence 334445679999999988888888888777666555555444444444 21111111 1222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 1669 NELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN 1731 (1857)
Q Consensus 1669 ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~ 1731 (1857)
+-++....+|..++...+..+. .+-..+.++.+|.-++.....++..+..|...+.
T Consensus 345 ~~l~~~~~~L~~~~~~l~~~~~-------~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~ 400 (458)
T COG3206 345 ALLEQQEAALEKELAQLKGRLS-------KLPKLQVQLRELEREAEAARSLYETLLQRYQELS 400 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------hchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333333333322 2335667777999999999999999999999887
No 235
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=66.29 E-value=4.2e+02 Score=34.93 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=79.7
Q ss_pred HHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhh---hhHHh-----hhhHHHHHHHHH
Q psy10988 1532 NQNTLYNENERLKQHLLKTEEDNTSELVKAEQTI-QDLHVKLREAEERVKSSATA---YTSAS-----VRSNQQVEALTS 1602 (1857)
Q Consensus 1532 Ke~kl~~ELERLR~HLlE~EesyTqEal~aE~r~-kELr~RL~elEEkl~~SS~A---~tsAs-----~ra~qQVEsLQ~ 1602 (1857)
...++..|..||..++-..=+--+.=.+.-+.+. ..|+++...+|..++.+-.+ .+++. .++..--+...+
T Consensus 161 ~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee 240 (531)
T PF15450_consen 161 DSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEE 240 (531)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444333333333333333 36788888888888766221 11111 111111144455
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10988 1603 QVKSLTEQKEKL----QEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTL 1678 (1857)
Q Consensus 1603 Ql~~Le~QRDee----q~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sL 1678 (1857)
++..+..+++-. +..-+-..+++++...++.-|..-+++-|..=++-+.+ .+.+|+.+..-+..++..+
T Consensus 241 ~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~a-------E~kaR~~k~~~e~sk~eeL 313 (531)
T PF15450_consen 241 RLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNA-------EQKARDAKEKLEESKAEEL 313 (531)
T ss_pred HHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHhHHHHhhHHHH
Confidence 666666676622 22334455677777777777776655555555544322 2334444444455555555
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy10988 1679 QHQLQEARESLSAAGRL 1695 (1857)
Q Consensus 1679 Q~QLeEAee~L~aAsRL 1695 (1857)
...|-++=+++..|..+
T Consensus 314 ~~~L~~~lea~q~agkl 330 (531)
T PF15450_consen 314 ATKLQENLEAMQLAGKL 330 (531)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 55665555554444433
No 236
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.69 E-value=2.6e+02 Score=32.36 Aligned_cols=37 Identities=32% Similarity=0.311 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy10988 1651 AQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARE 1687 (1857)
Q Consensus 1651 ~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee 1687 (1857)
......|+.++.......+.|...+..|+.++.+++.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 237
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.35 E-value=2.9e+02 Score=32.71 Aligned_cols=107 Identities=25% Similarity=0.365 Sum_probs=83.7
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh---cc--ccch-h-HhH-hHHHHHHHHHH
Q psy10988 588 ERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES---KD--QVDD-S-IEK-TLRNEIQELHA 659 (1857)
Q Consensus 588 ~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~---~~--~~~d-~-ee~-~l~~~i~el~~ 659 (1857)
.-|+..+..+..++.+++..+++....++.++.++..+......+..+-+. .+ .|+. + +++ .|++.+..+..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999998888888877665 11 1211 1 111 77788888777
Q ss_pred hhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 660 KLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 660 rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
-+....+.+..|...-.+|+.+|.+++...+.+-.
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778877777777888888887777776655
No 238
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=65.14 E-value=1.1e+02 Score=34.34 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=55.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHHhh
Q psy10988 89 ELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVS-----------YQLEEKAIEISQLTEHN 157 (1857)
Q Consensus 89 ~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLs-----------keLnEl~~eIr~lEnek 157 (1857)
.|||.+-..-+-+..+-.........+..+..+...|..++...+...+... ..-.++...|..++...
T Consensus 26 ~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~ 105 (158)
T PF09744_consen 26 GLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEEN 105 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998888888888888888888888888888888888887776322222 33334444444444444
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10988 158 RFLQEEMQSLKDKLRD 173 (1857)
Q Consensus 158 k~lqErL~~LedK~~~ 173 (1857)
+.+...++.+.+...+
T Consensus 106 r~L~~~~~~~~~q~~r 121 (158)
T PF09744_consen 106 RQLELKLKNLSDQSSR 121 (158)
T ss_pred HHHHHHhhhhhhhccc
Confidence 4444444444443333
No 239
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.60 E-value=3.7e+02 Score=33.72 Aligned_cols=136 Identities=21% Similarity=0.171 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHH
Q psy10988 156 HNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVK 235 (1857)
Q Consensus 156 ekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~K 235 (1857)
.+.--+.++..|.....+|..++.. ..+++-..+....-+|..+...+++. .-.+
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~-------------~~~vf~k~k~~~q~LE~li~~~~EEn------------~~lq 147 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFH-------------VREVFMKTKGDIQHLEGLIRHLREEN------------QCLQ 147 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-------------HHHHHHHhcchHHHHHHHHHHHHHHH------------HHHH
Confidence 3334455566666666677777766 45577777777777777888888888 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 236 EELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSG----KLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 236 eeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sd----k~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
-.++.+..+..+..+.-..+..+++.....++.+..++...-.. +..+..-+..++++|.++.-++.++=+--.+.
T Consensus 148 lqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~ 227 (401)
T PF06785_consen 148 LQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDM 227 (401)
T ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888999999999998888888887665333 22333347777777777776666665554444
Q ss_pred hhccc
Q psy10988 312 TDNDN 316 (1857)
Q Consensus 312 qqe~E 316 (1857)
.....
T Consensus 228 ~e~~p 232 (401)
T PF06785_consen 228 KESMP 232 (401)
T ss_pred hhcCC
Confidence 44333
No 240
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.39 E-value=1e+02 Score=32.81 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=38.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 90 LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 90 ~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
+.|.+...-..|..+..++..+..++..+..++.+.+.-+.++..
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667888888888888888888888888888888888888888877
No 241
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.81 E-value=56 Score=37.43 Aligned_cols=148 Identities=26% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCCcchhhhhhhhhHHHhhhccchhhhhHhhhceeeeccccccCCCCCcccchhhhhhhhhhhccHHHHHHHHHHHH
Q psy10988 524 SSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIE 603 (1857)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 603 (1857)
++|.||.-+...+ .||.-.+.--+.-.|||=.=.-.+-.|| ..++...----++.|..-=.|+.+-.-+.+
T Consensus 27 ~PHF~pL~~~~e~--------~REg~A~Glm~~f~~l~e~v~~l~idd~-~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k 97 (190)
T PF05266_consen 27 SPHFSPLQEFKEE--------LREGMAVGLMVTFANLAEKVKKLQIDDS-RSSFESLMKTLSELEEHGFNVKFLRSRLNK 97 (190)
T ss_pred CCCChhhhcCcHH--------hhhHHHHHHHHHHHHHHHHHHHcccCCc-HHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q ss_pred H---HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhH
Q psy10988 604 L---KKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDG 680 (1857)
Q Consensus 604 ~---k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~ 680 (1857)
| |....+....+|+++.++..- .++-+.++..|.+|..++.+.....+.+...|...+.
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~------------------~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ 159 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEK------------------EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDK 159 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH------------------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHhhhhhhh
Q psy10988 681 KYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 681 ~~~eLk~~~e~~e~k~e~ 698 (1857)
+++.|+.+.+.+...+++
T Consensus 160 ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
No 242
>KOG0804|consensus
Probab=63.37 E-value=2.2e+02 Score=36.76 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH
Q psy10988 203 AELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLE 282 (1857)
Q Consensus 203 ~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~ 282 (1857)
++|++.+..+.....+. +..+.+...++.+.+...++..++..++.+..+++...+..-..+.++..-
T Consensus 347 sqlen~k~~~e~~~~e~------------~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~v 414 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEA------------DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDV 414 (493)
T ss_pred HHHHhHHHHHHHHHHHH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35555555555555555 555555666677777777777777777777777776666555555544444
Q ss_pred HHHHHH
Q psy10988 283 QDAMVK 288 (1857)
Q Consensus 283 leaELq 288 (1857)
+...++
T Consensus 415 w~~kl~ 420 (493)
T KOG0804|consen 415 WRGKLK 420 (493)
T ss_pred HHHHHH
Confidence 444333
No 243
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=62.75 E-value=1.4e+02 Score=32.44 Aligned_cols=91 Identities=19% Similarity=0.339 Sum_probs=58.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHH---HHH--HHHHHHHHHHHHhhHHHH
Q psy10988 90 LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID---DEKSVS---YQL--EEKAIEISQLTEHNRFLQ 161 (1857)
Q Consensus 90 ~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~---kEKeLs---keL--nEl~~eIr~lEnekk~lq 161 (1857)
+.|++...-.++..|..+++.+-.++..+.+++.+.+.-+.++-. +..-|. .-| -+...-+..++..+.+++
T Consensus 4 lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le 83 (119)
T COG1382 4 LPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLE 83 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHH
Confidence 458888888999999999999999999999999999888888877 211111 000 022333344445555555
Q ss_pred HHHHHHHHHHhhhhHhhhH
Q psy10988 162 EEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 162 ErL~~LedK~~~L~eEIe~ 180 (1857)
-++..|+.+..++.+++..
T Consensus 84 ~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554
No 244
>KOG0982|consensus
Probab=62.31 E-value=4.5e+02 Score=33.95 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 1503 RERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSS 1582 (1857)
Q Consensus 1503 ~ERdklel~LkqlQ~E~eelq~E~~~lrEKe~kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~S 1582 (1857)
..|..+.-.+..++.+++++..-..-..|+..++..|.-.|-+.....|+.|-.--+-+++.+.+=..|-.++.-+
T Consensus 215 e~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k---- 290 (502)
T KOG0982|consen 215 EERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIK---- 290 (502)
T ss_pred chhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 3566667778888999988877777777778888888888876555566666555566666666666666666655
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q psy10988 1583 ATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELN 1662 (1857)
Q Consensus 1583 S~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~ 1662 (1857)
.-..+.-+++.+|.+++.+..+-. . .|-..++|+-|. .=+.+++......++.++.++-
T Consensus 291 ------~eReasle~Enlqmr~qqleeent----e-------lRs~~arlksl~----dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 291 ------KEREASLEKENLQMRDQQLEEENT----E-------LRSLIARLKSLA----DKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHHH----HHHhhhhhhHHHHHHHHHHHHH
Confidence 334456777777777765544422 2 333344444443 2344555444555555555554
No 245
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=61.87 E-value=3.8e+02 Score=36.66 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=20.0
Q ss_pred hhchHHHHHhHH----------HhHHHHHHHHHHHHHhh
Q psy10988 827 NENIEASNHKIQ----------QLTQETDTLKAELVAQA 855 (1857)
Q Consensus 827 ~~~~e~~qkkik----------dL~~Ele~l~~~L~e~~ 855 (1857)
..+||.|+..|+ +|..-.|.|+.++..+|
T Consensus 648 k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~ 686 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKAS 686 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC
Confidence 567777777777 67777777777774333
No 246
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=60.41 E-value=6.1e+02 Score=34.88 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=43.1
Q ss_pred HHHHHhhhhhHh----------HHHHHHHHHh-hcccCCCCCccccccccc--------cccccccccchHHHHHHHHHH
Q psy10988 44 SEAYDMLQNEYD----------DLKQKFDEVV-NRTKSDNGNQTEVPTTST--------VRNGFELMPNVEDYNEKIRAL 104 (1857)
Q Consensus 44 ~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~e~l~ekl~eL 104 (1857)
.+.++-|..|+| -|+.||+-+- .-.|...+||.--|.-+- +-.+|.-.|||-.++.++..|
T Consensus 461 ~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~L 540 (762)
T PLN03229 461 NEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDML 540 (762)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH
Confidence 345555555544 4777777553 223333456666665543 345677889999999999999
Q ss_pred HHHHH
Q psy10988 105 NEEVS 109 (1857)
Q Consensus 105 neqi~ 109 (1857)
++.+.
T Consensus 541 k~~~~ 545 (762)
T PLN03229 541 NEFSR 545 (762)
T ss_pred HHHHH
Confidence 98885
No 247
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.31 E-value=1.5e+02 Score=35.95 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 257 TLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASL 301 (1857)
Q Consensus 257 keIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~L 301 (1857)
.+|..++.++++++++..+-+=.+..+++-++.-+.+++.-....
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~ 62 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY 62 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666666655544444444444444444444333333
No 248
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=60.24 E-value=3.4e+02 Score=31.87 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=5.7
Q ss_pred HHHHHHhhhhHhhhH
Q psy10988 166 SLKDKLRDLDENVTV 180 (1857)
Q Consensus 166 ~LedK~~~L~eEIe~ 180 (1857)
.|+..+.....+++.
T Consensus 14 LLKqQLke~q~E~~~ 28 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQ 28 (202)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 249
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=59.28 E-value=44 Score=32.98 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=53.8
Q ss_pred HHhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy10988 1141 NFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLN 1207 (1857)
Q Consensus 1141 n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le 1207 (1857)
+.+-++|+.+|..|.+-..+ |+.-|..++..++.+.++...++.++-.+........++++
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~------Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQE------WQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999 99999999999999999999888888877777777766666
No 250
>KOG0804|consensus
Probab=59.07 E-value=2.2e+02 Score=36.73 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy10988 264 ADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDN 316 (1857)
Q Consensus 264 ~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E 316 (1857)
.++.+.++.++....+...+..+.+.+++...-++..+...+.++..++.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666655555
No 251
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.63 E-value=1.8e+02 Score=35.42 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 292 SKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 292 keveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
.++..+......+...++.+...-. .+.-++...+..+..++..+..-...++.+..++..+++.|+.-.....
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rq----Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQ----KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH----HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444555555555554444 4455566666666667777766666666666666666666665544443
No 252
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.08 E-value=5.4e+02 Score=33.53 Aligned_cols=120 Identities=22% Similarity=0.210 Sum_probs=51.3
Q ss_pred HHHHhhhhhHhHHHHHHHHHhhcccCCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy10988 45 EAYDMLQNEYDDLKQKFDEVVNRTKSDNGNQTEVPTTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSR--- 121 (1857)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~E--- 121 (1857)
-.|+.+..+.+.++...++.-+ -++... ...-|.+.+-+|- ++.+.+++..+...+.............
T Consensus 116 ~~l~e~~~El~~l~~~l~~l~~-~~~~~~--~~~~~~~~l~~~~-----~~sL~ekl~lld~al~~~~~~~~~~~~~fl~ 187 (511)
T PF09787_consen 116 IRLQELDQELRRLRRQLEELQN-EKSRIL--SDESTVSRLQNGA-----PRSLQEKLSLLDEALKREDGNAITAVVEFLK 187 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhccC--chhHHHHHHHHHH-----HhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 3455667777777777766521 111111 1111112222221 1666666666666555444433333322
Q ss_pred -HHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q psy10988 122 -IEELEDKLQQKIDDEKSVS--YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLD 175 (1857)
Q Consensus 122 -IeeLEakLqelK~kEKeLs--keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~ 175 (1857)
+...+...+. +..... ..+..+...+..+...+..+.-.++..+.....++
T Consensus 188 rtl~~e~~~~~---L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 188 RTLKKEIERQE---LEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222222222 222222 33444444555555555555544444444444433
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.94 E-value=3.7e+02 Score=31.58 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q psy10988 394 LNEKVSELQT 403 (1857)
Q Consensus 394 Lks~Ie~LEg 403 (1857)
+-..|+.++|
T Consensus 164 yg~~i~~~~~ 173 (251)
T PF11932_consen 164 YGRTIEVYQG 173 (251)
T ss_pred hCCceeEEEE
Confidence 3344444333
No 254
>KOG4809|consensus
Probab=57.88 E-value=5.9e+02 Score=33.87 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=74.4
Q ss_pred HhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCch
Q psy10988 155 EHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASD 232 (1857)
Q Consensus 155 nekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d 232 (1857)
.+|.....+.+.|.++...+..++.. ....+. ...-.++.+.......+|..++=+++.+.+++ .
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~e-ke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec------------~ 397 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTE-KESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEEC------------S 397 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH------------H
Confidence 34444444444455554444444444 333333 44445555666667777888888888888888 5
Q ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 233 DVKEELEKLVVEK------QELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQ 306 (1857)
Q Consensus 233 ~~KeeLe~lreE~------~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~e 306 (1857)
.+...|-++.... .+....|.+++..++.++........+..++-.-...+.++...-.+++.+++....++.-
T Consensus 398 kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnk 477 (654)
T KOG4809|consen 398 KMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNK 477 (654)
T ss_pred HHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhh
Confidence 5554444433222 1234455555555555555555555555444444445555544444444444444444444
Q ss_pred Hhhh
Q psy10988 307 ELEG 310 (1857)
Q Consensus 307 elE~ 310 (1857)
.+..
T Consensus 478 kvaN 481 (654)
T KOG4809|consen 478 KVAN 481 (654)
T ss_pred HHhh
Confidence 4333
No 255
>PHA03190 UL14 tegument protein; Provisional
Probab=57.80 E-value=2.2e+02 Score=33.03 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=23.3
Q ss_pred hcCCCCCCCC----CCCcHHHHHHHHHHhhcCCCCCCCCC
Q psy10988 1778 IGLEPSQAFN----PNQSLSEAFIQFLESESSPRSKAQSS 1813 (1857)
Q Consensus 1778 lGL~~~~~s~----~neSfSelFVkFLEtES~p~~p~~l~ 1813 (1857)
+++.-++++. .+.-=+.|.++|++.+..|++-.|+|
T Consensus 127 i~l~~~~~~d~~d~ld~ede~LL~kW~Le~ap~~~~~~~~ 166 (196)
T PHA03190 127 IALHIPADEDRRDSLDCEEDDLLLKWQLEGANPPSLLPIP 166 (196)
T ss_pred hcccCCCCcccccccCccHHHHHHHHHHccCCCCccCCCC
Confidence 4555444443 34445689999999888776666655
No 256
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=57.71 E-value=4.2e+02 Score=32.15 Aligned_cols=80 Identities=29% Similarity=0.372 Sum_probs=50.7
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHhHHhhhhhhh--------------hhHHHHH
Q psy10988 1046 YTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQLDTYNAKIT--------------HAALVEQ 1110 (1857)
Q Consensus 1046 ~~~~~~e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~~~~~n~k~~--------------~~~~~~~ 1110 (1857)
|..+-+-+..|-.+ .--++..+ |.+++.| ..++..|+.++++.||||. |-..|-.
T Consensus 50 ~~~~i~~le~~~~~----~l~~ak~e------Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~ 119 (258)
T PF15397_consen 50 YRTAIDILEYSNHK----QLQQAKAE------LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA 119 (258)
T ss_pred HHHHHHHHHccChH----HHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34455555554333 44446667 8888888 8899999999999999984 1122222
Q ss_pred -HhhhhhhhhcchHHHHHHHHhhhHHHHH
Q psy10988 1111 -ELGEMKNQMQTLEYEKQELLKQIQEESI 1138 (1857)
Q Consensus 1111 -~~~~~~~~~~~le~~k~~L~~e~ed~~i 1138 (1857)
-+..+..|+ .+.|..-+.|++|+.-
T Consensus 120 vqIa~L~rql---q~lk~~qqdEldel~e 145 (258)
T PF15397_consen 120 VQIANLVRQL---QQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344455544 4556666777777765
No 257
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.98 E-value=1.8e+02 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=35.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 90 LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 90 ~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
-+|.+..+...+..+..+++.+...+..+...+.++..-+..++.
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~ 48 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEE 48 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888888888888888777766665
No 258
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.80 E-value=96 Score=37.98 Aligned_cols=15 Identities=47% Similarity=0.505 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhccC
Q psy10988 509 ISKLKTQLEAAQQGT 523 (1857)
Q Consensus 509 ~~~~~~~~~~~~~~~ 523 (1857)
|.+||-||+.-+...
T Consensus 235 v~klk~qLee~~~~~ 249 (302)
T PF09738_consen 235 VRKLKLQLEERQSEG 249 (302)
T ss_pred HHHHHHHHHHHHhcc
Confidence 689999998765443
No 259
>PF13166 AAA_13: AAA domain
Probab=54.62 E-value=6.6e+02 Score=33.45 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=13.8
Q ss_pred cchhHHHHHHHhhHHHHh-----chheecCchH
Q psy10988 443 CSEFEKTIVELKSQEELL-----KQALIDKENE 470 (1857)
Q Consensus 443 v~eEy~~AVE~~~Lee~L-----~~~VVd~~de 470 (1857)
.+-.++..|-. +|-..+ .++||=+++-
T Consensus 540 LD~~~~~~v~~-~l~~~~~~~~~~QviIlTHn~ 571 (712)
T PF13166_consen 540 LDHNRRFGVAS-RLKEEIKNSKFRQVIILTHNL 571 (712)
T ss_pred CCHHHHHHHHH-HHHHHhhcCCcceEEEEeCcH
Confidence 34455555555 555553 4555555443
No 260
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=53.13 E-value=3.2e+02 Score=29.30 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhh
Q psy10988 844 TDTLKAELVAQA 855 (1857)
Q Consensus 844 le~l~~~L~e~~ 855 (1857)
.+++...|...+
T Consensus 91 ~~~~~~~l~~~~ 102 (202)
T PF01442_consen 91 AEELKERLEARA 102 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 261
>PRK10698 phage shock protein PspA; Provisional
Probab=52.70 E-value=4.4e+02 Score=30.89 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=82.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-----ccccchh--HhH-hHHHHHHHHHHh
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-----KDQVDDS--IEK-TLRNEIQELHAK 660 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-----~~~~~d~--ee~-~l~~~i~el~~r 660 (1857)
-|+.-+..|.+.+.+++..++.....+|.++.++..+...-.++..+-.. .+.||-. .++ .....+..|..-
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~ 107 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHE 107 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999998777777666544 2233322 122 678888888888
Q ss_pred hhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 661 LINVEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 661 l~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
+........+|...-.+|+.++.+.+.+-+.|-.
T Consensus 108 ~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 108 VTLVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877777655
No 262
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.35 E-value=6.2e+02 Score=32.46 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy10988 1634 NLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKV 1713 (1857)
Q Consensus 1634 NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeea 1713 (1857)
+++..++.+|.+..| .+++..++.... +-.+.+|.+||+.|...++-. +=...+..+..++-|+....++
T Consensus 245 e~~~~~~~LqEEr~R-----~erLEeqlNd~~---elHq~Ei~~LKqeLa~~EEK~--~Yqs~eRaRdi~E~~Es~qtRi 314 (395)
T PF10267_consen 245 EYQFILEALQEERYR-----YERLEEQLNDLT---ELHQNEIYNLKQELASMEEKM--AYQSYERARDIWEVMESCQTRI 314 (395)
T ss_pred HHHHHHHHHHHhHHH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHH--HHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444544443 466777775444 357788999999998777754 4455567777777777777777
Q ss_pred HHHH
Q psy10988 1714 NQLM 1717 (1857)
Q Consensus 1714 eil~ 1717 (1857)
..++
T Consensus 315 sklE 318 (395)
T PF10267_consen 315 SKLE 318 (395)
T ss_pred HHHH
Confidence 7666
No 263
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.05 E-value=3.4e+02 Score=29.42 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=46.7
Q ss_pred hcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 222 WGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASL 301 (1857)
Q Consensus 222 ~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~L 301 (1857)
.|-.+.+..++.. +........+.+-++.+=.....-......+...+-.+..++.++...+..++..+..++..+
T Consensus 14 ~G~~~~~~~~~~~----~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 14 RGYPSDGLLFDSA----EESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred CCCCCCCccCccc----ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444333 222334445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhhhhhccc
Q psy10988 302 KQKEQELEGWTDNDN 316 (1857)
Q Consensus 302 Ee~~eelE~Lqqe~E 316 (1857)
.........+.....
T Consensus 90 ~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 90 ASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555533333
No 264
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.97 E-value=73 Score=39.05 Aligned_cols=76 Identities=26% Similarity=0.355 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 236 EELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 236 eeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
..+..+..++......+...+.++..++..+..+...++....++..+..++......+.-...-+.-+..+..+|
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 3333333333444444444444444444444444444444444444444444444444444444444444444444
No 265
>KOG4360|consensus
Probab=51.93 E-value=7.1e+02 Score=32.99 Aligned_cols=104 Identities=20% Similarity=0.222 Sum_probs=53.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q psy10988 198 IEKLKAELE-SVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADL-------TRV 269 (1857)
Q Consensus 198 iEelk~ELE-elEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql-------~~l 269 (1857)
++.++..+. ...+.++...-+. ....+++..+.++....++.+..+.++|+.++..+ ..+
T Consensus 192 ~~~keq~~y~~~~KelrdtN~q~------------~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 192 YEEKEQQLYGDCVKELRDTNTQA------------RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444 3445555544444 45555555555555555555555555555544433 333
Q ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10988 270 KEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTD 313 (1857)
Q Consensus 270 kqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqq 313 (1857)
..-+.....-...+.+|+.+++.++.+.++.+++-++++..+.-
T Consensus 260 ~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 260 DEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333334445555666666666666666666666655543
No 266
>KOG4593|consensus
Probab=51.41 E-value=8.1e+02 Score=33.51 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=8.3
Q ss_pred hhhhhhHHHHHHHHHHH
Q psy10988 1024 SKTSIIQTLEIQVKELQ 1040 (1857)
Q Consensus 1024 ~~~~~~~~l~e~~ee~q 1040 (1857)
++...|+.+.+++++.+
T Consensus 116 a~~~~e~~lq~q~e~~~ 132 (716)
T KOG4593|consen 116 ALKGQEEKLQEQLERNR 132 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344555555555554
No 267
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.17 E-value=2.2e+02 Score=32.02 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=11.5
Q ss_pred HhHhHHHHHHHHHhhHHhhhchh
Q psy10988 926 KCKQYEDKCIELESTLDAKLTDF 948 (1857)
Q Consensus 926 ~~k~~E~~~~e~~~k~~~~~~d~ 948 (1857)
..+..+.++.++..+++..++++
T Consensus 121 e~~~~~~ki~e~~~ki~~ei~~l 143 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTEIANL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555665555555444433
No 268
>PLN02939 transferase, transferring glycosyl groups
Probab=49.63 E-value=9.9e+02 Score=34.04 Aligned_cols=108 Identities=27% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhh-------hHH
Q psy10988 1523 LTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVR-------SNQ 1595 (1857)
Q Consensus 1523 q~E~~~lrEKe~kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~r-------a~q 1595 (1857)
-.|...+++-..-+..+++-|+..|.++.+..- =...+|....=|...|.++|-++..+-+- .++- .--
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 300 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEE-RVFKLEKERSLLDASLRELESKFIVAQED---VSKLSPLQYDCWWE 300 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhccchhHHHHHH
Confidence 334455555555667778888877777766221 12334444444555555555554333221 1111 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q psy10988 1596 QVEALTSQVKSLTEQKEKLQEKLY---QAEDVVQKHQASLTN 1634 (1857)
Q Consensus 1596 QVEsLQ~Ql~~Le~QRDeeq~qls---~sek~~rk~e~sL~N 1634 (1857)
-|++||.=+.-...|-|....-+. ..++.+-+.+++|.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE 342 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 466666666666666666554332 334444444555543
No 269
>PRK10869 recombination and repair protein; Provisional
Probab=49.04 E-value=7.7e+02 Score=32.60 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=5.1
Q ss_pred chheecCchH
Q psy10988 461 KQALIDKENE 470 (1857)
Q Consensus 461 ~~~VVd~~de 470 (1857)
..+|+|.++.
T Consensus 454 ~~li~DEpd~ 463 (553)
T PRK10869 454 PALIFDEVDV 463 (553)
T ss_pred CEEEEECCCC
Confidence 3555555444
No 270
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.93 E-value=3.7e+02 Score=28.89 Aligned_cols=12 Identities=8% Similarity=-0.141 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy10988 249 IEVIQNHETLIA 260 (1857)
Q Consensus 249 qeqi~qlEkeIa 260 (1857)
+..+..++++.+
T Consensus 85 ~~r~~k~~~dka 96 (107)
T PF09304_consen 85 ESRLLKAQKDKA 96 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 333333333333
No 271
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=48.83 E-value=33 Score=42.12 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHh
Q psy10988 390 ENKVLNEKVSELQT 403 (1857)
Q Consensus 390 E~kvLks~Ie~LEg 403 (1857)
-+.-|+++|..+|+
T Consensus 141 ~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 141 NITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHHhc
Confidence 33344444444433
No 272
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=48.44 E-value=78 Score=31.91 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH--HHHHhhhHHHHHHhhhhhhhhHHHHHHHH
Q psy10988 1010 RVQELDAKLAEEIASKTSIIQTLEIQVKELQ--DKLRSYTHVENELGQYRSKVYELEQIQAR 1069 (1857)
Q Consensus 1010 ~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q--~~~r~~~~~~~e~~q~r~k~ye~~~i~~~ 1069 (1857)
|+.+|-.+|-.++-++.++...++ .+ ++..+++.--+|++.||.+||+.+.-.+.
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k-----~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k 57 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYK-----HQKDEYEHKINSQIQEMQQIRQKVYELEQAHRK 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 273
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.34 E-value=1.6e+02 Score=36.07 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGN 373 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e 373 (1857)
++.+..+..++.+.-..++.+.+.++.++.+...++.+|.....-|++-+-
T Consensus 125 eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGl 175 (302)
T PF09738_consen 125 EETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGL 175 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCe
Confidence 555556666666777778889999999999999999999999999988777
No 274
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.22 E-value=1.3e+02 Score=34.95 Aligned_cols=8 Identities=25% Similarity=0.489 Sum_probs=3.9
Q ss_pred CCCCCchh
Q psy10988 226 DAWGASDD 233 (1857)
Q Consensus 226 ~~~~~~d~ 233 (1857)
-.|-++..
T Consensus 77 ~GWV~~~~ 84 (206)
T PRK10884 77 TAWIPLKQ 84 (206)
T ss_pred EEeEEHHH
Confidence 35655543
No 275
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=48.12 E-value=2.1e+02 Score=32.21 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=64.6
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHh
Q psy10988 585 AEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQ----QLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAK 660 (1857)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~----~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~r 660 (1857)
+.......++..+..++..|.-.....-..|+..|.++. .+.+++.+|..++.+ + .++-|.|...++.+++.
T Consensus 43 ~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~---L-e~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 43 SRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQ---L-EEENRQLELKLKNLSDQ 118 (158)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHhhhhhhh
Confidence 333444455556666666666666666666666677666 557788888888777 2 23446788777777777
Q ss_pred hhhHHHhhHHHHHHHHhhhHHHHHHHHhHH
Q psy10988 661 LINVEALVNQAQVEKQALDGKYEELKEKYE 690 (1857)
Q Consensus 661 l~~~E~~~~~l~~~k~kle~~~~eLk~~~e 690 (1857)
..-.++.-.++..+-..+-..+.++=+.+-
T Consensus 119 ~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 119 SSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665555544443
No 276
>KOG0239|consensus
Probab=47.57 E-value=9.1e+02 Score=32.99 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=19.0
Q ss_pred CCCCCCCCccccc-------CCCCchhhHHHHHhhhhh
Q psy10988 23 PELPLPLEPCQTT-------GSDNSDEISEAYDMLQNE 53 (1857)
Q Consensus 23 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 53 (1857)
|.++.++.-|... .++-...+..+.++++..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (670)
T KOG0239|consen 24 PKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK 61 (670)
T ss_pred cccccCccccccccccccccCCccccchhhhhhhhhcc
Confidence 4444444444443 445556778888888887
No 277
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=47.39 E-value=3.4e+02 Score=28.00 Aligned_cols=38 Identities=8% Similarity=0.230 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 97 YNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 97 l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
.-..|..+..+...+..++..+..++.+.+.-+.++..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566666666666666666666666666666554
No 278
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.86 E-value=8.7e+02 Score=32.55 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q psy10988 1520 TMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSA 1589 (1857)
Q Consensus 1520 eelq~E~~~lrEKe~kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~tsA 1589 (1857)
..+..++..++.+......++++|+-.+.|.+...-+.- =+....+-++||...|.-...+++||..-
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~g--E~e~L~~e~~rLsn~ekl~~~~~~a~~~L 234 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPG--EDEELEEERKRLSNSEKLAEAIQNALELL 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445556677788888889999988888887655432 23444555667777776666666655443
No 279
>PRK02119 hypothetical protein; Provisional
Probab=46.71 E-value=86 Score=31.00 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1556 SELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEK 1613 (1857)
Q Consensus 1556 qEal~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDe 1613 (1857)
+|...+++|+.+|..|+.-.|.-+-.-|.+++.. .++|..|+.+++.+..+...
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Q----q~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQ----QFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 4556788999999999999998887777755544 46677777777777665543
No 280
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.08 E-value=1.5e+02 Score=36.45 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=51.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLT 267 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~ 267 (1857)
+..+...+..+......|...+..+.++...+ ..++..++....+ ...++.++......+.
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l------------~~l~~~~~~~~~e-------~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKL------------AALQKEYEEAQKE-------KQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH-------HHHHHHHHHHHHhhhc
Confidence 45555555555555555555555555555555 4444444444444 4444444455555555
Q ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 268 RVKEEKEAEVSGKLEQDAMVKELKSKVETLEAS 300 (1857)
Q Consensus 268 ~lkqElE~l~sdk~~leaELqeLekeveElE~~ 300 (1857)
+...-+..+..+..++...+..|......+-+.
T Consensus 281 rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 281 RAEKLISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred cHHHHHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 555555555555666766666666666655443
No 281
>KOG3759|consensus
Probab=44.88 E-value=20 Score=45.26 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCcCC----cccCCCCCCcCCCCCCCCCCcccC
Q psy10988 1793 SEAFIQFLESESSPRSKAQSSTPVSRR----TSSTTSPLLFPESALPSLPQFSTM 1843 (1857)
Q Consensus 1793 SelFVkFLEtES~p~~p~~l~~~~~~s----t~s~~s~~~~~~~~l~~~~~f~~~ 1843 (1857)
-++||.||..|....+.||+|+-|+.| ..++.--++.+-+.+||...|+.+
T Consensus 239 LErFInFlQ~e~~e~s~~p~~~~g~hs~~~sg~kt~nG~~~tgs~~~t~~rfQqn 293 (621)
T KOG3759|consen 239 LERFINFLQDEVGENSNQPLQTRGGHSEPKSGGKTGNGSFRTGSSRPTTSRFQQN 293 (621)
T ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCCCccccccCCCCcccccccCCCccHHHHH
Confidence 378999999999999999988766632 234444556666778999999987
No 282
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.72 E-value=1.5e+02 Score=35.12 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=7.4
Q ss_pred CCCCchhhHHHHHh
Q psy10988 36 GSDNSDEISEAYDM 49 (1857)
Q Consensus 36 ~~~~~~~~~~~~~~ 49 (1857)
|.....-||.|+.-
T Consensus 15 GAsDvE~iSkalQr 28 (290)
T COG4026 15 GASDVEVISKALQR 28 (290)
T ss_pred ccchHHHHHHHHHH
Confidence 44445556666543
No 283
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.11 E-value=3.6e+02 Score=28.09 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=53.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1645 EKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKE 1724 (1857)
Q Consensus 1645 EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar 1724 (1857)
+.++++..+++++-..|-..|. .+-..+|+.|+... ..+-..+++..+.++..|..+++.+...|+..+
T Consensus 8 ~~~~ev~~~ve~vA~eLh~~Ys--sKHE~KV~~LKksY---------e~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 8 ESQKEVEKAVEKVARELHALYS--SKHETKVKALKKSY---------EARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888888 78888899998777 356677778888888888888887777776654
Q ss_pred H
Q psy10988 1725 A 1725 (1857)
Q Consensus 1725 ~ 1725 (1857)
.
T Consensus 77 ~ 77 (87)
T PF12709_consen 77 E 77 (87)
T ss_pred H
Confidence 4
No 284
>KOG0979|consensus
Probab=43.91 E-value=1.2e+03 Score=33.32 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q psy10988 746 DNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNK 780 (1857)
Q Consensus 746 d~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e 780 (1857)
...+++--+|.+.+.+-=+.+=.++++|.+.+--+
T Consensus 813 ~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e 847 (1072)
T KOG0979|consen 813 MSPATNKIEKSLVLMKELAEEPTTMDELDQAITDE 847 (1072)
T ss_pred ccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34444444555566666666667777777766443
No 285
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.72 E-value=7.1e+02 Score=30.64 Aligned_cols=59 Identities=29% Similarity=0.425 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 1671 LTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN 1731 (1857)
Q Consensus 1671 Lq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~ 1731 (1857)
++.++..++.++......+. ......+.....+.+.|..+++..+..++.+..++....
T Consensus 247 l~~~i~~l~~~i~~e~~~i~--~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLS--GGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666654333321 111224556677888999999999999999999998876
No 286
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.38 E-value=3.4e+02 Score=29.08 Aligned_cols=46 Identities=33% Similarity=0.459 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 322 NEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEME 367 (1857)
Q Consensus 322 leeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~E 367 (1857)
+.+-+..++..+..+...+..+...+..++..++.+.+.+..+..+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666655555443
No 287
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.02 E-value=2.2e+02 Score=30.32 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 1670 ELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN 1731 (1857)
Q Consensus 1670 kLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~ 1731 (1857)
+|.+...-|++-+-+-++- ...|.++|+.+...|-.+..+++.+..+...+-+|+..+.
T Consensus 9 KLraQ~~vLKKaVieEQ~k---~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIEEQAK---NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777776666555 7889999999999999999999999999999988887765
No 288
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=40.51 E-value=48 Score=40.83 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 285 AMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEK 364 (1857)
Q Consensus 285 aELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeel 364 (1857)
.+|..+...+..+...|..+...+..+...+. .....|..+...+..+...+..++..+...---+.-|+.++..+
T Consensus 77 s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls----~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 77 SELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS----DHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh----hhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 33333333333334444444444444444444 44555555555555555555555555555555455555555444
Q ss_pred HH
Q psy10988 365 EM 366 (1857)
Q Consensus 365 e~ 366 (1857)
|.
T Consensus 153 Es 154 (326)
T PF04582_consen 153 ES 154 (326)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 289
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=40.23 E-value=3.9e+02 Score=31.44 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=46.5
Q ss_pred HHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---H--HHHhhhHHHHHHHHH
Q psy10988 1630 ASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARES---L--SAAGRLSDQLNQKSQ 1704 (1857)
Q Consensus 1630 ~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~---L--~aAsRLs~QLrkKq~ 1704 (1857)
.+...||.+|-++|+.=++.-+ .--+++ -.|+.++.+|.-|-..+... . -.+..|..+|+.|.+
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~-lE~rLR----------~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEE 71 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQ-LERRLR----------TRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEE 71 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHH----------HHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 3455566677777666555511 111222 23555565555443332111 0 136778999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10988 1705 TIQELTEKVNQLMEEL 1720 (1857)
Q Consensus 1705 qIeeLkeeaeil~E~L 1720 (1857)
.|=.|+-++..-+..+
T Consensus 72 rILaLEad~~kWEqkY 87 (205)
T PF12240_consen 72 RILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988766665554
No 290
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=39.86 E-value=1e+03 Score=31.34 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 195 DEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQN 254 (1857)
Q Consensus 195 ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~q 254 (1857)
+..+..+..-|.+.++.+.+-+.+- ..++-+|.++...+..|++++..
T Consensus 389 ~k~lqnLqe~la~tqk~LqEsr~eK------------etLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 389 EKTLQNLQEALANTQKHLQESRNEK------------ETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455566677777777777777777 77777777777777777777654
No 291
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=39.54 E-value=7e+02 Score=29.38 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAK-LKTHSESLQKQLLEKEM 366 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEe-LQnE~EeLKsqLeele~ 366 (1857)
...+..+...+..+......-...+.. ...++..++.-|.-...
T Consensus 174 e~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~ 218 (247)
T PF06705_consen 174 ESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQ 218 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444444433 34444444444443333
No 292
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=38.97 E-value=6.8e+02 Score=29.09 Aligned_cols=112 Identities=18% Similarity=0.315 Sum_probs=73.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLT 267 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~ 267 (1857)
.-.+...+..++.+..++.+.+.-|++....+ ...+.-+.....-.......+..+..-+...+..+.
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL------------~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~ 126 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASL------------QQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLA 126 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777777777777766666666 555666666666666666666666666666666666
Q ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 268 RVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 268 ~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
....-...-+.+...+...|..-+..+..|...+..-+.+++..
T Consensus 127 ~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 127 NAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666554
No 293
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.86 E-value=2.2e+02 Score=29.34 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHh
Q psy10988 649 TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQM 692 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~ 692 (1857)
+.+.-+..|+++++..+.....+......++.++.+++.+|..|
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888888888888888888888765
No 294
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.70 E-value=2.5e+02 Score=27.88 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHH
Q psy10988 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVK 288 (1857)
Q Consensus 241 lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELq 288 (1857)
+..|-..|....+.+.+-|-.++..+..++..+..+...+.....++.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666665555555555554444333333333333
No 295
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=38.68 E-value=1.1e+03 Score=31.39 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEM 164 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL 164 (1857)
..|++..+.|...=+.+-.++.++
T Consensus 178 ~~l~d~~k~~sk~y~~k~~~E~~~ 201 (518)
T PF10212_consen 178 HKLHDVLKDLSKHYNQKASLEHRL 201 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555555554444433
No 296
>PLN02939 transferase, transferring glycosyl groups
Probab=37.75 E-value=1.4e+03 Score=32.55 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=32.4
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH
Q psy10988 232 DDVKEELEKLV---VEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQD 284 (1857)
Q Consensus 232 d~~KeeLe~lr---eE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~le 284 (1857)
..++..++-++ .++.+..+.++.++++-+-++..+..++..+-.-+.|..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (977)
T PLN02939 236 MLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLS 291 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 44444444443 334556667777777777777777777777766666655543
No 297
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=37.71 E-value=8.3e+02 Score=29.74 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh----cCCCchHHHHHHHhHhhccCC
Q psy10988 1709 LTEKVNQLMEELNKKEAKLKEVN----NGGKVDKCLVTNMIVNFLTAP 1752 (1857)
Q Consensus 1709 Lkeeaeil~E~L~kar~KL~~~~----~egKVDK~LVkNLlIgyf~tP 1752 (1857)
+......++..+..++..+.... -+|.|....+ -.|-+.+|
T Consensus 188 ~~a~~~~~~a~l~~a~~~l~~~~I~AP~dG~V~~~~~---~~G~~V~~ 232 (346)
T PRK10476 188 LVAQRAAREAALAIAELHLEDTTVRAPFDGRVVGLKV---SVGEFAAP 232 (346)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCEEECCCCcEEEeeec---CCCCCcCC
Confidence 33444455566666666666554 7888887544 46777777
No 298
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.34 E-value=6.7e+02 Score=28.50 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHH
Q psy10988 1654 LEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLS----AAGRLSDQLNQKSQTIQELTE 1711 (1857)
Q Consensus 1654 lerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~----aAsRLs~QLrkKq~qIeeLke 1711 (1857)
+.-++.+-...+.+.|.|+..+..++.-++-|..... +.+=|+..|......|++++.
T Consensus 93 L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 93 LAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444445566777777777777777777766533 223345555555666665554
No 299
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.20 E-value=2.3e+02 Score=33.05 Aligned_cols=30 Identities=13% Similarity=0.443 Sum_probs=16.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKL 350 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeL 350 (1857)
.+..+|..++..+..++..|...+..|..|
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555444
No 300
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=37.01 E-value=9.4e+02 Score=30.14 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHH-------------
Q psy10988 1596 QVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELN------------- 1662 (1857)
Q Consensus 1596 QVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~------------- 1662 (1857)
.|++|-+-++. +++...-..++--.++.|.+...+|. ++.+.+..++.+.+--..
T Consensus 36 EVEKLsqTi~E----LEEaiLagGaaaNavrdYqrq~~eln--------eEkrtLeRELARaKV~aNRVA~vvANEWKD~ 103 (351)
T PF07058_consen 36 EVEKLSQTIRE----LEEAILAGGAAANAVRDYQRQVQELN--------EEKRTLERELARAKVSANRVATVVANEWKDE 103 (351)
T ss_pred HHHHHHHHHHH----HHHHHHhcchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhhhhhhhhccccccc
Confidence 45555555544 55556666777778888888888877 666777777776654332
Q ss_pred --------HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1663 --------NSYAKNNELTQLISTLQHQLQEARES 1688 (1857)
Q Consensus 1663 --------e~~~k~ekLq~kv~sLQ~QLeEAee~ 1688 (1857)
.|....-=|+++|-.|+-+|.=|+..
T Consensus 104 nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERt 137 (351)
T PF07058_consen 104 NDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERT 137 (351)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667899998888888777664
No 301
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.00 E-value=1.1e+03 Score=32.03 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 145 EKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN----ESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 145 El~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln----~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
.+..+.....+-..|+++++..++.+.......+.. ...+.+ ..+-...-..+..+..++..+.....++...+
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~-fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~ 334 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNV-YRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY 334 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455556666778888888888888877777777 666554 11112222234445555555554444444333
No 302
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.92 E-value=1.4e+03 Score=31.98 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhHH--------HHHHHHhhccccc
Q psy10988 388 QQENKVLNEKVSELQTQLL--------SVEEALKKKENDL 419 (1857)
Q Consensus 388 q~E~kvLks~Ie~LEgf~~--------svk~l~k~~~~~~ 419 (1857)
+-++++++|+++.++.++- ||-.-++++|.|-
T Consensus 567 Kp~~nLTKSLLniyEkqlQ~dp~p~~tSIMsYLkkLE~~~ 606 (861)
T PF15254_consen 567 KPGNNLTKSLLNIYEKQLQHDPAPAHTSIMSYLKKLETNH 606 (861)
T ss_pred CCcchhHHHHHHHHHHhhcCCCCCccchHHHHHHhhcccc
Confidence 4567799999999988775 7666667787663
No 303
>KOG3091|consensus
Probab=36.38 E-value=6.5e+02 Score=33.12 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=3.9
Q ss_pred CcHHHHHHHH
Q psy10988 321 GNEQDIEALK 330 (1857)
Q Consensus 321 eleeqLeeLE 330 (1857)
++..++..+-
T Consensus 415 ~Lr~Kldtll 424 (508)
T KOG3091|consen 415 ELRAKLDTLL 424 (508)
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 304
>KOG0239|consensus
Probab=35.64 E-value=7.5e+02 Score=33.73 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=39.7
Q ss_pred hHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh-HhhhccCCCCcccccCcc-hhhhhhhh
Q psy10988 436 LNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS-EWGQTNEWGSPSSSDLNT-LREESGLL 498 (1857)
Q Consensus 436 LsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~-e~L~~nekGra~ff~Ld~-~~~~~~~~ 498 (1857)
-+|-++ -|..-...|.. =+.|+ -..++|.++-++ .++++ |+.=+|...+ .-+..|++
T Consensus 363 ~fdkVf-~p~~sQ~~VF~-e~~~l-v~S~lDGYnVCIFAYGQT---GSGKTyTM~G~~~~~~Gii 421 (670)
T KOG0239|consen 363 KFDKVF-GPLASQDDVFE-EVSPL-VQSALDGYNVCIFAYGQT---GSGKTYTMSGPTPEDPGII 421 (670)
T ss_pred eeeeec-CCcccHHHHHH-HHHHH-HHHHhcCcceeEEEeccc---CCCccccccCCCcccCCcc
Confidence 345555 47777777777 67777 456778988888 88888 7777777776 45555544
No 305
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.52 E-value=8.3e+02 Score=29.06 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHhhh
Q psy10988 1508 LALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEE 1552 (1857)
Q Consensus 1508 lel~LkqlQ~E~eelq~E~~~lrEKe~kl~~ELERLR~HLlE~Ee 1552 (1857)
|...|...+.++..+-..+-.+.-..+.+..++.+++....+|+.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555666666666655555554
No 306
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=34.76 E-value=1.1e+02 Score=38.12 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy10988 246 QELIEVIQNHETLIA 260 (1857)
Q Consensus 246 ~eLqeqi~qlEkeIa 260 (1857)
.+|.+.....++++.
T Consensus 58 ~qLrE~~et~~KE~~ 72 (370)
T PF02994_consen 58 NQLREQDETPEKELK 72 (370)
T ss_dssp ---------------
T ss_pred HHHHHhhhhhhhhhh
Confidence 344444444444443
No 307
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.67 E-value=1.7e+02 Score=28.91 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1561 AEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKL 1614 (1857)
Q Consensus 1561 aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDee 1614 (1857)
++.|+.+|..|+.-.|.-+-.-|.+++.. .++|..|+.+++.+..++...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Q----q~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAH----EMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
No 308
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=34.67 E-value=13 Score=47.66 Aligned_cols=117 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhH------hHHHHHHHHHHhhhhHHH
Q psy10988 593 EVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEK------TLRNEIQELHAKLINVEA 666 (1857)
Q Consensus 593 ~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~------~l~~~i~el~~rl~~~E~ 666 (1857)
++...++|+..||+.|.-...+--++|.++..-++.++.|..|.++ .|.|+|+| +=+.+|+.+-.||.-+|+
T Consensus 370 ~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~--RLedSE~RLr~QQ~eKd~qmksII~RL~~vEe 447 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQA--RLEDSEERLRRQQEEKDSQMKSIISRLMAVEE 447 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhh
Confidence 4556778999999999888888888888887778888888777766 58899988 777788888899888775
Q ss_pred hhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhhhHHHHHHHHhhhhhhh
Q psy10988 667 LVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDEKNTLD 732 (1857)
Q Consensus 667 ~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~~~e~i~kl~kEkk~l~ 732 (1857)
||+++--+|..-++- ...-||.+-|.+..+|....||.--...|.
T Consensus 448 -----------------ELrre~~~m~~~~~~----kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk 492 (495)
T PF12004_consen 448 -----------------ELRREHAEMQAVLDH----KQRIIDAQEKRIAALDAANSRLMSALTQLK 492 (495)
T ss_dssp ------------------------------------------------------------------
T ss_pred -----------------hhhhhHHHHhccccc----chHHHHHhhhhccccccccccccccccccc
Confidence 344444344332322 112244444444456666666655544443
No 309
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.66 E-value=4.8e+02 Score=26.08 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 99 EKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 99 ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
.++..++.++..+..++..+..++.++..-+.++..
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~ 40 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEK 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666666666666666666666655
No 310
>KOG2991|consensus
Probab=34.51 E-value=9.5e+02 Score=29.45 Aligned_cols=131 Identities=27% Similarity=0.339 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 195 DEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEE---LEKLVVEKQELIEVIQNHETLIAKLEADLTRVKE 271 (1857)
Q Consensus 195 ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~Kee---Le~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkq 271 (1857)
-..|..++.+|+...+.+++...++..|--.. .|..-+-- -.-+..|..+|-.... +-+|+.+.+.+.=-+.
T Consensus 176 nl~F~rlK~ele~tk~Klee~QnelsAwkFTP---dS~tGK~LMAKCR~L~qENeElG~q~s--~Gria~Le~eLAmQKs 250 (330)
T KOG2991|consen 176 NLFFLRLKGELEQTKDKLEEAQNELSAWKFTP---DSKTGKMLMAKCRTLQQENEELGHQAS--EGRIAELEIELAMQKS 250 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheeeecC---CCcchHHHHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHh
Confidence 34566777888888888888888883343221 23333322 2334666666666543 4567777777776666
Q ss_pred HHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHH
Q psy10988 272 EKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLA 341 (1857)
Q Consensus 272 ElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLE 341 (1857)
-.+-+.+....+..=+.+|...|+-....|--+++++... +.+|+.+.+..+.+.+-+.
T Consensus 251 ~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lket-----------r~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 251 QSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKET-----------RKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666665555555554 4444455555554444443
No 311
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.46 E-value=6e+02 Score=28.17 Aligned_cols=87 Identities=25% Similarity=0.341 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q psy10988 238 LEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNW 317 (1857)
Q Consensus 238 Le~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~ 317 (1857)
+..+..++.+|...+..+...+..++..+..+..... ...+...+..+..++..++.+++.++..-..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~------- 141 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLRSGSKP------- 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------
Confidence 3333444444444444444444444444433333321 1234444555555555555555555441111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q psy10988 318 GSSGNEQDIEALKKENEEIKEK 339 (1857)
Q Consensus 318 ~~~eleeqLeeLEkEIEELeee 339 (1857)
...+++..+...+......
T Consensus 142 ---vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 142 ---VSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred ---CCHHHHHHHHHHHHHHHHH
Confidence 2355666666665555443
No 312
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.45 E-value=6.1e+02 Score=27.20 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10988 1600 LTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQA-EKDNEIAQSLEFLQGELNNSYAKNNELTQLISTL 1678 (1857)
Q Consensus 1600 LQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~-EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sL 1678 (1857)
|+.+++....+...++.++....-+...+...+.....|++.|.. +.|..+=..++.+=-.-
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~q----------------- 67 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKV----------------- 67 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhc-----------------
Confidence 344444445555555555555555566666777777777777743 55555444444331111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 1679 QHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN 1731 (1857)
Q Consensus 1679 Q~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~ 1731 (1857)
-.++| -..+..+++-....|..|......++..+.+++..++.+.
T Consensus 68 --d~~e~------~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 68 --DKTKV------EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred --cHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2334455555667777777777777777777777777776
No 313
>KOG2264|consensus
Probab=33.79 E-value=1.2e+02 Score=39.64 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHhhHHhhhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHH
Q psy10988 928 KQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDR 1001 (1857)
Q Consensus 928 k~~E~~~~e~~~k~~~~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~ 1001 (1857)
|.++++|- +.+.+...|.++..++++|+++++++...+|+... .|-+-.-++.+|.-.+++++++++|-+
T Consensus 79 r~~~e~~R-I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~---~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 79 RILREQKR-ILASVSLELTELEVKRQELNSEIEEINTKIEELKR---LIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 33555554 45567778999999999999999999999999999 888888888888888888887776543
No 314
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.59 E-value=1.3e+02 Score=29.16 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1561 AEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQ 1615 (1857)
Q Consensus 1561 aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq 1615 (1857)
++.|+.+|..|+.-.|..+-..+.+++.. .++|..|+.+++.+........
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Q----q~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQ----QRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999999999998877777755544 4677778777777776655443
No 315
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.38 E-value=4.6e+02 Score=29.04 Aligned_cols=65 Identities=26% Similarity=0.419 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10988 98 NEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID--DEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKD 169 (1857)
Q Consensus 98 ~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~--kEKeLskeLnEl~~eIr~lEnekk~lqErL~~Led 169 (1857)
.+.+..+..++..++.++..+..++..|++++..+.. --. ++...|..++.++..+..++..|..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-------el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-------ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777888888888888888888887777766 322 3444444444555555555555554
No 316
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.21 E-value=1.3e+03 Score=30.53 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHhhhH
Q psy10988 1618 LYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARES-LSAAGRLS 1696 (1857)
Q Consensus 1618 ls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~-L~aAsRLs 1696 (1857)
+..++.++......|+|=. |...-.+-...+...+...| .=|...+..++.++++.... ...-+.|.
T Consensus 104 l~~~~~~L~~~F~~LA~~i-----le~k~~~f~~~~~~~l~~ll-------~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~ 171 (475)
T PRK10361 104 MINSEQRLSEQFENLANRI-----FEHSNRRVDEQNRQSLNSLL-------SPLREQLDGFRRQVQDSFGKEAQERHTLA 171 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455554433 43333333344555555555 45566666666666655432 11234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1697 DQLNQKSQTIQELTEKVNQLMEE 1719 (1857)
Q Consensus 1697 ~QLrkKq~qIeeLkeeaeil~E~ 1719 (1857)
.+++.....=..+..++..+...
T Consensus 172 ~qi~~L~~~n~~i~~ea~nLt~A 194 (475)
T PRK10361 172 HEIRNLQQLNAQMAQEAINLTRA 194 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444444444333
No 317
>KOG1937|consensus
Probab=32.59 E-value=1.3e+03 Score=30.39 Aligned_cols=221 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHH-------HHHHHHH-HHHHHHHHhhHHHHHHH
Q psy10988 95 EDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID--DEKSVS-------YQLEEKA-IEISQLTEHNRFLQEEM 164 (1857)
Q Consensus 95 e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~--kEKeLs-------keLnEl~-~eIr~lEnekk~lqErL 164 (1857)
..+-+.+..=.+.+..+..++......+..|-.+|+..+. ..+.+. ..+.... .+|..++.+..-..+++
T Consensus 282 erl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei 361 (521)
T KOG1937|consen 282 ERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEI 361 (521)
T ss_pred HHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H---HHHHHHhhhhHhhhHHHHHHhh-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHH
Q psy10988 165 Q---SLKDKLRDLDENVTVEDIKKAN-ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEK 240 (1857)
Q Consensus 165 ~---~LedK~~~L~eEIe~~de~Kln-~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~ 240 (1857)
+ .+..++.+-.+.+.. +-.+.. ...+..+.+-+.+...++-..-..-+++.-+. ....+.+
T Consensus 362 ~~~eel~~~Lrsele~lp~-dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~------------ns~se~L-- 426 (521)
T KOG1937|consen 362 ESNEELAEKLRSELEKLPD-DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQE------------NSESEAL-- 426 (521)
T ss_pred HhhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhccccC
Q psy10988 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQ--KEQELEGWTDNDNWG 318 (1857)
Q Consensus 241 lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe--~~eelE~Lqqe~E~~ 318 (1857)
.+.+..--.+.-..-+-...=..-..+=.++-.+-.++...=.+--.+..++..++..|.. +.+.+..| +
T Consensus 427 --~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~sl----E-- 498 (521)
T KOG1937|consen 427 --NRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSL----E-- 498 (521)
T ss_pred --hhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhH----H--
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q psy10988 319 SSGNEQDIEALKKENEEIKEKL 340 (1857)
Q Consensus 319 ~~eleeqLeeLEkEIEELeeeL 340 (1857)
.+.+++..+.++...+..+|
T Consensus 499 --kl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 499 --KLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
No 318
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.49 E-value=5.2e+02 Score=25.82 Aligned_cols=44 Identities=27% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Q psy10988 248 LIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELK 291 (1857)
Q Consensus 248 Lqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLe 291 (1857)
|..+|.++=..|+-++..+..++.....+......+..+...+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333333333333
No 319
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=32.33 E-value=9.6e+02 Score=28.88 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH---HHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHhhhhHhhhHHH
Q psy10988 108 VSQLKTKENELHSRIEELEDKLQQKID-DEKSVS---YQLEEKAIEISQLTEHNR-FLQEEMQSLKDKLRDLDENVTVED 182 (1857)
Q Consensus 108 i~eLqeK~~eL~~EIeeLEakLqelK~-kEKeLs---keLnEl~~eIr~lEnekk-~lqErL~~LedK~~~L~eEIe~~d 182 (1857)
|....+.++....+|+.||.+|...+. -..-+. ..|..+..+++.+-..=+ |++-+.. -..+
T Consensus 9 Vq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~-----a~~a-------- 75 (239)
T PF05276_consen 9 VQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRK-----AKEA-------- 75 (239)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH-----HHHH--------
Confidence 344445556666677777777777766 233332 555555555554322111 1111000 0011
Q ss_pred HHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 183 IKKANESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 183 e~Kln~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
......+...|+.....+..+++.|.-....+
T Consensus 76 -----q~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l 107 (239)
T PF05276_consen 76 -----QQEAQKAALQYERANSMHAAAKEMVALAEQSL 107 (239)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223345556666666677777776666666
No 320
>KOG1962|consensus
Probab=32.29 E-value=3.2e+02 Score=32.39 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 297 LEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLL 362 (1857)
Q Consensus 297 lE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLe 362 (1857)
++...+...++.+.+..+.+ ....+++...+.+..+..+.+.+....+.+-.++..++++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444445555555544444 444555555555555555555555555555555555555543
No 321
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.28 E-value=1.7e+02 Score=29.02 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 255 HETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 255 lEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
+.+.|+..+.+|..+-.+-+.+...-..+++-++.+.....+.+..+..+...++..
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444444444444444444444444444333333
No 322
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=32.05 E-value=6.3e+02 Score=31.26 Aligned_cols=95 Identities=26% Similarity=0.272 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy10988 1504 ERNELALRLQNLQEEK--TMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERV-- 1579 (1857)
Q Consensus 1504 ERdklel~LkqlQ~E~--eelq~E~~~lrEKe~kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl-- 1579 (1857)
.+.++..++....... +.+.+|+-.+-.| .-..-||.||++|+.+... .++. .--...||+=+=+.+
T Consensus 184 ~~~~l~~ri~~~~~~~d~~rl~qE~al~a~K-~DI~EEldRL~sHv~~~~~-------iL~~-~g~vGRkLDFl~QE~nR 254 (290)
T COG1561 184 YRERLVARLNEAQDQLDEDRLEQEVALLAQK-ADIAEELDRLKSHVKEFRN-------ILEK-GGPVGRKLDFLMQEFNR 254 (290)
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH-------HHhc-CCccchhHHHHHHHHhH
Confidence 3444444444433333 3555555555333 3456799999999999988 4422 223456666554443
Q ss_pred -------hhhhhhhhHHhhhhHHHHHHHHHHHHHH
Q psy10988 1580 -------KSSATAYTSASVRSNQQVEALTSQVKSL 1607 (1857)
Q Consensus 1580 -------~~SS~A~tsAs~ra~qQVEsLQ~Ql~~L 1607 (1857)
|+.+...|++....+--|+..++|++.+
T Consensus 255 EaNTl~SKS~~~~it~~~vElK~~IEqmREQVQNi 289 (290)
T COG1561 255 EANTLGSKSNAAEITAAVVELKVLIEQMREQVQNI 289 (290)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334478888889999999999998765
No 323
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=31.95 E-value=5.4e+02 Score=25.87 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhH
Q psy10988 650 LRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKY 689 (1857)
Q Consensus 650 l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~ 689 (1857)
|.+.+..+..+....+.....+......++..+...+.+|
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I 44 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQI 44 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544444444444444444
No 324
>PRK00736 hypothetical protein; Provisional
Probab=31.73 E-value=2.1e+02 Score=28.05 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1561 AEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEK 1613 (1857)
Q Consensus 1561 aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDe 1613 (1857)
+++|+.+|..|+.-.|.-+-.-|.+++.. .++|..|+.+++.+..+...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Q----q~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQ----WKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999988888877777654444 35667777777666665443
No 325
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=31.15 E-value=4.3e+02 Score=29.20 Aligned_cols=77 Identities=23% Similarity=0.246 Sum_probs=54.3
Q ss_pred HHHHhHhHHHHHHHHHhhHHhhhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHh
Q psy10988 923 IMEKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRK 1002 (1857)
Q Consensus 923 ~~~~~k~~E~~~~e~~~k~~~~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k 1002 (1857)
++++..|||-|+.-++.++......-+....-... +..| .+++-|..++||.+++..|..||....=-+|.|+|
T Consensus 13 Q~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~----ye~M--s~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsK 86 (129)
T PF15372_consen 13 QLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRR----YEQM--SVESLNQLLKQLEKEKRSLENQLKDYEWRLEQESK 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHH----Hhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999998888887743333332221111 2333 33455559999999999999999999888999988
Q ss_pred hhh
Q psy10988 1003 ILD 1005 (1857)
Q Consensus 1003 ~~~ 1005 (1857)
+--
T Consensus 87 Ayh 89 (129)
T PF15372_consen 87 AYH 89 (129)
T ss_pred HHH
Confidence 755
No 326
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=30.99 E-value=9e+02 Score=28.12 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhHH
Q psy10988 392 KVLNEKVSELQTQLL 406 (1857)
Q Consensus 392 kvLks~Ie~LEgf~~ 406 (1857)
.-++..|..++....
T Consensus 169 er~e~ki~~~ea~ae 183 (219)
T TIGR02977 169 EQYERRVDELEAQAE 183 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555666555544
No 327
>PRK12704 phosphodiesterase; Provisional
Probab=30.86 E-value=1.4e+03 Score=30.27 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=5.2
Q ss_pred hheecCchHH
Q psy10988 462 QALIDKENEL 471 (1857)
Q Consensus 462 ~~VVd~~dea 471 (1857)
-+|||+..++
T Consensus 243 d~iiddtp~~ 252 (520)
T PRK12704 243 DLIIDDTPEA 252 (520)
T ss_pred eEEEcCCCCe
Confidence 3555555553
No 328
>PRK04325 hypothetical protein; Provisional
Probab=30.48 E-value=2.3e+02 Score=28.20 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1560 KAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEK 1613 (1857)
Q Consensus 1560 ~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDe 1613 (1857)
.+++|+.+|..||.-.|.-+-.-|.+++.. .++|..|+.+++.|..+...
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Q----q~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQ----QQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 366788888899888888877777755544 35677777777766655443
No 329
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.27 E-value=7.6e+02 Score=27.05 Aligned_cols=95 Identities=18% Similarity=0.327 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhH-----------hHHHHHHHHHH
Q psy10988 591 DEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEK-----------TLRNEIQELHA 659 (1857)
Q Consensus 591 ~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~-----------~l~~~i~el~~ 659 (1857)
--+|+.+-.++..+...|..-.-.++.+|-.+. |..+--+.|+. ++|...- ..+.-+.+|.+
T Consensus 5 pp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~----E~~~al~Ele~---l~eD~~vYk~VG~llvk~~k~~~~~eL~e 77 (119)
T COG1382 5 PPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLK----EIEKALEELEK---LDEDAPVYKKVGNLLVKVSKEEAVDELEE 77 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc---CCcccHHHHHhhhHHhhhhHHHHHHHHHH
Confidence 345666666777777777776655555554332 22233333333 3333222 77888999999
Q ss_pred hhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHh
Q psy10988 660 KLINVEALVNQAQVEKQALDGKYEELKEKYEQM 692 (1857)
Q Consensus 660 rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~ 692 (1857)
|++.-|-+...|...-++++.++++|+..|-++
T Consensus 78 r~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 78 RKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888765
No 330
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.25 E-value=4.8e+02 Score=25.82 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLK 302 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LE 302 (1857)
..++..|++.+-.+..+++.....+..+-.+.......+...-.+...|..+++.+.+.++
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555554444444444444444444444444433
No 331
>PLN03188 kinesin-12 family protein; Provisional
Probab=30.08 E-value=2e+03 Score=32.00 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1667 KNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKL 1727 (1857)
Q Consensus 1667 k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL 1727 (1857)
...-|..+-++||-||-+.-++..||..|.=.|+..++...-.++++-.++..-.++-+.+
T Consensus 1174 er~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~ 1234 (1320)
T PLN03188 1174 ERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999898999999999999988887777777666665555554433
No 332
>PRK10698 phage shock protein PspA; Provisional
Probab=29.46 E-value=9.9e+02 Score=28.12 Aligned_cols=64 Identities=9% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1652 QSLEFLQGELNNSYAKNNELTQLISTLQH--QLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQL 1716 (1857)
Q Consensus 1652 aalerlr~qL~e~~~k~ekLq~kv~sLQ~--QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil 1716 (1857)
..+.+++..+.+++.+.+-|.++..+-+- ++.++-.++. +..-...++..+.-|..+..+++..
T Consensus 120 ~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~-~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 120 KEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK-LDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHHHHHHhHh
Confidence 34555555555555555555554433322 2211111111 1112235555666666666666554
No 333
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.09 E-value=3.3e+02 Score=30.44 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=41.7
Q ss_pred hhcCCCCCCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q psy10988 221 EWGNNDAWGA------SDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKV 294 (1857)
Q Consensus 221 ~~~~~~~~~~------~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekev 294 (1857)
-||+++.||. ..+.+..++.+.. .+..+...++.++-.-..+++.+...-.-=++-+..+.+++
T Consensus 29 ~~G~~~G~~~~~~~~LT~EQQa~~q~I~~----------~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI 98 (143)
T PRK11546 29 HWGGGHGMWQQNAAPLTTEQQAAWQKIHN----------DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEM 98 (143)
T ss_pred ccCCCCCCCccccccCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4899999885 3444444433333 34455566666666666666665443333333355555555
Q ss_pred HHHHHHHHHHHH
Q psy10988 295 ETLEASLKQKEQ 306 (1857)
Q Consensus 295 eElE~~LEe~~e 306 (1857)
..+...+.+++-
T Consensus 99 ~~Lr~kL~e~r~ 110 (143)
T PRK11546 99 ENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 334
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.81 E-value=1.8e+02 Score=29.31 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1670 ELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKL 1727 (1857)
Q Consensus 1670 kLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL 1727 (1857)
.+-..+..++.+|..|.+.+..--.+..-++.-+.+|..|++++....+.|.+.+.+.
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666677778888888887666555666777888899999999999999988877654
No 335
>PRK00295 hypothetical protein; Provisional
Probab=28.67 E-value=2.6e+02 Score=27.44 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1561 AEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEK 1613 (1857)
Q Consensus 1561 aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDe 1613 (1857)
++.|+.+|..|+.-.|.-+-.-|.+++.. .++|..|+.+++.+..+...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Q----q~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQ----QRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999988888877666654443 45667777777666555443
No 336
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.42 E-value=5.8e+02 Score=29.33 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 106 EEVSQLKTKENELHSRIEELEDKLQQKI 133 (1857)
Q Consensus 106 eqi~eLqeK~~eL~~EIeeLEakLqelK 133 (1857)
......+..+..+..+++.+...+..++
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~ 89 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELE 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 337
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.40 E-value=2.2e+02 Score=27.74 Aligned_cols=47 Identities=32% Similarity=0.584 Sum_probs=36.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHH
Q psy10988 587 KERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILR 633 (1857)
Q Consensus 587 ~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~ 633 (1857)
|.-+.+|+.+....+..++.+|.-++++..+|+.+|..|..+...++
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567788888888888888888888888888888888776665543
No 338
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.38 E-value=5.8e+02 Score=33.95 Aligned_cols=8 Identities=13% Similarity=-0.047 Sum_probs=4.4
Q ss_pred CCCccccc
Q psy10988 480 WGSPSSSD 487 (1857)
Q Consensus 480 kGra~ff~ 487 (1857)
.|+-+.|.
T Consensus 325 ~G~~i~F~ 332 (555)
T TIGR03545 325 NGEDYDFK 332 (555)
T ss_pred CCceEEcc
Confidence 46655554
No 339
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=27.95 E-value=8e+02 Score=32.57 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 328 ALKKENEEIKEKLAKQESTLAKLKTHSESL 357 (1857)
Q Consensus 328 eLEkEIEELeeeLEelerKLEeLQnE~EeL 357 (1857)
+++..+.-+.++|...+.++..-..+++.+
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 340
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.45 E-value=3.1e+02 Score=33.43 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.2
Q ss_pred ccccccc-ccccccccch
Q psy10988 78 VPTTSTV-RNGFELMPNV 94 (1857)
Q Consensus 78 ~~~~~~~-~~~~~~~~~~ 94 (1857)
|+.-|+| -|||..-|.+
T Consensus 81 v~ses~V~VngY~Vk~S~ 98 (269)
T PF05278_consen 81 VISESIVSVNGYQVKPSQ 98 (269)
T ss_pred ccccceeeECCEEEcHhH
Confidence 4555556 6888887754
No 341
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.44 E-value=9.6e+02 Score=27.30 Aligned_cols=49 Identities=12% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEW 371 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel 371 (1857)
..+-..++..+..+...++....-+...---.+-|.+.|......|+..
T Consensus 104 r~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 104 RERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333344444444444444444444444444444555555544444433
No 342
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.22 E-value=3e+02 Score=27.19 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 298 EASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQ 358 (1857)
Q Consensus 298 E~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLK 358 (1857)
++.+.+++..+..++.+.. .....+..+..+-......+...-.....++.+.+.++
T Consensus 4 ea~~~~Lr~rLd~~~rk~~----~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNS----VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333 33333333333333333333333333333333333333
No 343
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=26.49 E-value=1.2e+03 Score=28.00 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhh----cCCCchHHHHHHHhHhhccCC
Q psy10988 1716 LMEELNKKEAKLKEVN----NGGKVDKCLVTNMIVNFLTAP 1752 (1857)
Q Consensus 1716 l~E~L~kar~KL~~~~----~egKVDK~LVkNLlIgyf~tP 1752 (1857)
++..+..++..+.... -+|.|-... +-.|-+..|
T Consensus 191 ~~~~l~~a~~~l~~~~I~AP~~G~V~~~~---~~~G~~v~~ 228 (334)
T TIGR00998 191 AKERLKTAWLALKRTVIRAPFDGYVARRF---VQVGQVVSP 228 (334)
T ss_pred HHHHHHHHHHHhhCcEEEcCCCcEEEEEe---cCCCCEeCC
Confidence 3344444444444432 677775543 335666555
No 344
>PRK04406 hypothetical protein; Provisional
Probab=26.18 E-value=2.9e+02 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy10988 1560 KAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKE 1612 (1857)
Q Consensus 1560 ~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRD 1612 (1857)
.++.|+.+|..|+.-.|.-+-.-|.+++.. .++|..|+.+++.+..+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Q----q~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQ----QLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888877777654444 4567777777776655443
No 345
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.88 E-value=7.5e+02 Score=25.52 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhH
Q psy10988 108 VSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDE 176 (1857)
Q Consensus 108 i~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~e 176 (1857)
++++..+++...-.|.-|..++.++|.+-..++...+.+...-..+..+..-+.++-..-+++.+.|.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777777766444444444444444344444444444444444444444433
No 346
>KOG1924|consensus
Probab=25.62 E-value=76 Score=42.77 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=3.8
Q ss_pred HhhhHHHHH
Q psy10988 1692 AGRLSDQLN 1700 (1857)
Q Consensus 1692 AsRLs~QLr 1700 (1857)
|+.+..+++
T Consensus 476 A~e~~kk~~ 484 (1102)
T KOG1924|consen 476 AAELEKKFD 484 (1102)
T ss_pred HHHHHHHHH
Confidence 444444443
No 347
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=25.53 E-value=1.4e+02 Score=37.41 Aligned_cols=46 Identities=17% Similarity=0.440 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 649 TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
.|...|.++.+|+.+.|+...++...-..++..+..|...++|++.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888887777777777777888888888887
No 348
>KOG2412|consensus
Probab=25.21 E-value=7.8e+02 Score=32.81 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhhhhhccccccCCCCcchhhhhhhhhhhhhhhHHHHHhhHhHHHHHHHHHHHHHH----hhhhhhhHHHH
Q psy10988 1202 TQRKLNEELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEK----HLSEKYQFEKE 1277 (1857)
Q Consensus 1202 ~~~~le~~l~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~~El~k~~~~~e~e~~elq~ale~----~e~~~~r~~~e 1277 (1857)
.+++++-.-.+.++.+. ...|..+.+|..+ .+.-+-+..+.++.......+.++|-.+.. +...+-|.-.-
T Consensus 134 ~q~~~~~~~~~~~ki~~----~~~pea~~~~~~n-~e~~~l~~~~~e~~~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~ 208 (591)
T KOG2412|consen 134 NQRQTEIKSDIRAKILN----SPLPEANQEIETN-AENIRLVEKLSETRKEVKRRLLEEQNQVLQSLDTELQAIQREKQR 208 (591)
T ss_pred hhhhHhHHhhhhhhhhc----CCChHHHHHHHhh-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544556666666 5566555344443 333344456777777777777888887773 33333343334
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccchhHHHHHHhHHHHHHHHHHHHHh
Q psy10988 1278 ALELRTEDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVL 1342 (1857)
Q Consensus 1278 ~~q~~~~~~~~~l~ekee~~e~~r~~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~mq~~L~~E~~ 1342 (1857)
++|+|. .-++..+|-.+-+..+ +.|+.++|.-++|+..+....+
T Consensus 209 ~eqi~~--~~~~~e~kr~Eaerk~-------------------~~~qEe~Rqk~d~~~~~~eqek 252 (591)
T KOG2412|consen 209 KEQIRE--RKERSEEKREEAERKR-------------------RAHQEELRQKEDEEAELQEQEK 252 (591)
T ss_pred HHHHHH--HHHHHHhhhhhhHHHH-------------------HHHHHHHHHHHHHHHHHhHHHH
Confidence 445554 4456677778888888 9999999999888888774433
No 349
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=24.94 E-value=1.3e+03 Score=27.90 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=56.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHH----HH--HHHHHHHHHHHHHHHhhHHHH
Q psy10988 89 ELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID-DEKS----VS--YQLEEKAIEISQLTEHNRFLQ 161 (1857)
Q Consensus 89 ~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~-kEKe----Ls--keLnEl~~eIr~lEnekk~lq 161 (1857)
++.|-+...-+.+......|+.+..++....+.+..+-.++...-. +-+. |. +=+++....-+.+.......-
T Consensus 4 ~~dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa 83 (239)
T PF05276_consen 4 ELDPRVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAA 83 (239)
T ss_pred ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888888888888888777766655 3333 43 444555544444444333333
Q ss_pred HHHHHHHHHHhhhhHhhhH
Q psy10988 162 EEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 162 ErL~~LedK~~~L~eEIe~ 180 (1857)
..-....+-+....+-+..
T Consensus 84 ~~yerA~~~h~aAKe~v~l 102 (239)
T PF05276_consen 84 LQYERANSMHAAAKEMVAL 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 350
>KOG0992|consensus
Probab=24.91 E-value=1.8e+03 Score=29.57 Aligned_cols=250 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHhHhHHHHHHHHHhhHHh---hhchhhhHHHHhhhhhHHHHHHHHHhhh
Q psy10988 895 NTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIELESTLDA---KLTDFSTKEQLNKNKMAELSAMLESVQA 971 (1857)
Q Consensus 895 ~~~~~~~lq~~k~~~k~~~~~e~~dl~~~~~~~k~~E~~~~e~~~k~~~---~~~d~~~~~~~~~~e~~el~~~le~~e~ 971 (1857)
++.-++-+..++.- +.+|.+..+.-+..+.|.-.+.++--+ ..+. -.+.+++....+-.--|+.+-+
T Consensus 160 ls~~le~~~~~~~~--------~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nr--h~~erlk~~~~s~~e~l~kl~~ 229 (613)
T KOG0992|consen 160 LSEELERLRPIESV--------AEKLRIELEQLRHSTQQEENLLTTTLAAVEEENR--HLKERLKIVEESRLESLGKLNS 229 (613)
T ss_pred HHHHHHhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHhhhHHH
Q psy10988 972 ENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ-DKLRSYTHVE 1050 (1857)
Q Consensus 972 ~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q-~~~r~~~~~~ 1050 (1857)
| -++..+.++...++++++.++-.|-.=--.++ +++-+....-..|.+++.++- +.+.++.+..
T Consensus 230 E-qQlq~~~~ehkllee~~~rl~~~~s~VegS~S--------------~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~ 294 (613)
T KOG0992|consen 230 E-QQLQALIREHKLLEEHLERLHLQLSDVEGSWS--------------GQNLALEKQRSRLEEQVAEETTEKRKAVKKRD 294 (613)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhhhhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHH
Q psy10988 1051 NELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELL 1130 (1857)
Q Consensus 1051 ~e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~ 1130 (1857)
.-++.-....||+. -+-++ +---+-+...+..++..+-.+-++|-.-.-+++.+.-.+++||-.+-.+..+.
T Consensus 295 ~l~q~~~~~~~eL~--K~kde------~~~n~~~~~lie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~ 366 (613)
T KOG0992|consen 295 DLIQSRKQVSFELE--KAKDE------IKQNDDKVKLIEELQDELSVALKECREENKIETQVNFERNKLQNEETEKKEEK 366 (613)
T ss_pred HHHHHHHHHHHHHH--HHHHH------HhccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHH
Q ss_pred hhhHHHHH---HhHHhHHH-HHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHH
Q psy10988 1131 KQIQEESI---ASNFLKNE-LQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLK 1183 (1857)
Q Consensus 1131 ~e~ed~~i---~~n~~~~~-l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~k 1183 (1857)
.=+-++.- +--.++.+ |++.+..|.-.--- .-.+++++.-+|...-+
T Consensus 367 tlla~~~dr~se~~e~teqkleelk~~f~a~q~K------~a~tikeL~~El~~yrr 417 (613)
T KOG0992|consen 367 TLLAAADDRFSEYSELTEQKLEELKVQFTAKQEK------HAETIKELEIELEEYRR 417 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
No 351
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.78 E-value=7.8e+02 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 194 KDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 194 ~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
++..+..+...|..++..+.......
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~ 31 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERD 31 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666666666655555544
No 352
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=24.40 E-value=1.5e+03 Score=28.60 Aligned_cols=270 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred chhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHhhhHHHHHhhhccccchhHhH---
Q psy10988 578 DNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQL------EEDTSILREQLESKDQVDDSIEK--- 648 (1857)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l------~~ek~~L~~ql~~~~~~~d~ee~--- 648 (1857)
+++..|..-...+.-=...+...+..+.........-+..||..+..+ -.+--.++..=..-|.+-|.=|.
T Consensus 43 ~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~ 122 (384)
T PF03148_consen 43 DSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELL 122 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHH
Q ss_pred ----hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHH--hHHHhhh-----hhhhccCCCccchhhhhhhhhh-
Q psy10988 649 ----TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKE--KYEQMSE-----KFENQTGKDSVDIDTLIKNLQS- 716 (1857)
Q Consensus 649 ----~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~--~~e~~e~-----k~e~~~~~ek~~~~~~ik~l~~- 716 (1857)
-+++--.-|...++...+....+.+.+..|+..+++-.. +||..-. -.--.......-.+...-+.++
T Consensus 123 kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W 202 (384)
T PF03148_consen 123 KEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESW 202 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHH
Q ss_pred ---hHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhh
Q psy10988 717 ---KKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISL 793 (1857)
Q Consensus 717 ---~~e~i~kl~kEkk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk 793 (1857)
-.+.|.+-.++... ...+-..+.. .+.+.-+++..|.+-.+.++.+. +.+...+|.+
T Consensus 203 ~~~s~~ni~~a~~e~~~----------S~~LR~~i~~-------~l~~~~~dl~~Q~~~vn~al~~R---i~et~~ak~~ 262 (384)
T PF03148_consen 203 EEFSNENIQRAEKERQS----------SAQLREDIDS-------ILEQTANDLRAQADAVNAALRKR---IHETQEAKNE 262 (384)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred hhhchHHHHHHHHHHHHh---HHHHhhhhhhhhhh-hhhchHH-----------------HHHhHHHhHHHHHHHHHHHH
Q psy10988 794 FEENNAFLQRSILDLERN---LDEKLKEFNEKEIS-YNENIEA-----------------SNHKIQQLTQETDTLKAELV 852 (1857)
Q Consensus 794 ~E~~~~~~qe~i~dle~~---l~e~lkk~~e~e~~-~~~~~e~-----------------~qkkikdL~~Ele~l~~~L~ 852 (1857)
||-.+......|.+++++ |+..+..+ +.=+. ..+|++. |-.-+++|..=+..|...|.
T Consensus 263 Le~ql~~~~~ei~~~e~~i~~L~~ai~~k-~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~ 341 (384)
T PF03148_consen 263 LEWQLKKTLQEIAEMEKNIEDLEKAIRDK-EGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLD 341 (384)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhchhhhhHHHHhhh
Q psy10988 853 AQAESTQLVKQEQALL 868 (1857)
Q Consensus 853 e~~~~t~~~~~~~~~~ 868 (1857)
++-.+-.....-+.-|
T Consensus 342 ~a~~~l~~L~~~~~~L 357 (384)
T PF03148_consen 342 EAEASLQKLERTRLRL 357 (384)
T ss_pred HHHHHHHHHHHHHHHH
No 353
>PRK00846 hypothetical protein; Provisional
Probab=24.16 E-value=3.2e+02 Score=27.71 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1560 KAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQ 1615 (1857)
Q Consensus 1560 ~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq 1615 (1857)
.++.|+.+|..|+.-.|.-+-.-+. +..+-.++|..|+.+++.+...+.+..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~----~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSE----ALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 354
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.05 E-value=9.4e+02 Score=26.03 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH
Q psy10988 203 AELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLE 282 (1857)
Q Consensus 203 ~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~ 282 (1857)
..|+.....+......+ ..++..+..+..+...+ ..-+....-.+.++..+.....+.+.+......
T Consensus 55 ~~l~~~r~~l~~~~~~~------------~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~ 121 (150)
T PF07200_consen 55 PELEELRSQLQELYEEL------------KELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEELAEEFLD 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SS
T ss_pred hHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555555555555555 55555556666666666 455566667777888888888888887666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 283 QDAMVKELKSKVETLEASLKQKEQE 307 (1857)
Q Consensus 283 leaELqeLekeveElE~~LEe~~ee 307 (1857)
-.-.+..|-+.+......-.-.+.+
T Consensus 122 g~~d~~~Fl~~f~~~R~~yH~R~~K 146 (150)
T PF07200_consen 122 GEIDVDDFLKQFKEKRKLYHLRRAK 146 (150)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 5556667766666665554444433
No 355
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.80 E-value=2e+03 Score=29.76 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 1671 LTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN 1731 (1857)
Q Consensus 1671 Lq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~ 1731 (1857)
|+.++.+++.++...+..+ ..+-..+.++..|..++++.+..++.+..|...+.
T Consensus 344 l~~~~~~L~~~~~~l~~~~-------~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 344 LLEKRQTLEQERKRLNKRV-------SAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555554444332 23446677888999999999999999999998876
No 356
>KOG4324|consensus
Probab=23.80 E-value=1.3e+02 Score=38.37 Aligned_cols=55 Identities=31% Similarity=0.393 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1673 QLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLK 1728 (1857)
Q Consensus 1673 ~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~ 1728 (1857)
-++..+..||.+|...++.++.-.+.|+ .-|-+..-.+....+.+.|..++.-+.
T Consensus 114 ~~~~ql~~ql~~~dt~~~s~~~ql~~Lk-vmhsms~r~e~snrl~~eLsrt~t~la 168 (476)
T KOG4324|consen 114 KRVNQLKKQLVEADTLLSSAQLQLDSLK-VMHSMSDREEGSNRLKEELSRTQTELA 168 (476)
T ss_pred hhhhhhhHHhhhhhcccchhhhhhhHHH-HHhhcchhhhhhhhhhHHHHHHHHHHh
Confidence 3456667799999988888887777776 555566555666666666555544443
No 357
>PRK11519 tyrosine kinase; Provisional
Probab=23.71 E-value=2e+03 Score=29.72 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=34.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 152 QLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN----ESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 152 ~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln----~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
...+-..|+++++..+..++......+.. ...+-+ ..+....-..+..+..++..++..+.++...+
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~-fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y 334 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNA-FRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLY 334 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777777777766666666 555443 21112222233344444544444444444433
No 358
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=23.64 E-value=8.3e+02 Score=25.24 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 250 EVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQ 303 (1857)
Q Consensus 250 eqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe 303 (1857)
..+..++..+..+...+....+.+......+..+..++..+...+..-..-+..
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~ 77 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQ 77 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333344444444444444444444444444555555544444444433333333
No 359
>PF15456 Uds1: Up-regulated During Septation
Probab=23.48 E-value=9.2e+02 Score=26.37 Aligned_cols=87 Identities=21% Similarity=0.260 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10988 1595 QQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVL---EQFQAEKDNEIAQSLEFLQGELNNSYAKNNEL 1671 (1857)
Q Consensus 1595 qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VL---EQFQ~EeEr~i~aalerlr~qL~e~~~k~ekL 1671 (1857)
-.|+.|..+++.|....+.+..++. .+..++..+.++.-+..-= -.|..+-..+-..++......+++|..+...+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5677888888888888888888876 6776777666665552000 00111112221223334444454555555555
Q ss_pred HHHHHHHHHHH
Q psy10988 1672 TQLISTLQHQL 1682 (1857)
Q Consensus 1672 q~kv~sLQ~QL 1682 (1857)
...+...+++|
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
Confidence 55444444444
No 360
>KOG4403|consensus
Probab=23.44 E-value=1.8e+03 Score=29.04 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhhHHH
Q psy10988 114 KENELHSRIEELEDKLQQKIDDEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESA 190 (1857)
Q Consensus 114 K~~eL~~EIeeLEakLqelK~kEKeLs---keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln~eq 190 (1857)
+.......+..+..+++.++-.|+.+. +.|+....+-+....++--++..+... -.+..+.+-.++ +
T Consensus 236 Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea-~rl~elreg~e~--------e- 305 (575)
T KOG4403|consen 236 QNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA-PRLSELREGVEN--------E- 305 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh-hhhhhhhcchhH--------H-
Confidence 344455667777777777777777766 666666666666666666555555511 111222222222 0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHH
Q psy10988 191 IAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEEL 238 (1857)
Q Consensus 191 l~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeL 238 (1857)
....+++.++..|+.+++ ++ -.|..|.+-..++.=|
T Consensus 306 --~~rkelE~lR~~L~kAEk-------el---e~nS~wsaP~aLQ~wL 341 (575)
T KOG4403|consen 306 --TSRKELEQLRVALEKAEK-------EL---EANSSWSAPLALQKWL 341 (575)
T ss_pred --HHHHHHHHHHHHHHHHHH-------HH---HhccCCCCcHHHHHHH
Confidence 001244445555544444 34 3466899988876555
No 361
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=23.25 E-value=7.6e+02 Score=24.67 Aligned_cols=77 Identities=16% Similarity=0.352 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10988 91 MPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVS-YQLEEKAIEISQLTEHNRFLQEEMQSLKD 169 (1857)
Q Consensus 91 ~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLs-keLnEl~~eIr~lEnekk~lqErL~~Led 169 (1857)
-|-++.+...+.++......+...+..+...+ ........... -.+..|..++..+...+..+.+++..++.
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L-------~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKL-------KELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555555555555554444444 33333222222 22233666666666777777777777766
Q ss_pred HHhhh
Q psy10988 170 KLRDL 174 (1857)
Q Consensus 170 K~~~L 174 (1857)
+..+|
T Consensus 86 R~~~L 90 (92)
T PF14712_consen 86 RADKL 90 (92)
T ss_pred HHHhh
Confidence 66554
No 362
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.88 E-value=8.9e+02 Score=25.33 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHh
Q psy10988 649 TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQM 692 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~ 692 (1857)
+...-+..++.|++.-+.....+......++..+.++...+.++
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888877777777777777776654
No 363
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.83 E-value=1.2e+03 Score=26.88 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q psy10988 240 KLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAE-VSGKLEQD-AMVKELKSKVETLEASLKQKEQELEGWTDNDNW 317 (1857)
Q Consensus 240 ~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l-~sdk~~le-aELqeLekeveElE~~LEe~~eelE~Lqqe~E~ 317 (1857)
..+........-+..+..+|..++.....++..+... ..+..... ..-.+-...+..+..++++=+...++|.+--.
T Consensus 6 a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~- 84 (182)
T PF15035_consen 6 AYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNA- 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHH-
Confidence 3344455555555555555666666555555555211 00000010 00011123344455666666666666544444
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHH
Q psy10988 318 GSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEK 397 (1857)
Q Consensus 318 ~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~ 397 (1857)
-+.++++........+...+..+...+..+..+...-......-+... .. -++....+|-.+=.++..+.+.
T Consensus 85 ---lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~---~~--y~~~eh~rll~LWr~v~~lRr~ 156 (182)
T PF15035_consen 85 ---LLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF---NQ--YLSSEHSRLLSLWREVVALRRQ 156 (182)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh--hhcccccHHHHHHHHHHHHHHH
Confidence 566777777777777777777777766666665555554444433333 33 5667777788888888888888
Q ss_pred HHHHHhhHH
Q psy10988 398 VSELQTQLL 406 (1857)
Q Consensus 398 Ie~LEgf~~ 406 (1857)
+..|.++.+
T Consensus 157 f~elr~~Te 165 (182)
T PF15035_consen 157 FAELRTATE 165 (182)
T ss_pred HHHHHHHHH
Confidence 888877776
No 364
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.64 E-value=3.9e+02 Score=26.07 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=30.6
Q ss_pred chhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q psy10988 946 TDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTS 994 (1857)
Q Consensus 946 ~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~ 994 (1857)
..+.....+.+.-+-.+...|.+.+. .+..|..++..|..++++++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~---rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEK---RNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666667777777777 77777777777777666654
No 365
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.18 E-value=7.7e+02 Score=32.38 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1648 NEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKL 1727 (1857)
Q Consensus 1648 r~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL 1727 (1857)
|.+.+.+..++.+++.....++.|..+...|+++...-...+..| +...-...+.+++.|+.+...+...+..+.++|
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a--v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA--VQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666656666666666655444333333222 222223455677778888888888888888888
Q ss_pred Hhh
Q psy10988 1728 KEV 1730 (1857)
Q Consensus 1728 ~~~ 1730 (1857)
...
T Consensus 140 ~~~ 142 (472)
T TIGR03752 140 AGV 142 (472)
T ss_pred hhc
Confidence 654
No 366
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.86 E-value=1.3e+03 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 281 LEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 281 ~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
..+..+++.++.+...+...+..+....+.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 367
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.81 E-value=3.4e+02 Score=26.51 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWG 372 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~ 372 (1857)
+++|..++..+......|+.++..+-.-+..+..++.++..+...+.++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666666666666666666666666666666666655554
No 368
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.62 E-value=5e+02 Score=31.19 Aligned_cols=85 Identities=24% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy10988 238 LEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEE--------------------------------------------- 272 (1857)
Q Consensus 238 Le~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqE--------------------------------------------- 272 (1857)
|+.++.++..+...+.....-|+.|++++......
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHH
Q psy10988 273 KEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDI 326 (1857)
Q Consensus 273 lE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqL 326 (1857)
+-.+.+.+.+.++...+|+.++......+..++.+++.|+.+=. .+-+++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~----kLYEKi 130 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV----KLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
No 369
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.55 E-value=3.1e+02 Score=33.07 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy10988 240 KLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVS 278 (1857)
Q Consensus 240 ~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~s 278 (1857)
.++..+..|..++..+...|+.++..+...+..|+....
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666677777777766666666666666666555533
No 370
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.39 E-value=1.3e+03 Score=26.64 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=8.1
Q ss_pred HHhhhcC-CCCCCCchh
Q psy10988 218 EVEEWGN-NDAWGASDD 233 (1857)
Q Consensus 218 e~~~~~~-~~~~~~~d~ 233 (1857)
..+.+|+ |-.|.-...
T Consensus 46 ~~EKiGssn~YWsFps~ 62 (188)
T PF03962_consen 46 HVEKIGSSNYYWSFPSQ 62 (188)
T ss_pred hhhhccCeeEEEecChH
Confidence 3345675 445654433
No 371
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.39 E-value=1.2e+03 Score=26.30 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=17.1
Q ss_pred HHHHhhhHHHHHHHHhhhhhhHHHH
Q psy10988 1009 QRVQELDAKLAEEIASKTSIIQTLE 1033 (1857)
Q Consensus 1009 ~~~~~~~~~la~~~~~~~~~~~~l~ 1033 (1857)
.++++++.++...|.+++.+++.++
T Consensus 127 ~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 127 LKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888777777666665443
No 372
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.34 E-value=1.3e+03 Score=28.82 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHH
Q psy10988 341 AKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATL 387 (1857)
Q Consensus 341 EelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~ak 387 (1857)
.+.+.++..|++-++..++.|-+..+=|..+=. .|+..|+||..+
T Consensus 120 KEARkEIkQLkQvieTmrssL~ekDkGiQKYFv--DINiQN~KLEsL 164 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAEKDKGIQKYFV--DINIQNKKLESL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHh--hhhhhHhHHHHH
Confidence 344444555566666666777777777777777 666666665543
No 373
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=21.20 E-value=1.6e+02 Score=30.87 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHHHHhhhhhhHhhhhhhHhHHhhhhHHHhhhh-hhhhhh-hHHH
Q psy10988 1337 LQNEVLRSATEIDNMKETITYLEQYNLQLSKSQ-ESSTTL-TLLQ 1379 (1857)
Q Consensus 1337 L~~E~~~~~~e~~~~k~~~~~le~~~~~le~~l-~~a~~~-~e~q 1379 (1857)
|..|... +..|-..+. .+++.+-+|..+| +-||+. +.+.
T Consensus 3 l~~e~~~-r~~ae~~~~---~ie~ElEeLTasLFeEAN~MVa~ar 43 (100)
T PF06428_consen 3 LEEERER-REEAEQEKE---QIESELEELTASLFEEANKMVADAR 43 (100)
T ss_dssp HHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 777777776 9999999999999 999998 6554
No 374
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=20.95 E-value=1.2e+03 Score=26.11 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHHhhhhHhhhHHHHHHhh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhH-HHHHHHHHH
Q psy10988 167 LKDKLRDLDENVTVEDIKKAN--ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDV-KEELEKLVV 243 (1857)
Q Consensus 167 LedK~~~L~eEIe~~de~Kln--~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~-KeeLe~lre 243 (1857)
++..+.....+|.. ....++ .+.+.+...++-.-+.+|....+.|.+.....-+.-.||+...--.. ...+..+..
T Consensus 6 a~rny~~a~aeL~~-a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~ 84 (136)
T PF11570_consen 6 AERNYEAARAELDQ-ADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQK 84 (136)
T ss_dssp HHHHCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHH
Confidence 45566667777777 555565 77788888889999999999999999866655444444433222111 133333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10988 244 EKQELIEVIQNHETLIAKLEAD 265 (1857)
Q Consensus 244 E~~eLqeqi~qlEkeIa~L~~q 265 (1857)
++.+-+.++--..+.++.+...
T Consensus 85 dv~nkq~~l~AA~~~l~~~~~e 106 (136)
T PF11570_consen 85 DVQNKQNKLKAAQKELNAADEE 106 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444444333
No 375
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.94 E-value=6.7e+02 Score=25.12 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=40.3
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1543 LKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEK 1613 (1857)
Q Consensus 1543 LR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDe 1613 (1857)
|.+-+...+.+|++-.-.-+..+.+|+..+........ ..+.+|..|..|+..+..+.+.
T Consensus 8 Ll~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a-----------~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA-----------ALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677788888888888888889888877665511 2345566666666666655543
No 376
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.83 E-value=7e+02 Score=25.05 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 233 DVKEELEKLVVEKQELIEVIQNHETLIAKL-EADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEAS 300 (1857)
Q Consensus 233 ~~KeeLe~lreE~~eLqeqi~qlEkeIa~L-~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~ 300 (1857)
+....++.+++|.|.|.=+|+=++..+... ......+-++.-.+..+...+..+++...+.+....+.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888999999999999999888843 44444444444444455555555555555555544443
No 377
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.77 E-value=2e+03 Score=28.76 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=20.8
Q ss_pred hHHHHHHHhhHHHHhchheecCchHHhHhhhccCCCCcccccCcchhhhhh
Q psy10988 446 FEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNTLREESG 496 (1857)
Q Consensus 446 Ey~~AVE~~~Lee~L~~~VVd~~dea~e~L~~nekGra~ff~Ld~~~~~~~ 496 (1857)
--..++|. + .+=-++||+..++ +++++.|++|.|-.
T Consensus 225 rnir~~e~-~---tgvd~iiddtp~~-----------v~ls~fdp~rreia 260 (514)
T TIGR03319 225 RNIRALET-L---TGVDLIIDDTPEA-----------VILSGFDPVRREIA 260 (514)
T ss_pred chHHHHHH-H---hCceEEEcCCCCe-----------EEecCCchHHHHHH
Confidence 33445555 2 2234566666554 45667888887754
No 378
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.65 E-value=8.3e+02 Score=24.14 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10988 239 EKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEV-----SGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTD 313 (1857)
Q Consensus 239 e~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~-----sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqq 313 (1857)
|+....+......+..+...|..+...+......+.... .+......-+..+...+......+...+..++....
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 314 NDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTH 353 (1857)
Q Consensus 314 e~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE 353 (1857)
... ....+...++.-...-.........+.+.+...
T Consensus 81 ~l~----~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lD 116 (123)
T PF02050_consen 81 ELQ----EARRERKKLEKLKERRREEYQQEEERREQKELD 116 (123)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 379
>KOG0972|consensus
Probab=20.53 E-value=1.7e+03 Score=27.84 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=47.5
Q ss_pred HHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1535 TLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKL 1614 (1857)
Q Consensus 1535 kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDee 1614 (1857)
.+..|.--+|-|+..|...++ +.+.. +..++.-|..-+.-+|.+..+-...--+|-.|+..+.++--.+
T Consensus 217 t~k~DakDWR~H~~QM~s~~~----nIe~~-------~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a 285 (384)
T KOG0972|consen 217 TLKQDAKDWRLHLEQMNSMHK----NIEQK-------VGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRA 285 (384)
T ss_pred hhccccHHHHHHHHHHHHHHH----HHHHh-------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778899999998665 33333 3345555555555555555444444445556666666665555
Q ss_pred HHHHHHHHHHHHH
Q psy10988 1615 QEKLYQAEDVVQK 1627 (1857)
Q Consensus 1615 q~qls~sek~~rk 1627 (1857)
+..++..+...++
T Consensus 286 ~~~lse~~e~y~q 298 (384)
T KOG0972|consen 286 TDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544333
No 380
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.18 E-value=7.8e+02 Score=32.32 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHH
Q psy10988 1504 ERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQ 1545 (1857)
Q Consensus 1504 ERdklel~LkqlQ~E~eelq~E~~~lrEKe~kl~~ELERLR~ 1545 (1857)
..+-|-.+++++..+.+.+ ......+..|.+|||.
T Consensus 60 TlrTlva~~k~~r~~~~~l-------~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKL-------ISENEALKAENERLQK 94 (472)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4444555555555555444 3445566667777776
No 381
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=20.05 E-value=77 Score=32.03 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=31.4
Q ss_pred CccchhHhhhhhc-chhHHHHHHHhhHHHHhchheecCchHHh
Q psy10988 431 GNSTELNNLRAKC-SEFEKTIVELKSQEELLKQALIDKENELS 472 (1857)
Q Consensus 431 g~~~lLsDli~~v-~eEy~~AVE~~~Lee~L~~~VVd~~dea~ 472 (1857)
+....+.|++. | +++|+.++.. +|+ +.|||++.++|.
T Consensus 80 ~~~~~l~d~i~-~~d~~~~~~~~~-llg---~~~vv~~l~~A~ 117 (120)
T PF06470_consen 80 GGAGPLIDLIE-FPDEEYRPALEF-LLG---DVVVVDDLEEAR 117 (120)
T ss_dssp TSEEEGGGGEE-ESCGGGHHHHHH-HHT---TEEEESSHHHHH
T ss_pred cchHHHHHhcc-cCcHHHHHHHHH-HcC---CEEEECCHHHHH
Confidence 44567999999 9 8899999998 665 779999999986
Done!