RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10988
(1857 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 107 bits (267), Expect = 3e-23
Identities = 97/637 (15%), Positives = 215/637 (33%), Gaps = 154/637 (24%)
Query: 678 LDGKYEELKEKYEQMSEKFENQTGKD--SVDIDTLIKNLQSKKEELCRLLDEKNT----- 730
+D + E + +Y+ + FE+ + D+ + K++ SK EE+ ++ K+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTL 65
Query: 731 --LDNIKVEKENLEIQL--DNLNTNYQ---DKINTLIQSKNDLEAKISELNNAQHNKNNE 783
+ ++E + + + L NY+ I T + + + E + +N N
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 784 INDLN-KRISLFEE-NNAFLQ----------------RSILDLERNLDEKLKEFNEKEIS 825
N R+ + + A L+ ++ + L+ L K++ + +I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 826 YNENIEASNHKIQQLTQETDTLKAELVAQAEST-QLVKQEQALLAAAPVDDNIVIEN-QQ 883
+ L + S +++ Q LL + ++
Sbjct: 186 W-------------LN----------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 884 LKQNLESVKQENTLVVENLQNLIAQKDYE----INAKVTELSIIMEKCKQYEDKCIELES 939
+K + S++ E L+ L+ K YE + V + C L +
Sbjct: 223 IKLRIHSIQAE-------LRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILLT 271
Query: 940 TLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTH-- 997
T ++TDF + + S L + +++ +K ++ Q L + T+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 998 ------EEDRKILDEYKQR------------VQELDAKLAEEIASKTSI--------IQT 1031
+ D +K + L+ ++ + S+
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 1032 LEI--------QVKELQDKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIH---- 1079
L + V + +KL Y+ VE + + + + ++ +++ E +H
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIV 450
Query: 1080 -EFEVK----TNTLSDLQTQLDTYNAK-IT-HAALVEQELGEMKNQMQTLEYEKQELLKQ 1132
+ + ++ L LD Y I H +E E+ L +
Sbjct: 451 DHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEH-------------PERMTLFRM 495
Query: 1133 IQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQY 1192
+ + FL+ +++ A++ + S+L NTL L+ + DN+ +Y
Sbjct: 496 V---FLDFRFLEQKIRHDSTAWNA----SGSIL---NTL----QQLKFYKPYICDNDPKY 541
Query: 1193 KQMQIVYEDTQRKLNEELARRDAT----IATLNTTGA 1225
+++ D K+ E L T IA + A
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 102 bits (254), Expect = 1e-21
Identities = 95/615 (15%), Positives = 185/615 (30%), Gaps = 139/615 (22%)
Query: 1189 ETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDL------NASIENILKEKDAT 1242
+ + + Q Y+D DA + + D+ I++I+ KDA
Sbjct: 8 DFETGEHQYQYKDILSVF------EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1243 LSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNE 1302
+ K + +Q +E+ L Y+F ++ + + L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 1303 MKQSFFIGDSKDSV-RYSDEEHVQELRE--LQLMNE--------------SLQNEVLRSA 1345
Q F +K +V R + +LR+ L+L + +V S
Sbjct: 122 DNQVF----AKYNVSR---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 1346 TEIDNMKETITYLEQYNLQLSKSQESSTTLTLLQSELAEQRTLNQQLVQIVNTKHTESNN 1405
M I + L L T L +LQ L Q ++ +
Sbjct: 175 KVQCKMDFKIFW-----LNLKNCNSPETVLEMLQK-LLYQ--IDPNWTSRSDHSSNIKLR 226
Query: 1406 YHQEILRLNGILSEE-LPK----LKDLGGQVATLE---------KQLKTTSET------L 1445
H L +L + L + V + K L TT
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 1446 ATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQHVAPVETS--- 1502
A ++ ++L +++ L+ P + P S
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPRE-----VLTTNPRRLSIIA 334
Query: 1503 -RERNELALRLQNLQEEKTMLLTEINDLRLNQ------NTLY------NENERLKQHLLK 1549
R+ LA N + LT I + LN ++ + + LL
Sbjct: 335 ESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 1550 T--EEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSL 1607
+ S+ + LH K E++ K S + S + ++E + +S+
Sbjct: 394 LIWFDVIKSD---VMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 1608 TEQKEKLQEKLYQAEDVVQK------------HQASLTNLQIVLEQFQAEKDNE---IAQ 1652
+ + + ++D++ H L N++ E+ +
Sbjct: 450 VDHYNIPKT--FDSDDLIPPYLDQYFYSHIGHH---LKNIE------HPERMTLFRMVFL 498
Query: 1653 SLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEK 1712
FL+ ++ + N +++TLQ QL+ + + D +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKP------YICDNDP-------KYERL 544
Query: 1713 VNQLMEELNKKEAKL 1727
VN +++ L K E L
Sbjct: 545 VNAILDFLPKIEENL 559
Score = 88.8 bits (219), Expect = 1e-17
Identities = 98/689 (14%), Positives = 198/689 (28%), Gaps = 199/689 (28%)
Query: 233 DVK--EELEKLVVEKQELIEVIQN-HETLIAKLEADLTRVKEEKEAE--VSGKLEQDAMV 287
D K +++ K ++ K+E+ +I + K+E+ + V L +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--Y 91
Query: 288 KELKSKVETLEASLKQKEQELEGWTDNDN--WGSSGNEQDIEALKKENEEIKEKLAKQES 345
K L S ++T +Q + + + + D + K N + K
Sbjct: 92 KFLMSPIKT---EQRQPSMMTRMYIEQRDRLYN------DNQVFAKYNVSRLQPYLKLRQ 142
Query: 346 TLAKLKTHS-----------------ESLQKQLLEKEMELE-EW---GNNDSWGGDNDKL 384
L +L+ + ++ +M+ + W N +S L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVL 199
Query: 385 ATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEG--------------DD-WG 429
LQ+ L ++ T +K + + ++ +
Sbjct: 200 EMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ- 254
Query: 430 TGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLN 489
N+ N C K ++ + ++ + D LS T+ S L
Sbjct: 255 --NAKAWNAFNLSC----KILLTTRFKQ------VTDF---LSAATTTHISLDHHSMTL- 298
Query: 490 TLREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENE 549
T E LL + L L + +P R+ +++
Sbjct: 299 TPDEVKSLLLKYLD---CRPQDLPRE---VLTT-----NPR---------RLSIIAES-- 336
Query: 550 GLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLE 609
+R + DN + +K L +E
Sbjct: 337 -IR-------------------DGLATWDNWKHVNCDK----------------LTTIIE 360
Query: 610 QAVEKQKGLEEEIQQLEEDTSILREQLESKDQV-----DDSIEKTLRNEIQELHAKLINV 664
++ + E +++ + S+ + D I+ + + +LH +
Sbjct: 361 SSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-- 416
Query: 665 EALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTG--KDSVDIDTLIKNLQSKKEELC 722
VEKQ + + Y ++ K EN+ + VD + K S
Sbjct: 417 --------VEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL--- 464
Query: 723 RLLDEKNTLDN---------IKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKI--- 770
LD +K E+ E ++ + D LE KI
Sbjct: 465 ----IPPYLDQYFYSHIGHHLK-NIEHPE-RMTLFRMVFLD--------FRFLEQKIRHD 510
Query: 771 SELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENI 830
S NA + N + L +N+ +R + + L EN+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-----------PKIEENL 559
Query: 831 EASNHK--IQQ-LTQETDTLKAELVAQAE 856
S + ++ L E + + E Q +
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 71.4 bits (174), Expect = 3e-12
Identities = 44/333 (13%), Positives = 102/333 (30%), Gaps = 82/333 (24%)
Query: 1524 TEINDLRL-NQNTLYNENERLKQHL-LKTEEDNTSELVKAEQTIQDLHVKLREAEERV-- 1579
E + + ++ L + + K +D ++ E+ I + + ++A
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHI-IMSKDAVSGTLR 66
Query: 1580 ---------KSSATAYTSASVRSN-----QQVEALTSQVKSLTEQKEKLQEKLYQAEDVV 1625
+ + +R N ++ Q +T + +++LY V
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 1626 QKHQAS----LTNLQIVLEQFQAEKD---------------NEIAQSLEFLQGELNNSY- 1665
K+ S L+ L + + K+ ++ S + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 1666 ------AKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEE 1719
+ +++ L +Q+ S S D + I + ++ +L++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS------DHSSNIKLRIHSIQAELRRLLKS 240
Query: 1720 LNKKEA--KLKEVNNGGKVD----KC--LVT---NMIVNFLTAPSRP-----------SR 1757
+ L V N + C L+T + +FL+A + +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 1758 HQALQILASVIDMTPQDRQKIGLEPSQA--FNP 1788
+ +L +D PQD P + NP
Sbjct: 301 DEVKSLLLKYLDCRPQD------LPREVLTTNP 327
Score = 68.3 bits (166), Expect = 2e-11
Identities = 72/529 (13%), Positives = 175/529 (33%), Gaps = 151/529 (28%)
Query: 38 DNSDEISEAY--DMLQNEYDDLKQKFDEVVNRTKSDNGNQTEVPTT---STVRNGFELMP 92
+E+ + + ++L+ Y L +T+ Q + T +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPI-----KTEQ---RQPSMMTRMYIEQRDRLYNDNQ 124
Query: 93 NVEDYN----EKIRALNEEVSQLKTKEN-ELH--------------SRIEELEDKLQQKI 133
YN + L + + +L+ +N + +++ K+ KI
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 134 --------DDEKSVSYQLEEKAIEI----SQLTEHNRFLQEEMQSLKDKLRD-------- 173
+ ++V L++ +I + ++H+ ++ + S++ +LR
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 174 -----LDENV-TVEDIKKANESA---IAKKD-EVIEKLKAE------LESVEKALREKES 217
L NV + N S + + +V + L A L+ L E
Sbjct: 245 NCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 218 E--VEEWGNNDAWGASDDVKEELEK---LVVEKQELIEVIQNHETLIAKLEAD-LTRVKE 271
+ + ++ + D+ E+ + ++IA+ D L
Sbjct: 304 KSLLLKYLDCRP----QDLPREVLTTNPRRL-------------SIIAESIRDGLATWDN 346
Query: 272 EKEAEVSGKLEQDAMVKELKSKVETLE-ASLKQKEQELEGWTDNDN---------WGSSG 321
K + D + ++S + LE A ++ L + + + W
Sbjct: 347 WK------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV- 399
Query: 322 NEQDIEALKKENEEIKEKLAKQ---ESTLA------KLKTHSE---SLQKQLLEKEMELE 369
+ D+ + N+ K L ++ EST++ +LK E +L + +++ +
Sbjct: 400 IKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 370 EWGNNDSWGGDNDK---------LATLQQENKVLNEKVSELQTQLLS---VEEALKKKEN 417
+ ++D D+ L ++ E+++ + L +E+ ++
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-----ERMTLFRMVFLDFRFLEQKIRH--- 509
Query: 418 DLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALID 466
+ W S + N + ++ I + + E L A++D
Sbjct: 510 ------DSTAWNASGS--ILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 57.6 bits (138), Expect = 5e-08
Identities = 68/455 (14%), Positives = 135/455 (29%), Gaps = 124/455 (27%)
Query: 12 TPSADNAMQTDPELPLPLEPCQTTGSDNSDEISEAYDMLQNE---------Y-------D 55
+P M L ++P T+ SD+S I +Q E Y
Sbjct: 194 SPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 56 DLK-----QKFDE-----VVNRTKSD----NGNQTEVPTTSTVRNGFELMPNVEDYNEKI 101
+++ F+ + R K + T + D + +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSL 306
Query: 102 --RALNEEVSQLK---TKENELH-SRI-EELEDKLQQKIDDEKSVSYQLEEKAIEIS--Q 152
+ L+ L N S I E + D L D+ K V+ IE S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNV 365
Query: 153 LTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKL-----KAELES 207
L E + + D+L + I ++ + K+++
Sbjct: 366 LEP------AEYRKMFDRLSVFPPSA---HIPT----------ILLSLIWFDVIKSDVMV 406
Query: 208 VEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEA--- 264
V L + S VE+ + EL+ + + L H +++
Sbjct: 407 VVNKLHKY-SLVEKQPKESTISI-PSIYLELKVKLENEYAL------HRSIVDHYNIPKT 458
Query: 265 ----DLTRVKEE-----------KEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELE 309
DL + K E E+ + + + LE ++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHP---ERMTLFRMVFLDFRFLEQKIRH------ 509
Query: 310 GWTDNDNWGSSGNEQD-IEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLE-KEME 367
D+ W +SG+ + ++ LK I + K E + + +++ L+ K +
Sbjct: 510 ---DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 368 LEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQ 402
L +A + ++ + E ++Q
Sbjct: 567 LLR-------------IALMAEDEAIFEEAHKQVQ 588
Score = 54.1 bits (129), Expect = 4e-07
Identities = 72/469 (15%), Positives = 154/469 (32%), Gaps = 102/469 (21%)
Query: 1296 MIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETI 1355
M E E + + KD + ++ V + + + + ++ +L EID++
Sbjct: 7 MDFETGEHQYQY-----KDILSVFEDAFVDNF-DCKDVQDMPKS-ILSKE-EIDHI---- 54
Query: 1356 TYLEQYNLQLSKSQESSTTLTLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLN- 1414
+ S TL L + L++Q + Q+ V+ E+LR+N
Sbjct: 55 ---------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE--------------EVLRINY 91
Query: 1415 GILSEELPKLKDLGGQVATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMS 1474
L +K Q + + + + L + K +S +L+ +L
Sbjct: 92 KFLMS---PIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVS----RLQPYLKLRQ 142
Query: 1475 S--NDRPEA----DG-----------EPAQEREVVAQHVAPV-----ETSRERNELALRL 1512
+ RP DG + +V + + + + L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 1513 QNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSEL----VKAEQTIQ-- 1566
Q L + T +D N + + + LLK++ L V+ +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 1567 DLHVKL----REAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKL-YQA 1621
+L K+ R + V +A T+ + + LT E K L + L +
Sbjct: 263 NLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRP 315
Query: 1622 EDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQ 1681
+D+ + TN + L + +A + + + ++LT +I + +
Sbjct: 316 QDL--PREVLTTNPR-RLSIIAESIRDGLAT-WDNWK------HVNCDKLTTIIESSLNV 365
Query: 1682 LQ--EARESLSAAGRLSDQLNQKSQTIQEL-----TEKVNQLMEELNKK 1723
L+ E R+ + + + + V ++ +L+K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 88.4 bits (219), Expect = 2e-17
Identities = 65/369 (17%), Positives = 154/369 (41%), Gaps = 41/369 (11%)
Query: 99 EKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNR 158
E+++A +EE+ + K ++ + + ++ELE K Q +++ + +L+ + ++ E
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916
Query: 159 FLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESE 218
L + Q L++ L +++ +E+ ++ ++ A+K +K++ ++ +E+ L E+E+
Sbjct: 917 RLAAKKQELEEILHEMEAR--IEEEEERSQQLQAEK----KKMQQQMLDLEEQLEEEEAA 970
Query: 219 VEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVS 278
++ ++ E + +++ + I E KL + ++E +
Sbjct: 971 RQK------------LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018
Query: 279 GKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKE 338
E++ K L E+ + + E L+ E+ + L+K +++
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLK-----------KEEKSRQELEKIKRKLEG 1067
Query: 339 KLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKV 398
+ + +A+L+ L+ QL +KE EL+ + + ++ + L +
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAA--LARLEDETSQKNNALKKIRELESHI 1125
Query: 399 SELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEE 458
S+LQ L S + A K E D E EL L+ + + T +
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSE----------ELEALKTELEDTLDTTATQQELRG 1175
Query: 459 LLKQALIDK 467
+ DK
Sbjct: 1176 SDYKDDDDK 1184
Score = 87.6 bits (217), Expect = 3e-17
Identities = 55/311 (17%), Positives = 131/311 (42%), Gaps = 37/311 (11%)
Query: 93 NVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQ 152
+ E L + +L+ +E+ +RIEE E++ QQ ++K + Q+ + ++ +
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Query: 153 LTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKAL 212
+ LQ E + K++ +++++ E K + + L+ + + L
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDI------LIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 213 REKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEE 272
E+E + + +K + E ++ E + ++ + K +L ++K +
Sbjct: 1021 AEEEEKAKNL---------TKLKNKHESMISELEVRLKKEE-------KSRQELEKIKRK 1064
Query: 273 KEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWT---DNDNWGSSGNEQDIEAL 329
E E S + + EL++++ L+A L +KE+EL+ +++ + + I L
Sbjct: 1065 LEGESS---DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Query: 330 KKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQ 389
+ +++E L +++ K + L ++L + ELE+ D AT Q+
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED---------TLDTTATQQE 1172
Query: 390 ENKVLNEKVSE 400
+ +
Sbjct: 1173 LRGSDYKDDDD 1183
Score = 84.9 bits (210), Expect = 2e-16
Identities = 60/360 (16%), Positives = 147/360 (40%), Gaps = 30/360 (8%)
Query: 810 RNLDEKLKEFNEKEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLA 869
+E+++ +E+ E + + ++++L Q+ L E E ++ E L A
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE---KLQAETELYA 909
Query: 870 AAPVDDNIVIENQQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQ 929
A ++++ L + KQE ++ ++ I +++ E + ++
Sbjct: 910 EA----------EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Query: 930 YEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTET 989
E++ E E+ + T + K ++ M + K + E + LT
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Query: 990 LKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHV 1049
L + + K+ ++++ + EL+ +L +E S+ Q LE ++L+ +
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR----QELEKIKRKLEGESSDLHEQ 1075
Query: 1050 ENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVE 1109
EL ++++ EL+ A+ E E + E +T+ ++ ++ + I + ++
Sbjct: 1076 IAEL---QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI---SDLQ 1129
Query: 1110 QELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKN 1169
++L K E +K++L ++++ LK EL+ D + + S + +
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEA-------LKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 84.5 bits (209), Expect = 2e-16
Identities = 69/345 (20%), Positives = 143/345 (41%), Gaps = 39/345 (11%)
Query: 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIE 647
R +EE+ +E K++ ++A + K LE++ QL E+ ++L+E+L++ + ++ E
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 648 KT---------LRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698
L + E+ A++ E Q Q EK+ + + +L+E+ E+ E
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE----EA 969
Query: 699 QTGKDSVDIDTLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQ---DK 755
K ++ T ++ ++++ + D+ N L E++ LE ++ +L TN +K
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK---ERKLLEERVSDLTTNLAEEEEK 1026
Query: 756 INTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLE------ 809
L + KN E+ ISEL + +L K E ++ L I +L+
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 810 ----RNLDEKLKEFNEKEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQ 865
+E+L+ + + KI++L L+ +L ++ + ++++
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
Query: 866 ALLAAAPVDDNIVIENQQLKQNLESVKQENTLVVENLQNLIAQKD 910
L+ E + LK LE E + D
Sbjct: 1147 RDLSE---------ELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 79.5 bits (196), Expect = 9e-15
Identities = 61/362 (16%), Positives = 134/362 (37%), Gaps = 47/362 (12%)
Query: 924 MEKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEEL 983
E+ + +++ + + EQ + E + + E +QAE + E
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 984 QALTETLKQTSNTHEEDRKILDEYKQRVQELDAK----------LAEEIASKTSIIQTLE 1033
L ++ E ++E ++R Q+L A+ L E++ + + Q L+
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 1034 IQVKELQDKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQW---IHEFEVKTNTLSD 1090
++ K++ E+++ + +L + + LE + + E E K L+
Sbjct: 976 LEKVTADGKIKKM---EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 1091 LQTQLDTYNAKI-THAALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQS 1149
L+ + ++ +++ E+ E++ + LE E +L +QI E LK +L
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 1150 LQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEE 1209
++ + +KN ++ LE+ + +L ++ K + E +R L+EE
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Query: 1210 LARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLS 1269
L L L+ + T QE++ + K
Sbjct: 1153 LEA------------------------------LKTELEDTLDTTATQQELRGSDYKDDD 1182
Query: 1270 EK 1271
+K
Sbjct: 1183 DK 1184
Score = 79.5 bits (196), Expect = 1e-14
Identities = 59/362 (16%), Positives = 140/362 (38%), Gaps = 40/362 (11%)
Query: 121 RIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTV 180
++ E+++Q K ++ + + ++ E+ +L + + L EE L++KL+
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ-------- 902
Query: 181 EDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEK 240
+ + + + K ELE + + + E EE S ++ E +K
Sbjct: 903 --AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE--------RSQQLQAEKKK 952
Query: 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEAS 300
+ + +L E ++ E KL+ + + + L + +L + + LE
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 301 LKQKEQELEGWTDNDNWGSSGN---EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESL 357
+ L + + E I L+ ++ ++ + E KL+ S L
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072
Query: 358 QKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKEN 417
+Q+ E + ++ E +LA ++E + ++ + +Q + + +++ E+
Sbjct: 1073 HEQIAELQAQIAEL---------KAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123
Query: 418 DLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQT 477
+ D E +L + +A ++ EK +L + E LK L D + + +
Sbjct: 1124 HISDLQE----------DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Query: 478 NE 479
Sbjct: 1174 RG 1175
Score = 78.7 bits (194), Expect = 1e-14
Identities = 71/405 (17%), Positives = 154/405 (38%), Gaps = 83/405 (20%)
Query: 284 DAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQ 343
D ++ K + + EA LK+ EQ+ ++ L+++ + E A+
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQL-----------CEEKNLLQEKLQAETELYAEA 911
Query: 344 ESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQT 403
E +L + L++ L E E +EE + ++ LQ E K + +++ +L+
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEE---------EEERSQQLQAEKKKMQQQMLDLEE 962
Query: 404 QLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQA 463
QL E A +K + + ++ + E +L + +LL++
Sbjct: 963 QLEEEEAARQKLQLEKVTA----------DGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 464 LIDKENELSEWGQTNEWGSPSSSDLNTLREESGLLRQKLSEQKVIISKLKTQLEAAQQGT 523
+ D L+E E++ L + ++ + +IS+L+ +L+ ++
Sbjct: 1013 VSDLTTNLAE-----------------EEEKAKNLTKLKNKHESMISELEVRLKKEEK-- 1053
Query: 524 SSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQL 583
Q+ E L E+ L ++ +L
Sbjct: 1054 ---------SRQELEKIKRKLEGESSDLHEQIAEL------------------------- 1079
Query: 584 TAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVD 643
A+ L ++ +E +LE ++ ++I++LE S L+E LES+
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR 1139
Query: 644 DSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEK 688
+ EK R+ +EL A +E ++ +++ Y++ +K
Sbjct: 1140 NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 76.0 bits (187), Expect = 1e-13
Identities = 65/360 (18%), Positives = 139/360 (38%), Gaps = 60/360 (16%)
Query: 1109 EQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEK 1168
++EL K + Q E E +EL ++ + N L+ +LQ+ + ++ + L +K
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 1169 NTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDL 1228
L E +EA+++E + Q + + + L E+L +A L
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL-------- 974
Query: 1229 NASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEY 1288
+ + T +KK E +++ L K E++ LE R DL
Sbjct: 975 --------QLEKVTADGKIKKMEDDILIMEDQNNKLTK--------ERKLLEERVSDLTT 1018
Query: 1289 KLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEI 1348
L E+E+ + L ++K + ++ + +EL+ + L+ E +I
Sbjct: 1019 NLAEEEEKAKNLTKLKNKH--ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076
Query: 1349 DNMKETITYLEQYNLQLSKSQESSTTLTLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQ 1408
++ I L+ QL+K +E L + L ++ + ++
Sbjct: 1077 AELQAQIAELKA---QLAKKEE---ELQAALARLEDETSQKNNALK-------------- 1116
Query: 1409 EILRLNGILSEELPKLKDLGGQVATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEE 1468
K+++L ++ L++ L++ E+Q + E+L +++LE+
Sbjct: 1117 --------------KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162
Score = 75.3 bits (185), Expect = 1e-13
Identities = 43/332 (12%), Positives = 122/332 (36%), Gaps = 33/332 (9%)
Query: 499 RQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQL 558
Q+ E++ +LE + + +++Q L + ++L
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 559 GLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGL 618
E + + + + QL AEK+++ +++ ++L+++LE+ ++ L
Sbjct: 926 ----EEILHEMEARIEEEEERSQQLQAEKKKMQQQM-------LDLEEQLEEEEAARQKL 974
Query: 619 EEEIQQLEEDTSILREQLESKDQVDDSIEK---TLRNEIQELHAKLINVEALVNQAQVEK 675
+ E + + + + + ++ + K L + +L L E K
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034
Query: 676 QALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDE-KNTLDNI 734
+ EL+ + ++ + + +++ + + L+ + +L + E + + +
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQ--------ELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 735 KVEKENLEIQLDNLNT---NYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRI 791
K + E +L + + N ++ +LE+ IS+L ++
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL-------QEDLESEKAAR 1139
Query: 792 SLFEENNAFLQRSILDLERNLDEKLKEFNEKE 823
+ E+ L + L+ L++ L ++
Sbjct: 1140 NKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171
Score = 74.1 bits (182), Expect = 4e-13
Identities = 62/338 (18%), Positives = 146/338 (43%), Gaps = 28/338 (8%)
Query: 532 QQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLD 591
Q+ ++R+ + E +E E T++ + +++ E++ + + +L A+K+ L+
Sbjct: 867 QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926
Query: 592 EEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLR 651
E + + E +++ +Q ++K +++++ LEE E+ E+ Q + T
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ----LEEEEAARQKLQLEKVTAD 982
Query: 652 NEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLI 711
+I+++ ++ +E N+ E+ + L+E+ ++ + K
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKER-------KLLEERVSDLTTNLAEEEEK--------A 1027
Query: 712 KNLQSKKEELCRLLDE-KNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKI 770
KNL K + ++ E + L + ++ LE L + + + L + +L+A+I
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL----EGESSDLHEQIAELQAQI 1083
Query: 771 SELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENI 830
+EL K E+ R+ + I +LE ++ + L+E E E +
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD-LQEDLESEKAARNKA 1142
Query: 831 EASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALL 868
E + L++E + LK EL ++T ++ +
Sbjct: 1143 EKQK---RDLSEELEALKTELEDTLDTTATQQELRGSD 1177
Score = 69.9 bits (171), Expect = 8e-12
Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 16/295 (5%)
Query: 1443 ETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQHVAPVETS 1502
E + K+ +L TKE+ A+++L+E+ Q + + + + E E
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA----EAE 912
Query: 1503 RERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAE 1562
R LA + Q L+E + I + L E ++++Q +L EE L + E
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ----LEEEE 968
Query: 1563 QTIQDLHVKLREAEERVKS---SATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLY 1619
Q L ++ A+ ++K + + ++ + L +V LT + +EK
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 1620 QAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQ 1679
+ KH++ ++ L++ L++ + + E+ + L+GE ++ + + EL I+ L+
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQ-ELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 1680 HQLQEARESLSAA-GRLSDQLNQKSQ---TIQELTEKVNQLMEELNKKEAKLKEV 1730
QL + E L AA RL D+ +QK+ I+EL ++ L E+L ++A +
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
Score = 66.4 bits (162), Expect = 9e-11
Identities = 45/251 (17%), Positives = 92/251 (36%), Gaps = 18/251 (7%)
Query: 1499 VETSRERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHL---LKTEEDNT 1555
E LQ +E + E+ +L L E L++ L + +
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 1556 SELVKAEQTIQDLHVKLREAEERVKS---SATAYTSASVRSNQQVEALTSQVKSLTEQKE 1612
V+ Q+L L E E R++ + + + QQ+ L Q++ ++
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972
Query: 1613 KLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELT 1672
KLQ + A+ ++K + + ++ + E+ + + + L L K LT
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK-LLEERVSDLTTNLAEEEEKAKNLT 1031
Query: 1673 QLISTLQHQLQEARESLSAAGRLSDQLNQKSQ-----------TIQELTEKVNQLMEELN 1721
+L + + + E L + +L + + I EL ++ +L +L
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 1722 KKEAKLKEVNN 1732
KKE +L+
Sbjct: 1092 KKEEELQAALA 1102
Score = 65.6 bits (160), Expect = 1e-10
Identities = 54/346 (15%), Positives = 140/346 (40%), Gaps = 23/346 (6%)
Query: 440 RAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNTLREESGLLR 499
K + E+ + + + K+ E EL E Q + + L + L
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 500 QKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLG 559
+ E +V ++ K +LE + ++++ E R + L E + ++ ++ L
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEA-------RIEEEEERSQQLQAEKKKMQQQMLDL- 960
Query: 560 LVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIEL---KKKLEQAVEK-Q 615
E +E + +++++++ ++ +N +L +K LE+ V
Sbjct: 961 ---EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017
Query: 616 KGLEEEIQQLEEDTSILREQLESKDQVDDSIEKT------LRNEIQELHAKLINVEALVN 669
L EE ++ + T + + +++ ++K L ++L + ++ +
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077
Query: 670 QAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLD-EK 728
+ Q + L + + +E+ + + E++T + + + I+ L+S +L L+ EK
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKN-NALKKIRELESHISDLQEDLESEK 1136
Query: 729 NTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELN 774
+ + +K +L +L+ L T +D ++T + + + +
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 65.2 bits (159), Expect = 2e-10
Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 1245 EMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNEMK 1304
E ++K L + + E L + + + L + ++LE L E E I+E E
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 1305 QSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQYNLQ 1364
Q K ++ + ++L E + + LQ E + + +I M++ I +E N +
Sbjct: 944 QQLQ--AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 1365 LSKSQESSTTLTLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKL 1424
L+K ++ L+ +++ T + + N + I L L +E
Sbjct: 1002 LTKERKL------LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 1425 KDLGGQVATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGE 1484
++L LE + E +A + Q+AE K QL + EE+ ++ + +
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL---AKKEEELQAALARLEDETSQKN 1112
Query: 1485 PAQEREVVAQHVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLK 1544
A ++ EL + +LQE+ N + L E E LK
Sbjct: 1113 NAL---------------KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
Query: 1545 QHLLKTEEDNTSELVKAEQTIQDLHVKLREAEE 1577
L + + T Q+L + ++
Sbjct: 1158 TEL--------EDTLDTTATQQELRGSDYKDDD 1182
Score = 64.1 bits (156), Expect = 5e-10
Identities = 54/326 (16%), Positives = 124/326 (38%), Gaps = 27/326 (8%)
Query: 752 YQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLER- 810
+ K L + KN L+ K+ L + EE ++ I + E
Sbjct: 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942
Query: 811 --NLDEKLKEFNEKEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALL 868
L + K+ ++ + E +E Q+L E T ++ + +++ + L
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Query: 869 AAAPVDDNIVIENQQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCK 928
E + L++ + + E +NL K+ + + ++EL + ++K +
Sbjct: 1003 TK---------ERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-KHESMISELEVRLKKEE 1052
Query: 929 QYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTE 988
+ + +++ L+ + +D + + ++AEL A L + EELQA
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL----------AKKEEELQAALA 1102
Query: 989 TLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTH 1048
L+ ++ K + E + + +L L E A++ E Q ++L ++L +
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK----AEKQKRDLSEELEALKT 1158
Query: 1049 VENELGQYRSKVYELEQIQARLEAER 1074
+ + EL + + ++
Sbjct: 1159 ELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 62.9 bits (153), Expect = 1e-09
Identities = 58/380 (15%), Positives = 142/380 (37%), Gaps = 50/380 (13%)
Query: 1317 RYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQYNLQLSKSQESSTTLT 1376
+ + ++ + ++ E+ R+ + + LEQ + QL +E +
Sbjct: 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLC--EEKNLLQE 899
Query: 1377 LLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRL------NGILSEELPKLKDLGGQ 1430
LQ+E + V++ K H+ R+ + L E K++ Q
Sbjct: 900 KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ---Q 956
Query: 1431 VATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQERE 1490
+ LE+QL+ + + ++ + + + N++ + + +ER
Sbjct: 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED---QNNKLTKERKLLEERV 1013
Query: 1491 VVAQHVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKT 1550
E E A L L+ + +++E+ + E E++K+ L
Sbjct: 1014 SDLT-----TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 1551 EEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQ 1610
D ++ + + I +L +L + EE +++A ++++ T Q
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEE------------------ELQAALARLEDETSQ 1110
Query: 1611 KEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKD------NEIAQSLEFLQGELNNS 1664
K +K+ ++ ++ +++LQ LE +A ++ ++++ LE L+ EL ++
Sbjct: 1111 KNNALKKI-------RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163
Query: 1665 YAKNNELTQLISTLQHQLQE 1684
+L + +
Sbjct: 1164 LDTTATQQELRGSDYKDDDD 1183
Score = 51.4 bits (123), Expect = 3e-06
Identities = 46/258 (17%), Positives = 99/258 (38%), Gaps = 35/258 (13%)
Query: 41 DEISEAYDMLQNEYDDLKQKFDEVVN-RTKSDNGNQTEVPTTSTVRNGFELMPNVEDYNE 99
++ +Q + DL+++ +E R K T ++ + + +ED N
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA---DGKIKKMEDDILIMEDQNN 1000
Query: 100 K----IRALNEEVSQLKTKENELHSRIEELE---DKLQQKIDDEKSVSYQLEEKAIEI-- 150
K + L E VS L T E + + L +K + I + + + E+ E+
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 151 --SQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESV 208
+L + L E++ L+ ++ +L + KK E A +E ++ +
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLA----KKEEELQAALAR--LEDETSQKNNA 1114
Query: 209 EKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTR 268
K +RE ES + + ++E+LE + + + ++ + L+ +L
Sbjct: 1115 LKKIRELESHISD------------LQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162
Query: 269 VKEEKEA--EVSGKLEQD 284
+ E+ G +D
Sbjct: 1163 TLDTTATQQELRGSDYKD 1180
Score = 39.8 bits (93), Expect = 0.009
Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 89 ELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAI 148
EL + + ++ EE+ + + S+ K+++ + LE +
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137
Query: 149 EISQLTEHNRFLQEEMQSLKDKLRD-LDENVTVEDIKKANESAIAKK 194
++ + R L EE+++LK +L D LD T ++++ ++ K
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.2 bits (187), Expect = 1e-13
Identities = 89/507 (17%), Positives = 153/507 (30%), Gaps = 184/507 (36%)
Query: 1464 SQLEE--VTQLMSSNDRPEADGEPAQEREVVAQHVAPVETSRERNELALRLQNLQEEKTM 1521
SQL+E L + AD EP E+V + + V + E +++ Q L +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN----L 86
Query: 1522 LLTEINDLRLNQNTLYNENERLKQHLL--KTEEDNTSELVKAEQTIQDLHVKLREAEERV 1579
LTE + L N + H L K ++N + LVK ++ I+
Sbjct: 87 CLTEFENCYLEGNDI---------HALAAKLLQENDTTLVKTKELIK------------- 124
Query: 1580 KSSATAYTSASVRSNQQVE-----ALTSQVKS-------------LTEQ--KEKLQEKLY 1619
Y +A + + + + AL V T+ +E L++ LY
Sbjct: 125 -----NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRD-LY 177
Query: 1620 Q-----AEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQS-----LEFLQGEL---NNSYA 1666
Q D+++ +L+ L + D E + LE+L+ + Y
Sbjct: 178 QTYHVLVGDLIKFSAETLSELI------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 1667 KN-------NELTQLIS--TLQHQL----QEARESLSAA-GRLSD----QLNQKSQTIQE 1708
+ + QL L E R L A G ++ + +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 1709 LTEKVNQLMEEL--------------NKKEAKLKEVNNGGKVDKCLVTNMIVNFLTAPSR 1754
V + + L + + L++ + PS
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--------------GVPS- 336
Query: 1755 P-------SRHQALQILASVIDMT----PQDRQ-KIGLEPSQAFN---------PNQSLS 1793
P ++ Q + ++ T P +Q +I L N P QSL
Sbjct: 337 PMLSISNLTQEQ----VQDYVNKTNSHLPAGKQVEISL-----VNGAKNLVVSGPPQSL- 386
Query: 1794 EAFIQFLESESSPRSKAQSSTPVSRRTSSTT-----------SPLL-------------- 1828
L +P QS P S R + S LL
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 1829 ---FPESALPSLPQFSTMGSGSMLKDV 1852
F + +P + T GS L+ +
Sbjct: 447 NVSFNAKDI-QIPVYDT-FDGSDLRVL 471
Score = 65.8 bits (160), Expect = 1e-10
Identities = 91/600 (15%), Positives = 181/600 (30%), Gaps = 191/600 (31%)
Query: 824 ISYNENIEASNHK---IQQLTQETDTLKA--ELVAQAESTQLVKQEQALLAAAPVDDNIV 878
+ AS + + L + T+ A E AE LV + +++ +
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE---LVGKFLGYVSS-------L 71
Query: 879 IENQQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIELE 938
+E ++ Q + + L + +N + + +I+A +L + + K + ++
Sbjct: 72 VEPSKVGQFDQVLN----LCLTEFENCYLEGN-DIHALAAKLLQENDT-TLVKTKEL-IK 124
Query: 939 STLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIK-----QMN-----EELQALTE 988
+ + A++ K +K SA+ +V N + Q N EEL
Sbjct: 125 NYITARIM---AKRPFDK---KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL----- 173
Query: 989 TLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTH 1048
R + Y V +L I + L ++ D + +T
Sbjct: 174 ------------RDLYQTYHVLVGDL-------IKFSAETLSEL---IRTTLDAEKVFTQ 211
Query: 1049 VENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNT-----------LSDLQTQLDT 1097
+ +W+ + L + QL
Sbjct: 212 -----------GLNIL-----------EWLENPSNTPDKDYLLSIPISCPLIGV-IQLAH 248
Query: 1098 YNAKITHAALVEQELGEMKNQMQTLEYEKQELL--KQIQEESIASNFLKNELQSL----- 1150
Y + A L+ GE+++ ++ Q L+ I E +F + +++
Sbjct: 249 Y---VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 1151 -----QDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQ---------YKQMQ 1196
+A+ T L L +NE Q Q
Sbjct: 306 IGVRCYEAYPN-----------------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 1197 IVYEDTQRKLNEEL-ARRDATIATLNT------TGAP-DLNASIENILKEKDATLSEMLK 1248
+ +D K N L A + I+ +N +G P L L+ L+
Sbjct: 349 V--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG------------LNLTLR 394
Query: 1249 KSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDL--------EYKLQE-KEKMIQE 1299
K++A Q + F + L+ L L + + ++
Sbjct: 395 KAKAPSGLDQ-----------SRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKD 442
Query: 1300 LNEMKQSFFIGDSKDSVRYS--DEEHVQELRELQLMNESLQNEVLRSA---TEIDNMKET 1354
L + SF D + V Y D ++ L ++E + + ++R K T
Sbjct: 443 LVKNNVSFNAKDIQIPV-YDTFDGSDLRVLSG--SISERIVDCIIRLPVKWETTTQFKAT 499
Score = 58.5 bits (141), Expect = 2e-08
Identities = 104/598 (17%), Positives = 178/598 (29%), Gaps = 178/598 (29%)
Query: 140 SYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIE 199
L ++E L F Q L+++ + T A DE
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIAS-Q-LQEQFNKILPEPT---------EGFAADDE--- 53
Query: 200 KLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELI----EVIQNH 255
E V K L S VE G D V L + E + ++ H
Sbjct: 54 -PTTPAELVGKFLGYVSSLVEP----SKVGQFDQV---LNLCLTEFENCYLEGNDI---H 102
Query: 256 ETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDND 315
L AKL + + + + + M K K ++L + +
Sbjct: 103 -ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS--NSAL------FRAVGEGN 153
Query: 316 N-----WGSSGNEQD-IEALKK----ENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKE 365
+G GN D E L+ + + + + TL++L + +K + +
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK-VFTQG 212
Query: 366 MELEEWGNNDSWGGDNDKLATLQQENKVLNEKVS----ELQTQLLSVEEALKKKE---ND 418
+ + EW N S D D L ++ +S + QL K +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIP---------ISCPLIGV-IQLAHYVVTAKLLGFTPGE 262
Query: 419 LEDWGEGDDWGTGNSTELNNLRAKC-------SEFEKTIVE---------LKSQEELLKQ 462
L + +G TG+S L + A F ++ + ++ E
Sbjct: 263 LRSYLKG---ATGHSQGL--VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 463 ALIDKENELSEWGQTNEWGSPSS----SDLN--TLREESGLLRQKLSEQKVI-IS----- 510
+L E S + NE G PS S+L +++ L K + IS
Sbjct: 318 SLPPSILEDSL--ENNE-GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 511 -------------KLKTQLE--AAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRV 555
L L A G DQ SRI R+
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGL-------DQ------SRIPFSERK-------- 413
Query: 556 EQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKK-LEQAVEK 614
L N ++ + P ++ L L + ++++ L + N+ K ++ V
Sbjct: 414 ----LKFSNRFLPVASPFHSHL-----LVPASDLINKD---LVKNNVSFNAKDIQIPV-- 459
Query: 615 QKGLEEEIQQLEEDT---SILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVN 669
DT S LR + SI + + + I L + E
Sbjct: 460 ------------YDTFDGSDLRV-------LSGSISERIVDCIIRLP---VKWETTTQ 495
Score = 57.0 bits (137), Expect = 7e-08
Identities = 52/380 (13%), Positives = 110/380 (28%), Gaps = 130/380 (34%)
Query: 1535 TLYNENERLKQHLLKTEEDNTSELVKAEQ--TIQDLHVKL-----REAEERVKSSATAYT 1587
+ +L++ K + T ++ T +L K E
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 1588 SASVR-------SNQQVEALTSQVKSLTEQKEKLQEKL----YQAEDVVQK-----HQAS 1631
+ + + AL +++ + ++L A + ++ ++
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 1632 LTNLQIVLEQFQAEKDNE---IAQSLEFL-QGELNNSYAKNNELTQLISTLQHQLQEARE 1687
L F+A + +A F QG + Y +E R+
Sbjct: 145 L---------FRAVGEGNAQLVAI---FGGQGN-TDDY----------------FEELRD 175
Query: 1688 SLSAAGRLSDQLNQKSQT-IQELTEKVNQLMEELNKKEAKLKEVNNGGKVDKCLVTNMIV 1746
L Q + +L + + + EL + ++V G ++ I+
Sbjct: 176 -----------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LN-------IL 216
Query: 1747 NFLTAPS-RPSRHQALQILASV------IDMTPQ------DRQKIGLEPSQAFNPNQSLS 1793
+L PS P + L S+ I + Q + +G P + + + +
Sbjct: 217 EWLENPSNTPDK----DYLLSIPISCPLIGVI-QLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 1794 E--------AFIQFLESESSPRSKAQSSTPVS-RRTSSTTSPLLF----------PESAL 1834
I A++ + S + +LF P ++L
Sbjct: 272 GHSQGLVTAVAI------------AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 1835 -PSLPQFS-TMGSGS---ML 1849
PS+ + S G ML
Sbjct: 320 PPSILEDSLENNEGVPSPML 339
Score = 47.4 bits (112), Expect = 5e-05
Identities = 67/387 (17%), Positives = 118/387 (30%), Gaps = 141/387 (36%)
Query: 1110 QELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKN 1169
QE G M M Y+ + + + A N K+ FS++ ++ N
Sbjct: 1627 QEQG-MG--MD--LYKTSKAAQDVWNR--ADNHFKDTY-----GFSILD------IVINN 1668
Query: 1170 TLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLN 1229
+ T + K + +N Y +++E D
Sbjct: 1669 PVNLTIHFGGEKGKRIREN---Y--SAMIFETI-----------------------VDGK 1700
Query: 1230 ASIENILKEKDATLSEMLKKSEAK--DKTLQEMQAALEKHLSEKYQFEKEALELRTEDLE 1287
E I KE + + +SE T Q Q AL L EK FE DL+
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPAL--TLMEKAAFE---------DLK 1748
Query: 1288 YKLQEKEKMIQELNEMKQSFFIGDS----------------KDSVRYSDEEHVQELRELQ 1331
+ +I + F G S + V V R +
Sbjct: 1749 -----SKGLIPA-----DATFAGHSLGEYAALASLADVMSIESLVE------VVFYRGMT 1792
Query: 1332 LMNESLQNEVLRS-----ATEIDNMKETITYLEQYNLQLSKSQESSTTLTLLQSELAEQR 1386
+ ++E+ RS A + + SQE+ L + + ++
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASF------------SQEA---LQYVVERVGKR- 1836
Query: 1387 TLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLKTTSETLA 1446
LV+IVN N +Q+ + + G + L+ + +
Sbjct: 1837 --TGWLVEIVN-----YNVENQQY-----VAA----------GDLRALDT-VTNVLNFIK 1873
Query: 1447 TKERQLAETKEQLSLAQSQLEEVTQLM 1473
++ + E ++ LS LEEV +
Sbjct: 1874 LQKIDIIELQKSLS-----LEEVEGHL 1895
Score = 47.0 bits (111), Expect = 7e-05
Identities = 78/575 (13%), Positives = 173/575 (30%), Gaps = 178/575 (30%)
Query: 1208 EELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKK------SEAKDKTLQEMQ 1261
+L ++ L + ++ T +E++ K S + + +
Sbjct: 31 SQL--QEQFNKILPE-------PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 1262 AALEKHLSEKYQFEKEALELRTEDL-----------EYKLQEKEKMIQ-----------E 1299
L L+E FE L D+ + L + +++I+
Sbjct: 82 QVLNLCLTE---FENCYL--EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 1300 LNEMKQS-FFIGDSKDSVR-Y-------SDEEHVQELRELQLMNESLQNEVLRSATEI-- 1348
++ S F + + + + +++ +ELR+L L ++++ + E
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 1349 ----DNMKETITYLEQYNLQ--LSKSQESSTTLTLLQSELAEQRTLNQ-QLVQIVNTKHT 1401
+ + + N+ L + LL ++ ++Q+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS----CPLIGVIQLA----- 247
Query: 1402 ESNNYHQEILRLNGILSEEL-PKLKDLGGQVATLEKQLKTTSETLATKERQLAETKEQ-L 1459
+Y +L G EL LK G L T+ +A ++ E
Sbjct: 248 ---HY-VVTAKLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAE-----TDSWESFF 293
Query: 1460 SLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQHVAP--------VETSRERNE---- 1507
+ + + + G V P +E S E NE
Sbjct: 294 VSVRKAITVLFFI----------G-------VRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 1508 --LALRLQNL-QEEKTMLLTEINDLRLNQN-----TLYN--EN----------ERLKQHL 1547
L++ NL QE+ + + N L +L N +N L L
Sbjct: 337 PMLSIS--NLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 1548 LKTEEDNTSELVKAEQTIQDLHVKLREAEERVKS-----SA---TAY-TSASVRSNQQVE 1598
K KA + + E + + + ++ + AS N+ +
Sbjct: 394 RK---------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 1599 ALTSQVKSLTEQKEKLQEKLYQAED--VVQKHQASLT-NL--QIVLEQFQAEKDNEIAQS 1653
+++ + +Q +Y D ++ S++ + I+ + E + +
Sbjct: 445 K-----NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 1654 --LEFLQGELNNSYAKNNELTQLISTLQHQLQEAR 1686
L+F G + + L H+ ++
Sbjct: 500 HILDFGPGGASG-----------LGVLTHRNKDGT 523
Score = 47.0 bits (111), Expect = 8e-05
Identities = 43/269 (15%), Positives = 77/269 (28%), Gaps = 107/269 (39%)
Query: 955 NKNKMAELSAMLESVQAENISIKQMNEELQALT-----ETLKQTSNTHEEDRKILDEYKQ 1009
N + M + + ++ E I K++NE + T L T T Q
Sbjct: 1687 NYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFT------------Q 1733
Query: 1010 RVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYT--HVENELGQY-----RSKVYE 1062
A E A + L+ + + H LG+Y + V
Sbjct: 1734 P-----ALTLMEKA----AFEDLK---SKGLIPADATFAGH---SLGEYAALASLADVMS 1778
Query: 1063 LEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQM--- 1119
+E + + R A+ ELG M
Sbjct: 1779 IESL-VEVVFYR-------------------------GMTMQVAVPRDELGRSNYGMIAI 1812
Query: 1120 ------QTLEYEK-QELLKQIQEES-----IASNFLKN----------ELQSLQ------ 1151
+ E Q +++++ + + I N+ N +L++L
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NY--NVENQQYVAAGDLRALDTVTNVL 1869
Query: 1152 DAFSVMKSDNA----SLLLEKNTLMETKL 1176
+ + K D SL LE+ +E L
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEE---VEGHL 1895
Score = 45.8 bits (108), Expect = 1e-04
Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 86/233 (36%)
Query: 789 KRISLFEEN-NAFLQRSILDLERNLDEKLKEFNEKEISYNENIEASNHKIQQLTQET--- 844
KRI EN +A + +I+D + ++ KE NE SY + + TQ T
Sbjct: 1682 KRI---RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLS-ATQFTQPA 1735
Query: 845 ---------DTLKAE-------------------LVAQA-----EST-QLVKQ------- 863
+ LK++ L + A ES ++V
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 864 ----------EQALLAAAPVDDNIVIENQQLKQNLESVKQENTLVVE----NLQNLIAQK 909
++A P + L+ +E V + +VE N++N Q
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN--QQ- 1852
Query: 910 DY----EINAKVTELSIIMEKCKQYEDKCIELESTLDAKLTD-FST---KEQL 954
Y ++ A + ++ ++ K + I++ +L S + L
Sbjct: 1853 -YVAAGDLRA-LDTVTNVLNFIKL---QKIDI-----IELQKSLSLEEVEGHL 1895
Score = 45.8 bits (108), Expect = 2e-04
Identities = 51/252 (20%), Positives = 86/252 (34%), Gaps = 73/252 (28%)
Query: 514 TQLEAAQQGTSSHSHPVDQQVQDRE--SRIEMLSRENEGLRTRVEQLGLVIENNYVQESD 571
+QL+ +Q P + D E + E++ + LG V ++ V+ S
Sbjct: 31 SQLQ--EQFNKILPEPTEGFAADDEPTTPAELVGK----------FLGYV--SSLVEPSK 76
Query: 572 PMNNSLDNTAQLTAEKERLDE-EVTVLSQENI-----ELKKKLEQAVEKQKGLEEEIQQL 625
D L L E E L +I +L ++ + + K K
Sbjct: 77 V--GQFDQVLNLC-----LTEFENCYLEGNDIHALAAKLLQENDTTLVKTK--------- 120
Query: 626 EEDTSILREQLESKDQVDDSIEKT----LRNEIQELHAKLINVEALVNQAQVEKQALDGK 681
+++ + ++ +K L + E +A+L+ A+ Q
Sbjct: 121 ----ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV---AIFGG-----QGNTDD 168
Query: 682 Y-EELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDEKNTLDNIKVEKEN 740
Y EEL++ Y+ T V LIK EL R TLD KV +
Sbjct: 169 YFEELRDLYQ---------TYHVLV--GDLIKFSAETLSELIR-----TTLDAEKVFTQG 212
Query: 741 LEIQ--LDNLNT 750
L I L+N +
Sbjct: 213 LNILEWLENPSN 224
Score = 45.8 bits (108), Expect = 2e-04
Identities = 54/344 (15%), Positives = 110/344 (31%), Gaps = 131/344 (38%)
Query: 49 MLQNEYDD---LKQKFDEVVNRTKSDNG-NQTEV----PTTSTVRNGFELMPNVEDYNEK 100
M + Y + ++ N K G + ++ P T+ G EK
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG----------GEK 1680
Query: 101 IRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFL 160
+ + E S + + E K+ ++I+ E S SY + +S T+ F
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTE---KIFKEIN-EHSTSYTFRSEKGLLS-ATQ---FT 1732
Query: 161 Q-----------EEMQSLKDKLRDLDENVTVEDIKKAN----E-SAIAKKDEVIEKLKAE 204
Q E+++S + + D A E +A+A +V+
Sbjct: 1733 QPALTLMEKAAFEDLKS---------KGLIPADATFAGHSLGEYAALASLADVM------ 1777
Query: 205 LESVEKALR---------EKESEVEEWGNND------------AWGASDDVKEELEKLVV 243
S+E + + +E G ++ A + + ++ +E++
Sbjct: 1778 --SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 244 EKQELIEVIQNH----ETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEA 299
L+E++ N+ + + +G L A ++T+
Sbjct: 1836 RTGWLVEIV-NYNVENQQYV-----------------AAGDLR--A--------LDTVTN 1867
Query: 300 SLKQ-KEQELEGWTDNDNWGSSGNEQDIEALKKE--NEEIKEKL 340
L K Q++ DI L+K EE++ L
Sbjct: 1868 VLNFIKLQKI----------------DIIELQKSLSLEEVEGHL 1895
Score = 43.5 bits (102), Expect = 8e-04
Identities = 84/525 (16%), Positives = 161/525 (30%), Gaps = 176/525 (33%)
Query: 54 YDDLKQKFDEVVNRTKSDNGNQTEVPTTSTVRNGFEL--------MPNVED-----YNEK 100
L+++F++++ ++ + PTT EL VE +++
Sbjct: 30 ASQLQEQFNKILP-EPTEGFAADDEPTTPA-----ELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 101 IR-ALNE-EVSQLKTKENELHSRIEELEDKLQQKIDDEKSV--SY----QLEEKAIEI-- 150
+ L E E L+ N++H+ +L + + K + +Y + ++ +
Sbjct: 84 LNLCLTEFENCYLE--GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 151 -SQL-----TEHNRFL-----Q-------EEMQSLKDKLRDLDENVTVEDIKKANESAIA 192
S L + + + Q EE++ L L V D+ I
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-----VGDL-------IK 189
Query: 193 KKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVI 252
E + +L EK + + + EW N + D L + + LI VI
Sbjct: 190 FSAETLSELIRTTLDAEK-VFTQGLNILEWLENPSNTPDKDY---LLSIPIS-CPLIGVI 244
Query: 253 Q-------------NHETLIAKLEADLTRVK--------------EE------------- 272
Q L + L+ + E
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 273 ------KEA----EVSGKLEQDA----------MV-------KELKSKVETLEASLKQKE 305
EA + + +D+ M+ ++++ V + L +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 306 Q---ELEGWTDN--DNWGSSGNEQDIEALKKENEEIKEKLAKQES----TLAKLKT---- 352
Q L N N SG Q + L + K +S + KLK
Sbjct: 365 QVEISLV----NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 353 -------HSESLQ--KQLLEKEMELE--EWGNND-------SWGGDNDKLATLQQENKVL 394
HS L L+ K++ + D ++ G + L+ + +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-----LRVLSGSI 475
Query: 395 NEKVSELQTQLLSV--EEALKKKENDLEDWGEGDDWGTGNSTELN 437
+E++ + + L V E + K + D+G G G G T N
Sbjct: 476 SERIVDCIIR-LPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 43.1 bits (101), Expect = 0.001
Identities = 87/590 (14%), Positives = 186/590 (31%), Gaps = 197/590 (33%)
Query: 1301 NEMKQSFF--IGDSKDSVRYSDE-EHVQEL---------RELQLMNESLQNEVLRSA-TE 1347
+++++ F + + + DE EL ++ ++VL TE
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 1348 IDNMKETITYLEQYN---LQLSKSQESSTTLT----LLQS----ELAEQRTLNQQ----L 1392
+N YLE + L QE+ TTL L+++ + +R +++ L
Sbjct: 91 FEN-----CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 1393 VQIVNTKHTE----------SNNYHQEILRLNGILSEEL-----PKLKDLGGQVATLEKQ 1437
+ V + + +++Y +E LR +L + DL
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEE-LR-------DLYQTYHVLVGDL---------- 187
Query: 1438 LKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQHVA 1497
+K ++ETL+ +L T A+ + ++ + P P ++ +
Sbjct: 188 IKFSAETLS----ELIRTTLD---AEKVFTQGLNILEWLENPSN--TPDKD--YLLS--I 234
Query: 1498 PVETSRERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLK------QHLL--- 1548
P+ + L + L + +L T LK Q L+
Sbjct: 235 PI---------SCPLIGV----IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 1549 -----KTEED---NTSELVK--------AEQTIQDLHVKLREAEERVKSSATAYTS-ASV 1591
+ E + + + + + + E+ ++++ + S+
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 1592 R--SNQQVEALTSQVKSLTEQKEKLQEKLYQAED--VVQKHQASLTNLQIVLEQFQAEKD 1647
+ +QV+ ++ S ++++ L VV SL L + L + +A
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 1648 NEIAQ----------SLEFLQ-------------GELNNSYAKNNELTQLISTLQ----- 1679
+ ++ S FL +L N N ++ +Q
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 1680 ----HQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVNNGGK 1735
L+ S+ + R+ D + + V E + +A
Sbjct: 462 TFDGSDLRVLSGSI--SERIVDCI---------IRLPVK--WETTTQFKA---------- 498
Query: 1736 VDKCLVTNMIVNFLTAPSRPSR-----HQALQ------ILASVIDMTPQD 1774
T+ I++F P S H+ I+A +D+ P D
Sbjct: 499 ------TH-ILDF--GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 41.6 bits (97), Expect = 0.003
Identities = 57/309 (18%), Positives = 103/309 (33%), Gaps = 90/309 (29%)
Query: 1004 LDEYKQR--VQEL-DAKLAEEIASKT---SIIQTLEIQVKELQDKLRSYTHVENELGQ-- 1055
+D YK Q++ + A+ T SI L+I V L H E G+
Sbjct: 1633 MDLYKTSKAAQDVWNR--ADNHFKDTYGFSI---LDI-VINNPVNL--TIHFGGEKGKRI 1684
Query: 1056 ---YRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDL-----QTQLD-TYNAKITHAA 1106
Y + ++E + +L+ E+ F+ + + L T T A
Sbjct: 1685 RENYSAMIFE-TIVDGKLKTEKI-----FKEINEHSTSYTFRSEKGLLSATQF---TQPA 1735
Query: 1107 LVEQELGEMKNQMQTLEYEKQELLKQ---IQEESI-A--SNFLKNE---LQSLQDAFSVM 1157
L +E E LK I ++ A S L E L SL D S+
Sbjct: 1736 LT------------LMEKAAFEDLKSKGLIPADATFAGHS--L-GEYAALASLADVMSI- 1779
Query: 1158 KSDNASLL----LEKNTLMETKLTLEAQLKELADNETQYKQMQIVY-EDTQRKLNEELAR 1212
++ + + + +A N + + + ++ + + E + +
Sbjct: 1780 -ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR---VAASFSQEALQYVVERVGK 1835
Query: 1213 RDA---TIATLNTTG-----APDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAAL 1264
R I N A DL A ++ T++ +L + + + E+Q +L
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRA-LD--------TVTNVLNFIKLQKIDIIELQKSL 1886
Query: 1265 -----EKHL 1268
E HL
Sbjct: 1887 SLEEVEGHL 1895
Score = 35.0 bits (80), Expect = 0.35
Identities = 33/216 (15%), Positives = 57/216 (26%), Gaps = 103/216 (47%)
Query: 1503 RERNELALRLQNLQEEKTM---LLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTS--- 1556
RE N A+ + + + K + EIN+ T +E L T+ T
Sbjct: 1685 RE-NYSAMIFETIVDGKLKTEKIFKEINE-HSTSYTFRSEKGLLSA----TQ--FTQPAL 1736
Query: 1557 --------ELVKAEQTIQDL-----H-----------------------VKLR-----EA 1575
E +K++ I H V R A
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 1576 EERVKSSATAYTSASVR-----------------------------------SNQQ---- 1596
R + + Y ++ NQQ
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 1597 -----VEALTSQVKSLTEQK---EKLQEKLYQAEDV 1624
++ +T+ + + QK +LQ+ L E+V
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSL-SLEEV 1891
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 70.9 bits (174), Expect = 4e-12
Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 28/272 (10%)
Query: 89 ELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAI 148
+ +R I++ ++ Y KAI
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH------YHRTLKAI 890
Query: 149 EISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESV 208
Q + E++ LK + R ++ + + E+ I + I++ E +S+
Sbjct: 891 VYLQCCYRRMMAKRELKKLKIEARSVER---YKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 209 EKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTR 268
+ + E E L E + + + + IAKL +L +
Sbjct: 948 LEKMNNLEITYSTETE-----KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 269 VKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEA 328
+ EK+ + ++L S+++ LK +++EL + I
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL--------------NRRIHD 1048
Query: 329 LKKENEEIKEKLAKQESTLAKLKTHSESLQKQ 360
KE E EK +E+ +L + E L+ Q
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 60.9 bits (148), Expect = 3e-09
Identities = 37/260 (14%), Positives = 94/260 (36%), Gaps = 21/260 (8%)
Query: 603 ELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLI 662
++K+ + + L+ ++ E K + I+K +R + +H
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSII---IQKHVRGWLARVHYHRT 886
Query: 663 NVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEEL- 721
+ Q + + ++LK + + + G L++K +L
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG------------LENKIMQLQ 934
Query: 722 CRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKN 781
++ ++ ++ + NLEI + + L S+ + + + + + Q
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ---- 990
Query: 782 NEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENIEASNHKIQQLT 841
EI L K + + ++ + ++ + E E+ E N +I
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050
Query: 842 QE-TDTLKAELVAQAESTQL 860
+E T+T++ +LV + + +L
Sbjct: 1051 KEITETMEKKLVEETKQLEL 1070
Score = 58.6 bits (142), Expect = 2e-08
Identities = 28/226 (12%), Positives = 76/226 (33%), Gaps = 8/226 (3%)
Query: 926 KCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQA 985
+ E K I ++ + L L + + E +K ++
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Query: 986 LTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRS 1045
+ N + ++ +DE + + L K+ + ++ + L V+ L+
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Query: 1046 YTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHA 1105
+ N + + ++ +L + + + E+ + + L ++L N +
Sbjct: 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL--- 1035
Query: 1106 ALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQ 1151
+ E E+ ++ E E +++ E L+ +L +
Sbjct: 1036 ---KTEKEELNRRIHDQAKEITETMEKKLVEETKQ--LELDLNDER 1076
Score = 56.7 bits (137), Expect = 7e-08
Identities = 43/350 (12%), Positives = 103/350 (29%), Gaps = 43/350 (12%)
Query: 1010 RVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELEQIQAR 1069
+V L+ A+++ + IQ +R + + +Y IQ
Sbjct: 755 QVAYLEKIRADKLRAACIRIQK----------TIRGWLMRK----KYMRMRRAAITIQRY 800
Query: 1070 LEAERTQWIHEFEVKTNTLSDLQTQLDTYNA-----KITHAALVEQELGEMKNQMQTLEY 1124
+ + + F +T +Q Y + A + Q L +
Sbjct: 801 VRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM 860
Query: 1125 EKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEK------------NTLM 1172
+E I ++ + + A ++ ++ ++
Sbjct: 861 MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYK 920
Query: 1173 ETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASI 1232
+ + LE ++ +L + + + L + + +
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR--------SDVERL 972
Query: 1233 ENILKEKDATLSEMLKKSEAKDKTLQEMQAALE--KHLSEKYQFEKEALELRTEDLEYKL 1290
+E + +L E K +E+ K + E K E +L+ +
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 1291 QEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNE 1340
+ +ELN + +++ E ++L EL L +E L+ +
Sbjct: 1033 TLLKTEKEELNRRIHD-QAKEITETMEKKLVEETKQL-ELDLNDERLRYQ 1080
Score = 56.7 bits (137), Expect = 7e-08
Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 25/235 (10%)
Query: 491 LREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDR----ESRIEMLSR 546
LRE ++ QK + L+A + + ++ + +E +
Sbjct: 862 LREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921
Query: 547 ENEGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKK 606
+ GL ++ QL I+ + E + L E++ L +
Sbjct: 922 LHIGLENKIMQLQRKID------------------EQNKEYKSLLEKMNNLEITYSTETE 963
Query: 607 KLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEA 666
KL VE+ + EEE + L+E++ + + + + E
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 667 LVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEEL 721
LV++ + + L + EEL + +++ K + K L+ +
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK---KLVEETKQLELDLNDE 1075
Score = 56.3 bits (136), Expect = 1e-07
Identities = 30/198 (15%), Positives = 76/198 (38%), Gaps = 21/198 (10%)
Query: 581 AQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKD 640
A+ +K +++ + +L LE + + L+ +I + ++ L E++ +
Sbjct: 902 AKRELKKLKIEARSV---ERYKKLHIGLENKIMQ---LQRKIDEQNKEYKSLLEKMNN-- 953
Query: 641 QVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQT 700
L KL + + ++ E + + L+E+ ++ ++
Sbjct: 954 ---------LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Query: 701 GKDSVDIDTLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLI 760
+ I+ + + E+L L E+NTL +K EKE L ++ + + + +
Sbjct: 1005 -TEKKTIEEWADKYKHETEQLVSELKEQNTL--LKTEKEELNRRIHDQAKEITETMEKKL 1061
Query: 761 QSKND-LEAKISELNNAQ 777
+ LE +++
Sbjct: 1062 VEETKQLELDLNDERLRY 1079
Score = 52.8 bits (127), Expect = 1e-06
Identities = 35/294 (11%), Positives = 91/294 (30%), Gaps = 48/294 (16%)
Query: 1001 RKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKV 1060
RK + L A L + + E + +Q +R + + ++ V
Sbjct: 832 RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV 891
Query: 1061 Y---ELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKN 1117
Y ++ A+ E ++ + L L+ ++ +++ E
Sbjct: 892 YLQCCYRRMMAKRELKK---LKIEARSVERYKKLHIGLENKIMQLQ------RKIDEQNK 942
Query: 1118 QMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLT 1177
+ ++L + L E +L+S + + + + + +L E
Sbjct: 943 EYKSLLEKMNNLEITYSTE-------TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Query: 1178 LEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENILK 1237
L +L + + ++ + E + E ++
Sbjct: 996 LRKELHQT--------------QTEKKTIEEWADK---------------YKHETEQLVS 1026
Query: 1238 EKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQ 1291
E + + + E ++ + + + + + +K E + LEL D + Q
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 52.8 bits (127), Expect = 1e-06
Identities = 21/206 (10%), Positives = 74/206 (35%), Gaps = 9/206 (4%)
Query: 879 IENQQLKQNLESVKQENTLVVENLQNLIAQKDYE-INAKVTELSIIMEKCKQYEDKCIEL 937
+ + + + + + ++A+++ + + + + + E+K ++L
Sbjct: 874 VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 938 ESTLD------AKLTDFSTKEQLNKNK-MAELSAMLESVQAENISIKQMNEELQALTETL 990
+ +D L + ++ + +L + +E ++ K + +L E +
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 991 KQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVE 1050
+ + + ++ + + + ++ L+ + +EL ++
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Query: 1051 NELGQYRSKVYELEQIQARLEAERTQ 1076
E + V E +Q++ L ER +
Sbjct: 1054 TET-MEKKLVEETKQLELDLNDERLR 1078
Score = 52.4 bits (126), Expect = 1e-06
Identities = 34/306 (11%), Positives = 94/306 (30%), Gaps = 60/306 (19%)
Query: 253 QNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWT 312
+ ++ + A ++ + ++ ++ V A +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK---- 888
Query: 313 DNDNWGSSGNEQDIEALKKENEEIKE--KLAKQESTLAKLKTHSESLQKQLLEKEMELEE 370
++ + +E KL + ++ + K L+ ++++ + +++E
Sbjct: 889 ---------AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939
Query: 371 WGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGT 430
+E K L EK++ L+ + E L+ L E
Sbjct: 940 ----------------QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE------ 977
Query: 431 GNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNT 490
E N + ++ I +L+ + + E ++ E ++
Sbjct: 978 ----EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSE 1027
Query: 491 LREESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEG 550
L+E++ LL+ + E L ++ + + + + + L +
Sbjct: 1028 LKEQNTLLKTEKEE-------LNRRIHDQAKEIT------ETMEKKLVEETKQLELDLND 1074
Query: 551 LRTRVE 556
R R +
Sbjct: 1075 ERLRYQ 1080
Score = 51.3 bits (123), Expect = 3e-06
Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 27/280 (9%)
Query: 646 IEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSV 705
I+K R + + + + QA + + KY+ + +++ + + + V
Sbjct: 822 IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARV 881
Query: 706 DIDTLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKND 765
+K + + R++ ++ L +K+E ++E +
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKR-ELKKLKIEARSVE---------------RYKKLHIG 925
Query: 766 LEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLE---RNLDEKLKEFNEK 822
LE KI +L +N E L ++++ E + + R +E+ K +
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
Query: 823 EISYNENIEASNHKIQQLTQETDTLKAELVA-QAESTQLVKQEQALLAAAPVDDNIVIEN 881
+S E I ++ Q E T++ + E+ QLV + + + E
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT------LLKTEK 1039
Query: 882 QQLKQNLES-VKQENTLVVENLQNLIAQKDYEINAKVTEL 920
++L + + K+ + + L Q + ++N +
Sbjct: 1040 EELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 50.9 bits (122), Expect = 5e-06
Identities = 33/261 (12%), Positives = 85/261 (32%), Gaps = 22/261 (8%)
Query: 1435 EKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQ 1494
+ ++ + L R + + + + Q + V Q
Sbjct: 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894
Query: 1495 HVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDN 1554
R + L+ ++ +++ L N+ +L++ + + ++
Sbjct: 895 ----CCYRRMMAKRELKKLKIEARSVERYKKLH------IGLENKIMQLQRKIDEQNKEY 944
Query: 1555 ---TSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQK 1611
++ E T KLR ER++ S +A +V +L ++ L ++
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA----TNRVLSLQEEIAKLRKEL 1000
Query: 1612 EKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAE---KDNEIAQSLEFLQGELNNSYAKN 1668
+ Q + E+ K++ L L++ + E+ + + E+ +
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET--ME 1058
Query: 1669 NELTQLISTLQHQLQEARESL 1689
+L + L+ L + R
Sbjct: 1059 KKLVEETKQLELDLNDERLRY 1079
Score = 49.7 bits (119), Expect = 9e-06
Identities = 42/313 (13%), Positives = 102/313 (32%), Gaps = 69/313 (22%)
Query: 330 KKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQ 389
+K + +++ ++ L ++ K + +++ +
Sbjct: 832 RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK------------HVRGWLA 879
Query: 390 ENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKT 449
+ + Q + K+E +L ++K
Sbjct: 880 RVHYHRTLKAIVYLQCC-YRRMMAKRELK----------------KLKIEARSVERYKKL 922
Query: 450 IVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNTLREESGLLRQKLSEQKVII 509
+ L+++ L++ + ++ E L E+ L S +
Sbjct: 923 HIGLENKIMQLQRKIDEQNKEYKS-----------------LLEKMNNLEITYSTET--- 962
Query: 510 SKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQE 569
KL++ +E + +++ ++ +R+ L E LR + Q E ++E
Sbjct: 963 EKLRSDVERLRM--------SEEEAKNATNRVLSLQEEIAKLRKELHQTQT--EKKTIEE 1012
Query: 570 SDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEK-----QKGLEEEIQQ 624
+ + L E+ T+L E EL +++ ++ +K L EE +Q
Sbjct: 1013 W-----ADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Query: 625 LEEDTSILREQLE 637
LE D + R + +
Sbjct: 1068 LELDLNDERLRYQ 1080
Score = 44.3 bits (105), Expect = 4e-04
Identities = 47/302 (15%), Positives = 107/302 (35%), Gaps = 34/302 (11%)
Query: 1233 ENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQE 1292
+ + + A + + ++ K Q M + + Q +R + +
Sbjct: 811 TFLRRTRAAIIIQKFQRMYVVRKRYQCM-----RDATIALQALLRGYLVRNKYQMMLREH 865
Query: 1293 KEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMK 1352
K +IQ+ + R + ++M + ++ A ++ K
Sbjct: 866 KSIIIQKHVRGWLA-----RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYK 920
Query: 1353 ETITYLEQYNLQLSKSQESSTTLTLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILR 1412
+ LE +QL + + + E ++L +++ + T TE+ ++ R
Sbjct: 921 KLHIGLENKIMQLQRK---------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Query: 1413 LNGILSEELPKLKDLGGQVATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEE-VTQ 1471
L E K+ +V +L++++ + L + + +E + + E+ V++
Sbjct: 972 LRMSEEE----AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 1472 LMSSNDRPEADGEPAQEREVVAQHVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRL 1531
L N + + E R + Q ET ++ L EE L ++ND RL
Sbjct: 1028 LKEQNTLLKTEKE-ELNRRIHDQAKEITETMEKK---------LVEETKQLELDLNDERL 1077
Query: 1532 NQ 1533
Sbjct: 1078 RY 1079
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 53.5 bits (129), Expect = 6e-07
Identities = 26/234 (11%), Positives = 75/234 (32%), Gaps = 18/234 (7%)
Query: 137 KSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDE 196
S+ + +IE Q + ++ + + ++ + K++
Sbjct: 787 ASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLR--LIKREP 844
Query: 197 VIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHE 256
+ ++ E +E E L + ++++ ++Q +
Sbjct: 845 FVAPAGLTPNEIDSTWSALEKAEQEH------------AEALRIELKRQKKIAVLLQKYN 892
Query: 257 TLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDN 316
++ KLE T + +G V+ +E + + E + +D +
Sbjct: 893 RILKKLENWATTKSVYLGSNETGDSIT--AVQAKLKNLEAFDGECQSLEGQSN--SDLLS 948
Query: 317 WGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEE 370
+ E + + + E A+Q + + ++ LE+ ++E+
Sbjct: 949 ILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 1002
Score = 47.4 bits (113), Expect = 6e-05
Identities = 33/296 (11%), Positives = 95/296 (32%), Gaps = 42/296 (14%)
Query: 1011 VQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELEQIQARL 1070
+ ++ + + S+ + L+ + L + + + + R +E +Q+ +
Sbjct: 751 LARIEEAREQRLGSEQTKSDYLKRANE-----LVQWINDKQASLESRDFGDSIESVQSFM 805
Query: 1071 EAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELL 1130
A + E K +S+L+ ++ K+ E + ++ L
Sbjct: 806 NAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKR-EPFVAPAGLTPNEIDSTWSALE 864
Query: 1131 KQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNET 1190
K QE + A + ++LL+K + KL A K +
Sbjct: 865 KAEQEHAEALRIELKRQK------------KIAVLLQKYNRILKKLENWATTKSVYLGSN 912
Query: 1191 QYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKK- 1249
+ + + L +++ + ++ L +L +
Sbjct: 913 ETGDSITAVQAKLKNLEAFDGEC-------------------QSLEGQSNSDLLSILAQL 953
Query: 1250 SEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNEMKQ 1305
+E + E+ + ++ + ++ E + L + + +Q++ ++
Sbjct: 954 TELNYNGVPELTERKDTFFAQ----QWTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
Score = 43.1 bits (102), Expect = 0.001
Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 14/185 (7%)
Query: 1448 KERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQHVAPVETSRERNE 1507
+ +L + + ++ A E+ S+ ++ R + + ++ N
Sbjct: 835 TKLRLIKREPFVAPAGLTPNEIDSTWSALEK-AEQEHAEALRIELKRQKKIAVLLQKYNR 893
Query: 1508 LALRLQNLQEEKT--MLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKA-EQT 1564
+ +L+N K+ + E D E E + S+L+ Q
Sbjct: 894 ILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 953
Query: 1565 IQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDV 1624
+ + + E ER + QQ + S ++ E+L + ED+
Sbjct: 954 TELNYNGVPELTERKDTFFA----------QQWTGVKSSAETYKNTLLAELERLQKIEDL 1003
Query: 1625 VQKHQ 1629
H
Sbjct: 1004 HHHHH 1008
Score = 38.1 bits (89), Expect = 0.033
Identities = 17/196 (8%), Positives = 55/196 (28%), Gaps = 14/196 (7%)
Query: 440 RAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNTLREESGLLR 499
+ + +++ + + ++ S + + + + +++ +L
Sbjct: 829 IYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL 888
Query: 500 QKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLG 559
QK + + T + D + ++ + E + L
Sbjct: 889 QKYNRILKKLENWATTKSVYLG---------SNETGDSITAVQAKLKNLEAFDGECQSLE 939
Query: 560 LVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLE 619
++ + + N E + + T +Q+ +K E
Sbjct: 940 GQSNSDLLSILAQLTELNYNG-----VPELTERKDTFFAQQWTGVKSSAETYKNTLLAEL 994
Query: 620 EEIQQLEEDTSILREQ 635
E +Q++E+
Sbjct: 995 ERLQKIEDLHHHHHHH 1010
Score = 34.3 bits (79), Expect = 0.49
Identities = 20/169 (11%), Positives = 53/169 (31%), Gaps = 15/169 (8%)
Query: 500 QKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLG 559
I + LE A+Q + ++ + ++ +R + L
Sbjct: 847 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS 906
Query: 560 LVIENN-YVQESDPMNNSLDNTAQLTAEKERL-----DEEVTVLSQENIELKKKLEQAVE 613
+ + +N + L N E + L + +++L+Q + + E
Sbjct: 907 VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTE 966
Query: 614 KQKG-LEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKL 661
++ ++ ++ + L + E +I++LH
Sbjct: 967 RKDTFFAQQWTGVKSSAETYKNTLLA--------ELERLQKIEDLHHHH 1007
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 51.4 bits (122), Expect = 3e-06
Identities = 42/382 (10%), Positives = 116/382 (30%), Gaps = 5/382 (1%)
Query: 94 VEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQL 153
E + + A+ ++ +E+ + +++ E + V
Sbjct: 382 HESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELD 441
Query: 154 TEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALR 213
+ + Q + D+ +L + ++A E + + + +
Sbjct: 442 YYDSPSVNARCQKICDQWDNLGALT--QKRREALERTEKLLETIDQLYLEYAKRAAPFNN 499
Query: 214 EKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEK 273
E +E+ + ++++ K L + + + ++ V+
Sbjct: 500 WMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYH 559
Query: 274 EAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKEN 333
+E+ K E + + +++Q L +Q
Sbjct: 560 VNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIG 619
Query: 334 EEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGN--NDSWGGDNDKLATLQQEN 391
I+ K+ + ++ E L + E + + + G L +N
Sbjct: 620 PWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDN 679
Query: 392 KVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIV 451
K N + ++ + + + N++E+ D + ++N RA + F++
Sbjct: 680 KHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKT 739
Query: 452 ELKSQEELLKQALIDKENELSE 473
+ E+ + LI + E
Sbjct: 740 GMMDCED-FRACLISMGYNMGE 760
Score = 44.1 bits (103), Expect = 4e-04
Identities = 53/495 (10%), Positives = 142/495 (28%), Gaps = 27/495 (5%)
Query: 144 EEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKA 203
+ I + NR + MQ+++ KL D + + K E + + L+
Sbjct: 262 LLEWIRRTIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKC--QLEINFNTLQT 319
Query: 204 ELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLE 263
+L + N+AWG + ++ E+ + I ++ + L K
Sbjct: 320 KLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWL---LNEIRRLERLDHLAEKFR 376
Query: 264 ADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNE 323
+ E L+Q S+++ L + E +L D ++ +
Sbjct: 377 QKASIH-ESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQ 435
Query: 324 QDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDK 383
+ E ++ + + K L ++ ++ L E LE
Sbjct: 436 ELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAA 495
Query: 384 LATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKC 443
E + + + + + + ++ E + D E +
Sbjct: 496 PFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADK-------ERQAILGIH 548
Query: 444 SEFEKTIVELKSQ-EELLKQALIDKENELSEWGQTNEWGSPSSSDLNTLREESGLLRQKL 502
+E K + I + +W + L +
Sbjct: 549 NEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLR 608
Query: 503 SEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTR---VEQLG 559
+ + + ++ + S + ++D+ + + + + + +E
Sbjct: 609 KQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDH 668
Query: 560 LVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLE 619
I+ + ++ N ++++ + L ++E + +
Sbjct: 669 QQIQEALIFDNKHTNYTMEH----------IRVGWEQLLTTIARTINEVENQILTRDAKG 718
Query: 620 EEIQQLEEDTSILRE 634
+Q+ E +
Sbjct: 719 ISQEQMNEFRASFNH 733
Score = 43.7 bits (102), Expect = 6e-04
Identities = 71/536 (13%), Positives = 162/536 (30%), Gaps = 26/536 (4%)
Query: 955 NKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQEL 1014
L+ E+ Q K ++ L+ + T+ N E+ + +Q++++
Sbjct: 235 ANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENT--MQAMQQKLEDF 292
Query: 1015 DAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTH--VENELGQYRSKVYELEQIQARLEA 1072
K LEI LQ KLR G+ S + + E
Sbjct: 293 RDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEK 352
Query: 1073 ERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQ 1132
+W+ + L+ A++ E + +Q +YE L +
Sbjct: 353 GYEEWLLN------EIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYE-TATLSE 405
Query: 1133 IQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQY 1192
I+ +++L + QD + + L + + A+ +++ D
Sbjct: 406 IKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPS---VNARCQKICDQWDNL 462
Query: 1193 KQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEA 1252
+ + + + L D AP N + +D + +++ +
Sbjct: 463 GALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQG 522
Query: 1253 KDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNEMKQSFFIGDS 1312
++ +A L E+ E+ Y + ++ +
Sbjct: 523 LTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEH 582
Query: 1313 KDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQYNLQLSKSQESS 1372
+ ++ + E Q NE L+ + A I +T K +E
Sbjct: 583 VRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQT------------KMEEIG 630
Query: 1373 TTLTLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVA 1432
+ L +Q +Q + + + + + ++ L + +
Sbjct: 631 RISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIR 690
Query: 1433 TLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQE 1488
+QL TT + T++ ++Q Q+ E + DR + ++
Sbjct: 691 VGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCED 746
Score = 42.6 bits (99), Expect = 0.002
Identities = 60/532 (11%), Positives = 159/532 (29%), Gaps = 29/532 (5%)
Query: 811 NLDEKLKEFNEKEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAA 870
+ +E + Y + I++ + E QA +L
Sbjct: 240 KVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENTMQAMQQKLEDFRDYRRLH 299
Query: 871 APVDDNIVIENQQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQY 930
P + + L++ + + + +IN L + +++
Sbjct: 300 KPPKVQEKCQLEINFNTLQTKLRLSNR--PAFMPSEGKMVSDINNAWGGLEQAEKGYEEW 357
Query: 931 EDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETL 990
I LD F K ++++ AML+ E ++ ++ L+
Sbjct: 358 LLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLK------ 411
Query: 991 KQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVE 1050
HE L ++ RV+++ A E ++ + +++ D+ ++
Sbjct: 412 -----KHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWD---NLG 463
Query: 1051 NELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQ 1110
+ R + E++ ++ ++ N + L ++
Sbjct: 464 ALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIV-HTIEEIQG 522
Query: 1111 ELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNT 1170
+ TL +E + + S ++ ++ + +
Sbjct: 523 LTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEH 582
Query: 1171 LMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNA 1230
+ + + L E + Q ++++ + + + + I ++ L
Sbjct: 583 VRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLED 642
Query: 1231 SIENI--LKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEY 1288
+ ++ ++ + + E + +QE KH + + + E +
Sbjct: 643 QLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIAR 702
Query: 1289 KLQEKEKMIQ----------ELNEMKQSFFIGDSKDSVRYSDEEHVQELREL 1330
+ E E I ++NE + SF D K + E+ L +
Sbjct: 703 TINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISM 754
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 50.0 bits (120), Expect = 7e-06
Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 7/178 (3%)
Query: 200 KLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLI 259
+L+A S++ LR + E D LEK E E + + + I
Sbjct: 817 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 876
Query: 260 AKLEADLTRVKEEKEAEVS------GKLEQDAMVKELKSKVETLEASLKQKEQELEGW-T 312
A L R+ ++ E + G E + +++K++ LEA + + +
Sbjct: 877 AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS 936
Query: 313 DNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEE 370
D + + E + + + E A+Q + + ++ LE+ ++E+
Sbjct: 937 DLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
Score = 37.7 bits (88), Expect = 0.045
Identities = 26/205 (12%), Positives = 57/205 (27%), Gaps = 39/205 (19%)
Query: 1419 EELPKLKDLGGQVATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDR 1478
L K + ++ +T L E++ AE Q ++ + Q
Sbjct: 829 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ------- 881
Query: 1479 PEADGEPAQEREVVAQHVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYN 1538
R + E + L + T + ++ +L
Sbjct: 882 -------KYNRILKKL-----ENWATTKSVYLGSNETGDSITAVQAKLKNLE-------A 922
Query: 1539 ENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVE 1598
+ + ++ D S L + + + +L E ++ QQ
Sbjct: 923 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFF-------------AQQWT 969
Query: 1599 ALTSQVKSLTEQKEKLQEKLYQAED 1623
+ S ++ E+L + ED
Sbjct: 970 GVKSSAETYKNTLLAELERLQKIED 994
Score = 33.9 bits (78), Expect = 0.72
Identities = 13/167 (7%), Positives = 50/167 (29%), Gaps = 10/167 (5%)
Query: 492 REESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGL 551
+ ++ + +++ + A ++ H+ + +++ ++ +L + N L
Sbjct: 828 KLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRIL 887
Query: 552 RTRVEQLGLVIENNYVQESDPMNNSLDNTA-QLTAEKERLDEEVTVLSQENIELKKKLEQ 610
+ E+ ++ L A + + + + +L +
Sbjct: 888 KKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTE 947
Query: 611 AVE---------KQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEK 648
K ++ ++ + L ++ + IE
Sbjct: 948 LNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 49.1 bits (117), Expect = 1e-05
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 8/139 (5%)
Query: 590 LDEEVTVLSQENIELK---KKLEQAVEKQ-KGLEEEIQQLEEDTSILREQLESKDQVDDS 645
LDE + K + + +E +QQ T + ++ + S
Sbjct: 11 LDERFGSYCPTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70
Query: 646 IEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSV 705
++TL I++L K + + + + A + ++L + + S K K
Sbjct: 71 EKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQK--- 127
Query: 706 DIDTLIKNLQSKKEELCRL 724
I L + Q ++ +
Sbjct: 128 -IAQLESHCQEPCKDTAEI 145
Score = 43.7 bits (103), Expect = 4e-04
Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 1606 SLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSY 1665
+ + +L + E ++Q+ S +++ +++ + +E L +
Sbjct: 28 FFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQT----LPQSIEQLT 83
Query: 1666 AKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEA 1725
K+ ++ + I ++ + ++ L+D S I +L +K+ QL +
Sbjct: 84 QKSKKIIEEIIRYENTILAHENTIQQ---LTDMHIMNSNKITQLKQKIAQLESHCQEPCK 140
Query: 1726 KLKEVNN 1732
E+
Sbjct: 141 DTAEIQE 147
Score = 38.0 bits (88), Expect = 0.028
Identities = 15/133 (11%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 289 ELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLA 348
+ + + E+EG + E I+ +K + ++
Sbjct: 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIK---TIYPSEKQTLPQSIE 80
Query: 349 KLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQENKVLNEKVSELQTQLLSV 408
+L S+ + ++++ E + N + L + + + K+++L+ ++ +
Sbjct: 81 QLTQKSKKIIEEIIRYENTILAHENT---------IQQLTDMHIMNSNKITQLKQKIAQL 131
Query: 409 EEALKKKENDLED 421
E ++ D +
Sbjct: 132 ESHCQEPCKDTAE 144
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 47.6 bits (112), Expect = 4e-05
Identities = 48/251 (19%), Positives = 111/251 (44%), Gaps = 8/251 (3%)
Query: 579 NTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES 638
L K + + T E + +K LE+++ K++ LE+E+++ E S + ++E+
Sbjct: 590 AGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEA 649
Query: 639 KDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFEN 698
K Q + ++ I + + A + K+ L K E++ + + S+ F+
Sbjct: 650 KAQANSQKDEIFA-LINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDE 708
Query: 699 QTGKDSVDIDTLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINT 758
+ D + L++ K + L + + ENL L+ +
Sbjct: 709 FKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKV----ENLNAALNEFKNGKNKDFSK 764
Query: 759 LIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAF--LQRSILDLERNLDEKL 816
+ Q+K+DLE + ++ Q +++++LN+ +S+ + F +++ + DL+ E+L
Sbjct: 765 VTQAKSDLENSVKDVIINQ-KVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQL 823
Query: 817 KEFNEKEISYN 827
+ +K +N
Sbjct: 824 AQQAQKNEDFN 834
Score = 31.0 bits (69), Expect = 4.8
Identities = 35/299 (11%), Positives = 92/299 (30%), Gaps = 10/299 (3%)
Query: 762 SKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNE 821
+ +LE K++ + N I D +++ + + E +
Sbjct: 557 VRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKST--GNYDEVKK 614
Query: 822 KEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIEN 881
+ +++ H +++ ++ ++ Q Q+ + A + N
Sbjct: 615 AQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARA 674
Query: 882 QQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIELESTL 941
QNL+ +K+E + +E + + + + K ++ L
Sbjct: 675 IAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDL 734
Query: 942 DAKLTDFSTKEQLNK-------NKMAELSAMLESVQAENISIKQMNEELQALTETLKQTS 994
S E LN K + S + ++ S+K + Q +T+ + +
Sbjct: 735 GINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIIN-QKVTDKVDNLN 793
Query: 995 NTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENEL 1053
+ + D + D K + + + + + +S + N+
Sbjct: 794 QAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSELYQSVKNSVNKT 852
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 44.6 bits (104), Expect = 3e-04
Identities = 42/331 (12%), Positives = 106/331 (32%), Gaps = 12/331 (3%)
Query: 97 YNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEH 156
K +N ++Q++ + + L + +V + K+ + +
Sbjct: 377 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGI 436
Query: 157 NRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKE 216
+ + ++ L + L+ E +++ + + A +++ K K + K
Sbjct: 437 QT-VDQLIKELPELLQRNRE--ILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKP 493
Query: 217 SEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAE 276
E + ++++ ++ I ++ E + K + +E
Sbjct: 494 LRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSE 553
Query: 277 VSGKLEQ-DAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEE 335
V L+ + + E+K + E LE LK ++ + + + I E
Sbjct: 554 VVNVLKSLLSNLDEVKKEREGLENDLKSVNFDM----TSKFLTALAQDGVINEEALSVTE 609
Query: 336 IKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDND----KLATLQQEN 391
+ + + + E L K + E + +++ + LAT
Sbjct: 610 LDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNF 669
Query: 392 KVLNEKVSELQTQLLSVEEALKKKENDLEDW 422
L + E + E L + +N D
Sbjct: 670 VELVANLKEGTKFYNELTEILVRFQNKCSDI 700
Score = 42.2 bits (98), Expect = 0.002
Identities = 54/337 (16%), Positives = 115/337 (34%), Gaps = 17/337 (5%)
Query: 881 NQQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIELEST 940
+ +++ +++ TL L +L E + T I+ K + ++ T
Sbjct: 381 ADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQ--GGIQT 438
Query: 941 LDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEED 1000
+D + + Q N+ + E +L+ +A + ++ +E T + + E
Sbjct: 439 VDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEG 498
Query: 1001 RKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKV 1060
+ + D ++ E S I L EL + S + Q V
Sbjct: 499 TN-FRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSAN--PAKTMQGSEVV 555
Query: 1061 YELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQ 1120
L+ + + L+ + + + +DL++ +K A + + E +
Sbjct: 556 NVLKSLLSNLDEVKKE-------REGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVT 608
Query: 1121 TLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEA 1180
L+ L ++QE L +Q FS MK N + +++ T
Sbjct: 609 ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNE-ANLREEVLKNLATAYD 667
Query: 1181 QLKELADN----ETQYKQMQIVYEDTQRKLNEELARR 1213
EL N Y ++ + Q K ++ + R
Sbjct: 668 NFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 704
Score = 41.9 bits (97), Expect = 0.002
Identities = 44/308 (14%), Positives = 110/308 (35%), Gaps = 23/308 (7%)
Query: 600 ENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHA 659
+ L V L I+ + DT +S+ ++ +T+ I+EL
Sbjct: 389 AQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPE 448
Query: 660 KLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKE 719
L +++++ + +L+ K+++ ++ + + L K L+++
Sbjct: 449 LLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS---------NELYKPLRAEGT 499
Query: 720 ELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHN 779
+LD+ D Q+ +++D I L + + +L A I N A+
Sbjct: 500 NFRTVLDKAVQADG----------QVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTM 549
Query: 780 KN----NEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENIEASNH 835
+ N + L + ++ L+ + + ++ K ++ NE +
Sbjct: 550 QGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTE 609
Query: 836 KIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNLESVKQEN 895
+ T ++ L Q + ++ + +N +++ +NL +
Sbjct: 610 LDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNF 669
Query: 896 TLVVENLQ 903
+V NL+
Sbjct: 670 VELVANLK 677
Score = 41.1 bits (95), Expect = 0.004
Identities = 39/281 (13%), Positives = 91/281 (32%), Gaps = 11/281 (3%)
Query: 1454 ETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQHVAPVETSRERNELALRLQ 1513
E ++ QS L + ++ D + E++ ++ ++ S +
Sbjct: 412 EDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATD 471
Query: 1514 NLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNT---SELVKAEQTIQDLHV 1570
N K + L E + L K + + TI L
Sbjct: 472 NDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCK 531
Query: 1571 KLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQA 1630
E + S+ A T +++L S + + +++E L+ L +
Sbjct: 532 PEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFL 591
Query: 1631 SLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLS 1690
+ V+ +A E+ + L ++ S K L + +Q + + S
Sbjct: 592 TALAQDGVI-NEEALSVTELDRVYGGLTTKVQESLKKQEGLLK-------NIQVSHQEFS 643
Query: 1691 AAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVN 1731
+ +++ N + + ++ L + +E + + K N
Sbjct: 644 KMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYN 684
Score = 36.9 bits (84), Expect = 0.069
Identities = 48/432 (11%), Positives = 130/432 (30%), Gaps = 20/432 (4%)
Query: 948 FSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRK----I 1003
+ + E A L+ ++ +E + + + + +K I
Sbjct: 265 HQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFI 324
Query: 1004 LDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYEL 1063
+ +++LD + T + + + +L +K+ + ++ + K +
Sbjct: 325 YHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLV 384
Query: 1064 EQIQARLEA---ERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQ 1120
+ A++ + + + + + + + + + ++
Sbjct: 385 NRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIK 444
Query: 1121 TLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEA 1180
L Q + + E + + L+ F S L K L
Sbjct: 445 ELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKP-LRAEGTNFRT 503
Query: 1181 QLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAPDLNASIENI----- 1235
L + + Q K+ + DT L + +A I + N + + +
Sbjct: 504 VLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLS 563
Query: 1236 ----LKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKE---ALELRTEDLEY 1288
+K++ L LK + A + ++E+ E T ++
Sbjct: 564 NLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQE 623
Query: 1289 KLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEI 1348
L+++E +++ + Q F ++ EE ++ L L +
Sbjct: 624 SLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFY 683
Query: 1349 DNMKETITYLEQ 1360
+ + E + +
Sbjct: 684 NELTEILVRFQN 695
Score = 33.8 bits (76), Expect = 0.66
Identities = 42/303 (13%), Positives = 101/303 (33%), Gaps = 22/303 (7%)
Query: 766 LEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEIS 825
+ I+++ A N + LN ++ + + + +SIL R++ E+ +
Sbjct: 384 VNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQ-GGIQTVDQL 442
Query: 826 YNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLK 885
E E + L + L E + K+ + + + E +
Sbjct: 443 IKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFR 502
Query: 886 QNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIELESTLDAKL 945
L+ Q + V E Q+ I+ CK + + S AK
Sbjct: 503 TVLDKAVQADGQVKECYQSHRDT--------------IVLLCKPEPELNAAIPSANPAKT 548
Query: 946 TDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILD 1005
S + K+ ++ L + + + +K +N ++ + T E+ +
Sbjct: 549 MQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVT 608
Query: 1006 EYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELEQ 1065
E + L K+ E + + ++ K +Q + ++ ++ + + L+
Sbjct: 609 ELDRVYGGLTTKVQESLKKQEGLL-------KNIQVSHQEFSKMKQSNNEANLREEVLKN 661
Query: 1066 IQA 1068
+
Sbjct: 662 LAT 664
Score = 31.1 bits (69), Expect = 4.7
Identities = 17/132 (12%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 89 ELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAI 148
+ +++L + ++K + L + ++ + + K + + E+A+
Sbjct: 546 AKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAL 605
Query: 149 EISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIK----KANESAIAKKDEVIEKLKAE 204
+++L L ++Q K L +N+ V + K + + ++EV++ L
Sbjct: 606 SVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATA 665
Query: 205 LESVEKALREKE 216
++ + + +
Sbjct: 666 YDNFVELVANLK 677
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 44.5 bits (105), Expect = 4e-04
Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 25/213 (11%)
Query: 104 LNEEVSQLKTKENELHSRIEELE---DKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFL 160
+N+ V + K ++L L K L + ++ L
Sbjct: 1901 INQVVLLINEKRDQLEEEQLHLNIGLKK--------------LRDTEAQVKDLQVSLAQK 1946
Query: 161 QEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVE 220
E+ ++ + + + + A++ +V ++ + +V+K + E
Sbjct: 1947 NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006
Query: 221 EWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGK 280
E + ++EE+E+L EL I LE + KEE +
Sbjct: 2007 E--------PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058
Query: 281 LEQDAMVKELKSKVETLEASLKQKEQELEGWTD 313
+ ++K+KV+ A L E W
Sbjct: 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091
Score = 41.0 bits (96), Expect = 0.004
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 14/159 (8%)
Query: 599 QENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELH 658
+ E + L ++K + E +++ L+ + +L+ K++ + K + + Q
Sbjct: 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA-- 1970
Query: 659 AKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSV------DIDTLIK 712
A++ +A Q Q++ + + K K EK E + L
Sbjct: 1971 AEIKQKDARELQVQLDVRNKEI--AVQKVKAYADLEKAEPTGPLREEVEQLENAANELKL 2028
Query: 713 NLQSKKEELCRLLDE----KNTLDNIKVEKENLEIQLDN 747
+ L K + E E ++ +
Sbjct: 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067
Score = 41.0 bits (96), Expect = 0.005
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 25/161 (15%)
Query: 99 EKIRALNEEVS----QLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLT 154
+K+R +V L K EL + E+ KL+Q + D+++ + ++ QL
Sbjct: 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLD 1986
Query: 155 EHNRFLQEEMQSLKDK-LRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALR 213
+E+ K K DL++ +++ E +E+ K +
Sbjct: 1987 V----RNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEI----VATIT 2038
Query: 214 EKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQN 254
E + KEE L+ E +++
Sbjct: 2039 ALEKSIAT------------YKEEYATLIRETEQIKTESSK 2067
Score = 37.6 bits (87), Expect = 0.053
Identities = 34/207 (16%), Positives = 74/207 (35%), Gaps = 21/207 (10%)
Query: 1104 HAALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNAS 1163
+ + + NQ+ L EK++ L++ Q L L+ L+D + +K S
Sbjct: 1889 QNYVTPRHYLDFINQVVLLINEKRDQLEEEQLH------LNIGLKKLRDTEAQVKDLQVS 1942
Query: 1164 LLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNE---------ELARRD 1214
L + L +LK++ ++ + Q + Q +L+ A D
Sbjct: 1943 LAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYAD 2002
Query: 1215 ATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQF 1274
A ++ +EN E E++ A +K++ + + E
Sbjct: 2003 LEKAEPTGPLREEV-EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET--- 2058
Query: 1275 EKEALELRTEDLEYKLQEKEKMIQELN 1301
E ++ + ++ K+ ++ LN
Sbjct: 2059 --EQIKTESSKVKNKVDRSIALLDNLN 2083
Score = 34.5 bits (79), Expect = 0.42
Identities = 44/229 (19%), Positives = 80/229 (34%), Gaps = 23/229 (10%)
Query: 1390 QQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLKTTSETLATKE 1449
+ + +N N ++ L+ L KL+D QV L+ LA K
Sbjct: 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVS-------LAQKN 1947
Query: 1450 RQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQEREVVAQHVAPVETSRERNELA 1509
R+L EQ A +L+++ Q E + A+E +V RN+
Sbjct: 1948 RELDVKNEQ---ANQKLKQMVQ---DQQAAEIKQKDARELQVQLD---------VRNKEI 1992
Query: 1510 LRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLH 1569
+ LR L N LK + + L K+ T ++ +
Sbjct: 1993 AVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDE-IVATITALEKSIATYKEEY 2051
Query: 1570 VKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKL 1618
L E++K+ ++ + RS ++ L S+ +Q E ++
Sbjct: 2052 ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQM 2100
Score = 31.0 bits (70), Expect = 5.3
Identities = 27/210 (12%), Positives = 65/210 (30%), Gaps = 9/210 (4%)
Query: 984 QALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKL 1043
+ + + Q E R L+E + + KL + A + +L + +EL K
Sbjct: 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN 1954
Query: 1044 RSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKIT 1103
++ Q + ++ L+ + E V+ + +
Sbjct: 1955 EQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE 2014
Query: 1104 HAALVEQELGEMKNQMQTLEY---EKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSD 1160
+E E+K + + ++ + +EE ++++ K D
Sbjct: 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK-NKVD 2073
Query: 1161 NASLLL-----EKNTLMETKLTLEAQLKEL 1185
+ LL E+ + Q+ +
Sbjct: 2074 RSIALLDNLNSERGRWEQQSENFNTQMSTV 2103
Score = 30.6 bits (69), Expect = 7.4
Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 50/254 (19%)
Query: 384 LATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKC 443
L + Q ++NEK +L+ + L + LKK L + A+
Sbjct: 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKK---------------------LRDTEAQV 1936
Query: 444 SEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDLNTLREESGLLRQKLS 503
+ + L + L +L + Q ++++ L+ +L
Sbjct: 1937 KDLQV---SLAQKNRELDVKNEQANQKLKQMVQ-------DQQAAEIKQKDARELQVQLD 1986
Query: 504 EQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIE 563
+ I+ K + A + P ++ E + V + + +
Sbjct: 1987 VRNKEIAVQKVKAYAD----LEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEK 2042
Query: 564 NNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQ 623
+ + A L E E++ E + ++K K+++++ L E
Sbjct: 2043 --------SIATYKEEYATLIRETEQIKTESS-------KVKNKVDRSIALLDNLNSERG 2087
Query: 624 QLEEDTSILREQLE 637
+ E+ + Q+
Sbjct: 2088 RWEQQSENFNTQMS 2101
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.5 bits (99), Expect = 5e-04
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 268 RVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQK-EQELEGWTDNDNWGSSGNEQDI 326
R+ +E E+ + EQ ++EL + + +E ++K +++LE W +EQ +
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ------SEQ-V 131
Query: 327 EALKKENEEIKEKLAKQES 345
E K N + +Q
Sbjct: 132 EKNKINNRIADKAFYQQPD 150
Score = 34.7 bits (79), Expect = 0.17
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 99 EKIRALNEE-VSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHN 157
E IR EE +L+ + +E +K ++ +++ Q + + +E ++ +N
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW----NQRQSEQVEKNK--INN 138
Query: 158 RFLQEEMQSLKDKLRDLDENV 178
R + + D ++
Sbjct: 139 RIADKAF------YQQPDADI 153
Score = 34.0 bits (77), Expect = 0.24
Identities = 12/75 (16%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDND 382
Q+ E+++K EE +++L + ++ ++ Q+ + + +LEEW ++
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVME------QEWREKAKKDLEEW-----NQRQSE 129
Query: 383 KLATLQQENKVLNEK 397
++ + N++ ++
Sbjct: 130 QVEKNKINNRIADKA 144
Score = 33.6 bits (76), Expect = 0.31
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 1233 ENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKY-----QFEKEALELRTEDLE 1287
E+I K ++ + + A QE + +K L E Q EK + R D
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 1288 YKLQEKEKMI 1297
+ Q +I
Sbjct: 145 FYQQPDADII 154
Score = 31.3 bits (70), Expect = 2.1
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 161 QEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKA-LREKESEV 219
Q + D + E E KK E ++ E +EK K +KA ++ ++++
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 30.1 bits (67), Expect = 5.0
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 585 AEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEI-----QQLEEDTSILREQLESK 639
A+ +RL +E + + E +K+L++ K +E+E + LEE EQ+E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 640 DQVDDSIEKTLRNEIQE 656
+ +K +
Sbjct: 135 KINNRIADKAFYQQPDA 151
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 41.5 bits (97), Expect = 0.002
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 380 DNDKLATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNL 439
D E VL ELQT LL E+ +K DL+D +
Sbjct: 66 DAGGCKHPLDELGVLCPTGCELQTTLLKQEKTVKPVLRDLKD-------------RVAKF 112
Query: 440 RAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSSDL--NTLREESGL 497
+ + + + ++ ++ D + LSE+ E D N + +
Sbjct: 113 SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV 172
Query: 498 LRQKLSEQKVIISKLKTQLEAAQQGTSSHS 527
LR + I KL+ + S
Sbjct: 173 LRAVIDSLHKKIQKLENAIATQTDYCRSPC 202
Score = 35.4 bits (81), Expect = 0.17
Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 1282 RTEDLEYKLQEKEKMIQE-LNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNE 1340
+L+ L ++EK ++ L ++K + Q + + Q +
Sbjct: 83 TGCELQTTLLKQEKTVKPVLRDLKDRV------AKFSDTSTTMYQYVNMIDNKLVKTQKQ 136
Query: 1341 VLRSATEIDNMKETITYLEQYNLQLSKSQESSTTLTLLQSELAEQRTLNQQLVQIVNTK 1399
+ + + Y ++ + ++L +L++ + Q+L + T+
Sbjct: 137 RKDNDIILSEYNTEMELHYNY-IKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQ 194
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 40.4 bits (95), Expect = 0.005
Identities = 31/180 (17%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 130 QQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANES 189
QQ++ +K +S + + +E + + Q ++S+K + L E ++ + A +
Sbjct: 40 QQEVIADKQMSVKEDLDKVEPAVIEA-----QNAVKSIKKQH--LVEVRSMANPPAAVKL 92
Query: 190 AIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELI 249
A+ ++ + + + + + +E+ + N A SD ++E+++K +
Sbjct: 93 ALESIALLLGESTTDWKQIRSIIM-RENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYN 151
Query: 250 EVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELE 309
I N +L A + + V+ L+++++ LE K +Q+LE
Sbjct: 152 YEIVNRASLAAGPMVKWAIAQLNYADML-------KRVEPLRNELQKLEDDAKDNQQKLE 204
Score = 32.3 bits (74), Expect = 1.6
Identities = 26/248 (10%), Positives = 83/248 (33%), Gaps = 51/248 (20%)
Query: 384 LATLQQENKVLNEKVSELQTQL-----LSVEEALKKKENDLEDWGEGDDWGTGNSTELNN 438
L L+QE +V + + E L L+V+E L K++ + D + +
Sbjct: 4 LKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIAD-------------KQMS 50
Query: 439 LRAKCSEFEKTIVELKSQEELLKQALIDKENELSEWGQTNEWGSPSSS-DLNTLREESGL 497
++ + E ++E ++ + +K+ + + ++ + S + L +
Sbjct: 51 VKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQ 110
Query: 498 LRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQ 557
+R + ++ S+ + + +++ + S E +
Sbjct: 111 IRSII---------MRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRA--- 158
Query: 558 LGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKG 617
+ + + + + + + L+ +L++ + K
Sbjct: 159 ----------------SLAAGPMVKWAIAQLNYAD----MLKRVEPLRNELQKLEDDAKD 198
Query: 618 LEEEIQQL 625
+++++ L
Sbjct: 199 NQQKLEAL 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.008
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 30/58 (51%)
Query: 1711 EKVNQLMEELNKKEAKLKEVNNGGKVDKCLVTNMIVNFLTAP-SRPSRHQALQILASV 1767
EK + L K +A LK L A S P AL I A++
Sbjct: 18 EK-----QALKKLQASLK--------------------LYADDSAP----ALAIKATM 46
Score = 36.9 bits (84), Expect = 0.020
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 41/69 (59%)
Query: 1167 EKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIATLNTTGAP 1226
EK L + L+A LK +Y D D+ AP
Sbjct: 18 EKQALKK----LQASLK--------------LYAD------------DS---------AP 38
Query: 1227 DL--NASIE 1233
L A++E
Sbjct: 39 ALAIKATME 47
Score = 33.4 bits (75), Expect = 0.27
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 1008 KQRVQELDAKL---AEEIASKTSIIQTLE 1033
KQ +++L A L A++ A +I T+E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 31.8 bits (71), Expect = 1.1
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 30/56 (53%)
Query: 244 EKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKL-EQD---AMVKELKSKVE 295
EKQ + KL+A L KL D A+ +K+ +E
Sbjct: 18 EKQA-----------LKKLQASL-------------KLYADDSAPALA--IKATME 47
Score = 31.1 bits (69), Expect = 1.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1144 KNELQSLQDAFSVMKSDNASLLLEKNTLME 1173
K L+ LQ + + D+A L K T ME
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT-ME 47
Score = 30.7 bits (68), Expect = 2.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 647 EKTLRNEIQELHA--KLI---NVEALVNQAQVE 674
EK +++L A KL + AL +A +E
Sbjct: 18 EK---QALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 5.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 291 KSKVETLEASLK 302
K ++ L+ASLK
Sbjct: 19 KQALKKLQASLK 30
Score = 29.1 bits (64), Expect = 9.1
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 20/42 (47%)
Query: 1035 QVKELQDKLRSYTHVENELGQYRSKVYELEQ-----IQARLE 1071
+K+LQ L K+Y + I+A +E
Sbjct: 21 ALKKLQASL---------------KLYADDSAPALAIKATME 47
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 40.1 bits (93), Expect = 0.009
Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 27/163 (16%)
Query: 603 ELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQL----ESKDQVDDSIEKTLRNEIQELH 658
++ +E Q L+EE QL D +L + + +++ + ++++ ++N +Q H
Sbjct: 916 YMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFH 975
Query: 659 AKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKK 718
+ K+ D ++ ++ K G D + +++Q+
Sbjct: 976 LE-------------AKKPTDLLPSDIINGLNELIAKLTIFRGSDR-----ITRDVQNNA 1017
Query: 719 EELCRLLDEK-----NTLDNIKVEKENLEIQLDNLNTNYQDKI 756
L ++L + ++ K E + + +Q +
Sbjct: 1018 TLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAV 1060
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 38.7 bits (90), Expect = 0.016
Identities = 12/110 (10%), Positives = 41/110 (37%), Gaps = 7/110 (6%)
Query: 530 VDQQVQDRESRIEMLSRENEGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKER 589
VD+ +Q E + + + ++ ++ + L + + + ++ + + ++ E +
Sbjct: 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMK 95
Query: 590 LDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESK 639
+ + L++ ++I L+E + L Q +
Sbjct: 96 YEASILTHDSSIRYLQEIYNS-------NNQKIVNLKEKVAQLEAQCQEP 138
Score = 38.3 bits (89), Expect = 0.021
Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 757 NTLIQSKNDLEAKISELNNAQH---NKNNEINDLNKRISLFEENNAFLQRSILDLERNLD 813
+ L + ++ + L + H NK +E+ L K I + + S ++
Sbjct: 27 DFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAI---QLTYNPDESSKPNMIDAAT 83
Query: 814 EKLKEFNEKEISYNENIEASNHKIQQLTQETDTLKAEL 851
K ++ E+ + Y +I + I+ L + ++ ++
Sbjct: 84 LKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKI 121
Score = 36.4 bits (84), Expect = 0.088
Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 20/124 (16%)
Query: 1276 KEALELRTEDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRE-LQLMN 1334
+ L ++ LQ E ++ ++ ++ ++ ++
Sbjct: 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEV-------------KQLIKAIQLTYNPDE 72
Query: 1335 ESLQNEVLRSATEIDNMKETITYLEQYNLQLSKSQESSTTLTLLQSELAEQRTLNQQLVQ 1394
S N + + + M E I E L +++ LQ L +
Sbjct: 73 SSKPNMIDAATLKSRKMLEEIMKYEASILTHD------SSIRYLQEIYNSNNQKIVNLKE 126
Query: 1395 IVNT 1398
V
Sbjct: 127 KVAQ 130
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 38.7 bits (89), Expect = 0.019
Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 18/191 (9%)
Query: 722 CR---LLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQH 778
CR L+DE + ++ K L L N N +D + ++ NN +
Sbjct: 52 CRMKGLIDEVDQDFTSRINK--LRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDN 109
Query: 779 NKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENIEA------ 832
DL RI + + I L++N+ ++L + E+ + I +
Sbjct: 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCS 169
Query: 833 --SNHKI-----QQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLK 885
HK+ + ++ + + A + + Q + + PV + Q+
Sbjct: 170 RALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAP 229
Query: 886 QNLESVKQENT 896
+++ +
Sbjct: 230 LEWKALLEMQQ 240
Score = 31.4 bits (70), Expect = 2.9
Identities = 34/197 (17%), Positives = 82/197 (41%), Gaps = 12/197 (6%)
Query: 920 LSIIMEKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQM 979
+I E + + + +L +L + L KN + + + + KQ+
Sbjct: 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQI 114
Query: 980 NEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKEL 1039
NE+L++ E L+ RK+ E QR+ L + +++ + ++I+++
Sbjct: 115 NEDLRSRIEILR---------RKV-IEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSC 164
Query: 1040 QDKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYN 1099
+ + +L Y+++ +LEQ+ A + +K +T++ + +
Sbjct: 165 KGSCSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPR--EFK 222
Query: 1100 AKITHAALVEQELGEMK 1116
+++ A L + L EM+
Sbjct: 223 SQLQEAPLEWKALLEMQ 239
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 38.7 bits (90), Expect = 0.024
Identities = 46/341 (13%), Positives = 105/341 (30%), Gaps = 31/341 (9%)
Query: 559 GLVIENNYVQESDPMNNSL-----DNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVE 613
G ++ + +++ NT + EK + E K+ V
Sbjct: 700 GNIV--TFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVS 757
Query: 614 KQKGLEEEIQQLEEDT------SILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEAL 667
+ + + +E + + E L +++ + + E ++ L ++
Sbjct: 758 ELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDE---FATLKALQQIDLSDPVA 814
Query: 668 VNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDE 727
V + + E D K+ EL+ K ++ + D + +++K+E
Sbjct: 815 VEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKE-----KS 869
Query: 728 KNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDL 787
D++ E + L+ Q NL D I LI N E+
Sbjct: 870 TTDWDDVVFEVDLLKSQEINL-----DYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGN 924
Query: 788 NKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENIEASNHKIQQLTQETDTL 847
+ L + L + ++ + F ++E + I++ D
Sbjct: 925 RAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQ-----QREAEALIKEENLNEDAA 979
Query: 848 KAELVAQAESTQLVKQEQALLAAAPVDDNIVIENQQLKQNL 888
K + + + L P + + + KQ +
Sbjct: 980 KRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAV 1020
Score = 36.1 bits (83), Expect = 0.16
Identities = 34/231 (14%), Positives = 79/231 (34%), Gaps = 18/231 (7%)
Query: 88 FELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKA 147
F + ++ + E+ ++E + ++ + +KI D +S + +
Sbjct: 798 FATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQ 857
Query: 148 IEISQLTEHNRFLQE------EMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKL 201
+ + + + E+ LK + +LD + I + N K E+IE++
Sbjct: 858 RREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDY--ILGLIFEHNRQNKGKG-EMIEEV 914
Query: 202 KAELESVEKALREKESEVEEW--GNNDAWGASDDVKEELEKLVVEKQ--ELIEVIQNHET 257
K + S ++ V+ N D + + +Q E +I+
Sbjct: 915 KRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENL 974
Query: 258 LIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQEL 308
+ + + + A +G + E K+ L K K+Q +
Sbjct: 975 NEDAAKRYIRTSLKREYATENGT-----ELNETLPKLSPLNPQYKTKKQAV 1020
Score = 33.7 bits (77), Expect = 0.81
Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 17/134 (12%)
Query: 88 FELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSV-----SYQ 142
FE + E I + + + ++ ++ + D+ S+ ++
Sbjct: 898 FEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFA 957
Query: 143 LEEKAIEISQLTEHNRFLQEEMQ----------SLKDKLRDLDENVTVEDIKKANESAIA 192
E+ E L + ++ + + +L+E T+ + N
Sbjct: 958 QREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNE--TLPKLSPLNPQYKT 1015
Query: 193 KKDEVIEKLKAELE 206
KK V +K+ + +E
Sbjct: 1016 KKQAVFQKIVSFIE 1029
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 37.5 bits (87), Expect = 0.032
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 1670 ELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKE 1729
++ + I + + S+ L + N +Q I L EKV QL + + +
Sbjct: 1 KMLEEIMKYEASILTHDSSIR---YLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQ 57
Query: 1730 VNN 1732
+++
Sbjct: 58 IHD 60
Score = 30.9 bits (70), Expect = 3.9
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEK 648
++ EE+ + + E ++I L+E + L Q + + I
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
Query: 649 T 649
Sbjct: 61 I 61
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase,
phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Length = 1354
Score = 37.9 bits (87), Expect = 0.039
Identities = 31/276 (11%), Positives = 79/276 (28%), Gaps = 32/276 (11%)
Query: 99 EKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNR 158
+ K + D + + + + +
Sbjct: 1042 GSTATAAAVTTANGAKPKAPATPQAATSVTNPAAGDGISVQNDPPVDSSGSPASPKKGKA 1101
Query: 159 FLQEEMQSLKD-------KLRDLDENVTVEDIKKANESAIAKKDEVIEKL-----KAELE 206
+ +S +D K D+ A+ + +I+ + K++L
Sbjct: 1102 NADDYAESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLP 1161
Query: 207 SVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVI-----QNHETLIAK 261
++ + V+ LE++V ++I+ ++ L
Sbjct: 1162 LTFVNAQKTSPPEAGESADKQKEDQKKVRSALERIVKLADKVIQETDSEALLSYYGLKND 1221
Query: 262 LEADLTRVKEEKEAE-------VSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDN 314
AD ++K + + +S K A + L ++ A + + E+ + D
Sbjct: 1222 TRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDA 1281
Query: 315 DN--------WGSSGNEQDIEALKKENEEIKEKLAK 342
++ W + + K + I+EK +
Sbjct: 1282 NDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTR 1317
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 37.8 bits (87), Expect = 0.042
Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 26/175 (14%)
Query: 590 LDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQL---ESKDQVDDSI 646
L L +E ++ ++ Q L+EE +QL +D LRE E+ + +I
Sbjct: 901 LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI 960
Query: 647 EKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVD 706
+ ++N Q H + D +++ + + E GK+
Sbjct: 961 RRIIQNAQQTFHID-------------HTKPSDLTIKDIVLGVKDLQENLLVLRGKNE-- 1005
Query: 707 IDTLIKNLQSKKEELCRLLDE-----KNTLDNIKVEKENLEIQLDNLNTNYQDKI 756
+I+N Q L L + L ++ K+ + L N+ + +
Sbjct: 1006 ---IIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSV 1057
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 36.7 bits (85), Expect = 0.054
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 95 EDYNEKIRALNEEVSQLKTKENELHSRIEELEDKL---QQKIDDEKSVSYQLEEKAIEIS 151
+ + ++ + EEV L+ ++I+EL + QQ + + + +
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC 60
Query: 152 QLTEHNRFLQEEMQSLKD 169
Q T N+ + +
Sbjct: 61 QDTTANKISPITGKDCQQ 78
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding,
SH2 domain, transcription REGU signaling protein; 3.21A
{Mus musculus}
Length = 585
Score = 37.1 bits (85), Expect = 0.069
Identities = 24/143 (16%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
Query: 1602 SQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEF---LQ 1658
V +++++ ++ ++ + + Q + L LQ E F + + +F Q
Sbjct: 5 VLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQ 64
Query: 1659 GELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLM- 1717
++ L Q +L+ LQ ++L + + +T+Q L ++ ++
Sbjct: 65 LNPQERMSRETALQQKQVSLETWLQREAQTLQQ--YRVELAEKHQKTLQLLRKQQTIILD 122
Query: 1718 EELNKKEAKLKEVNNGGKVDKCL 1740
+EL + + + + NGG + L
Sbjct: 123 DELIQWKRRQQLAGNGGPPEGSL 145
Score = 35.2 bits (80), Expect = 0.21
Identities = 25/161 (15%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 593 EVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRN 652
V +SQ+++++ ++ E+ + E E+++L++ Q + ++ + +
Sbjct: 6 LVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQL 65
Query: 653 EIQELHAKLINV----EALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDID 708
QE ++ + +L Q E Q L EL EK+++ + Q ++ +D
Sbjct: 66 NPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQ---TIILD 122
Query: 709 TLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLN 749
+ + +++ + +LD ++ E L +
Sbjct: 123 DELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNR 163
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle; HET:
ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Length = 430
Score = 36.2 bits (84), Expect = 0.10
Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 11/142 (7%)
Query: 880 ENQQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIELES 939
EN +K V Q + ++ + AQ E++ E+S ++ K+YE+ ++E
Sbjct: 138 ENILIKAKNFLVFQGD------VEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEK 191
Query: 940 TLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEE 999
+ + ++ ++ + V + + +N E+
Sbjct: 192 LSKSATESIKNRRRI-HGELKTYKSPGLEVLFQGPRG----SRYDEAEGRFEVINNETEQ 246
Query: 1000 DRKILDEYKQRVQELDAKLAEE 1021
+ + + ++ K E
Sbjct: 247 LKAEEKKILNQFLKIKKKRKEL 268
Score = 33.5 bits (77), Expect = 0.67
Identities = 27/227 (11%), Positives = 76/227 (33%), Gaps = 28/227 (12%)
Query: 554 RVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKL----- 608
R L +I + + + + + A + + ++ +EL + +
Sbjct: 58 RSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKL-VELMRIISRNGD 116
Query: 609 -EQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEAL 667
++ + ++ E+ +IL + + +++++ A+ +
Sbjct: 117 TSYKIDGKTVSYKDYSIFLENENILIKAKNF---------LVFQGDVEQIAAQSPVELSR 167
Query: 668 VNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEELCRLLDE 727
+ + +YEELKEK E++S+ K+ I +K +S E+
Sbjct: 168 MFEEVSGSIQYKKEYEELKEKIEKLSKSATESI-KNRRRIHGELKTYKSPGLEVLFQGPR 226
Query: 728 KNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELN 774
+ D + E + + + L + + + ++
Sbjct: 227 GSRYDEAEGRFEVINNETEQ-----------LKAEEKKILNQFLKIK 262
Score = 32.0 bits (73), Expect = 2.2
Identities = 13/149 (8%), Positives = 43/149 (28%), Gaps = 10/149 (6%)
Query: 1160 DNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIAT 1219
D + L +N L++ K L Q ++ ++E+ + + +
Sbjct: 130 DYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKI 189
Query: 1220 LNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEAL 1279
+ + + + + T + + +++
Sbjct: 190 EKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRY-----DEAEGRFEVINNET 244
Query: 1280 ELRTEDLEYKLQEKEKMIQELN-EMKQSF 1307
E L+ + ++ ++ + K+ F
Sbjct: 245 E----QLKAEEKKILNQFLKIKKKRKELF 269
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 35.9 bits (84), Expect = 0.11
Identities = 16/85 (18%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 141 YQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDI---KKANESAIAKKDEV 197
+L ++ +L + R + + +++L+ + N ++I K+ + ++ V
Sbjct: 23 KELVSLVDKVLELDKRRREIIKRLEALRSE-----RNKLSKEIGKLKREGKDTTEIQNRV 77
Query: 198 IEKLKAELESVEKALREKESEVEEW 222
++LK E++ +E+ LR+ E E++
Sbjct: 78 -KELKEEIDRLEEELRKVEEELKNT 101
Score = 31.7 bits (73), Expect = 2.7
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 259 IAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWG 318
++ L +E + V LE D +E+ ++E L + + +E+ G
Sbjct: 11 PDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEI---------G 61
Query: 319 SS-GNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLE 363
+D ++ +E+KE++ + E L K++ E L+ LL
Sbjct: 62 KLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE---EELKNTLLW 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 36.4 bits (83), Expect = 0.11
Identities = 34/202 (16%), Positives = 82/202 (40%), Gaps = 13/202 (6%)
Query: 923 IMEKCKQ-YEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNE 981
++++ Q + ++ +L+++L + L N M L S + + +++E
Sbjct: 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSE 113
Query: 982 ELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQD 1041
+L++ E LK RK++++ Q +Q L + ++ + ++I+++ +
Sbjct: 114 DLRSRIEVLK---------RKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163
Query: 1042 KLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAK 1101
E +L Y + +LEQ+ A+ H +K + DL + ++
Sbjct: 164 SCSRALAREVDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLIKMKPVPDLVP--GNFKSQ 221
Query: 1102 ITHAALVEQELGEMKNQMQTLE 1123
+ + L +M LE
Sbjct: 222 LQKVPPEWKALTDMPQMRMELE 243
Score = 33.3 bits (75), Expect = 0.93
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 722 CR---LLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQH 778
CR L+DE N ++ K L+ L N +D + L S NN +
Sbjct: 49 CRMKGLIDEVNQDFTNRINK--LKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN 106
Query: 779 NKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISYNENIEASNHKIQ 838
N DL RI L+R + EK++ +N+ A ++
Sbjct: 107 TYNRVSEDLRSRIE--------------VLKRKVIEKVQHIQ----LLQKNVRAQLVDMK 148
Query: 839 QLTQETD 845
+L + D
Sbjct: 149 RLEVDID 155
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 36.1 bits (84), Expect = 0.12
Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 198 IEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHET 257
+E L A E +AL ++ E+ + ++ +EL +L + + L E + T
Sbjct: 43 MESLCAYPEDAARALDLRKGELRSK-DLPGIISTW---QELRQLREQIRSL-EEEKEAVT 97
Query: 258 -LIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELE 309
+ L + + +++ + + +E++ ++ L Q E++
Sbjct: 98 EAVRALVVNQDNSQVQQDPQYQSLRAR---GREIRKQLTLLYPKEAQLEEQFY 147
Score = 29.9 bits (68), Expect = 8.5
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 35/140 (25%)
Query: 325 DIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKL 384
D+E+L E+ L + + D +
Sbjct: 42 DMESLCAYPEDAARALDLR-----------------------------KGELRSKDLPGI 72
Query: 385 ATLQQENKVLNEKVSELQTQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCS 444
+ QE + L E++ L+ + +V EA++ D+ + +LRA+
Sbjct: 73 ISTWQELRQLREQIRSLEEEKEAVTEAVRALV------VNQDNSQVQQDPQYQSLRARGR 126
Query: 445 EFEKTIVELKSQEELLKQAL 464
E K + L +E L++
Sbjct: 127 EIRKQLTLLYPKEAQLEEQF 146
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 35.9 bits (82), Expect = 0.17
Identities = 30/193 (15%), Positives = 66/193 (34%)
Query: 121 RIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTV 180
+E ++ + + + ++ ++ + E + E R QE L+ +
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701
Query: 181 EDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEK 240
+ A++ E KAE ES +A R + A + + + ELE+
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761
Query: 241 LVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEAS 300
+ ++ + + L L V+ +K E++ L + + E
Sbjct: 762 VKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
Query: 301 LKQKEQELEGWTD 313
L+ + TD
Sbjct: 822 LQSLGLKSTLITD 834
Score = 34.4 bits (78), Expect = 0.40
Identities = 41/290 (14%), Positives = 95/290 (32%), Gaps = 44/290 (15%)
Query: 80 TTSTVRNGFELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSV 139
S VR + + + R + V + E+ + + Q V
Sbjct: 575 IASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLV 634
Query: 140 SYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIE 199
++ +++E + + R + L +E + E+A + + +E
Sbjct: 635 VSSVDVQSVE--PVDQRTRDALQRSVQL-----------AIEITTNSQEAAAKHEAQRLE 681
Query: 200 KLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLI 259
+ +K L + E+E K E L +E + +
Sbjct: 682 QEARGRLERQKILDQSEAE----------------KARKELLELEAMSMAVESTGNAKAE 725
Query: 260 AKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGS 319
A+ A+ R++ E KL+ A+ E ++++E ++ K +E EL
Sbjct: 726 AESRAEAARIEGEGSVL-QAKLKAQALAIETEAELERVK---KVREMELI---------- 771
Query: 320 SGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELE 369
+E + +++ AK+ + + + EM+++
Sbjct: 772 -YARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 35.3 bits (80), Expect = 0.21
Identities = 26/192 (13%), Positives = 73/192 (38%), Gaps = 8/192 (4%)
Query: 179 TVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEEL 238
+++ + +++ + + ++I +L+ +L ++ A E E E ++E
Sbjct: 346 QMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE-----LQAMMQRLEETK 400
Query: 239 EKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLE 298
E+Q+L + I+ + +++++ ++ E + E + ++ L
Sbjct: 401 NMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETR---RLQEEVEDARRKQDEAAAALL 457
Query: 299 ASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQ 358
A+ + + D D + ++ E+ + + L + L +E L
Sbjct: 458 AATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLH 517
Query: 359 KQLLEKEMELEE 370
QL + +L
Sbjct: 518 NQLKALKQDLAR 529
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 34.8 bits (81), Expect = 0.32
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 585 AEKERLDEEVTVLSQENIELKKKLEQA-VEKQKGLEEEIQQLEEDTSILREQLESKDQVD 643
E + L+ + L E LKK+ + E+ K +E EI +L E+ + LR + E
Sbjct: 401 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWER----- 455
Query: 644 DSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALD---------GKYEELKEKYEQMSE 694
E+ + +++E +L + + + ++ ++ D G+ +L+ + E +SE
Sbjct: 456 ---EREILRKLREAQHRL---DEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSE 509
Query: 695 KFENQTG-KDSVDID---------TLI---KNLQSKKEELCRLLDE 727
K + V + T I K L+ ++E+L RL +E
Sbjct: 510 KLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEE 555
Score = 32.9 bits (76), Expect = 1.1
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 29/120 (24%)
Query: 181 EDIKKANESAIAKKDEVIEKLKAELESVEKALREK-ESEVEEWGNNDAWGASDDVKEELE 239
E +KK + ++ + IE A+L LR + E E + + + L+
Sbjct: 418 EALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERE------REILRKLREAQHRLD 471
Query: 240 KLVVEKQELIEVIQNHETLIAKLEADLTRVKE---------EKE-AEVSGKLEQDAMVKE 289
++ E + A+ + DL R E E E +S KL V+
Sbjct: 472 EVRREIEL------------AERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRL 519
Score = 31.0 bits (71), Expect = 4.9
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 1635 LQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELT----------QLISTLQHQLQE 1684
L+I E + EKD + + L+ ++ E+ + +L + + QH+L E
Sbjct: 413 LEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDE 472
Query: 1685 ARESLSAAGRLSDQLNQKSQTIQELT-EKVNQLMEELNKKEAKLKE 1729
R + A R D LN+ + EL ++ +L E+ KL+
Sbjct: 473 VRREIELAERQYD-LNRAA----ELRYGELPKLEAEVEALSEKLRG 513
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 34.5 bits (80), Expect = 0.33
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 598 SQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQEL 657
+ + LK+K+ EK L+E+I+ E L E L ++++ +TL NE+QEL
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK----EETVRRTLHNELQEL 57
Score = 29.9 bits (68), Expect = 7.9
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 980 NEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEE 1021
++ AL E + ++ + + + ++EL+ L +E
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 34.5 bits (80), Expect = 0.38
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 149 EISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDI---KKANESAIAKKDEVIEKLKAEL 205
EI +L R +E+ L+ + N +I +K E + ++ +
Sbjct: 32 EILKLDTEWRTKLKEINRLRHE-----RNKIAVEIGKRRKKGEPVDELLAKS-REIVKRI 85
Query: 206 ESVEKALREKESEVEEW 222
+E + E + +++ +
Sbjct: 86 GELENEVEELKKKIDYY 102
Score = 32.6 bits (75), Expect = 1.3
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 253 QNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWT 312
+N E + L R + EK V L+ D + ++ L + E
Sbjct: 9 ENPELVKNDLI---KRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE----- 60
Query: 313 DNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEW 371
I +K+ E + E LAK ++ L+ ++ E + +++ +
Sbjct: 61 -------------IGKRRKKGEPVDELLAK----SREIVKRIGELENEVEELKKKIDYY 102
Score = 31.0 bits (71), Expect = 4.6
Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 198 IEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVK---EELEKLVVEKQELIEVIQN 254
I+ ++ E V+ L ++ G + D++ E + E L ++
Sbjct: 4 IKLIRENPELVKNDLIKR-------GELEKVKWVDEILKLDTEWRTKLKEINRL----RH 52
Query: 255 HETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELE 309
IA + E + + A +E+ ++ LE +++ +++++
Sbjct: 53 ERNKIAVEIGKRRKKGEPVDELL-------AKSREIVKRIGELENEVEELKKKID 100
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 34.6 bits (79), Expect = 0.43
Identities = 27/187 (14%), Positives = 67/187 (35%), Gaps = 31/187 (16%)
Query: 160 LQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKA----ELESVEKALREK 215
LQ E++ +++ + + +++ N ++ +I++L+ K
Sbjct: 596 LQWEVEKYSFQVKFIKM-IIEKELTVTN----KPRNAIIQELENLGFPRFNKEGKPYYGS 650
Query: 216 ESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEA 275
++ ND GA+ D ++E + + + + T L + + +E
Sbjct: 651 PNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKE--- 707
Query: 276 EVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEE 335
++K+ + K LE L + D W D++A + +E
Sbjct: 708 ------RYQKLLKQKQEKETELE--------NLLKLSAKDIW-----NTDLKAFEVGYQE 748
Query: 336 IKEKLAK 342
++ A+
Sbjct: 749 FLQRDAE 755
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 34.3 bits (79), Expect = 0.44
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 593 EVTVLSQENIELKKKLEQAVEKQ-----KGLEEEIQQLEEDTSI-LREQLESKDQVDDSI 646
+V V +++ +E K+ + E Q K L EE+Q LE +R L + + +
Sbjct: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989
Query: 647 EKTLRNEIQEL----HAKLINVEALVNQAQVEKQALDGKYEELKEKYEQ 691
+K R+ EL K +E L Q K + K E + K Q
Sbjct: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 33.4 bits (75), Expect = 0.76
Identities = 43/261 (16%), Positives = 95/261 (36%), Gaps = 19/261 (7%)
Query: 111 LKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDK 170
+ E ++ +++ + LQ+ +D + + E I S + F +E L+ K
Sbjct: 332 IAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKK 391
Query: 171 LRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGA 230
D + + + + E++KA + S R ++++
Sbjct: 392 RDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEP 451
Query: 231 SDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKEL 290
++ E Q ++ ++ I + + LT ++E E E A K L
Sbjct: 452 RKGIQAEEIL-----QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKML 506
Query: 291 KSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQESTLA-K 349
E ++QKE+ + E + +K + + L +QE TLA K
Sbjct: 507 HEMQRKNEQMMEQKERSYQ-------------EHLKQLTEKMENDRVQLLKEQERTLALK 553
Query: 350 LKTHSESLQKQLLEKEMELEE 370
L+ + L++ ++ ++
Sbjct: 554 LQEQEQLLKEGFQKESRIMKN 574
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 32.8 bits (75), Expect = 0.82
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 597 LSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDD 644
EN LK++LE+ LE E+ L+++ L+E L+ D + D
Sbjct: 24 TYTENQHLKERLEE----LAQLESEVADLKKENKDLKESLDITDSIRD 67
Score = 31.3 bits (71), Expect = 2.4
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 1497 APVETSRERNELALRLQNLQEEKTMLLTEINDLRLNQN---TLYNENERLKQHLLKTEED 1553
P + + L+N E L + +L ++ L EN+ LK+ L T+
Sbjct: 6 KPTSFISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSI 65
Query: 1554 NTSELVKAE 1562
+ + A
Sbjct: 66 RDYDPLNAS 74
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 33.1 bits (75), Expect = 0.89
Identities = 36/267 (13%), Positives = 98/267 (36%), Gaps = 22/267 (8%)
Query: 106 EEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQ 165
V Q +H+ I + +L + D + S + + E L + + + ++
Sbjct: 35 ASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEE-EYENLLKASFERMDHLR 93
Query: 166 SLKDKLRDLDENVTVEDIKKANESA--IAKKDEVIEKLKAELESVEKALREKESEVEEWG 223
L++ ++ + + + E + K+ I + + L KE E+
Sbjct: 94 QLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKEL---- 149
Query: 224 NNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQ 283
+ +K+E ++LV+ + + I+ + + + + ++ + + L++
Sbjct: 150 --------NKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDV----HLKE 197
Query: 284 DAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALKKENEEIKEKLAKQ 343
+A + + ++ EA LK + + + Q + KE E+ +EK+ +
Sbjct: 198 NAAYFQFFEEAQSTEAYLKGLQDSIR---KKYPCDKNMPLQHLLEQIKELEKEREKILEY 254
Query: 344 ESTLAKLKTHSESLQKQLLEKEMELEE 370
+ + L S+ + +
Sbjct: 255 KRQVQNLVNKSKKIVQLKPRNPDYRSN 281
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 33.3 bits (77), Expect = 0.92
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 572 PMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKL----------EQAVEKQKGLEEE 621
P+ LD + + R ++ + L ++KL ++ VE ++
Sbjct: 791 PLEGLLD----VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEE---AR 843
Query: 622 IQQLEEDTSILREQLES 638
+++ E +RE L
Sbjct: 844 LKENLEQAERIREALSQ 860
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 31.3 bits (72), Expect = 0.94
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 1090 DLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQ--EESIA-------- 1139
+LQ + + + + E+ EM +Q L E + KQ + +IA
Sbjct: 19 ELQQTAGRHGDDLRNT---KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75
Query: 1140 -SNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLE 1179
+N+L L++A K D A LL E LM TKL L+
Sbjct: 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALD 116
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.8 bits (74), Expect = 1.0
Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 568 QESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAV-EKQKGLEEEIQQLE 626
+++DP + A++ E L ++ E+++ Q V EK+ L+E ++L
Sbjct: 309 KDTDPDSKPFSLQETYEAKRNEFLGE---LQKKEEEMRQMFVQRVKEKEAELKEAEKELH 365
Query: 627 EDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGK 681
E L++ + + + + +K+L +E+ + E L +Q + K
Sbjct: 366 EKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLK 420
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 32.5 bits (73), Expect = 1.3
Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 89 ELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEK-A 147
+ +E+ +K+ L + ++ +++ K+Q+++ + + LE+K A
Sbjct: 6 LIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLEQKLA 65
Query: 148 IEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKA 186
E F + + L + K+
Sbjct: 66 SGAENPGEKKSFSERAAEELIKSWDGKQGTFGAKTFNKS 104
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 32.6 bits (75), Expect = 1.4
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 597 LSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQE 656
+ + L ++ ++ + L +Q + +EQL + K L N + +
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL----FQSNMERKELHNTVMD 56
Query: 657 L 657
L
Sbjct: 57 L 57
Score = 31.8 bits (73), Expect = 2.0
Identities = 9/62 (14%), Positives = 26/62 (41%)
Query: 111 LKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDK 170
+ + L + + L + ++ + + + +LE ++ Q + L + L+D
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60
Query: 171 LR 172
+R
Sbjct: 61 IR 62
Score = 30.3 bits (69), Expect = 6.9
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 323 EQDIEALKKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEME 367
AL E ++++ + + E+ ++QL + ME
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNME 46
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, MU binding protein;
HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3
d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A*
3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A*
3d6y_A* 1bow_A 2bow_A*
Length = 278
Score = 32.1 bits (73), Expect = 1.6
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 590 LDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK 648
L+E E EL E+++ + E++ L L + + K ++ +E
Sbjct: 66 LEEMKKAQDLEMEELFAFYT---EQERQIREKLDFLSA----LEQTISLVKKRMKRQMEY 118
Query: 649 TLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTG 701
E+ L + I + + + L+ Y +LK+ E N G
Sbjct: 119 PALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNNSYG 171
Score = 29.7 bits (67), Expect = 9.5
Identities = 11/102 (10%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 620 EEIQQ-LEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQAL 678
EE+++ + + L + E+ +R ++ L A + + + + + +
Sbjct: 67 EEMKKAQDLEMEELFAFYTEQ-------ERQIREKLDFLSALEQTISLVKKRMKRQMEYP 119
Query: 679 DGKYEELKEKYEQMSEKFENQTGKDSVDIDTLIKNLQSKKEE 720
+ ++ E + E + ++ L+ E
Sbjct: 120 ALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIES 161
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus,
cell MEMB disulfide bond, endocytosis, HOST-virus inter
receptor, secreted, transmembrane; HET: NAG FUC BMA MAN;
2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A*
3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Length = 640
Score = 32.1 bits (72), Expect = 1.9
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 748 LNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILD 807
LN +Y+ + L+ DL +++ + + L F + L +
Sbjct: 487 LNLDYERYNSQLLSFVRDLNQYRADIKEMGLS----LQWLYSARGDFFRATSRLTTDFGN 542
Query: 808 LERNLDEKLKEFNEK 822
E+ +K+ N++
Sbjct: 543 AEKTDRFVMKKLNDR 557
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.6 bits (71), Expect = 2.0
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 5/139 (3%)
Query: 237 ELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVET 296
E+ L E L +I+ + K D + KL V + + ++
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71
Query: 297 LEASLKQKEQELEGWTDNDNWGSSGNEQD-----IEALKKENEEIKEKLAKQESTLAKLK 351
A + ++++ S E+D +E E ++ ++ ++ LK
Sbjct: 72 TNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131
Query: 352 THSESLQKQLLEKEMELEE 370
L+K LE E +E
Sbjct: 132 KEMLELEKLALELESLVEN 150
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 32.2 bits (74), Expect = 2.1
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 101 IRALNEEVSQLKTKENELHSRIEELEDKLQQ-KIDDEKSVSYQLEEKAIEISQLTEHNRF 159
I ++E S+++ + ++ELE KL + + + + +V Q EKA + L + +
Sbjct: 375 IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKA---ASLRDTEQR 431
Query: 160 LQEEMQSLKDKLRDLDEN----VTVEDI 183
L+E+++ K ++ VTV+DI
Sbjct: 432 LREQVEDTKKSWKEKQGQENSEVTVDDI 459
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus
HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A
{Oceanicola granulosus} PDB: 3bvc_A
Length = 216
Score = 31.5 bits (71), Expect = 2.2
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 194 KDEVIEKLKAELESVEKALREKESEVEEWGNNDAWG--ASDDVKEELEKLVVEKQELIEV 251
+ AE + ++ E + +EW + + S +L +L++
Sbjct: 20 SEHGPALDPAEFAASCYSIAEDDDAGQEWCEREGYPGYTSYASLTDLPWRFPIFADLVKS 79
Query: 252 IQNHETLIAK 261
+ H A+
Sbjct: 80 LDAHVAAFAE 89
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure initiative;
2.80A {Cupriavidus metallidurans}
Length = 359
Score = 31.6 bits (72), Expect = 2.3
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 1429 GQV-ATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEADGEPAQ 1487
G V T++ S LA A+ + +++A+ L+ +L S + D E AQ
Sbjct: 82 GDVLFTID------SADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQ 135
Query: 1488 EREVVAQHVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRL 1531
A + + + R L + T+ + L +
Sbjct: 136 SDYDQAA--SESQRADAR----LAQLGAKGGGTLQAGGGHILAV 173
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 32.2 bits (74), Expect = 2.3
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 259 IAKLEADLTRVKEEKE-AEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNW 317
+ +LE L V++EK+ A S + E+ A L+ + L ++ ++ +
Sbjct: 396 LKELEQKLDEVRKEKDAAVQSQEFEKAA---SLRDTEQRLREQVEDTKKSWK--EKQGQE 450
Query: 318 GSSGNEQDIEA---------LKKENEEIKEKLAKQESTLAK 349
S DI + K + +KL E+ L
Sbjct: 451 NSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHS 491
Score = 31.8 bits (73), Expect = 2.9
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 101 IRALNEEVSQLKTKENELHSRIEELEDKLQQ-KIDDEKSVSYQLEEKAIEI-SQLTEHNR 158
I ++E S+++ + ++ELE KL + + + + +V Q EKA +
Sbjct: 375 IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLRE 434
Query: 159 FLQEEMQSLKDKLRDLDENVTVEDI 183
+++ +S K+K + VTV+DI
Sbjct: 435 QVEDTKKSWKEKQGQENSEVTVDDI 459
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP:
h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 31.9 bits (71), Expect = 2.3
Identities = 30/180 (16%), Positives = 60/180 (33%)
Query: 921 SIIMEKCKQYEDKCIELESTLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMN 980
II + + Y + + L + T ++ + L LE Q + + ++
Sbjct: 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVS 113
Query: 981 EELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ 1040
EL+ TLKQ T K L Q +L +I K + + + Q
Sbjct: 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQ 173
Query: 1041 DKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNA 1100
Y +++ L Q S + L + + + + V + ++ +A
Sbjct: 174 VDKEGYDNIQKHLTQASSIDMHPDFQTTTLSTLKMRPLKDSNVPEHFKLKPSPEMQAMSA 233
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 31.9 bits (72), Expect = 2.3
Identities = 29/185 (15%), Positives = 68/185 (36%), Gaps = 25/185 (13%)
Query: 95 EDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLT 154
E Y E ++ + + E+ + E +Q K+ +LE++
Sbjct: 63 ESYGESVK--QAVLLNVLGSGEEIPDPLSPGERGIQAKLK-------ELEDEQRNELVRL 113
Query: 155 EHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALRE 214
++N ++E+ +++ + +I+ + + L + S K L E
Sbjct: 114 KYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ---------FDILNKAVTSYNKILTE 164
Query: 215 KESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKE 274
++ ++ A+ KE E+ E + E + L +E + ++EE
Sbjct: 165 EDLQMRRL-------ATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAI 217
Query: 275 AEVSG 279
E++G
Sbjct: 218 QEIAG 222
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain, transport,
transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A
2raj_A 2rai_A 2rak_A*
Length = 366
Score = 31.6 bits (71), Expect = 2.5
Identities = 17/212 (8%), Positives = 66/212 (31%), Gaps = 8/212 (3%)
Query: 914 NAKVTELSIIMEKCKQYEDKCIELESTLDAKLTDFSTKEQLN-KNKMAELSAMLESVQAE 972
+ + E+ E ++ + L + + + ++ L+S+
Sbjct: 160 DLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLAT- 218
Query: 973 NISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTL 1032
+ + L + + + T+E +I ++ ++ L E +
Sbjct: 219 -VFSSSGYQGETDLNDAITEAGKTYE---EIASLVAEQPKKDLHFLMECNHEYKGFLGCF 274
Query: 1033 EIQVKELQDKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFE-VKTNTLSDL 1091
+ + + + + + + + + + R+ E +N + D
Sbjct: 275 PDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDY 334
Query: 1092 QTQLDTY-NAKITHAALVEQELGEMKNQMQTL 1122
+ + Y ++ + ++L + ++ +
Sbjct: 335 NSVIRLYLEQQVQFYETIAEKLRQALSRFPVM 366
Score = 30.1 bits (67), Expect = 7.1
Identities = 22/196 (11%), Positives = 63/196 (32%), Gaps = 11/196 (5%)
Query: 649 TLRNEIQELHAKLINVEALVN-QAQVEKQALDGKYEELKEKYEQMSEKFENQTGKDSVDI 707
+ + + + + + + L +Y+++ + + ++ F + + D+
Sbjct: 172 AVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDL 231
Query: 708 DTLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLE 767
+ I EE+ L+ E+ D + E L +I +
Sbjct: 232 NDAITEAGKTYEEIASLVAEQPKKDLHFLM-ECNHEYKGFLGC-----FPDIIGTHKGAI 285
Query: 768 AKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEKLKEFNEKEISY- 826
K+ E + + D + + LQ ++ ++ ++N Y
Sbjct: 286 EKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQA---EMNHFHSNRIYDYNSVIRLYL 342
Query: 827 NENIEASNHKIQQLTQ 842
+ ++ ++L Q
Sbjct: 343 EQQVQFYETIAEKLRQ 358
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 31.3 bits (70), Expect = 2.7
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 1473 MSSNDRPEADGEPAQEREVVAQHVAPVETSRERNELALRLQNL--QEEKTMLLTEINDLR 1530
M ++R EA G P + RE L +L+N T +I+ L
Sbjct: 1 MGESERSEAFGIPRDSPLSSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLE 60
Query: 1531 LNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDL 1568
++L N +L + L + + +L+ + + L
Sbjct: 61 ARIDSLAARNSKLMETLKEARQ----QLLALREEVDRL 94
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane
fusion protein, drug efflux pump, periplasmic protein;
2.99A {Escherichia coli}
Length = 341
Score = 31.2 bits (71), Expect = 3.5
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 1429 GQV------ATLEKQLKTTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPEAD 1482
Q+ E Q+K TL Q + + +L LA+ +L + + D
Sbjct: 56 DQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD 115
Query: 1483 GEPAQEREVVAQ-HVAPVETSRERNELALRLQNLQEEKT 1520
+ A V Q + ++ +RN+ +L + T
Sbjct: 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYT 154
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical
dehydratase, lyase; 1.82A {Clostridium difficile} PDB:
3o3n_A* 3o3o_A
Length = 408
Score = 31.2 bits (70), Expect = 3.6
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 14/132 (10%)
Query: 116 NELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKL---- 171
+ I++LE +K D +K E+ ++IS E+ R + M D
Sbjct: 158 AQFEEAIKQLEIISGKKFDPKKF------EEVMKISA--ENGRLWKYSMSLPADSSPSPM 209
Query: 172 --RDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNNDAWG 229
DL + V + + +IE+L+ +++ + + R +E W
Sbjct: 210 NGFDLFTYMAVIVCARGKKETTEAFKLLIEELEDNMKTGKSSFRGEEKYRIMMEGIPCWP 269
Query: 230 ASDDVKEELEKL 241
+ L K
Sbjct: 270 YIGYKMKTLAKF 281
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 31.2 bits (71), Expect = 4.0
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 16/143 (11%)
Query: 88 FELMPNVEDYNEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKA 147
+++ + + ++K R K N + K + K D + + K
Sbjct: 33 PDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGA---KKKAKEADGDTSEIPPQVKE 89
Query: 148 IEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAEL-- 205
+ + + Q + LK +DL + V + +E +KL +
Sbjct: 90 AYENGTLKGEQVEQLCVLQLKQLSKDLSDQV------AGLAKEAQQLEEERDKLMLNVGN 143
Query: 206 ---ESVEKALREKES--EVEEWG 223
ESV A E+ V +G
Sbjct: 144 ILHESVPIAQDEETGNTVVRTFG 166
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 30.3 bits (68), Expect = 4.3
Identities = 30/218 (13%), Positives = 74/218 (33%), Gaps = 34/218 (15%)
Query: 140 SYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIE 199
+ + + L ++ M + + + +D+ A E+ + + E
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGA-EALLERHQEHRT 60
Query: 200 KLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLI 259
++ A + + + + + AS ++K++L+ L E+ +L +
Sbjct: 61 EIDARAGTFQAFEQFGQQLLAHGHY-----ASPEIKQKLDILDQERADLEKAWVQRRM-- 113
Query: 260 AKLEADLTRVKEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGS 319
L+Q ++ E E + +E L
Sbjct: 114 --------------------MLDQCLELQLFHRDCEQAENWMAAREAFLN------TEDK 147
Query: 320 SGNEQDIEALKKENEEIKEKLAKQESTLAKLKTHSESL 357
+ +EAL K++E+ + + QE +A L+ ++ L
Sbjct: 148 GDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQL 185
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 31.0 bits (69), Expect = 4.5
Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 7/183 (3%)
Query: 115 ENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDL 174
+ + + E + L+Q + D + LE+K + L + F + ++S D
Sbjct: 4 NHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLN 63
Query: 175 DENVT-----VEDIKKANESAIAKKDEVIEKLKAELESVEKALRE-KESEVEEWGNNDAW 228
N + ++ +++ + + ++ +L L ++E + + E+ +W
Sbjct: 64 GNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQI 123
Query: 229 -GASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEADLTRVKEEKEAEVSGKLEQDAMV 287
L++L L E I KLE +V + + V + + +
Sbjct: 124 ACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERI 183
Query: 288 KEL 290
EL
Sbjct: 184 VEL 186
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 30.8 bits (69), Expect = 4.9
Identities = 39/314 (12%), Positives = 107/314 (34%), Gaps = 12/314 (3%)
Query: 493 EESGLLRQKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLR 552
+ L+ + + + L + + + PV +++ +E+L+RE E
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREM-GTVELLTREGEIDI 119
Query: 553 TRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAV 612
+ + G+ V E L +E ++ + + A
Sbjct: 120 AKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTAT 179
Query: 613 EKQKGLEEEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQ 672
L +E +ED +S D + + R + EL A+ + +
Sbjct: 180 HVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKG 239
Query: 673 VEKQALDGKYEELKEKYEQMSEKFENQTGKDSVD-IDTLIKNLQSKKEELCRLLDEKNTL 731
+ +L E ++Q + + V+ + ++ +++++ + +L E+ +
Sbjct: 240 RSHATAQEEILKLSEVFKQF--RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 297
Query: 732 DNIKVEKENLEIQLD--------NLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNE 783
+ +N + +K++ + + + K+ ++ +
Sbjct: 298 PKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ 357
Query: 784 INDLNKRISLFEEN 797
+ D+N+R+S+ E
Sbjct: 358 VKDINRRMSIGEAK 371
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 29.4 bits (67), Expect = 5.0
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 1090 DLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQ--EESIA-------- 1139
+L ++ T + + + E+ E++ MQ LE E Q L E S+
Sbjct: 21 ELNREVATNSELVQSG---KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77
Query: 1140 -SNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEA 1180
++ + S+++ + ++ + E L++ K LE
Sbjct: 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQ 119
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 30.1 bits (68), Expect = 5.5
Identities = 13/96 (13%), Positives = 20/96 (20%), Gaps = 13/96 (13%)
Query: 1251 EAKDKTLQEMQAALEK------HLSEKYQFEK----EALELRTEDLEYKLQEKEKMIQEL 1300
+T L + Y+ E + E Y
Sbjct: 114 ADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLS 173
Query: 1301 NEMKQSFFIGDSKDSVRYSDEEHVQ---ELRELQLM 1333
+ +FFI DE H Q +
Sbjct: 174 VVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITW 209
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 30.4 bits (68), Expect = 5.7
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 98 NEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHN 157
N I +N + + + + L R+E L K++ D +Y E+ L E+
Sbjct: 393 NSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLD--VWTYN-----AELLVLMENE 445
Query: 158 RFL---QEEMQSLKDKLR-DLDEN 177
R L +++L DK+R L +N
Sbjct: 446 RTLDFHDSNVKNLYDKVRMQLRDN 469
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system; 2.60A
{Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D 1ja3_A
1p1z_D
Length = 203
Score = 29.9 bits (67), Expect = 6.5
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 1325 QELRELQLMNESLQNEVLRSATEIDNMKETITYLEQYNLQLSKSQESSTTLTLLQSELAE 1384
Q + Q NE+L + NM+ E+ + +KS + + L+ E
Sbjct: 7 QYNQHKQETNETLNH------HNCSNMQRAFNLKEE--MLTNKSIDCRPSNETLEYIKGE 58
Query: 1385 QRTLNQQLVQIVNTK 1399
Q + V
Sbjct: 59 QHDRWDSKTKTVLDS 73
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET: PTR;
2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5
d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 30.3 bits (67), Expect = 6.8
Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 2/130 (1%)
Query: 1021 EIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELEQIQ--ARLEAERTQWI 1078
++S I+ T+ + E + L H ++ L + + L ++
Sbjct: 6 NLSSPQPILDTIYKLLSEQEQTLVQMIHEQSLLLNRLPPTLDENSLAPLKSLSQKQITLS 65
Query: 1079 HEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQEESI 1138
+ + + L + + + ++Q+L Q+ L E Q +L
Sbjct: 66 GQMNTEMSALDATKKGMILEPTDLAKLFALKQDLQIQFKQLSLLHNEIQSILNPQHSAPK 125
Query: 1139 ASNFLKNELQ 1148
+ L + Q
Sbjct: 126 PNVALVLKSQ 135
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 30.1 bits (68), Expect = 6.9
Identities = 15/123 (12%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 1603 QVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELN 1662
K T + +++ V+ +L E + +
Sbjct: 271 YKKIDTSALKSIRDSCRNFPGYVR---VVYEEDSGILPDLMGE-----------IDNLVK 316
Query: 1663 NSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNK 1722
E+ +++ + +E + L + L ++ + ++L + +++L++E+ K
Sbjct: 317 IERKSRREIEEVLRESPEEFKEELDKLDYFELFKEYLKKREENHEKLLKILDELLDEVKK 376
Query: 1723 KEA 1725
EA
Sbjct: 377 SEA 379
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus,
UBL conjugation PA protein binding; 1.90A {Saccharomyces
cerevisiae}
Length = 362
Score = 30.2 bits (67), Expect = 7.0
Identities = 36/307 (11%), Positives = 94/307 (30%), Gaps = 35/307 (11%)
Query: 743 IQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQ 802
+ L +Y+D++ I + + +NA + + ++ ++
Sbjct: 65 LARYELPMSYRDQVVQFILKNTNGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMEN 124
Query: 803 RSILDLERNLDEKLKEFNEKEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVK 862
+ + + + N E ++++ I A E+ L S +K
Sbjct: 125 YNP----DTIFNGIVKINSNEKTFDDEILAQIGGALHDIDESWELLLSFANTIRSNWEIK 180
Query: 863 Q---EQALLAAAPVDDNIVIENQQLKQNLESVKQENTLVVENLQNLIAQKDYE------- 912
+ L + + I++ + L V L N +++
Sbjct: 181 TPAYDIVRLIVKKLPYSSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESN 240
Query: 913 --INAKVTELSIIMEKCKQYEDKCIELE-STLDAKLTDFSTKEQLNKNKMAELSAMLESV 969
+ + + + + + + STL + TK + + ++ + +
Sbjct: 241 QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTK 300
Query: 970 QAENISIKQMNEE-----LQAL------TETLKQTSNTHEEDRKILDEY--KQRVQELDA 1016
+ Q EE A TL+Q +N+ I Y R ++
Sbjct: 301 -YGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSYGNVPRFKD--- 356
Query: 1017 KLAEEIA 1023
+ ++++
Sbjct: 357 -IFDDLS 362
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding,
phosphorylation, acetylation, alternative splicing,
coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 7.4
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 951 KEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQR 1010
+L + Q + QM EE + +K+ E ++ + K++
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEM--EMEQVFEMKVKEK 349
Query: 1011 VQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELEQIQARL 1070
VQ+L AE + + LE Q KEL++K R E+E + ++ LEQ +
Sbjct: 350 VQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQ---FEDEKANWEAQQRILEQQNSSR 406
Query: 1071 EAER 1074
E+
Sbjct: 407 TLEK 410
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 30.2 bits (67), Expect = 7.5
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 7/111 (6%)
Query: 123 EELEDKLQQKID--DEKSVSYQLEEKAIEISQLTEHNRFLQEEMQSLKDKLRDLDENV-- 178
E + + ID + + N Q Q L + E +
Sbjct: 448 EAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPLPP 507
Query: 179 ---TVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKESEVEEWGNND 226
+ ++ K + K+K +E +++ + E + +N
Sbjct: 508 IQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNH 558
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 30.0 bits (67), Expect = 8.5
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 98 NEKIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKSVSYQLEEKAIEISQLTEHN 157
N I NE+ Q++ + +E+ RI++LE ++ D SY E+ E+
Sbjct: 374 NRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKID--LWSYN-----AELLVALENQ 426
Query: 158 RFLQ---EEMQSLKDKLR-DLDEN 177
+ EM L +K R L EN
Sbjct: 427 HTIDLTDSEMNKLFEKTRRQLREN 450
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 29.9 bits (66), Expect = 8.9
Identities = 42/413 (10%), Positives = 130/413 (31%), Gaps = 15/413 (3%)
Query: 270 KEEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEAL 329
++ K +V K + + L++K+ + W EQ +
Sbjct: 58 RKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQR--LEQAEKGY 115
Query: 330 KKENEEIKEKLAKQESTLAKLKTHSESLQKQLLEKEMELEEWGNNDSWGGDNDKLATLQQ 389
++ +L + E K + + + + KE L + D ++ L +
Sbjct: 116 EEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQ---KDYESASLTEVRALLR 172
Query: 390 ENKVLNEKVSELQTQLLSVEEALKK-KENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEK 448
+++ ++ Q ++ + ++ E D D +D + + L + +
Sbjct: 173 KHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRRE 232
Query: 449 TIVELKSQEELLKQALIDKENELSEWGQ---------TNEWGSPSSSDLNTLREESGLLR 499
+ ++ E + Q ++ + + + + S ++ +L +
Sbjct: 233 ALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFK 292
Query: 500 QKLSEQKVIISKLKTQLEAAQQGTSSHSHPVDQQVQDRESRIEMLSRENEGLRTRVEQLG 559
L E + ++ S++ + ++ L + + ++ V
Sbjct: 293 ATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRD 352
Query: 560 LVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLE 619
++ ++ AQ A + ++ +++ +I++ LE + + K E
Sbjct: 353 QSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYE 412
Query: 620 EEIQQLEEDTSILREQLESKDQVDDSIEKTLRNEIQELHAKLINVEALVNQAQ 672
I + + L + + K ++ + + + +
Sbjct: 413 HNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTI 465
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification,
5-carboxymethylaminomethyl uridine, WOBB uridine, FAD;
HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Length = 637
Score = 30.1 bits (69), Expect = 9.1
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 956 KNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELD 1015
K E+ E ++E +S+ + TL + T ++ ++
Sbjct: 494 KELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGY----EVPQH 549
Query: 1016 AKLAEEIASKTSIIQTLEIQVK 1037
+ EE+ EIQ+K
Sbjct: 550 PYVKEEV----------EIQLK 561
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium; 1.78A
{Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 29.4 bits (65), Expect = 9.1
Identities = 27/199 (13%), Positives = 67/199 (33%), Gaps = 3/199 (1%)
Query: 941 LDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTHEED 1000
+ + +F +E EL L +++ + ++ E L + E +
Sbjct: 40 FEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMV 99
Query: 1001 RKILDEYKQR-VQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSK 1059
+ D + Q+L + + ++ ++ + KL Y + L +S
Sbjct: 100 GEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSS 159
Query: 1060 VYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDTYNAKITHAALVEQELGEMK--N 1117
+ E ++ E E + FE L + L + E K
Sbjct: 160 KRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHK 219
Query: 1118 QMQTLEYEKQELLKQIQEE 1136
++ L ++ E++ ++ ++
Sbjct: 220 EIAVLCHKLYEVMTKLGDQ 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.122 0.309
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 24,840,098
Number of extensions: 1492764
Number of successful extensions: 6965
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5855
Number of HSP's successfully gapped: 1383
Length of query: 1857
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1749
Effective length of database: 3,686,325
Effective search space: 6447382425
Effective search space used: 6447382425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 65 (29.8 bits)