Query psy10988
Match_columns 1857
No_of_seqs 166 out of 178
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 15:19:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fxo_A Myosin heavy chain, car 99.4 7.5E-13 2.6E-17 135.1 13.5 106 589-694 10-125 (129)
2 1i84_S Smooth muscle myosin he 99.3 5.8E-13 2E-17 174.5 7.8 232 592-832 857-1106(1184)
3 1c1g_A Tropomyosin; contractIl 99.2 3.4E-07 1.2E-11 96.9 38.6 40 141-180 69-108 (284)
4 1c1g_A Tropomyosin; contractIl 99.1 7.6E-07 2.6E-11 94.3 38.9 37 96-132 3-39 (284)
5 1i84_S Smooth muscle myosin he 98.7 3.3E-08 1.1E-12 130.1 11.5 91 321-413 1085-1175(1184)
6 1gxl_A SMC, chromosome segrega 98.4 1.6E-07 5.5E-12 99.9 5.7 100 380-492 3-105 (213)
7 3nwc_A SMC protein; structural 98.4 1.8E-07 6E-12 101.0 5.4 92 384-492 3-98 (189)
8 2dfs_A Myosin-5A; myosin-V, in 98.4 8.5E-07 2.9E-11 116.1 12.0 116 649-779 925-1048(1080)
9 3bas_A Myosin heavy chain, str 98.3 2E-06 6.9E-11 83.3 9.1 69 589-663 11-88 (89)
10 1gxj_A SMC, chromosome segrega 98.2 6.6E-07 2.2E-11 94.0 3.3 90 390-492 1-93 (186)
11 3l51_B Structural maintenance 97.9 4E-06 1.4E-10 88.4 3.3 62 428-492 15-79 (166)
12 2wd5_B Structural maintenance 97.5 5.1E-05 1.7E-09 81.6 4.0 61 430-492 47-111 (213)
13 2wd5_A Structural maintenance 97.4 7E-05 2.4E-09 82.3 3.2 59 432-492 55-117 (233)
14 2fxo_A Myosin heavy chain, car 97.3 0.0037 1.3E-07 64.1 14.7 88 717-811 39-126 (129)
15 3l51_A Structural maintenance 97.2 0.00011 3.8E-09 76.9 2.4 59 431-493 16-78 (161)
16 2v71_A Nuclear distribution pr 96.9 0.055 1.9E-06 59.2 20.0 171 202-397 9-183 (189)
17 3na7_A HP0958; flagellar bioge 96.8 0.083 2.8E-06 59.3 21.1 47 325-371 91-137 (256)
18 3na7_A HP0958; flagellar bioge 96.7 0.13 4.4E-06 57.8 22.0 44 232-275 42-85 (256)
19 2v71_A Nuclear distribution pr 95.5 0.67 2.3E-05 50.8 18.9 129 244-382 50-182 (189)
20 3o0z_A RHO-associated protein 95.1 1.6 5.5E-05 47.1 19.8 123 232-358 37-163 (168)
21 3vkg_A Dynein heavy chain, cyt 94.9 5 0.00017 58.8 29.8 104 233-340 2011-2114(3245)
22 3o0z_A RHO-associated protein 94.8 3 0.0001 45.0 20.9 149 1561-1731 4-156 (168)
23 3vkg_A Dynein heavy chain, cyt 94.1 3.6 0.00012 60.3 25.4 32 188-219 1933-1964(3245)
24 2dfs_A Myosin-5A; myosin-V, in 92.1 3 0.0001 55.7 18.8 32 148-179 921-952 (1080)
25 2efr_A General control protein 91.8 12 0.00041 40.1 19.4 30 262-291 26-55 (155)
26 3oja_B Anopheles plasmodium-re 91.7 1.2 4.2E-05 54.3 13.7 80 324-405 502-581 (597)
27 2efr_A General control protein 91.0 19 0.00064 38.6 23.2 115 135-262 26-152 (155)
28 3oja_B Anopheles plasmodium-re 90.8 1.4 5E-05 53.6 13.1 119 241-366 461-579 (597)
29 1upt_B Golgi autoantigen, golg 89.0 0.36 1.2E-05 44.4 4.3 37 1739-1778 8-44 (60)
30 2v66_B Nuclear distribution pr 88.0 8.4 0.00029 39.3 13.8 83 1562-1644 2-84 (111)
31 3u1c_A Tropomyosin alpha-1 cha 88.0 15 0.00053 36.4 15.6 86 195-292 8-93 (101)
32 3s84_A Apolipoprotein A-IV; fo 84.2 65 0.0022 37.0 23.3 225 839-1124 19-263 (273)
33 3u59_A Tropomyosin beta chain; 81.5 40 0.0014 33.3 15.0 24 196-219 9-32 (101)
34 4gkw_A Spindle assembly abnorm 81.0 58 0.002 34.1 22.7 102 198-311 13-117 (167)
35 3tnu_B Keratin, type II cytosk 79.7 29 0.00099 35.5 13.9 51 242-292 74-124 (129)
36 3bas_A Myosin heavy chain, str 78.9 5.8 0.0002 38.6 8.0 43 649-691 46-88 (89)
37 3u1c_A Tropomyosin alpha-1 cha 78.8 55 0.0019 32.5 15.3 34 243-276 30-63 (101)
38 3hnw_A Uncharacterized protein 78.0 24 0.00081 37.0 12.8 67 188-266 67-133 (138)
39 3tnu_A Keratin, type I cytoske 77.2 26 0.0009 35.9 12.8 51 242-292 76-126 (131)
40 3ol1_A Vimentin; structural ge 76.0 51 0.0017 33.6 14.3 41 256-296 19-59 (119)
41 3u59_A Tropomyosin beta chain; 74.2 71 0.0024 31.5 14.5 21 199-219 5-25 (101)
42 3oja_A Leucine-rich immune mol 73.9 50 0.0017 39.6 16.0 65 293-361 422-486 (487)
43 3tnu_B Keratin, type II cytosk 73.7 37 0.0013 34.7 12.7 95 952-1059 31-125 (129)
44 2eqb_B RAB guanine nucleotide 72.5 11 0.00039 37.6 8.2 62 1169-1235 5-66 (97)
45 1gk4_A Vimentin; intermediate 71.6 48 0.0016 31.8 12.2 75 198-294 3-77 (84)
46 3oja_A Leucine-rich immune mol 70.6 56 0.0019 39.2 15.4 60 324-385 414-473 (487)
47 2v66_B Nuclear distribution pr 70.5 1E+02 0.0034 31.6 14.8 71 292-366 35-105 (111)
48 3ol1_A Vimentin; structural ge 69.8 1E+02 0.0034 31.4 15.7 59 197-267 21-79 (119)
49 1x8y_A Lamin A/C; structural p 68.6 25 0.00085 34.0 9.5 76 198-295 5-80 (86)
50 1fxk_A Prefoldin; archaeal pro 67.5 80 0.0027 30.5 13.1 43 92-134 1-43 (107)
51 2b9c_A Striated-muscle alpha t 65.4 1.4E+02 0.0048 31.6 15.2 65 238-302 61-125 (147)
52 3tnu_A Keratin, type I cytoske 65.1 70 0.0024 32.8 12.7 30 242-271 37-66 (131)
53 3ibp_A Chromosome partition pr 64.5 50 0.0017 38.6 12.5 53 435-488 124-178 (302)
54 3ghg_A Fibrinogen alpha chain; 63.9 71 0.0024 39.9 14.2 57 255-311 107-164 (562)
55 1m1j_B Fibrinogen beta chain; 63.0 51 0.0017 40.6 12.9 52 13-68 65-116 (464)
56 3q8t_A Beclin-1; autophagy, AT 62.5 76 0.0026 31.4 11.8 40 272-311 12-51 (96)
57 2zqm_A Prefoldin beta subunit 61.1 1.1E+02 0.0037 30.0 12.8 45 90-134 4-48 (117)
58 3hnw_A Uncharacterized protein 60.8 62 0.0021 33.9 11.4 69 241-309 66-134 (138)
59 2no2_A HIP-I, huntingtin-inter 59.8 1.1E+02 0.0038 30.9 12.6 84 956-1059 7-90 (107)
60 2v4h_A NF-kappa-B essential mo 58.6 89 0.003 32.0 11.5 81 197-300 25-105 (110)
61 3swk_A Vimentin; cytoskeleton, 58.2 44 0.0015 32.5 9.1 53 260-312 3-55 (86)
62 2ocy_A RAB guanine nucleotide 58.1 2E+02 0.007 30.9 19.6 140 111-276 4-148 (154)
63 2e7s_A RAB guanine nucleotide 57.5 24 0.00083 37.1 7.6 87 947-1040 43-130 (135)
64 1ic2_A Tropomyosin alpha chain 57.3 1.1E+02 0.0039 29.0 11.7 24 240-263 38-61 (81)
65 2v4h_A NF-kappa-B essential mo 56.7 1.5E+02 0.0052 30.4 12.8 33 244-276 25-57 (110)
66 3mq9_A Bone marrow stromal ant 54.2 1.4E+02 0.0049 35.5 14.7 102 1243-1372 361-462 (471)
67 2w6b_A RHO guanine nucleotide 53.8 18 0.00062 32.9 5.1 39 589-627 14-52 (56)
68 2i1j_A Moesin; FERM, coiled-co 53.6 16 0.00054 45.8 6.6 152 1532-1732 310-461 (575)
69 1l8d_A DNA double-strand break 52.8 1E+02 0.0034 30.3 10.9 35 242-276 9-43 (112)
70 1j1d_B Troponin T, TNT; THIN f 52.8 40 0.0014 34.2 8.1 63 642-705 39-101 (106)
71 2b9c_A Striated-muscle alpha t 52.3 2.4E+02 0.0081 29.9 15.9 63 249-311 79-141 (147)
72 2eqb_B RAB guanine nucleotide 48.3 90 0.0031 31.4 9.6 86 583-692 10-95 (97)
73 1l8d_A DNA double-strand break 47.2 2.1E+02 0.0073 27.9 12.7 41 94-134 5-45 (112)
74 3swk_A Vimentin; cytoskeleton, 46.9 1.6E+02 0.0055 28.6 11.0 60 199-270 3-62 (86)
75 3i00_A HIP-I, huntingtin-inter 46.5 46 0.0016 34.3 7.6 42 1535-1583 19-60 (120)
76 2oto_A M protein; helical coil 46.2 2.3E+02 0.0079 29.7 13.1 53 242-294 28-80 (155)
77 3mov_A Lamin-B1; LMNB1, B-type 45.4 67 0.0023 31.8 8.2 74 198-293 14-87 (95)
78 2jee_A YIIU; FTSZ, septum, coi 45.1 98 0.0033 30.2 9.0 39 323-361 33-71 (81)
79 3mq9_A Bone marrow stromal ant 43.7 3.4E+02 0.012 32.3 15.7 67 1604-1688 399-465 (471)
80 1j1d_C Troponin I, TNI; THIN f 41.0 1.3E+02 0.0044 31.7 9.9 71 627-698 41-111 (133)
81 1deq_A Fibrinogen (alpha chain 39.1 1.9E+02 0.0066 34.9 12.1 36 1542-1584 53-88 (390)
82 3jsv_C NF-kappa-B essential mo 39.1 1.5E+02 0.0051 29.7 9.5 48 257-304 40-87 (94)
83 1ytz_T Troponin T; muscle, THI 38.2 36 0.0012 34.5 5.2 71 629-701 27-97 (107)
84 1m1j_B Fibrinogen beta chain; 37.6 6.2E+02 0.021 31.3 16.6 34 275-308 125-158 (464)
85 2zqm_A Prefoldin beta subunit 35.7 3.2E+02 0.011 26.6 11.6 95 591-692 5-110 (117)
86 3s4r_A Vimentin; alpha-helix, 35.5 3.3E+02 0.011 26.8 12.3 71 95-172 12-87 (93)
87 3zwh_Q Myosin-9; Ca-binding pr 35.4 7.5 0.00026 34.1 -0.1 32 1699-1730 1-32 (45)
88 4gkw_A Spindle assembly abnorm 34.9 4.3E+02 0.015 27.9 19.6 20 238-257 62-81 (167)
89 1deq_A Fibrinogen (alpha chain 34.6 3.9E+02 0.013 32.4 13.7 49 321-369 110-158 (390)
90 3jsv_C NF-kappa-B essential mo 33.6 3.4E+02 0.012 27.2 11.0 82 199-296 5-86 (94)
91 3a7p_A Autophagy protein 16; c 33.1 1E+02 0.0036 33.0 7.9 45 323-367 81-125 (152)
92 1j1e_C Troponin I, TNI; THIN f 31.9 1.9E+02 0.0066 31.8 9.8 70 628-698 42-111 (180)
93 3i00_A HIP-I, huntingtin-inter 31.3 2.8E+02 0.0096 28.6 10.5 33 242-274 39-71 (120)
94 1go4_E MAD1 (mitotic arrest de 31.3 38 0.0013 34.1 4.0 82 527-610 6-93 (100)
95 2p22_C Protein SRN2; endosome, 31.2 5.7E+02 0.019 28.1 15.7 84 232-315 103-188 (192)
96 3c9i_A Tail needle protein GP2 30.6 2.8E+02 0.0095 31.2 10.8 64 245-308 72-135 (242)
97 2jee_A YIIU; FTSZ, septum, coi 29.5 4.1E+02 0.014 26.0 11.5 20 269-288 53-72 (81)
98 3uux_B Mitochondrial division 28.2 3.5E+02 0.012 31.0 11.4 76 94-169 151-226 (242)
99 3nmd_A CGMP dependent protein 27.6 1.3E+02 0.0046 28.7 6.8 50 228-277 18-67 (72)
100 3trt_A Vimentin; cytoskeleton, 27.4 3.8E+02 0.013 24.9 10.4 41 1680-1723 35-75 (77)
101 3a7p_A Autophagy protein 16; c 26.6 4.5E+02 0.015 28.3 11.2 37 280-316 77-113 (152)
102 3nwc_A SMC protein; structural 26.5 39 0.0013 36.7 3.5 53 436-498 110-163 (189)
103 1wt6_A Myotonin-protein kinase 26.1 2.3E+02 0.0077 27.8 8.1 54 1631-1684 11-70 (81)
104 2k48_A Nucleoprotein; viral pr 25.3 3.4E+02 0.011 27.7 9.4 68 1596-1687 36-103 (107)
105 2qyw_A Vesicle transport throu 25.0 2.6E+02 0.009 27.7 8.8 83 925-1035 15-100 (102)
106 3l4q_C Phosphatidylinositol 3- 24.6 7.1E+02 0.024 27.1 13.0 124 209-348 9-148 (170)
107 3nmd_A CGMP dependent protein 24.4 1.8E+02 0.0061 27.9 7.0 47 88-134 15-61 (72)
108 3c9i_A Tail needle protein GP2 24.3 3.9E+02 0.013 30.0 10.5 73 242-314 83-155 (242)
109 2xv5_A Lamin-A/C; structural p 24.2 2.9E+02 0.01 26.3 8.5 52 242-293 4-55 (74)
110 3l51_A Structural maintenance 23.2 55 0.0019 34.2 3.7 52 433-490 98-149 (161)
111 4fi5_A Nucleoprotein; structur 23.1 2.1E+02 0.0074 29.4 7.7 71 1593-1687 20-90 (113)
112 3mq7_A Bone marrow stromal ant 22.8 6.6E+02 0.023 26.1 13.4 37 234-270 30-66 (121)
113 1m1j_A Fibrinogen alpha subuni 22.4 7.3E+02 0.025 30.8 13.3 36 1542-1584 51-86 (491)
114 3m91_A Proteasome-associated A 22.2 2E+02 0.0069 25.9 6.5 42 1562-1607 8-49 (51)
115 3cl3_D NF-kappa-B essential mo 22.1 1.7E+02 0.006 30.6 7.0 92 594-685 4-102 (130)
116 3efg_A Protein SLYX homolog; x 21.9 2.1E+02 0.0072 27.5 7.1 50 1560-1613 11-60 (78)
117 4h22_A Leucine-rich repeat fli 21.9 3E+02 0.01 27.9 8.4 32 330-361 50-81 (103)
118 1hci_A Alpha-actinin 2; triple 21.7 1E+03 0.035 27.9 29.9 322 232-557 113-470 (476)
119 1go4_E MAD1 (mitotic arrest de 21.7 1.6E+02 0.0056 29.6 6.5 67 667-733 13-89 (100)
120 3l4f_A RHO guanine nucleotide 21.4 1.5E+02 0.005 27.8 5.5 42 590-631 12-53 (61)
121 2k48_A Nucleoprotein; viral pr 21.3 5.6E+02 0.019 26.2 10.1 65 280-350 37-101 (107)
122 2ke4_A CDC42-interacting prote 21.3 4E+02 0.014 26.6 9.2 67 339-405 16-92 (98)
123 3s4r_A Vimentin; alpha-helix, 21.1 6E+02 0.02 25.0 12.8 80 198-291 11-90 (93)
124 3cve_A Homer protein homolog 1 20.8 2.1E+02 0.0073 27.4 6.7 40 322-361 5-44 (72)
125 2e7s_A RAB guanine nucleotide 20.6 82 0.0028 33.2 4.3 46 649-694 71-117 (135)
126 3iv1_A Tumor susceptibility ge 20.2 5.3E+02 0.018 25.1 9.3 52 263-314 24-75 (78)
127 4emc_A Monopolin complex subun 20.1 1.6E+02 0.0053 32.7 6.5 55 934-991 4-58 (190)
No 1
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=99.43 E-value=7.5e-13 Score=135.08 Aligned_cols=106 Identities=24% Similarity=0.419 Sum_probs=103.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH---------hHHHHHHHHH
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK---------TLRNEIQELH 658 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~---------~l~~~i~el~ 658 (1857)
+-++++..+.+++.+++++|.+.++.|++|+.++++|.+++|+|+.||++ ++.++|++|+ +|+.+|++++
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999 9999999999 9999999999
Q ss_pred HhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 659 AKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 659 ~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
+||+++|+.++.|++.|++|+++|++|+++|++++.
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.34 E-value=5.8e-13 Score=174.47 Aligned_cols=232 Identities=24% Similarity=0.313 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH---------hHHHHHHHHHHhh
Q psy10988 592 EEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK---------TLRNEIQELHAKL 661 (1857)
Q Consensus 592 ~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~---------~l~~~i~el~~rl 661 (1857)
.++..+..++..++.++...+..+.+++.++..|.++++.+..+++. ...+.+++++ .++..+.++..++
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888889999999889999999999999999999999988 6666666554 7888899999999
Q ss_pred hhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhh----hHHHHHHHHhhhhhhhhhhhh
Q psy10988 662 INVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQS----KKEELCRLLDEKNTLDNIKVE 737 (1857)
Q Consensus 662 ~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~----~~e~i~kl~kEkk~l~e~~~~ 737 (1857)
.+.++....+..++.+++.++.+|++++++++..+.. ...+....+.+++.+++ .++.+.++.++++.++..
T Consensus 937 ee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~-l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~--- 1012 (1184)
T 1i84_S 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK-LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER--- 1012 (1184)
T ss_dssp HHHHHC--------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999999999999999999884332 22277777888887776 778888888888888777
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHh---HHH
Q psy10988 738 KENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERN---LDE 814 (1857)
Q Consensus 738 ~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~---l~e 814 (1857)
+......+.. .+++++.+.+.+.++++++++++..+...++.+.++++.++.+++++..++..+.+++.. ++.
T Consensus 1013 ---i~~l~~~l~~-~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~ 1088 (1184)
T 1i84_S 1013 ---VSDLTTNLAE-EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777887 889999999999999999999999999999999999999999999999999999998887 777
Q ss_pred Hhhhhhhhhhh-hhhchHH
Q psy10988 815 KLKEFNEKEIS-YNENIEA 832 (1857)
Q Consensus 815 ~lkk~~e~e~~-~~~~~e~ 832 (1857)
+++.. +.++. +..++++
T Consensus 1089 ~l~~l-e~el~~l~~~le~ 1106 (1184)
T 1i84_S 1089 QLAKK-EEELQAALARLED 1106 (1184)
T ss_dssp -------------------
T ss_pred HHHHH-HHHHHHHHHHHHH
Confidence 77777 77777 6666665
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.16 E-value=3.4e-07 Score=96.94 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhH
Q psy10988 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTV 180 (1857)
Q Consensus 141 keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~ 180 (1857)
..+..+...+..++..+..+..++..+......+..++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (284)
T 1c1g_A 69 EKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLAT 108 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.12 E-value=7.6e-07 Score=94.30 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 96 DYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQK 132 (1857)
Q Consensus 96 ~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqel 132 (1857)
.++.++..+...+..+..++..+...+..+...+..+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 39 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444444444433
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.69 E-value=3.3e-08 Score=130.10 Aligned_cols=91 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHH
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSE 400 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~ 400 (1857)
.++.++..++.++..+..+++.....+..+...+..++.++..+..++.+... .+.........+..+...|+..|+.
T Consensus 1085 ~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~--~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA--ARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444433 4444455555666666666666666
Q ss_pred HHhhHHHHHHHHh
Q psy10988 401 LQTQLLSVEEALK 413 (1857)
Q Consensus 401 LEgf~~svk~l~k 413 (1857)
+.+...+-..+.+
T Consensus 1163 l~~vn~aq~el~~ 1175 (1184)
T 1i84_S 1163 TLDTTATQQELRG 1175 (1184)
T ss_dssp -------------
T ss_pred HhhHHHHHHHHHh
Confidence 6665554444444
No 6
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=98.42 E-value=1.6e-07 Score=99.90 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchhHHHHHHHhhHHHH
Q psy10988 380 DNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEEL 459 (1857)
Q Consensus 380 ~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~ 459 (1857)
.++.++.++.++..|+++...+.||..+++.++. ......|..+.|+|+|. |++.|.+|||. +||+.
T Consensus 3 ~~~~~~~~~~r~~~L~~~~~~~~~~~~~~~~ll~-----------~~~~~~g~~g~l~~li~-v~~~~e~Ave~-aLg~~ 69 (213)
T 1gxl_A 3 KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFE-----------EKERFPGLVDVVSNLIE-VDEKYSLAVSV-LLGGT 69 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHT-----------TTTSCTTEEEEGGGTCB-CCHHHHHHHHH-HHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------hhhhhCCCceehhheee-eCHHHHHHHHH-HHHHh
Confidence 4567888999999999988888999999999986 21123466678999999 99999999999 99999
Q ss_pred hchheecCchHHh---HhhhccCCCCcccccCcchh
Q psy10988 460 LKQALIDKENELS---EWGQTNEWGSPSSSDLNTLR 492 (1857)
Q Consensus 460 L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~ 492 (1857)
++++||++.+.+. +||+.+..|+++|+|++.+.
T Consensus 70 l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~ 105 (213)
T 1gxl_A 70 AQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLID 105 (213)
T ss_dssp GGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSC
T ss_pred hcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcC
Confidence 9999999877654 89999999999999988754
No 7
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=98.39 E-value=1.8e-07 Score=101.05 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchh-HHHHHHHhhHHHHhch
Q psy10988 384 LATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEF-EKTIVELKSQEELLKQ 462 (1857)
Q Consensus 384 L~akq~E~kvLks~Ie~LEgf~~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eE-y~~AVE~~~Lee~L~~ 462 (1857)
|.+++.+++.|+++.+. +|..+++.+++ . ...|..|.|+|+|. |++. |.+|||. +||+.+++
T Consensus 3 ~~~~~~r~~~l~~~~~~--~~~~~v~~l~~-----------~--~~~gv~G~l~dLi~-V~~~kye~Ave~-aLG~~l~~ 65 (189)
T 3nwc_A 3 LESSERELIAAEAQREV--RGNRAAEELKR-----------S--GIGGIYGTLAELIK-VKDEAYALAIEV-ALGNRADN 65 (189)
T ss_dssp SHHHHHHHHHHHHHHHH--SSCTHHHHHTT-----------S--CCCSEEEEHHHHCE-ESCGGGHHHHHH-HHGGGGGC
T ss_pred hhHHHHHHHHHHHHHHh--hHHHHHHHHHh-----------c--CCCCceEEHHHhee-eChhhHHHHHHH-Hhcccccc
Confidence 45677888899999988 99999999997 2 24667789999999 9999 9999999 99999999
Q ss_pred heecCchHHh---HhhhccCCCCcccccCcchh
Q psy10988 463 ALIDKENELS---EWGQTNEWGSPSSSDLNTLR 492 (1857)
Q Consensus 463 ~VVd~~dea~---e~L~~nekGra~ff~Ld~~~ 492 (1857)
+||++.+.+. +||+.+..|+++|+|||.++
T Consensus 66 iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~ 98 (189)
T 3nwc_A 66 VVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIK 98 (189)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCCCCEEETTTCC
T ss_pred EEECCHHHHHHHHHHHHhcCCCceEEEECCccc
Confidence 9999999876 89999999999999999764
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.38 E-value=8.5e-07 Score=116.08 Aligned_cols=116 Identities=19% Similarity=0.247 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhhhhHHHhhHHHHHHH----HhhhHHHHHHHHhHHHhhhhhhhccCCCccchhhhhhhhhh----hHHH
Q psy10988 649 TLRNEIQELHAKLINVEALVNQAQVEK----QALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQS----KKEE 720 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~E~~~~~l~~~k----~kle~~~~eLk~~~e~~e~k~e~~~~~ek~~~~~~ik~l~~----~~e~ 720 (1857)
.|+++|.+|..||.+.++.+..|...+ .++..+|++|++++++|+.. +. +++..+++|++|++ +++.
T Consensus 925 ~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~-~~----e~~~~~~~v~~L~~e~~~l~~~ 999 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS-EE----EAKNATNRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHTHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875 48889999999999999982 33 55678899999998 9999
Q ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q psy10988 721 LCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHN 779 (1857)
Q Consensus 721 i~kl~kEkk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~ 779 (1857)
+.++.+|++.+++. ++++.++|+ +||++|.+.+.+|++++||||.....
T Consensus 1000 ~~~~~ke~~~lee~------~~~~~~~L~----~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1000 LHQTQTEKKTIEEW------ADKYKHETE----QLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 888888776 79999999999999999999954433
No 9
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=98.28 E-value=2e-06 Score=83.26 Aligned_cols=69 Identities=25% Similarity=0.255 Sum_probs=61.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhH---------hHHHHHHHHHH
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEK---------TLRNEIQELHA 659 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~---------~l~~~i~el~~ 659 (1857)
+-++++..+.+++.++++.|++.++.|++|+.++++|.+++|+|+.| ++|++|| +|+++|++|++
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q------l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS------MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999 7788877 77777777777
Q ss_pred hhhh
Q psy10988 660 KLIN 663 (1857)
Q Consensus 660 rl~~ 663 (1857)
||++
T Consensus 85 rl~e 88 (89)
T 3bas_A 85 LVGE 88 (89)
T ss_dssp HHTC
T ss_pred Hhhc
Confidence 7764
No 10
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=98.16 E-value=6.6e-07 Score=94.02 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCch
Q psy10988 390 ENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKEN 469 (1857)
Q Consensus 390 E~kvLks~Ie~LEgf~~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~d 469 (1857)
|+..|+.+...++||..+++.++. ......|..+.|+|+|. |++.|.+|||. +||+.++++||++.+
T Consensus 1 ~~~~L~~l~~~~~~~~~~~~~~l~-----------~~~~~~g~~g~l~~li~-v~~~~e~Ave~-aLG~~l~~ivv~~~~ 67 (186)
T 1gxj_A 1 EKEMIERDMREYRGFSRAVRAVFE-----------EKERFPGLVDVVSNLIE-VDEKYSLAVSV-LLGGTAQNIVVRNVD 67 (186)
T ss_dssp -------------CCCHHHHHHHH-----------TGGGCTTEEEEHHHHCB-CCGGGHHHHHH-HHGGGGGCEEESSHH
T ss_pred ChHHHHHHHHHHcchhHHHHHHHH-----------hhhhhCCcceehhheec-cCHHHHHHHHH-HHHHhhhEEEECCHH
Confidence 345677777788899999999886 21112355678999999 99999999999 999999999999877
Q ss_pred HHh---HhhhccCCCCcccccCcchh
Q psy10988 470 ELS---EWGQTNEWGSPSSSDLNTLR 492 (1857)
Q Consensus 470 ea~---e~L~~nekGra~ff~Ld~~~ 492 (1857)
.+. +||+.+..|+++|+|++.++
T Consensus 68 ~a~~~i~~lk~~~~gr~tflpl~~~~ 93 (186)
T 1gxj_A 68 TAKAIVEFLKQNEAGRVTILPLDLID 93 (186)
T ss_dssp HHHHHHHHHHHHTCCCEEEEETTTCC
T ss_pred HHHHHHHHHHhcCCCceEEEEccccC
Confidence 754 89999999999999998754
No 11
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=97.91 E-value=4e-06 Score=88.35 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchh
Q psy10988 428 WGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLR 492 (1857)
Q Consensus 428 W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~ 492 (1857)
+..|..|.|+|+|. |++.|.+||+. +|+ .++++||++.+.+. +||+++..|+++|+|||.++
T Consensus 15 ~~~Gv~G~v~dLi~-v~~~y~~Aie~-alg-~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~ 79 (166)
T 3l51_B 15 RIPGIYGRLGDLGA-IDEKYDIAISS-CCH-ALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMT 79 (166)
T ss_dssp SSTTEEEEGGGSCB-CCGGGHHHHHH-HCG-GGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTG
T ss_pred CCCCceEEHHHhee-eCHHHHHHHHH-HHh-hCceEEECCHHHHHHHHHHHHHcCCCeEEEEECcccc
Confidence 45677789999999 99999999999 998 99999999999886 99999999999999999876
No 12
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.49 E-value=5.1e-05 Score=81.63 Aligned_cols=61 Identities=20% Similarity=0.094 Sum_probs=54.2
Q ss_pred cCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccC-CCCcccccCcchh
Q psy10988 430 TGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNE-WGSPSSSDLNTLR 492 (1857)
Q Consensus 430 kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~ne-kGra~ff~Ld~~~ 492 (1857)
.|+.+.|+++|. |++.|.+|||. +||+.++++||++.+.+. +||+.+. .|+++|+|++.+.
T Consensus 47 ~g~~g~l~dli~-v~~~~e~Ave~-aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~~ 111 (213)
T 2wd5_B 47 NGYHGIVMNNFE-CEPAFYTCVEV-TAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLD 111 (213)
T ss_dssp TTEEEEGGGSEE-CCGGGHHHHHH-HHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTCC
T ss_pred CCceeeHHHhcc-cCHHHHHHHHH-HHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECcccC
Confidence 456678999999 99999999999 999999999999877755 8999998 9999999988754
No 13
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.36 E-value=7e-05 Score=82.29 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=52.5
Q ss_pred ccchhHhhhhhc-chhHHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchh
Q psy10988 432 NSTELNNLRAKC-SEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLR 492 (1857)
Q Consensus 432 ~~~lLsDli~~v-~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~ 492 (1857)
..+.|+|+|. | ++.|.+|||. +||+.++++||++...+. +||+.+..|+++|+|++.++
T Consensus 55 v~G~l~dli~-v~~~~ye~Ave~-aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~ 117 (233)
T 2wd5_A 55 VYGRLIDLCQ-PTQKKYQIAVTK-VLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLE 117 (233)
T ss_dssp EEEEHHHHEE-ESSGGGHHHHHH-HHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCC
T ss_pred eeeeHHHhce-eCcHHHHHHHHH-HHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccc
Confidence 4567999999 8 6999999999 999999999999876654 89999999999999998763
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.29 E-value=0.0037 Score=64.10 Aligned_cols=88 Identities=31% Similarity=0.438 Sum_probs=78.9
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhh
Q psy10988 717 KKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEE 796 (1857)
Q Consensus 717 ~~e~i~kl~kEkk~l~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~ 796 (1857)
+.+...+|..+|+.|..- ++..-+.+.. -++....|++.|..|+.+|.+|+..++.+.....+|...|+|+++
T Consensus 39 le~~~~~l~~Ek~~L~~q------L~~E~~~l~e-~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 39 LEEKMVSLLQEKNDLQLQ------VQAEQDNLAD-AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888887777 7777777777 899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHh
Q psy10988 797 NNAFLQRSILDLERN 811 (1857)
Q Consensus 797 ~~~~~qe~i~dle~~ 811 (1857)
++..+...|.|++..
T Consensus 112 e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 112 ECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
No 15
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=97.19 E-value=0.00011 Score=76.90 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=51.3
Q ss_pred CccchhHhhhhhcc-hhHHHHHHHhhHHHHhchheecCchHHh---HhhhccCCCCcccccCcchhh
Q psy10988 431 GNSTELNNLRAKCS-EFEKTIVELKSQEELLKQALIDKENELS---EWGQTNEWGSPSSSDLNTLRE 493 (1857)
Q Consensus 431 g~~~lLsDli~~v~-eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~nekGra~ff~Ld~~~~ 493 (1857)
|..|.|+|++. |+ +.|.+||+. +||+.++++||++.+.+. +++ +..|+++|+|||.++.
T Consensus 16 gv~G~v~dLi~-v~d~~y~~Ave~-alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~ 78 (161)
T 3l51_A 16 SVKGLVASLIN-VKDNSTATALEV-VAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISA 78 (161)
T ss_dssp GEEEEGGGSCE-ESCGGGHHHHHH-HHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCC
T ss_pred ccEEEHHHhee-eCchhHHHHHHH-HhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccc
Confidence 34489999999 95 899999999 999999999999999987 554 4579999999998753
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.93 E-value=0.055 Score=59.17 Aligned_cols=171 Identities=18% Similarity=0.111 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy10988 202 KAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKL 281 (1857)
Q Consensus 202 k~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~ 281 (1857)
..++...+....+....+ ..++.+|+.++....+|... ++++|..+..+...+.....++..+..
T Consensus 9 ~ee~~ywk~~~~~~~q~~------------~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSF------------QEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVE 73 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555 66666666666665555432 333444444444444444444444444
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 282 EQDAMV----KELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESL 357 (1857)
Q Consensus 282 ~leaEL----qeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeL 357 (1857)
.+...+ .+..+.+..+...+..++.....+...+- .+++.-..++....-...-+.++..+++....+.-.|
T Consensus 74 ~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir----eLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 74 ALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR----ELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444443 33344477778888888888888888888 8888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHH
Q psy10988 358 QKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEK 397 (1857)
Q Consensus 358 KsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~ 397 (1857)
.+.|.+ .+.+.. .+..+.+.+++++.|..++...
T Consensus 150 E~El~E----Ke~l~~--~~QRLkdE~rDLk~El~v~~~~ 183 (189)
T 2v71_A 150 ESELDE----KESLLV--SVQRLKDEARDLRQELAVRERQ 183 (189)
T ss_dssp HHHHHH----HHHHHC--CC--------------------
T ss_pred HHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 999986 445666 8888999999999988887643
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.81 E-value=0.083 Score=59.33 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10988 325 DIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEW 371 (1857)
Q Consensus 325 qLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel 371 (1857)
++..+..++..+..++..+...+-.+-..++.++..+..+...+..+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~ 137 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL 137 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333333333333333333
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.75 E-value=0.13 Score=57.80 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEA 275 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~ 275 (1857)
..++..+..+..++..+...+..++.+|...+..+.+.+..+..
T Consensus 42 ~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 42 EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444445555555555555555566666666666555555543
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.49 E-value=0.67 Score=50.82 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC
Q psy10988 244 EKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSG----KLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGS 319 (1857)
Q Consensus 244 E~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sd----k~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~ 319 (1857)
++..+..+...+..++..+...++..+..+....++ +..+..++..+......+...|-.+.+.-+.+....-
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R--- 126 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR--- 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---
Confidence 333333333334444444444444443333333333 5555555555555555555555555555555544444
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchh
Q psy10988 320 SGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDND 382 (1857)
Q Consensus 320 ~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~r 382 (1857)
.....+..++..+...-.+..=+...++. ...++..+..+..++..++. .+....+
T Consensus 127 -~~~~SleD~e~kln~aiEr~alLE~El~E----Ke~l~~~~QRLkdE~rDLk~--El~v~~~ 182 (189)
T 2v71_A 127 -ATIMSLEDFEQRLNQAIERNAFLESELDE----KESLLVSVQRLKDEARDLRQ--ELAVRER 182 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC---------------------
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 45566666666666666666666666653 33455555666666666666 5554443
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.09 E-value=1.6 Score=47.13 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
.++...+-.+..-+.+|+..+..+++.-..++.++..+...++.-..+...-...+.++...+.-+...++..+..+...
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555556666666667777777777777777777777777777777777777777777777777777777776
Q ss_pred hhccccCCCCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy10988 312 TDNDNWGSSGNEQDIEALKKENEEIK----EKLAKQESTLAKLKTHSESLQ 358 (1857)
Q Consensus 312 qqe~E~~~~eleeqLeeLEkEIEELe----eeLEelerKLEeLQnE~EeLK 358 (1857)
...-. .+.+.+..++++...+. =.|..++.+++.=..++..++
T Consensus 117 ~~e~r----~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~~Tk 163 (168)
T 3o0z_A 117 EGERK----EAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTK 163 (168)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 66677777777666665 335555554444444443333
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.91 E-value=5 Score=58.84 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10988 233 DVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWT 312 (1857)
Q Consensus 233 ~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lq 312 (1857)
=++.++..+..++.....++..++.+|..++..+..++..++....++..+..+++....++.-.++-+.-+-.+...|.
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 34445555555555555555566666666666666666666666666666666666667777777777777777777777
Q ss_pred hccccCCCCcHHHHHHHHHHHHHHHHHH
Q psy10988 313 DNDNWGSSGNEQDIEALKKENEEIKEKL 340 (1857)
Q Consensus 313 qe~E~~~~eleeqLeeLEkEIEELeeeL 340 (1857)
.... .++.++..+-+..--.-.-+
T Consensus 2091 ~~~~----~l~~~~~~L~GD~LLaaafi 2114 (3245)
T 3vkg_A 2091 QQSE----NFNTQMSTVVGDVVLASAFL 2114 (3245)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHhccHHHHHHHHHH
Confidence 7777 77777777666654444444
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.79 E-value=3 Score=45.04 Aligned_cols=149 Identities=16% Similarity=0.282 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy10988 1561 AEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLE 1640 (1857)
Q Consensus 1561 aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLE 1640 (1857)
..+++..|++.|.++-++++.-+. +..+++++..-+.-.+..++.-.-+++-++...+..--..+.-+.+||..|+
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE----~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESD----TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777776 4556666666676666666666666666666666666666677778885544
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy10988 1641 QFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLM--- 1717 (1857)
Q Consensus 1641 QFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~--- 1717 (1857)
+ ++. .--+....+ ..|+++|.+|+.-|+..... -+......+..+.-|..|..+...+.
T Consensus 80 q-----Er~---~r~q~se~~-------~elq~ri~~L~~El~~~k~~---~~k~~~e~r~L~Ekl~~lEKe~a~~eid~ 141 (168)
T 3o0z_A 80 A-----ERR---DRGHDSEMI-------GDLQARITSLQEEVKHLKHN---LEKVEGERKEAQDMLNHSEKEKNNLEIDL 141 (168)
T ss_dssp H-----HHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3 332 111222222 23555555555555555544 34444566778888888888888877
Q ss_pred -HHHHHHHHHHHhhh
Q psy10988 1718 -EELNKKEAKLKEVN 1731 (1857)
Q Consensus 1718 -E~L~kar~KL~~~~ 1731 (1857)
-.|-.++.++.--.
T Consensus 142 ~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 142 NYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 66777777765433
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.10 E-value=3.6 Score=60.30 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=18.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~ 219 (1857)
..+++.....+...+.+|+...++-+++..++
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666555555555555
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.10 E-value=3 Score=55.70 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=0.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhh
Q psy10988 148 IEISQLTEHNRFLQEEMQSLKDKLRDLDENVT 179 (1857)
Q Consensus 148 ~eIr~lEnekk~lqErL~~LedK~~~L~eEIe 179 (1857)
.....+++.+.-++.++...+.....+.+.+.
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~ 952 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952 (1080)
T ss_dssp ------------------------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544444444444443
No 25
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.79 E-value=12 Score=40.09 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Q psy10988 262 LEADLTRVKEEKEAEVSGKLEQDAMVKELK 291 (1857)
Q Consensus 262 L~~ql~~lkqElE~l~sdk~~leaELqeLe 291 (1857)
+..++.+.+.+.+....-+..++.++...-
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~ 55 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.69 E-value=1.2 Score=54.26 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10988 324 QDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQT 403 (1857)
Q Consensus 324 eqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~akq~E~kvLks~Ie~LEg 403 (1857)
.....+...+..+..+.+...+++...+......+.++..++.+++.+.. .+.....++..++.+..-++..+..++.
T Consensus 502 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~--~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 502 RSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK--QLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666666666666666666666666666666 6666666666666666666666665544
Q ss_pred hH
Q psy10988 404 QL 405 (1857)
Q Consensus 404 f~ 405 (1857)
..
T Consensus 580 ~~ 581 (597)
T 3oja_B 580 KK 581 (597)
T ss_dssp TT
T ss_pred Hh
Confidence 33
No 27
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.02 E-value=19 Score=38.58 Aligned_cols=115 Identities=16% Similarity=0.233 Sum_probs=63.1
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh--HHHHhhhH-------HHHHHHH
Q psy10988 135 DEKSVS---YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN--ESAIAKKD-------EVIEKLK 202 (1857)
Q Consensus 135 kEKeLs---keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln--~eql~~~e-------e~iEelk 202 (1857)
.+..|. ..+.....+|..++..++...+.+++|+....+....-+. ...+|+ ...+..++ ..+..+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~-yEeqIk~L~~kLKEAE~RAE~AERsv~kLE 104 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDK-YEEEIKVLSDKLKEAETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 5566666777777777777777777777666666655555 555555 33333333 3333444
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 203 AELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKL 262 (1857)
Q Consensus 203 ~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L 262 (1857)
..++.+++.+..-+..+ .....+|+..-.++..+.-.++.++++|+.+
T Consensus 105 k~id~lEd~L~~~Kek~------------~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 105 KSIDDLEDELYAQKLKY------------KAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 44444444444444444 4455555555555555555555555555544
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.81 E-value=1.4 Score=53.62 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC
Q psy10988 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSS 320 (1857)
Q Consensus 241 lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~ 320 (1857)
++.++..+.+.+...+..+...+..++...+.+.....+..+. ...+...+..+....+....++..+.+...
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 533 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS---SDNLNKVFTHLKERQAFKLRETQARRTEAD---- 533 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH---HHHHHHHHHHHHhhhhhhHHHHHHHHHhhh----
Confidence 3444444444445555555555555444443333221211111 222333333333333333333333333333
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEM 366 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~ 366 (1857)
.....++.++.++..++.+++..+..+..++.+...+..++..++.
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554444444444444443
No 29
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=88.96 E-value=0.36 Score=44.38 Aligned_cols=37 Identities=11% Similarity=0.354 Sum_probs=33.7
Q ss_pred HHHHHHhHhhccCCCCCChHHHHHHHHhhcCCCHHHHHhh
Q psy10988 1739 CLVTNMIVNFLTAPSRPSRHQALQILASVIDMTPQDRQKI 1778 (1857)
Q Consensus 1739 ~LVkNLlIgyf~tP~a~~R~EvLrLIaSVL~~~~eE~eKl 1778 (1857)
--+||+|+.|+... .+..|++.|++||-|+.+|+..+
T Consensus 8 EYLrNVl~~ym~g~---~~~~m~kaI~avL~Fs~~e~q~i 44 (60)
T 1upt_B 8 EYLRKVLFEYMMGR---ETKTMAKVITTVLKFPDDQTQKI 44 (60)
T ss_dssp HHHHHHHHHHHTTS---SHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcc---cHHHHHHHHHHHHhCCHHHHHHH
Confidence 35799999999875 78899999999999999999987
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.03 E-value=8.4 Score=39.30 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10988 1562 EQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQ 1641 (1857)
Q Consensus 1562 E~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQ 1641 (1857)
|.++.+|+.++..|.-.+-.-.+-|..+...++.++.+||..+..+...++.++.++...+-.--.++++-.+..+-|++
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 45667777777777776666667777777788889999999999999999999888877777777777777766666666
Q ss_pred Hhh
Q psy10988 1642 FQA 1644 (1857)
Q Consensus 1642 FQ~ 1644 (1857)
|..
T Consensus 82 ~E~ 84 (111)
T 2v66_B 82 FEQ 84 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.01 E-value=15 Score=36.37 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 195 DEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKE 274 (1857)
Q Consensus 195 ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE 274 (1857)
...|..++.+.+++.+..+.....+ ........++..++..|+.++..++.++..+...+......++
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~------------k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADK------------KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 4444444444555555555555555555544444444444444
Q ss_pred HhHhhhHHHHHHHHHHHH
Q psy10988 275 AEVSGKLEQDAMVKELKS 292 (1857)
Q Consensus 275 ~l~sdk~~leaELqeLek 292 (1857)
........-++++..|..
T Consensus 76 e~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 76 FAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 32
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=84.21 E-value=65 Score=36.97 Aligned_cols=225 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHhhchhhhhHHHHhhhhcCCcchhhHHHHHHHHHhHHHhhhhhhHHHH-HHHHHHHHh-------h
Q psy10988 839 QLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNLESVKQENTLVVE-NLQNLIAQK-------D 910 (1857)
Q Consensus 839 dL~~Ele~l~~~L~e~~~~t~~~~~~~~~~~~aq~e~nre~e~~klrr~lEe~~~e~~~~~~-~lq~~k~~~-------k 910 (1857)
.|+.++++++.+|.--+.... +++.-+ +..+|..|+-...++-.+|. |+..+++++ +
T Consensus 19 ~l~~~~eel~~~L~P~~~~l~-----------~~l~~~----le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~ 83 (273)
T 3s84_A 19 EIGKELEELRARLLPHANEVS-----------QKIGDN----LRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRME 83 (273)
T ss_dssp HHHHHHHHHHHHHGGGHHHHH-----------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHH-----------HHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHH-----HHhHhHHHHHHHHHhhHHhhhchhhhHHHHhhhhhHHHHHHHHH-hhhhhhhHHHHHHHHH
Q psy10988 911 YEINAKVTELSIIM-----EKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLES-VQAENISIKQMNEELQ 984 (1857)
Q Consensus 911 ~~~~~e~~dl~~~~-----~~~k~~E~~~~e~~~k~~~~~~d~~~~~~~~~~e~~el~~~le~-~e~~~~~~~q~~~~~~ 984 (1857)
..+...+++|...| +....+...+.+++..+.--..++-++.... +.+|...+.- ++. .-..++....
T Consensus 84 ~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~---leeLr~~l~P~ae~---~~~kl~~~~e 157 (273)
T 3s84_A 84 RVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQT---VEELRRSLAPYAQD---TQEKLNHQLE 157 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHGGGCSS---CHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHH---HHHHHHHhhhHHHH---HHHHHHHHHH
Q ss_pred HHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH-----HHHHhhhHHHHHHhhhhhh
Q psy10988 985 ALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ-----DKLRSYTHVENELGQYRSK 1059 (1857)
Q Consensus 985 ~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q-----~~~r~~~~~~~e~~q~r~k 1059 (1857)
+|..++...- ++|...|...+..++.-+..+-+.+..-- ++...+......|.| .
T Consensus 158 ~L~~ql~~~a-----------------~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~q---q 217 (273)
T 3s84_A 158 GLTFQMKKNA-----------------EELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQ---Q 217 (273)
T ss_dssp HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---H
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhhhcchHH
Q psy10988 1060 VYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEY 1124 (1857)
Q Consensus 1060 ~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~~~~le~ 1124 (1857)
.++.++..+ -.+++|.+. ...+.+++..| +..+ |.|+..|.-|++
T Consensus 218 ---~e~f~~~~~----p~~e~~~~~l~~~~e~l~~~l----~~~~---------~~~~~~~~~~~~ 263 (273)
T 3s84_A 218 ---VEEFRRRVE----PYGENFNKALVQQMEQLRQKL----GPHA---------GDVEGHLSFLEK 263 (273)
T ss_dssp ---HHHHHHHHT----THHHHHHHHHHHHHHHHHHHH----SCC----------------------
T ss_pred ---HHHHHHHhH----hhHHHHHHHHHHHHHHHHHHh----Ccch---------hhHHhhhhHHHH
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.49 E-value=40 Score=33.30 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 196 EVIEKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 196 e~iEelk~ELEelEkeleEiree~ 219 (1857)
..+..++.+.+++.+..+.....+
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~ 32 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADK 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 34
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=80.97 E-value=58 Score=34.14 Aligned_cols=102 Identities=25% Similarity=0.274 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10988 198 IEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEV 277 (1857)
Q Consensus 198 iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~ 277 (1857)
+..+...++++..++++..+++ +-+=..+..-+-.+..++.+-.-|.++|+.++.....++.-++...
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL------------~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~ 80 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEEL------------EIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKAD 80 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445666666666666777766 5555556555666667777777777888888777776666666555
Q ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh
Q psy10988 278 SGKLEQDAMVKE---LKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 278 sdk~~leaELqe---LekeveElE~~LEe~~eelE~L 311 (1857)
....+-+.+-.. =-.++.++++.+.+...-++.|
T Consensus 81 ~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~L 117 (167)
T 4gkw_A 81 QLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESL 117 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHH
T ss_pred HHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHH
Confidence 554443333111 1123445555555555555554
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.65 E-value=29 Score=35.53 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKS 292 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLek 292 (1857)
..++..++..+..++..+..++.++.+.-.++..+-+-+.+++.||..+.+
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777888888888888888888888888888888888776643
No 36
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.90 E-value=5.8 Score=38.59 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHH
Q psy10988 649 TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQ 691 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~ 691 (1857)
.|.....+|...+.+.|++...|...|..|++.+.+|...+++
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777777779999999999999999999999999877653
No 37
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.75 E-value=55 Score=32.50 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 243 VEKQELIEVIQNHETLIAKLEADLTRVKEEKEAE 276 (1857)
Q Consensus 243 eE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l 276 (1857)
..+........+++.+|..+...+..++.+++..
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444333333333333333
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.02 E-value=24 Score=37.00 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=35.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 ESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADL 266 (1857)
Q Consensus 188 ~eql~~~ee~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql 266 (1857)
-..+......++.+..+++...+++..++.++ -..+..++.+..++..+.+.+..++.++..+++.+
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el------------~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHEL------------IAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555 55555555555555555555555555555554433
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.23 E-value=26 Score=35.94 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKS 292 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLek 292 (1857)
..++..++..+..++..+..++.++.+.-.++..+-+-+.+++.||..+.+
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888888888888888888888888888777654
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.96 E-value=51 Score=33.58 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q psy10988 256 ETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVET 296 (1857)
Q Consensus 256 EkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveE 296 (1857)
+..|..++.+++.+..+.-++..++......+..|+.+++.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34455555555555555555555555555555555555544
No 41
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=74.16 E-value=71 Score=31.51 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10988 199 EKLKAELESVEKALREKESEV 219 (1857)
Q Consensus 199 Eelk~ELEelEkeleEiree~ 219 (1857)
+.++..+..++...+....+.
T Consensus 5 d~iKkKm~~lk~e~e~a~d~a 25 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRA 25 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.85 E-value=50 Score=39.56 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 293 KVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQL 361 (1857)
Q Consensus 293 eveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqL 361 (1857)
-..+.+...++.+...+.....++ .++++-..+++++.++...+.....++.++......+.+++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKET----QLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHH----HHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 333344444445555555555555 55666666666666666666666666666666555555443
No 43
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.69 E-value=37 Score=34.74 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=62.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHH
Q psy10988 952 EQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQT 1031 (1857)
Q Consensus 952 ~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~ 1031 (1857)
....+.++.++.+++...++ .|..+...+.+|..++.++...++.+... |...+..|++.| +..+.++.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~---el~~l~~~~~~LE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL----~~~r~e~~- 99 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRA---EIDNVKKQCANLQNAIADAEQRGELALKD---ARNKLAELEEAL----QKAKQDMA- 99 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhH----HHHHHHHH-
Confidence 34467888999999999988 77777777888888888888666554433 234444444433 33334333
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhh
Q psy10988 1032 LEIQVKELQDKLRSYTHVENELGQYRSK 1059 (1857)
Q Consensus 1032 l~e~~ee~q~~~r~~~~~~~e~~q~r~k 1059 (1857)
-|+.|-|+++---..+..||+-||+=
T Consensus 100 --~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 100 --RLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777777889999999874
No 44
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.49 E-value=11 Score=37.59 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCcchhhhhhh
Q psy10988 1169 NTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENI 1235 (1857)
Q Consensus 1169 ~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le~~l~renk~l~~~~~~e~~dl~~~~~~~ 1235 (1857)
+.|+.++.++.....+..+..+++.+|+..+.+.....- ..-++.+.|. .|+.|||||+-+.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~-~aE~~~~~ie----~ElEeLTasLFeE 66 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRT-KAEEEADKLN----KEVEDLTASLFDE 66 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHH
Confidence 456778888888888999999999999999988888777 7777778888 8888998777543
No 45
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=71.64 E-value=48 Score=31.83 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10988 198 IEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEV 277 (1857)
Q Consensus 198 iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~ 277 (1857)
++.++..-.+++..+.+....+ ..+...++..+..++..+..++.++.+.-.++..+-
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~----------------------~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENF----------------------AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666776666666 556778888888999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy10988 278 SGKLEQDAMVKELKSKV 294 (1857)
Q Consensus 278 sdk~~leaELqeLekev 294 (1857)
+-+.+++.|+..+.+-+
T Consensus 61 nvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 61 NVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 99999998888776544
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.61 E-value=56 Score=39.16 Aligned_cols=60 Identities=8% Similarity=-0.033 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhHHH
Q psy10988 324 QDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLA 385 (1857)
Q Consensus 324 eqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~rKL~ 385 (1857)
..+...+....+.....++..+..+..+.+++.++.+-..++..++++.. .+...+.++-
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 473 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL--ALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhh--hhHhcccHHH
Confidence 34444444444455555555555666666666666666666666666655 4443333333
No 47
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.47 E-value=1e+02 Score=31.63 Aligned_cols=71 Identities=24% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 292 SKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEM 366 (1857)
Q Consensus 292 keveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~ 366 (1857)
+.+..+...+..++...+.+...+- .+++.=..|+..-.-...-|.++..+++....+--.|+.+|.+.+.
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iR----eLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~ 105 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVR----ELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 4445555555555555555666666666666666666666654443
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=69.82 E-value=1e+02 Score=31.41 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 197 VIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLT 267 (1857)
Q Consensus 197 ~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~ 267 (1857)
.+..++..|..+...-..+..++ +.++..++.++..+..-......++++|..++..++
T Consensus 21 ~I~~LR~qid~~~~e~a~l~lel------------dn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVER------------DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 34444444444444444444444 445555555554444444444444444444444443
No 49
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=68.56 E-value=25 Score=34.04 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10988 198 IEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEV 277 (1857)
Q Consensus 198 iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~ 277 (1857)
++.++....+++..+.+....+ ..+...++..|..++.++..++.++.+.-.++..+-
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~----------------------~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSL----------------------ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp -------CTTHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555665555555 556777888888888999999999998888998888
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy10988 278 SGKLEQDAMVKELKSKVE 295 (1857)
Q Consensus 278 sdk~~leaELqeLekeve 295 (1857)
+-+.+++.|+..+.+-++
T Consensus 63 nvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 63 DIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHc
Confidence 888888888887766544
No 50
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.47 E-value=80 Score=30.54 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 92 PNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 92 ~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
|.+...-..|..++.+...+..++..+.+++.+.+.-+.++..
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677777888888888888888888888888888888888776
No 51
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.40 E-value=1.4e+02 Score=31.57 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 238 LEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLK 302 (1857)
Q Consensus 238 Le~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LE 302 (1857)
|...+.-...-.+++-.+..++.++...+.+...+.+....-+..++.+|...-..+.-++..-+
T Consensus 61 Lkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 61 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 33344444555666777777777777777777777777766666666665555555544444333
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.13 E-value=70 Score=32.81 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKE 271 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkq 271 (1857)
+.++.++.+.+..++.+|..+.+....++.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~ 66 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLEN 66 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444444444444444444333333
No 53
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=64.46 E-value=50 Score=38.61 Aligned_cols=53 Identities=6% Similarity=-0.113 Sum_probs=42.3
Q ss_pred hhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhhhc--cCCCCcccccC
Q psy10988 435 ELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQT--NEWGSPSSSDL 488 (1857)
Q Consensus 435 lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L~~--nekGra~ff~L 488 (1857)
+|+++.+-|+-+...-+++ .+||...++||++...+.+-|.. .-+.++.|+..
T Consensus 124 lLseiYDDI~ieDApyfsA-lyGpar~AIVV~Dl~~~~~~L~~l~dcPeDLyLIeg 178 (302)
T 3ibp_A 124 LLSEIYDDVSLEDAPYFSA-LYGPSRHAIVVPDLSQVTEHLEGLTDCPEDLYLIEG 178 (302)
T ss_dssp EHHHHSTTCCTTTHHHHHH-HTGGGGSEEECSSCHHHHHHHTTCCSSCSSCEEECS
T ss_pred ehhhhhcCCChhhHHHHHH-HhcccceeeEeCCHHHHHHHHhhccCCCcceEEeeC
Confidence 7999999899999999999 99999999999999999855522 22344555544
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.91 E-value=71 Score=39.86 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 255 HETLIA-KLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 255 lEkeIa-~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
.-++|+ .|+..+..++.+++.....+..|+.-|..+..++..||.-|+.+..-+.+=
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455 666667777777776667777777778888888888888888887777654
No 55
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.03 E-value=51 Score=40.64 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCcccccccCCCCCCCCCcccccCCCCchhhHHHHHhhhhhHhHHHHHHHHHhhcc
Q psy10988 13 PSADNAMQTDPELPLPLEPCQTTGSDNSDEISEAYDMLQNEYDDLKQKFDEVVNRT 68 (1857)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (1857)
|.|++..-.||.+-. +|.| |-.-.|-++..-+-+.....+|+...++|-|.|
T Consensus 65 ~~a~~c~~~~~~~G~---~CPT-tC~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 65 PDAGGCKHPLDELGV---LCPT-GCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp CCCSCEECSSTTTCE---EEEC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCccC---cCCC-ccHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhh
Confidence 666666666666654 4644 344455555555556666788888888886554
No 56
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=62.51 E-value=76 Score=31.37 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=16.9
Q ss_pred HHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 272 EKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 272 ElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
++..+..+-.++-++|..++++...+...|..++.+...+
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444
No 57
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.11 E-value=1.1e+02 Score=30.04 Aligned_cols=45 Identities=9% Similarity=0.257 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 90 LMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 90 ~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
+.|.+...-..|..+..++..+..++..+..++.+++.-+.++..
T Consensus 4 ~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 4 IPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666677778888888888888888888888888887777766
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.83 E-value=62 Score=33.91 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELE 309 (1857)
Q Consensus 241 lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE 309 (1857)
+-.+++.++..+-.++.+|..+...+..++.++-...-.......++..+..++..+...+..++..++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666555555555555555555555555555555544443
No 59
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=59.76 E-value=1.1e+02 Score=30.86 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=62.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHH
Q psy10988 956 KNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQ 1035 (1857)
Q Consensus 956 ~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~ 1035 (1857)
=.++++..++|-.... ....+.+.+..|..++.+++.+.....+... ..|.++ ...|...
T Consensus 7 LRK~aE~~KqL~~~~q---~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~--------------~~le~l---k~eL~~~ 66 (107)
T 2no2_A 7 LRKNAEVTKQVSMARQ---AQVDLEREKKELEDSLERISDQGQRKTQEQL--------------EVLESL---KQELATS 66 (107)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH---HHHHHHH
T ss_pred HHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH---HHHHHHH
Confidence 3578999999999988 8888999999999999998855555444443 122233 2335566
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhhh
Q psy10988 1036 VKELQDKLRSYTHVENELGQYRSK 1059 (1857)
Q Consensus 1036 ~ee~q~~~r~~~~~~~e~~q~r~k 1059 (1857)
+.|.+.+++.+++...+=.+|-++
T Consensus 67 ~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 67 QRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888999999998999888
No 60
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.55 E-value=89 Score=32.00 Aligned_cols=81 Identities=25% Similarity=0.307 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 197 VIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAE 276 (1857)
Q Consensus 197 ~iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l 276 (1857)
++..+...|..+++++..+...+ +.++.++.+.+..+ -.|..|+.+.+-.+..+..-
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~i------------delk~ei~q~~~~l-----------E~I~vLkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELI------------DKLKEEAEQHKIVM-----------ETVPVLKAQADIYKADFQAE 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHccc
Confidence 46667777777777777777777 55555444422222 24666666666666666666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 277 VSGKLEQDAMVKELKSKVETLEAS 300 (1857)
Q Consensus 277 ~sdk~~leaELqeLekeveElE~~ 300 (1857)
..++.+...++..+...+..+...
T Consensus 82 RadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 82 RHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHH
Confidence 666666666666666655555443
No 61
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=58.17 E-value=44 Score=32.47 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10988 260 AKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWT 312 (1857)
Q Consensus 260 a~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lq 312 (1857)
..++.++..+..+.-++..++......+..|+.+++.--..-.....++.++.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lr 55 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 55 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444555555555555555554444444444444443
No 62
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.07 E-value=2e+02 Score=30.87 Aligned_cols=140 Identities=19% Similarity=0.294 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHhhhHHHHHHhh
Q psy10988 111 LKTKENELHSRIEELEDKLQQKID-DEKSVS--YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKAN 187 (1857)
Q Consensus 111 LqeK~~eL~~EIeeLEakLqelK~-kEKeLs--keLnEl~~eIr~lEnekk~lqErL~~LedK~~~L~eEIe~~de~Kln 187 (1857)
|.+++-........|++.+...+. ++..-. +.++.....++.+.. +.........+|...+..+-..+..
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~-------~~~~~~~e~~~L~~~l~~E~~~R~~ 76 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKR-------ELSDRDDEVKRLREDIAKENELRTK 76 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777777777666 322111 333333334444333 2334555555566666553333333
Q ss_pred -HHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 188 -ESAIAKKDEVIEKLKAEL-ESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEAD 265 (1857)
Q Consensus 188 -~eql~~~ee~iEelk~EL-EelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~q 265 (1857)
+.....++.+++.+.+.| +.+.+.|...+-.. ..+...+..|..++-..+..|..+..+
T Consensus 77 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~-------------------~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTASLFDEANNMVADARKEK-------------------YAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777787776 33555555544444 233555566666666666667777777
Q ss_pred HHHHHHHHHHh
Q psy10988 266 LTRVKEEKEAE 276 (1857)
Q Consensus 266 l~~lkqElE~l 276 (1857)
+..++.-+...
T Consensus 138 l~~LK~v~~~m 148 (154)
T 2ocy_A 138 LKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHHHHh
Confidence 76666544433
No 63
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.46 E-value=24 Score=37.09 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=38.1
Q ss_pred hhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhh
Q psy10988 947 DFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETL-KQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASK 1025 (1857)
Q Consensus 947 d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~-~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~ 1025 (1857)
+......+++.+..+-.+.-..+++ ..+++..++-.||..| +++-+..-..++.+..+..|+..|.+ ++...
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~---~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~----ql~e~ 115 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEE---EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTE----QLREK 115 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----TTTHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 3344444444444444444444444 4445555555555443 44555555556666666666665544 33344
Q ss_pred hhhhHHHHHHHHHHH
Q psy10988 1026 TSIIQTLEIQVKELQ 1040 (1857)
Q Consensus 1026 ~~~~~~l~e~~ee~q 1040 (1857)
...++.+..|+.++.
T Consensus 116 e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 116 DMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHCC-----------
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665543
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.25 E-value=1.1e+02 Score=29.00 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 240 KLVVEKQELIEVIQNHETLIAKLE 263 (1857)
Q Consensus 240 ~lreE~~eLqeqi~qlEkeIa~L~ 263 (1857)
.+..++..|..++..++.++....
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.66 E-value=1.5e+02 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 244 EKQELIEVIQNHETLIAKLEADLTRVKEEKEAE 276 (1857)
Q Consensus 244 E~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l 276 (1857)
++..|..++..++.-++....+++.+++++.+.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555666666666554443
No 66
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.24 E-value=1.4e+02 Score=35.53 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=66.1
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccchhH
Q psy10988 1243 LSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEE 1322 (1857)
Q Consensus 1243 ~~El~k~~~~~e~e~~elq~ale~~e~~~~r~~~e~~q~~~~~~~~~l~ekee~~e~~r~~~~~~~~~~~~~~~~~~~~~ 1322 (1857)
+..+..-....+.-+.+++..++...++ ++.+.|+..+.+ .|.++|.+..+-|...+ ..
T Consensus 361 ~~~vl~G~~t~eeal~~~~~~i~~~l~~-~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~-------------------~~ 419 (471)
T 3mq9_A 361 VINAASGRQTVDEALKDAQTRITAARDG-LRAVMEARNVTH-LLQQELTEAQKGFQDVE-------------------AQ 419 (471)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------------------HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHh-hHHHHHhhhHHH-HHHHHHHHHhhhHHHHH-------------------HH
Confidence 3444444445566666666666654433 566778888888 89999999999999888 32
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhHhhhhhhHhHHhhhhHHHhhhhhhh
Q psy10988 1323 HVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQYNLQLSKSQESS 1372 (1857)
Q Consensus 1323 h~~~l~~~~~mq~~L~~E~~~~~~e~~~~k~~~~~le~~~~~le~~l~~a 1372 (1857)
.--.-+-.=.+++||+.++-... .+++ .||+.+-.++.+|..+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 420 AATANHTVMALMASLDAEKAQGQ---KKVE----ELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHH
Confidence 22222233678999999988722 2444 5777766665555443
No 67
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=53.79 E-value=18 Score=32.87 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=34.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEE 627 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ 627 (1857)
.|..+|..+.++++.++.-|+.+.+.||.||.-+-.++.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999998877754
No 68
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.58 E-value=16 Score=45.79 Aligned_cols=152 Identities=20% Similarity=0.344 Sum_probs=50.8
Q ss_pred HHhHHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHH
Q psy10988 1532 NQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQK 1611 (1857)
Q Consensus 1532 Ke~kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QR 1611 (1857)
++.+..+.++|=+-.. + -+.-..+|....+|..||..+++.......+ ..++...+.-|.++.+.++.+.
T Consensus 310 ~e~~~~~~~e~~~l~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~l~e~~~~~~~e~ 379 (575)
T 2i1j_A 310 REEKLAKQAQREKLQL---E---IAARERAEKKQQEYQDRLRQMQEEMERSQAN----LLEAQDMILRLEEQLRQLQAAK 379 (575)
T ss_dssp HHHHHHHHHHHTTCCS---C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHH
Confidence 5567777777755211 1 1234467778888999999998886666653 3333444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1612 EKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSA 1691 (1857)
Q Consensus 1612 Deeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeEAee~L~a 1691 (1857)
..+..+...++....+ ++..-......... |..++.++...
T Consensus 380 ~~l~~~~~~~e~~~~~-----------------------------l~~~~~~~~~e~~~-------l~~~~~~~~~~--- 420 (575)
T 2i1j_A 380 EELEQRQNELQAMMQR-----------------------------LEETKNMEAAERQK-------LEDEIRAKQEE--- 420 (575)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-----------------------------HHHHHHhHHHHHHH-------HHHHHHHHHHH---
Confidence 5444443333332222 11111101111111 22345555554
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10988 1692 AGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVNN 1732 (1857)
Q Consensus 1692 AsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~~ 1732 (1857)
++++....+.+..+-..|+.++..+.+.+.++..+|.+..+
T Consensus 421 ~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 421 VSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888888888888888888888888888888888877664
No 69
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.80 E-value=1e+02 Score=30.31 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAE 276 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l 276 (1857)
..+..++...+..+...+..+...+..++..+..+
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444443333
No 70
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=52.77 E-value=40 Score=34.15 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=45.0
Q ss_pred cchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccCCCcc
Q psy10988 642 VDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSV 705 (1857)
Q Consensus 642 ~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~~ek~ 705 (1857)
++..-+-+|...+++||+++-..|+--=++...-++-+-++.+|...+-|+ .||-+.+|+-++
T Consensus 39 id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl-gKf~Kp~~~~~~ 101 (106)
T 1j1d_B 39 IDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN-QKVSKTRGKAKV 101 (106)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh-cCccCCCCCCCc
Confidence 444344479999999999999999999999999999999999999999999 999887665444
No 71
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=52.31 E-value=2.4e+02 Score=29.91 Aligned_cols=63 Identities=16% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 249 IEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGW 311 (1857)
Q Consensus 249 qeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~L 311 (1857)
.+++.-++.++................+..++....+.++.++-.-..+..+-+.....+..|
T Consensus 79 ~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 79 ARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333334444433333333333333333333
No 72
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.31 E-value=90 Score=31.35 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=49.4
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhh
Q psy10988 583 LTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLI 662 (1857)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~ 662 (1857)
+..+..+|..++.....++..|...|.....+|...|....++..|.-+|.-.|=.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe------------------------ 65 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------------------------ 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 34444555556666666666666666666666666666666666665555555533
Q ss_pred hHHHhhHHHHHHHHhhhHHHHHHHHhHHHh
Q psy10988 663 NVEALVNQAQVEKQALDGKYEELKEKYEQM 692 (1857)
Q Consensus 663 ~~E~~~~~l~~~k~kle~~~~eLk~~~e~~ 692 (1857)
+--.||+....+.-+++.....|+.+|.|.
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112345555555555666666666666554
No 73
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.22 E-value=2.1e+02 Score=27.93 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 94 VEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 94 ~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
+....+.+..+...+..+...+..+.+++..+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556667777777777777777777777777777776653
No 74
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.89 E-value=1.6e+02 Score=28.59 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 199 EKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVK 270 (1857)
Q Consensus 199 Eelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lk 270 (1857)
..++..+..+...-..+..++ +.++..++.++..+.+-......++++|..++..++..-
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~------------dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~ 62 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVER------------DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555555666 666666666666666666666666666666666655443
No 75
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.46 E-value=46 Score=34.29 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10988 1535 TLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSA 1583 (1857)
Q Consensus 1535 kl~~ELERLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS 1583 (1857)
.|..++++|+.++..+.- .+...+.+|+.++..||..+....
T Consensus 19 ~Lkreie~lk~ele~l~~-------E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 19 RLYREISGLKAQLENMKT-------ESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888866 677777777777777777755433
No 76
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=46.20 E-value=2.3e+02 Score=29.65 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKV 294 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekev 294 (1857)
+.+...|....-++...+..+......+......+......+...+..+...+
T Consensus 28 ~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 28 RHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444344344444433434444333333333333333333333333
No 77
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=45.39 E-value=67 Score=31.83 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10988 198 IEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEV 277 (1857)
Q Consensus 198 iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~ 277 (1857)
+..++....+++..+.+....+ ..+...++..+..++.++..++.++.+.-.++..+-
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~----------------------~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLL----------------------AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666666666 556677788888888888888888888888888888
Q ss_pred hhhHHHHHHHHHHHHH
Q psy10988 278 SGKLEQDAMVKELKSK 293 (1857)
Q Consensus 278 sdk~~leaELqeLeke 293 (1857)
+-+.+++.|+..+.+-
T Consensus 72 nvKl~Le~EIatYrkL 87 (95)
T 3mov_A 72 DVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887776543
No 78
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.13 E-value=98 Score=30.22 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQL 361 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqL 361 (1857)
+++-..+..+.+++....+.+.+....++.++..-+++|
T Consensus 33 KekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 33 KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 79
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.72 E-value=3.4e+02 Score=32.27 Aligned_cols=67 Identities=28% Similarity=0.320 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10988 1604 VKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQ 1683 (1857)
Q Consensus 1604 l~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLe 1683 (1857)
-++|.+++++.+..+...+.+..- .|+..|- +|..-|++.+... ++...|+++|+.+.++|.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAAT-----ANHTVMA--LMASLDAEKAQGQ-----------KKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhh-----cchhHHH--HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 445566666666666555554333 3444331 3333344432222 244567788888888777
Q ss_pred HHHHH
Q psy10988 1684 EARES 1688 (1857)
Q Consensus 1684 EAee~ 1688 (1857)
++.+.
T Consensus 461 ~~~~~ 465 (471)
T 3mq9_A 461 DASAE 465 (471)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 80
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=40.97 E-value=1.3e+02 Score=31.67 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=55.4
Q ss_pred HhhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhh
Q psy10988 627 EDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 627 ~ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~ 698 (1857)
+-+.+|.+....- +++..-+-+|....++||+++...|+--=++...-++-+-++.+|...+.|+-+||-+
T Consensus 41 eKkkiLaER~~pL-~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKfkK 111 (133)
T 1j1d_C 41 EKGRALSTRAQPL-ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKR 111 (133)
T ss_dssp HHHHHHHHHTCCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcccCC
Confidence 3356677776553 3666556689999999999999999999999999999999999999999999998865
No 81
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.15 E-value=1.9e+02 Score=34.93 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10988 1542 RLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSAT 1584 (1857)
Q Consensus 1542 RLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~ 1584 (1857)
||+--|++.+. ....++.+|+..|..+-..-+.+..
T Consensus 53 rLqg~Ldk~er-------~~~~rIe~L~~~L~~~s~s~~~~~~ 88 (390)
T 1deq_A 53 RMKGLIDEVDQ-------DFTSRINKLRDSLFNYQKNSKDSNT 88 (390)
T ss_pred hHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 36666777776 7777777777777776665443333
No 82
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.07 E-value=1.5e+02 Score=29.67 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 257 TLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQK 304 (1857)
Q Consensus 257 keIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~ 304 (1857)
..|..|+.++.-.+.-+....+++.+...++..+...+..+...+..+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666665555555555554444333
No 83
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=38.20 E-value=36 Score=34.53 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=55.5
Q ss_pred hhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccC
Q psy10988 629 TSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTG 701 (1857)
Q Consensus 629 k~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~ 701 (1857)
+.+|.+....- +++..-+-+|...+++||+++-..|+--=++...-++-+-++.+|...+-|+ .||-+.+|
T Consensus 27 kkiLaER~~pL-~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl-gKfkKp~~ 97 (107)
T 1ytz_T 27 KKVLAERRKPL-NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA-QKHSKKAG 97 (107)
T ss_dssp HHHHHHTCCCC-CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCC----
T ss_pred HHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh-cCccCCCC
Confidence 45565555432 4555445589999999999999999999999999999999999999999999 99888665
No 84
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.58 E-value=6.2e+02 Score=31.35 Aligned_cols=34 Identities=3% Similarity=-0.035 Sum_probs=14.8
Q ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 275 AEVSGKLEQDAMVKELKSKVETLEASLKQKEQEL 308 (1857)
Q Consensus 275 ~l~sdk~~leaELqeLekeveElE~~LEe~~eel 308 (1857)
.++......+..+......+.++...++.+...+
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 85
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.68 E-value=3.2e+02 Score=26.64 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhhccccchh-----------HhHhHHHHHHHHHH
Q psy10988 591 DEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDS-----------IEKTLRNEIQELHA 659 (1857)
Q Consensus 591 ~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~~~~~~d~-----------ee~~l~~~i~el~~ 659 (1857)
..++..+-..|..+...+......+..++.....+ .+....|.. +++. .+++.+.-+..|..
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~----~~~~~eL~~---l~~d~~vy~~iG~vfv~~~~~ea~~~L~~ 77 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEA----KKALDEIES---LPDDAVVYKTVGTLIVKTTKDKAVAELKE 77 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT---SCTTCCEEEEETTEEEEECHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc---CCCCcHhHHHhhHHHhhccHHHHHHHHHH
Confidence 34556666667777666666665544444333222 222333333 3321 11288888999999
Q ss_pred hhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHh
Q psy10988 660 KLINVEALVNQAQVEKQALDGKYEELKEKYEQM 692 (1857)
Q Consensus 660 rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~ 692 (1857)
|.+..+.....+......++.++.+|+..+..+
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888888888888888887664
No 86
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.54 E-value=3.3e+02 Score=26.75 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10988 95 EDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID-----DEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKD 169 (1857)
Q Consensus 95 e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~-----kEKeLskeLnEl~~eIr~lEnekk~lqErL~~Led 169 (1857)
..+++.+..+-+.|..|..+-.. |+.+|...+. +..-|..++.++...|..+..++..+.-++..+..
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~-------Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKI-------LLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444 4444444443 33333355666666666666666665555555444
Q ss_pred HHh
Q psy10988 170 KLR 172 (1857)
Q Consensus 170 K~~ 172 (1857)
-..
T Consensus 85 ~~~ 87 (93)
T 3s4r_A 85 DIM 87 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 87
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=35.42 E-value=7.5 Score=34.13 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 1699 LNQKSQTIQELTEKVNQLMEELNKKEAKLKEV 1730 (1857)
Q Consensus 1699 LrkKq~qIeeLkeeaeil~E~L~kar~KL~~~ 1730 (1857)
|++.|++++++.+.+++++..|++++.+++..
T Consensus 1 ~RKlQrELeEa~Erae~ae~~vnkLR~k~R~~ 32 (45)
T 3zwh_Q 1 YRKLQRELEDATETADAMNREVSSLKNKLRRG 32 (45)
T ss_dssp CCSSSSHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35678899999999999999999999999764
No 88
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.85 E-value=4.3e+02 Score=27.87 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10988 238 LEKLVVEKQELIEVIQNHET 257 (1857)
Q Consensus 238 Le~lreE~~eLqeqi~qlEk 257 (1857)
+-.++.+...+++.+.....
T Consensus 62 i~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 62 IGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 33333333333443333333
No 89
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.63 E-value=3.9e+02 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 321 GNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369 (1857)
Q Consensus 321 eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~EIe 369 (1857)
.+-+=...++..|..|+..|...-..+..|+.-++.+..+|..++..|+
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666666666666666666666666666666666666664
No 90
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.64 E-value=3.4e+02 Score=27.22 Aligned_cols=82 Identities=23% Similarity=0.305 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy10988 199 EKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVS 278 (1857)
Q Consensus 199 Eelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~s 278 (1857)
+.+...|..+++++.-+...+ +.+++.+.+.+... +.+.-+..++.++..++..-..-.+++..
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~i------------d~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~ 68 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELI------------DKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666655555555 55544443333222 45555666677777777777777777777
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10988 279 GKLEQDAMVKELKSKVET 296 (1857)
Q Consensus 279 dk~~leaELqeLekeveE 296 (1857)
.+..+...+..+...+..
T Consensus 69 eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp TTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666665554433
No 91
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.14 E-value=1e+02 Score=33.03 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEME 367 (1857)
Q Consensus 323 eeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqLeele~E 367 (1857)
+.++..++.++.+....++.++..+..++.+.+.+++++..++.+
T Consensus 81 ~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 81 EQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444333
No 92
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=31.90 E-value=1.9e+02 Score=31.78 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=54.8
Q ss_pred hhhHHHHHhhhccccchhHhHhHHHHHHHHHHhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhh
Q psy10988 628 DTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698 (1857)
Q Consensus 628 ek~~L~~ql~~~~~~~d~ee~~l~~~i~el~~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~ 698 (1857)
-+.+|.+....- +++..-+-+|....++||+++...|+--=++...-++-+-++.+|...+-|+-+||-+
T Consensus 42 KkkiLaER~kPL-nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGKFkK 111 (180)
T 1j1e_C 42 KGRALSTRAQPL-ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKR 111 (180)
T ss_dssp HHHHHHHHSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhcccc
Confidence 356666666543 5666556689999999999999999999999999999999999999999999987765
No 93
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.34 E-value=2.8e+02 Score=28.61 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKE 274 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE 274 (1857)
+..+..|..+++.++.+++.-+...+....+.+
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e 71 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCE 71 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555554444444443333333
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.31 E-value=38 Score=34.08 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=56.1
Q ss_pred CCC-cchhhhhhhhhHHHhhhccchhhhhHhhhceeeeccccc-cCCCCCcc----cchhhhhhhhhhhccHHHHHHHHH
Q psy10988 527 SHP-VDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQ-ESDPMNNS----LDNTAQLTAEKERLDEEVTVLSQE 600 (1857)
Q Consensus 527 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e 600 (1857)
|-| -..+|..-..+|+-|-+||..||.+++.|-+-+++.+++ ..||-+.- -.|.|-.. .....+++..|..|
T Consensus 6 ~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a--~~~~~~~~e~Lq~E 83 (100)
T 1go4_E 6 SFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA--RQRLREDHSQLQAE 83 (100)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH--HHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH--HHHHHHHHHHHHHH
Confidence 444 345788888999999999999999999999999997774 45673321 12222221 12235778888888
Q ss_pred HHHHHHHHHH
Q psy10988 601 NIELKKKLEQ 610 (1857)
Q Consensus 601 ~~~~k~~l~~ 610 (1857)
+..|+..+..
T Consensus 84 ~erLr~~v~~ 93 (100)
T 1go4_E 84 CERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8888877644
No 95
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=31.16 E-value=5.7e+02 Score=28.15 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQ--DAMVKELKSKVETLEASLKQKEQELE 309 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~l--eaELqeLekeveElE~~LEe~~eelE 309 (1857)
..+..++.....++......-|.-..-...+...+...+.+.+.+....... +.++..|-..|....+.-.-.+.+++
T Consensus 103 ~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~ 182 (192)
T 2p22_C 103 RILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLA 182 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333335566667788888888888888888888776 67899999999999999999999999
Q ss_pred hhhhcc
Q psy10988 310 GWTDND 315 (1857)
Q Consensus 310 ~Lqqe~ 315 (1857)
.|.+--
T Consensus 183 rw~e~~ 188 (192)
T 2p22_C 183 TWDKQG 188 (192)
T ss_dssp HHTTCS
T ss_pred HHHhcc
Confidence 997543
No 96
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=30.58 E-value=2.8e+02 Score=31.16 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 245 KQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQEL 308 (1857)
Q Consensus 245 ~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eel 308 (1857)
..+-.-.+..|+.+|..++..++..+.|+......+..++..+-..+.++..+...+..+...+
T Consensus 72 NDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 72 NDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 3333334556666666666666666666666655555555555444444444444444444433
No 97
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.52 E-value=4.1e+02 Score=25.99 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=7.2
Q ss_pred HHHHHHHhHhhhHHHHHHHH
Q psy10988 269 VKEEKEAEVSGKLEQDAMVK 288 (1857)
Q Consensus 269 lkqElE~l~sdk~~leaELq 288 (1857)
+..+.+++..+...+...+.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 98
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.23 E-value=3.5e+02 Score=30.97 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10988 94 VEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKD 169 (1857)
Q Consensus 94 ~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~kEKeLskeLnEl~~eIr~lEnekk~lqErL~~Led 169 (1857)
+..++.....+...+.-+-.++.-...+|.++..+|+.+..+.+.+-..|.-++..--.++.++....+|+.|+++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888888888888877766666666666666667777777777666654
No 99
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.64 E-value=1.3e+02 Score=28.74 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10988 228 WGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEV 277 (1857)
Q Consensus 228 ~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~ 277 (1857)
.|...+++..+.....++......|-.++++|..++..+..++.++..+.
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666666666677777777777777777777777777777666554
No 100
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.41 E-value=3.8e+02 Score=24.87 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 1680 HQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKK 1723 (1857)
Q Consensus 1680 ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~ka 1723 (1857)
.++++.... |.+.++.+.....+|.+|+..+..++-.|.-+
T Consensus 35 ~k~eel~~~---~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEA---ANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555544 77777778888888888888888777776654
No 101
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.57 E-value=4.5e+02 Score=28.32 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy10988 280 KLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDN 316 (1857)
Q Consensus 280 k~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E 316 (1857)
...++..+..++.++.+..+.++.++-++..++-..+
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444433333333333
No 102
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=26.52 E-value=39 Score=36.68 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=39.2
Q ss_pred hHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhhhccCCCCcccccCcc-hhhhhhhh
Q psy10988 436 LNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNT-LREESGLL 498 (1857)
Q Consensus 436 LsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L~~nekGra~ff~Ld~-~~~~~~~~ 498 (1857)
+.|++. |++.|+.|+.. +| .+.+||++.+.|..+. ++..++.+++ +-.-+|.+
T Consensus 110 a~dlv~-~d~~~~~a~~~-ll---g~tlvv~dl~~A~~l~-----~~~r~VTldGd~i~~~G~~ 163 (189)
T 3nwc_A 110 AVDVIE-YDQKIENAVKF-AL---GDTVIVNSMEEARPHI-----GKVRMVTIEGELYERSGAI 163 (189)
T ss_dssp GGGGEE-CCGGGHHHHHH-HH---TTEEEESCSGGGGGGT-----TTSEEEETTSCEECTTSCE
T ss_pred Eeeeec-cCHHHHHHHHH-Hh---CCEEEECCHHHHHHHh-----CCCeEEeCCCcEEECCEEE
Confidence 789999 99999999988 54 5789999999998763 3566666665 22334443
No 103
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.13 E-value=2.3e+02 Score=27.79 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHhHHHHHH------HHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy10988 1631 SLTNLQIVLE------QFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQE 1684 (1857)
Q Consensus 1631 sL~NLQ~VLE------QFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv~sLQ~QLeE 1684 (1857)
++-|||++|+ |-=+++=..+.........+|.+...++..|..+|..++.++++
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 104
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.29 E-value=3.4e+02 Score=27.74 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10988 1596 QVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLI 1675 (1857)
Q Consensus 1596 QVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq~kv 1675 (1857)
.++.||..+...+.|+--...++..+.+++- .+-|--=...+.+=+..+ ..|+.|+
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E-----------------~DPDevNK~tl~~R~~~V-------salq~Ki 91 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVE-----------------VDPDDVNKSTLQNRRAAV-------STLETKL 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HCCCHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------CCCcHHHHHHHHHHHHHH-------HHHHHHH
Confidence 5677888888888888877777766665433 333322111333333334 6788889
Q ss_pred HHHHHHHHHHHH
Q psy10988 1676 STLQHQLQEARE 1687 (1857)
Q Consensus 1676 ~sLQ~QLeEAee 1687 (1857)
..||++|+++-+
T Consensus 92 aeLKrqLAd~va 103 (107)
T 2k48_A 92 GELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999977654
No 105
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.04 E-value=2.6e+02 Score=27.66 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=49.1
Q ss_pred HHhHhHHHHHHHHHhhHHhhhchhh---hHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhchHHHH
Q psy10988 925 EKCKQYEDKCIELESTLDAKLTDFS---TKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDR 1001 (1857)
Q Consensus 925 ~~~k~~E~~~~e~~~k~~~~~~d~~---~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~~~~~~~eee~ 1001 (1857)
..-..||.++..+-..+-..+..+. ....| +..+.++.+.|++++. .|.||.-+.+.+..+
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~~~e~r-k~~i~~ie~~ldEA~e---Ll~qMelE~r~~p~s------------ 78 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEK-KKLVRDFDEKQQEANE---TLAEMEEELRYAPLT------------ 78 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHTSCHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHhCCHH------------
Confidence 3445566666555444444333321 11222 2236778888888888 888888777654322
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHH
Q psy10988 1002 KILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQ 1035 (1857)
Q Consensus 1002 k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~ 1035 (1857)
.+. .+...|++++++++.|.-.
T Consensus 79 -~R~-----------~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 79 -FRN-----------PMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp -HHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred -HHH-----------HHHHHHHHHHHHHHHHHhh
Confidence 223 5566788888888877644
No 106
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=24.64 E-value=7.1e+02 Score=27.15 Aligned_cols=124 Identities=10% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHH---
Q psy10988 209 EKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDA--- 285 (1857)
Q Consensus 209 EkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~lea--- 285 (1857)
+..++-....+ ..+-..+.....++..|-+.+..+..+|.-.+.-+.+-............-.+.
T Consensus 9 ~~~ve~v~~~L------------~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~ 76 (170)
T 3l4q_C 9 EDSVEAVGAQL------------KVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSK 76 (170)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTT
T ss_pred cccHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 286 -------------MVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLA 348 (1857)
Q Consensus 286 -------------ELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLE 348 (1857)
|+..+.....-+..++..+..-...|..... ......-.++.++..++-.+-.+....+
T Consensus 77 ~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~----~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 77 EYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELR----AQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp GGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHH
No 107
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.38 E-value=1.8e+02 Score=27.93 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=36.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10988 88 FELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKID 134 (1857)
Q Consensus 88 ~~~~~~~e~l~ekl~eLneqi~eLqeK~~eL~~EIeeLEakLqelK~ 134 (1857)
++-|..+..+...+..-.+++......+..+..++.+++..+.+++.
T Consensus 15 ~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 15 IEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788899888888888888888888888888888888887765
No 108
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=24.30 E-value=3.9e+02 Score=30.04 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDN 314 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe 314 (1857)
..++..+.-.+-.|+.+|......+..++.|+...+.++..+...++.+...+...+.+|..+..+.-.+...
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s~t 155 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTAT 155 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSSCC
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhhhh
Confidence 4455666667778888999999999999999999999999999999999999999999999999988765543
No 109
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.20 E-value=2.9e+02 Score=26.31 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q psy10988 242 VVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSK 293 (1857)
Q Consensus 242 reE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~sdk~~leaELqeLeke 293 (1857)
..|...++..|..++.++..++.++...-.++..+-+-+.+++.|+..+.+-
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777777777777777776665543
No 110
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=23.21 E-value=55 Score=34.20 Aligned_cols=52 Identities=6% Similarity=-0.096 Sum_probs=38.7
Q ss_pred cchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHhHhhhccCCCCcccccCcc
Q psy10988 433 STELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNT 490 (1857)
Q Consensus 433 ~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~e~L~~nekGra~ff~Ld~ 490 (1857)
...+.|++. |++.|+.|+.. +|+ +.+||++.+.|..+..... .+..+..+++
T Consensus 98 ~~~a~dlv~-~d~~~~~a~~~-llg---~tlv~~dl~~A~~~~~~~~-~~~r~VTldG 149 (161)
T 3l51_A 98 VHVALSLVD-YKPELQKGMEF-VFG---TTFVCNNMDNAKKVAFDKR-IMTRTVTLGG 149 (161)
T ss_dssp EEEGGGGEE-CCGGGHHHHHH-HHT---TCEEESSHHHHHHHHHCTT-TCCCEEETTS
T ss_pred hhHHHHHhc-CCHHHHHHHHH-HcC---CEEEECCHHHHHHHHHhcC-CCCeEEeCCC
Confidence 346899999 99999999998 654 7899999999986554422 2445555553
No 111
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.10 E-value=2.1e+02 Score=29.36 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy10988 1593 SNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELT 1672 (1857)
Q Consensus 1593 a~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~~k~ekLq 1672 (1857)
++..++.||..+...+.|+--...+|..+.+.+-+ .=-=-|.+ .+.+=+..+ ..|+
T Consensus 20 ~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~-DPDevNK~----------------tl~~R~~~V-------s~lq 75 (113)
T 4fi5_A 20 GSMTMEELQREINAHEGQLVIARQKVRDAEKQYEK-DPDELNKR----------------TLTDREGVA-------VSIQ 75 (113)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHH----------------HHHHHHHHH-------HHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHH----------------HHHHHHHHH-------HHHH
Q ss_pred HHHHHHHHHHHHHHH
Q psy10988 1673 QLISTLQHQLQEARE 1687 (1857)
Q Consensus 1673 ~kv~sLQ~QLeEAee 1687 (1857)
.++..|+++|.++-+
T Consensus 76 ~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 76 AKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 112
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.80 E-value=6.6e+02 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 234 VKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVK 270 (1857)
Q Consensus 234 ~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lk 270 (1857)
++..|...++-+....-+...+..-+..|...+...+
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ek 66 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 66 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333
No 113
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.42 E-value=7.3e+02 Score=30.85 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10988 1542 RLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSAT 1584 (1857)
Q Consensus 1542 RLR~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~ 1584 (1857)
||+--|++.++ ..-.++.+|+.+|..+...-..+..
T Consensus 51 rLqglL~kqer-------dv~~rI~kLkn~L~~~s~s~~~s~~ 86 (491)
T 1m1j_A 51 RMQGIIDDTDQ-------NYSQRIDNIRQQLADSQNKYKTSNR 86 (491)
T ss_dssp THHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred chhhHHHHhhh-------hHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45566777777 6777788888888777766444444
No 114
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.24 E-value=2e+02 Score=25.87 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHH
Q psy10988 1562 EQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSL 1607 (1857)
Q Consensus 1562 E~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~L 1607 (1857)
+++..+|+..+..+-.+ +..++.+...++.+|..|.++|..+
T Consensus 8 ~~r~~~l~~~l~~L~~r----N~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAAR----NSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
No 115
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=22.15 E-value=1.7e+02 Score=30.60 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH------hHHHHHHHHHHhhhhHHH
Q psy10988 594 VTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK------TLRNEIQELHAKLINVEA 666 (1857)
Q Consensus 594 ~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~------~l~~~i~el~~rl~~~E~ 666 (1857)
|+.+-.|+.+...+|..++.-++-|++++..+.+..+.+..++.. +-++.-...+ -++..|+==...-.++--
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKr 83 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKR 83 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999999999999999999988888877 4444444433 333333322333334444
Q ss_pred hhHHHHHHHHhhhHHHHHH
Q psy10988 667 LVNQAQVEKQALDGKYEEL 685 (1857)
Q Consensus 667 ~~~~l~~~k~kle~~~~eL 685 (1857)
.-++|++.--+|=.+|.+.
T Consensus 84 kLAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 84 KLAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666655553
No 116
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.91 E-value=2.1e+02 Score=27.46 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10988 1560 KAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEK 1613 (1857)
Q Consensus 1560 ~aE~r~kELr~RL~elEEkl~~SS~A~tsAs~ra~qQVEsLQ~Ql~~Le~QRDe 1613 (1857)
.++.|+.+|..|+.-.|.-+-..|.+++.. .++|..|+.+++.|......
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Q----q~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADA----RLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 577888999999988888877777754433 46777777777776665443
No 117
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.90 E-value=3e+02 Score=27.94 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 330 KKENEEIKEKLAKQESTLAKLKTHSESLQKQL 361 (1857)
Q Consensus 330 EkEIEELeeeLEelerKLEeLQnE~EeLKsqL 361 (1857)
..+..+....++.+.+..+.++.....++.+|
T Consensus 50 ~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 50 RRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444443333333333333
No 118
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=21.74 E-value=1e+03 Score=27.94 Aligned_cols=322 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 232 DDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEK------EAEVSGKLEQDAMVKELKSKVETLEASLKQKE 305 (1857)
Q Consensus 232 d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqEl------E~l~sdk~~leaELqeLekeveElE~~LEe~~ 305 (1857)
......+.........|..-...+...+..+..=+...+..+ =........+-..++.|..++.....++..+.
T Consensus 113 ~~r~~~l~~~~~R~~~Le~~~~~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~ 192 (476)
T 1hci_A 113 KGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 192 (476)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhc-------cCC
Q psy10988 306 QELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQK---QLLEKEMELEEWG-------NND 375 (1857)
Q Consensus 306 eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKs---qLeele~EIeel~-------e~~ 375 (1857)
..-..|...---++..+..++..+...-..+...+......|.........+.. +...--..+..|- ...
T Consensus 193 ~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~~~~~~~~e~l~~~f~~~a~~~~~Wl~~~~~~l~~~ 272 (476)
T 1hci_A 193 AIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDM 272 (476)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccccccCCC----CCCCCcCcc----chhHhhhhhcchhH
Q psy10988 376 SWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGE----GDDWGTGNS----TELNNLRAKCSEFE 447 (1857)
Q Consensus 376 ~L~~~~rKL~akq~E~kvLks~Ie~LEgf~~svk~l~k~~~~~~~~~~~----~~~W~kg~~----~lLsDli~~v~eEy 447 (1857)
.++..-..+..+...+..++..+...+....++..+......-+...+. ......... ....++.. ....-
T Consensus 273 ~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~L~~~w~~L~~-~~~~R 351 (476)
T 1hci_A 273 FIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQ-LVPIR 351 (476)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCCTTCSSCHHHHHHHHHHHHH-HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhccHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHhhHHHH-----hchheecCchHHhHhhhcc-------CCCCcccccCcchhhhhhhhHhhhhhhhHHHHHHHHH
Q psy10988 448 KTIVELKSQEEL-----LKQALIDKENELSEWGQTN-------EWGSPSSSDLNTLREESGLLRQKLSEQKVIISKLKTQ 515 (1857)
Q Consensus 448 ~~AVE~~~Lee~-----L~~~VVd~~dea~e~L~~n-------ekGra~ff~Ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1857)
+..++. .+..+ +-+-+..+.+++..||... ..|. .-.+..+-....-|..-+...+-.|..|...
T Consensus 352 ~~~L~~-~l~~~~~~~~L~~~F~~~a~~~~~Wl~e~e~~l~~~~~~~--~~~le~~l~~~~~~~~el~~~~~~~~~l~~~ 428 (476)
T 1hci_A 352 DQSLQE-ELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQI--TGALEDQMNQLKQYEHNIINYKNNIDKLEGD 428 (476)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTT--TTSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhccCCCCCCCcchhhhhhhhhHHHhhhccchhhhhHhh
Q psy10988 516 LEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQ 557 (1857)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1857)
-....+......+..+..+.+-.+|..-|..--..-...+|+
T Consensus 429 ~~~l~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~~~~~~lE~ 470 (476)
T 1hci_A 429 HQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVET 470 (476)
T ss_dssp HHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.66 E-value=1.6e+02 Score=29.62 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhhhHHHHHHHHhHHHhhhhhhhccC-CCccchhhhhhhhhh---------hHHHHHHHHhhhhhhhh
Q psy10988 667 LVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTG-KDSVDIDTLIKNLQS---------KKEELCRLLDEKNTLDN 733 (1857)
Q Consensus 667 ~~~~l~~~k~kle~~~~eLk~~~e~~e~k~e~~~~-~ek~~~~~~ik~l~~---------~~e~i~kl~kEkk~l~e 733 (1857)
-++.+..+...|+.++..|.+.++.||.+++.-+. .+-.+..++|=-+.. ....+.+|..|-..|-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999988544 233334445443333 45556666555554443
No 120
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.44 E-value=1.5e+02 Score=27.77 Aligned_cols=42 Identities=31% Similarity=0.456 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy10988 590 LDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSI 631 (1857)
Q Consensus 590 ~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~ 631 (1857)
|.-+|..+.++++.++.-++.+.+.||.||.-+-.++...|+
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 456899999999999999999999999999999888877764
No 121
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.33 E-value=5.6e+02 Score=26.20 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 280 KLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKL 350 (1857)
Q Consensus 280 k~~leaELqeLekeveElE~~LEe~~eelE~Lqqe~E~~~~eleeqLeeLEkEIEELeeeLEelerKLEeL 350 (1857)
+..+..++...++.+......+.+....++.=-+.++ +..+......+..++..|.++++.+.+.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevN------K~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVN------KSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443333333 4444444444444444444444444443
No 122
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.32 E-value=4e+02 Score=26.57 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchh----------HHHHHHHHHHHHHHHHHHHHhhH
Q psy10988 339 KLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDND----------KLATLQQENKVLNEKVSELQTQL 405 (1857)
Q Consensus 339 eLEelerKLEeLQnE~EeLKsqLeele~EIeel~e~~~L~~~~r----------KL~akq~E~kvLks~Ie~LEgf~ 405 (1857)
+...+..++..+..++..-......++..+.-+..|..++.... +|+.++.+..-+++.+..+++-+
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~~ 92 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAESRV 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 44455556666666666666667777777777777777765554 66666666666666666655543
No 123
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.09 E-value=6e+02 Score=24.95 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10988 198 IEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEV 277 (1857)
Q Consensus 198 iEelk~ELEelEkeleEiree~~~~~~~~~~~~~d~~KeeLe~lreE~~eLqeqi~qlEkeIa~L~~ql~~lkqElE~l~ 277 (1857)
|..+...++++=+.|+-+..+- ..+...+..++..-.. .-..-++..|..++.+++.+..+.-++.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN------------~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQN------------KILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554 4444444333322111 1112234555555555555555554444
Q ss_pred hhhHHHHHHHHHHH
Q psy10988 278 SGKLEQDAMVKELK 291 (1857)
Q Consensus 278 sdk~~leaELqeLe 291 (1857)
.++..+..++..++
T Consensus 77 ~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 77 VERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 124
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.77 E-value=2.1e+02 Score=27.35 Aligned_cols=40 Identities=15% Similarity=0.407 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10988 322 NEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQL 361 (1857)
Q Consensus 322 leeqLeeLEkEIEELeeeLEelerKLEeLQnE~EeLKsqL 361 (1857)
+.++++.++..-..++.++..++..+++-+.+...++.++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444444443333
No 125
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.62 E-value=82 Score=33.24 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhhhhH-HHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 649 TLRNEIQELHAKLINV-EALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 649 ~l~~~i~el~~rl~~~-E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
.++.++-+|++-|=++ -.||+....+.-+++.....|++.+.+-+.
T Consensus 71 ~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 71 KLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444322 233444444444444444555554444444
No 126
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.19 E-value=5.3e+02 Score=25.10 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy10988 263 EADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDN 314 (1857)
Q Consensus 263 ~~ql~~lkqElE~l~sdk~~leaELqeLekeveElE~~LEe~~eelE~Lqqe 314 (1857)
...++.+.+.-+-+..+..+++..+..++.+...+...++.++.+.+.|...
T Consensus 24 qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 24 QAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445556677777777777777777777777777777766543
No 127
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.05 E-value=1.6e+02 Score=32.69 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHhhHHhhhchhhhHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy10988 934 CIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLK 991 (1857)
Q Consensus 934 ~~e~~~k~~~~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~~~q~~~~~~~~t~~~~ 991 (1857)
++..+..+.+++.-.--..+.|++||..|+.+|+..+. .|++|.+.++++..+..
T Consensus 4 ~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~---ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 4 LTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKAT---EIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Confidence 34445555556666667788999999999999999999 88888888887776664
Done!