RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10988
(1857 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 43.0 bits (100), Expect = 2e-04
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 16/94 (17%)
Query: 1739 CLVTNMIVNFLTAPSRPSRHQALQILASVIDMTPQDRQKIGLEPSQAFNP------NQSL 1792
C + V F + S + + + +NP N+
Sbjct: 264 CWLPYAGVAFYIFTHQGSDFGPIFMTIPAF---------FAKTSA-VYNPVIYIMMNKQF 313
Query: 1793 SEAFIQFLESESSPRSKAQSSTPVSRRTSSTTSP 1826
+ L +P ++ST VS+ +S +P
Sbjct: 314 RNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAP 347
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 291
Score = 35.6 bits (82), Expect = 0.045
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 160 LQEEMQSLKDKLRDL-----------DENVTVEDIKKANESAIAKKDEVIEKLKAELESV 208
+ +++ K L L + + + A E AI + E+++KL +++
Sbjct: 26 VAAKLEKTKTDLNSLPKEKSDISSTTGKPDSTGSVGTAVEGAIKEVSELLDKLVKAVKTA 85
Query: 209 EKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEAD 265
E A + E + DA +D K ++ + +E++E E L A A
Sbjct: 86 EGASSGTAAIGEVVADADAAKVAD--KASVKGIAKGIKEIVEAAGGSEKLKAVAAAK 140
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 36.4 bits (83), Expect = 0.045
Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 17/190 (8%)
Query: 587 KERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQL---ESKDQVD 643
+ L L +E ++ ++ Q L+EE +QL +D LRE E+ +
Sbjct: 897 RVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLP 956
Query: 644 DSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQTGKD 703
+I + ++N Q H D +++ + + E GK+
Sbjct: 957 VNIRRIIQNAQQTFHIDHTKPS-------------DLTIKDIVLGVKDLQENLLVLRGKN 1003
Query: 704 SVDIDTLIKNLQSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNY-QDKINTLIQS 762
+ + + L L + L ++ K+ + L N+ + + ++
Sbjct: 1004 EIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMV 1063
Query: 763 KNDLEAKISE 772
I E
Sbjct: 1064 GVLAAQSIGE 1073
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 35.6 bits (81), Expect = 0.065
Identities = 26/192 (13%), Positives = 60/192 (31%), Gaps = 37/192 (19%)
Query: 158 RFLQEEMQSLKDKLRDLDENVTVEDIKKANESAIAKKDEVIEKLKAELESVEKALREKES 217
LQ E++ +++ + + +++ N+ ++ +I++L+ +
Sbjct: 596 ERLQWEVEKYSFQVKFIKM-IIEKELTVTNK----PRNAIIQELENLGFPRFNKEGKPYY 650
Query: 218 EVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQNHETLIAKLEA-------DLTRVK 270
+ + E ++ VI E L E LT
Sbjct: 651 GSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLT--- 707
Query: 271 EEKEAEVSGKLEQDAMVKELKSKVETLEASLKQKEQELEGWTDNDNWGSSGNEQDIEALK 330
K ++K+ + K LE L + D W D++A +
Sbjct: 708 ---------KERYQKLLKQKQEKETELE--------NLLKLSAKDIW-----NTDLKAFE 745
Query: 331 KENEEIKEKLAK 342
+E ++ A+
Sbjct: 746 VGYQEFLQRDAE 757
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 33.2 bits (74), Expect = 0.32
Identities = 13/72 (18%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 325 DIEALKKENEEIKEKL-----AKQESTLAKLKTHSESLQKQLLEKEMELEEWGNND---- 375
+++ L++E E++K ++ A ++TL+++ + + + + + L G+
Sbjct: 3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLR--GHLAKIYA 60
Query: 376 -SWGGDNDKLAT 386
WG D+ L +
Sbjct: 61 MHWGTDSRLLVS 72
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 256
Score = 31.3 bits (71), Expect = 0.87
Identities = 17/127 (13%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 135 DEKSVSYQLEEKAIEISQLTEHNRFLQE-EMQSLKDKLRDLDENVTVEDIKKANESAIAK 193
E +S EE ++ + + E ++L + + +K E + +
Sbjct: 13 KEIKLSENFEESFLKAENPSPLPFNVSEVGAKALGKDYYRILRKTALAVSEKMVEKELRR 72
Query: 194 KDEVIEKLKAELESVEKALREKESEVEEWGNNDAWGASDDVKEELEKLVVEKQELIEVIQ 253
+D + L LE +++++ ++E+ ++ ++++ +L ++++ I+
Sbjct: 73 EDRYVVALVKALEEIDESINMLNEKLEDIRAVKESEITEKFEKKIRELRELRRDVEREIE 132
Query: 254 NHETLIA 260
IA
Sbjct: 133 EVMEKIA 139
>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
562]}
Length = 343
Score = 30.7 bits (68), Expect = 1.5
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 10/130 (7%)
Query: 1563 QTIQ-----DLHVKLRE---AEERVKSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKL 1614
Q ++ D H+ LR+ + V ++ Y A V N T V++ ++++
Sbjct: 2 QVLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMPNLAPPVTT--VEAAVAYRQRI 59
Query: 1615 QEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQL 1674
+ + D LT+ E + + + + NS + +
Sbjct: 60 LDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAI 119
Query: 1675 ISTLQHQLQE 1684
+ L+ +
Sbjct: 120 MPVLERMEKI 129
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 30.4 bits (68), Expect = 2.2
Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 983 LQALTETLKQTSNTHEEDRKILD--EYKQRVQELDAKLAE-EIASKTSIIQTLEIQVKEL 1039
+ + ++ + + R LD K+R++E++A+L + ++ ++ Q L + L
Sbjct: 1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSL 60
Query: 1040 QDKLRSYTHVENEL 1053
+ + + ++ L
Sbjct: 61 EAVVDTLDQMKQGL 74
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1
(Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 226
Score = 29.4 bits (66), Expect = 3.5
Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 15/130 (11%)
Query: 1561 AEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALT-SQVKSLTEQKEKLQEKLY 1619
+Q + + KL + +QVEA S + +T+Q + + L
Sbjct: 85 VDQRLGEGQEKLHQMWLSWNQKTPQDAEKDPAKPEQVEARALSMFRDITQQLQSMCVAL- 143
Query: 1620 QAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYAKNNELTQLISTLQ 1679
Q ++++ E+ + + LQ + ++ + +++ +
Sbjct: 144 -----GASIQGLPSHVR--------EQAQQARSQVNDLQATFSGIHSFQDLSAGVLAQTR 190
Query: 1680 HQLQEARESL 1689
++ ARE+L
Sbjct: 191 ERIARAREAL 200
>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 179
Score = 29.0 bits (65), Expect = 4.2
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 1615 QEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGE 1660
+ + Y D++ + +L N + ++ F E + + L+G
Sbjct: 57 KMRNYSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGS 102
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 598
Score = 29.3 bits (65), Expect = 4.7
Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 1160 DNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATIAT 1219
+N E + L +KE+A + T+++ ED +R+ A
Sbjct: 35 ENEKKKNEISA------ELAKFMKEVASDTTKFQWRSYQSEDLKRQFKAL---TKLGYAA 85
Query: 1220 LNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEAL 1279
L D A + + L ++ +++ K + KD T ++ L+ + E ++
Sbjct: 86 LP----EDDYAELLDTLSAMESNFAKV-KVCDYKDSTKCDLA--LDPEIEEVISKSRDHE 138
Query: 1280 ELRTEDLEYKLQEKEKMIQELNEMKQ 1305
EL E+ + + + +
Sbjct: 139 ELAYYWREFYDKAGTAVRSQFERYVE 164
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 27.4 bits (61), Expect = 6.2
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 100 KIRALNEEVSQLKTKENELHSRIEELEDKLQQKIDDEKS 138
++ L +++ QL+ E +L + +L+ +D S
Sbjct: 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDS 40
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
monocytogenes [TaxId: 1639]}
Length = 328
Score = 28.4 bits (62), Expect = 9.0
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 715 QSKKEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELN 774
+EL ++LD + ++E LE + +Q ++ + ++ + K+
Sbjct: 2 NEATQELFQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQKEELSSEKQLKLQASY 61
Query: 775 NAQHNKNNEINDLNKRISLF---------EENNAFLQRSILDLERNLDEKLKEFNEKE 823
+ +N ++ K + L + N+ SI + L EK+ + +
Sbjct: 62 ESIELENFSNEEIRKGLQLALLKGMKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNV 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.304 0.122 0.309
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,840,429
Number of extensions: 273865
Number of successful extensions: 1353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 297
Length of query: 1857
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1758
Effective length of database: 1,048,326
Effective search space: 1842957108
Effective search space used: 1842957108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 60 (27.2 bits)