BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1099
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|B Chain B, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|C Chain C, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|D Chain D, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
Length = 501
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/240 (53%), Positives = 161/240 (67%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA--------YYYCFVC--AGSRTYVQE 424
I AA SNLKRVSLELGGKSP ++ ADAD+D A +Y+ C A SR +V+E
Sbjct: 254 IKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEE 313
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
IYD F G+P V QGPQ+D E + K+L+ I+SG ++G KLE GG
Sbjct: 314 SIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGG 373
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
G+KGYFI+PTVFS+VTDD +IA+EEIFGPVQ I+KFK+LD+VI+RAN+T YGL++GI
Sbjct: 374 PWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIF 433
Query: 545 TTNIDTANTFAHAINAG-------SAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T +ID A T + A+ +G S V Q PFGGFK SG GRELG+ EYTE+KTVT
Sbjct: 434 TNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVT 493
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 117/148 (79%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+D E + K+L+ I+SG ++G KLE GG G+KGYFI+PTVFS+VTDD +IA+EEIFGPV
Sbjct: 346 IDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPV 405
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAP 335
Q I+KFK+LD+VI+RAN+T YGL++GI T +ID A T + A+ +G+VW+NCY V Q P
Sbjct: 406 QQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCP 465
Query: 336 FGGFKESGIGRELGKAALDEYTELKTVT 363
FGGFK SG GRELG+ EYTE+KTVT
Sbjct: 466 FGGFKMSGNGRELGEYGFHEYTEVKTVT 493
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 117/180 (65%), Gaps = 3/180 (1%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR +V+E IYD F G+P V QGPQ+D + K+L+ I+SG ++G
Sbjct: 307 SRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGA 366
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KLE GG G+KGYFI+PTVFS+VTDD +IA+EEIFGPVQ I+KFK+LD+VI+RAN+T Y
Sbjct: 367 KLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFY 426
Query: 191 GLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 250
GL++GI T +ID A T + A+ +G+V ++ V G G K+ G+ G+ G+
Sbjct: 427 GLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFG---GFKMSGNGRELGEYGF 483
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 44/53 (83%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M WK GPAL+ G V++KPAEQTPLTAL++ +L ++AGFP GV++++PGYGP
Sbjct: 175 MFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGP 227
>pdb|1O9J|A Chain A, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|B Chain B, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|C Chain C, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|D Chain D, The X-Ray Crystal Structure Of Eta-Crystallin
Length = 501
Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 207/365 (56%), Gaps = 48/365 (13%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMS-APYW 59
+LA K GPAL G V++KPAEQTPLTAL+VA+L ++AGFP GV++++PGYGP + A
Sbjct: 175 LLACKIGPALCCGNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAIS 234
Query: 60 RKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVL 119
+ +A+ T V + I + +++ G + ++F
Sbjct: 235 SHMDVDKVAFTGSTEVGKMIQEAAAKSNLKRV-----------TLELGAKNPCIVFADA- 282
Query: 120 NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 179
+ S VE F VF+N IA ++F V+ I + +
Sbjct: 283 -DLDSAVE-----------------FAHQGVFTNQGQSC-IAASKLF--VEEAIYDEFVQ 321
Query: 180 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKL 238
+ERA +G N +N G ++ K++ I+SG ++G KL
Sbjct: 322 RSVERAKKYVFG-------------NPLTPGVNHGPQINKAQHNKIMELIESGKKEGAKL 368
Query: 239 EAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGL 298
E GG G+KGYFI+PTVFSNVTDD +IA+EEIFGPVQ I+KFK+LDEVI+RAN+T YGL
Sbjct: 369 ECGGGPWGNKGYFIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGL 428
Query: 299 ASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTE 358
+G+ T ++D A T + A+ AG+VW+NCY A Q+P GGFK SG GRE+G+ + EYTE
Sbjct: 429 VAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTE 488
Query: 359 LKTVT 363
+KTVT
Sbjct: 489 VKTVT 493
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 154/240 (64%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF----------VCAGSRTYVQE 424
I AAA SNLKRV+LELG K+P ++ ADAD+D A + A S+ +V+E
Sbjct: 254 IQEAAAKSNLKRVTLELGAKNPCIVFADADLDSAVEFAHQGVFTNQGQSCIAASKLFVEE 313
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
IYD F G+P V GPQ++ K++ I+SG ++G KLE GG
Sbjct: 314 AIYDEFVQRSVERAKKYVFGNPLTPGVNHGPQINKAQHNKIMELIESGKKEGAKLECGGG 373
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
G+KGYFI+PTVFSNVTDD +IA+EEIFGPVQ I+KFK+LDEVI+RAN+T YGL +G+
Sbjct: 374 PWGNKGYFIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGLVAGVF 433
Query: 545 TTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D A T + A+ AG+ A Q+P GGFK SG GRE+G+ + EYTE+KTVT
Sbjct: 434 TKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVT 493
>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1A4Z|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
Length = 499
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 158/242 (65%), Gaps = 17/242 (7%)
Query: 373 HSIMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYV 422
H I AA SNLKRV+LE+GGKSP +I +DAD+D A++ F CAGSRT+V
Sbjct: 250 HLIQVAAGKSNLKRVTLEIGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFV 309
Query: 423 QEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
QEDIY F G+PFD +QGPQVD F KVL YIKSG E+G KL G
Sbjct: 310 QEDIYAEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFKKVLGYIKSGKEEGLKLLCG 369
Query: 483 GKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
G D+GYFI+PTVF ++ D IA+EEIFGPV I+KFK+++EV+ RAN++KYGLA+
Sbjct: 370 GGAAADRGYFIQPTVFGDLQDGMTIAKEEIFGPVMQILKFKSMEEVVGRANNSKYGLAAA 429
Query: 543 IVTTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKT 595
+ T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L YTE+KT
Sbjct: 430 VFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKT 489
Query: 596 VT 597
VT
Sbjct: 490 VT 491
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 108/148 (72%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
VD F KVL YIKSG E+G KL GG D+GYFI+PTVF ++ D IA+EEIFGPV
Sbjct: 344 VDETQFKKVLGYIKSGKEEGLKLLCGGGAAADRGYFIQPTVFGDLQDGMTIAKEEIFGPV 403
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAP 335
I+KFK+++EV+ RAN++KYGLA+ + T ++D AN + A+ AG+VW+NCY Q+P
Sbjct: 404 MQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSP 463
Query: 336 FGGFKESGIGRELGKAALDEYTELKTVT 363
FGG+K SG GRELG+ L YTE+KTVT
Sbjct: 464 FGGYKLSGSGRELGEYGLQAYTEVKTVT 491
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 99/146 (67%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SRT+VQEDIY F G+PFD +QGPQVD F KVL YIKSG E+G
Sbjct: 305 SRTFVQEDIYAEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFKKVLGYIKSGKEEGL 364
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KL GG D+GYFI+PTVF ++ D IA+EEIFGPV I+KFK+++EV+ RAN++KY
Sbjct: 365 KLLCGGGAAADRGYFIQPTVFGDLQDGMTIAKEEIFGPVMQILKFKSMEEVVGRANNSKY 424
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GLA+ + T ++D AN + A+ AG+V
Sbjct: 425 GLAAAVFTKDLDKANYLSQALQAGTV 450
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMS 55
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++V+PG+GP +
Sbjct: 173 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPGFGPTA 227
>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/240 (51%), Positives = 162/240 (67%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA--------YYYCFVC--AGSRTYVQE 424
I AA SNLKRV+LELGGKSP +I ADAD+D A ++ C AGSR +V+E
Sbjct: 252 IQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEE 311
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
IY+ F G PFD + +QGPQ+D + + K+L I+SGV +G KLE GGK
Sbjct: 312 SIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGK 371
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
G KG+FIEPTVFSNVTDD +IA+EEIFGPVQ I++FKT+DEVIERAN++ +GL + +
Sbjct: 372 GLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVF 431
Query: 545 TTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T +I+ A + A+ AG+ A+ Q+PFGGFK SG GRE+G+ L EY+E+KTVT
Sbjct: 432 TNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVT 491
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 193/366 (52%), Gaps = 50/366 (13%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMS-APYW 59
M WK PAL G V++KPAEQTPL+ALY+ AL ++AGFP GV+++LPGYGP + A
Sbjct: 173 MFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIA 232
Query: 60 RKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKV- 118
+ +A+ T V + I + +++ G + ++F
Sbjct: 233 SHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRV-----------TLELGGKSPNIIFADAD 281
Query: 119 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSN-VTDDFKIAREEIFGPVQTIIKFKT 177
L+Y QG G F+E +++ V + A+ I G F
Sbjct: 282 LDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGS-----PFDP 336
Query: 178 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGK 237
E + + +Y N I +G + + +E GGK
Sbjct: 337 TTEQGPQIDKKQY--------------NKILELIQSGVAEG-----------AKLECGGK 371
Query: 238 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 297
G RK G+FIEPTVFSNVTDD +IA+EEIFGPVQ I++FKT+DEVIERAN++ +G
Sbjct: 372 ---GLGRK---GFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFG 425
Query: 298 LASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYT 357
L + + T +I+ A + A+ AG+VWINCY A+ Q+PFGGFK SG GRE+G+ L EY+
Sbjct: 426 LVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYS 485
Query: 358 ELKTVT 363
E+KTVT
Sbjct: 486 EVKTVT 491
>pdb|1O05|A Chain A, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|B Chain B, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|C Chain C, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|D Chain D, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|E Chain E, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|F Chain F, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|G Chain G, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|H Chain H, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1NZX|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZZ|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1O00|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O01|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O02|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|3INJ|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3SZ9|A Chain A, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|B Chain B, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|C Chain C, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|D Chain D, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|E Chain E, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|F Chain F, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|G Chain G, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|H Chain H, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|4FQF|A Chain A, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
pdb|4FQF|B Chain B, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
pdb|4FQF|C Chain C, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
pdb|4FQF|D Chain D, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
Length = 500
Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 157/240 (65%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L YTE+KTVT
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 492
Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/364 (37%), Positives = 190/364 (52%), Gaps = 46/364 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 229
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 230 ----------AAIASHEDVDKV----------------AFTGSTEIGRVIQVAAGSSNLK 263
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ + + +T ++ DE
Sbjct: 264 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCC----CAGSRTFVQEDIYDE 317
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 318 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTEL 359
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRELG+ L YTE+
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 488
Query: 360 KTVT 363
KTVT
Sbjct: 489 KTVT 492
>pdb|3N81|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|B Chain B, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|C Chain C, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|D Chain D, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|E Chain E, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|F Chain F, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|G Chain G, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|H Chain H, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N82|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|B Chain B, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|C Chain C, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|D Chain D, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|E Chain E, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|F Chain F, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|G Chain G, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|H Chain H, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N83|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|B Chain B, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|C Chain C, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|D Chain D, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|E Chain E, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|F Chain F, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|G Chain G, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|H Chain H, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
Length = 500
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 157/240 (65%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L YTE+KTVT
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 492
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/364 (37%), Positives = 190/364 (52%), Gaps = 46/364 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 229
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 230 ----------AAIASHEDVDKV----------------AFAGSTEIGRVIQVAAGSSNLK 263
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ + + +T ++ DE
Sbjct: 264 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCC----CAGSRTFVQEDIYDE 317
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 318 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTEL 359
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRELG+ L YTE+
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 488
Query: 360 KTVT 363
KTVT
Sbjct: 489 KTVT 492
>pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|2VLE|A Chain A, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|B Chain B, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|C Chain C, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|D Chain D, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|E Chain E, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|F Chain F, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|G Chain G, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|H Chain H, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
Length = 494
Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 157/240 (65%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 247 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQE 306
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 307 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 366
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 367 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 426
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L YTE+KTVT
Sbjct: 427 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 486
Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/364 (37%), Positives = 190/364 (52%), Gaps = 46/364 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 168 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 223
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 224 ----------AAIASHEDVDKV----------------AFTGSTEIGRVIQVAAGSSNLK 257
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ + + +T ++ DE
Sbjct: 258 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCC----CAGSRTFVQEDIYDE 311
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 312 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 362
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 363 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 422
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTEL 359
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRELG+ L YTE+
Sbjct: 423 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 482
Query: 360 KTVT 363
KTVT
Sbjct: 483 KTVT 486
>pdb|3N80|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
Length = 500
Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 157/240 (65%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCXCAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L YTE+KTVT
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 492
Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 191/364 (52%), Gaps = 46/364 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 229
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 230 ----------AAIASHEDVDKV----------------AFTGSTEIGRVIQVAAGSSNLK 263
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ F + G +T ++ DE
Sbjct: 264 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALF---FNQGQCXCAGS-RTFVQEDIYDE 317
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 318 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTEL 359
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRELG+ L YTE+
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 488
Query: 360 KTVT 363
KTVT
Sbjct: 489 KTVT 492
>pdb|1NZW|A Chain A, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|B Chain B, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|C Chain C, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|D Chain D, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|E Chain E, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|F Chain F, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|G Chain G, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|H Chain H, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1O04|A Chain A, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|B Chain B, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|C Chain C, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|D Chain D, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|E Chain E, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|F Chain F, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|G Chain G, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|H Chain H, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
Length = 500
Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 157/240 (65%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCFV------CAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L YTE+KTVT
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 492
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 191/364 (52%), Gaps = 46/364 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 229
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 230 ----------AAIASHEDVDKV----------------AFTGSTEIGRVIQVAAGSSNLK 263
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ F + G +T ++ DE
Sbjct: 264 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALF---FNQGQCSCAGS-RTFVQEDIYDE 317
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 318 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTEL 359
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRELG+ L YTE+
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 488
Query: 360 KTVT 363
KTVT
Sbjct: 489 KTVT 492
>pdb|2ONN|A Chain A, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|B Chain B, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|C Chain C, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|D Chain D, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|E Chain E, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|F Chain F, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|G Chain G, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|H Chain H, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONO|A Chain A, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|B Chain B, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|C Chain C, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|D Chain D, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|E Chain E, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|F Chain F, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|G Chain G, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|H Chain H, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONP|A Chain A, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|B Chain B, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|C Chain C, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|D Chain D, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|E Chain E, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|F Chain F, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|G Chain G, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|H Chain H, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
Length = 500
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 157/240 (65%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D AN + A+ AG+ V Q+PFGG+K SG G+ELG+ L YTE+KTVT
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGQELGEYGLQAYTEVKTVT 492
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 190/364 (52%), Gaps = 46/364 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 229
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 230 ----------AAIASHEDVDKV----------------AFTGSTEIGRVIQVAAGSSNLK 263
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ + + +T ++ DE
Sbjct: 264 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCC----CAGSRTFVQEDIYDE 317
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 318 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTEL 359
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG G+ELG+ L YTE+
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGQELGEYGLQAYTEV 488
Query: 360 KTVT 363
KTVT
Sbjct: 489 KTVT 492
>pdb|4FR8|A Chain A, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|B Chain B, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|C Chain C, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|D Chain D, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|E Chain E, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|F Chain F, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|G Chain G, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|H Chain H, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
Length = 500
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 156/240 (65%), Gaps = 17/240 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYVQE 424
I AA +SNLKRV+L+LGGKSP +I +DAD+D A++ F AGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLQLGGKSPNIIMSDADMDWAVEQAHFALFFNQGQSCSAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L YTE+KTVT
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 492
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 120/195 (61%), Gaps = 10/195 (5%)
Query: 170 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYI 228
+T ++ DE +ER+ G N F G VD F K+L YI
Sbjct: 307 RTFVQEDIYDEFVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYI 357
Query: 229 KSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVI 288
+G ++G KL GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+
Sbjct: 358 NTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVV 417
Query: 289 ERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGREL 348
RAN++ YGLA+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GREL
Sbjct: 418 GRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGREL 477
Query: 349 GKAALDEYTELKTVT 363
G+ L YTE+KTVT
Sbjct: 478 GEYGLQAYTEVKTVT 492
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 98/146 (67%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SRT+VQEDIYD F G+PFD +QGPQVD F K+L YI +G ++G
Sbjct: 306 SRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGA 365
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KL GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ Y
Sbjct: 366 KLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTY 425
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GLA+ + T ++D AN + A+ AG+V
Sbjct: 426 GLAAAVFTKDLDKANYLSQALQAGTV 451
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMS 55
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTA 228
>pdb|1ZUM|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|I Chain I, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|J Chain J, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|K Chain K, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|L Chain L, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|2ONM|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|I Chain I, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|J Chain J, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|K Chain K, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|L Chain L, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
Length = 500
Score = 225 bits (573), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 150/233 (64%), Gaps = 17/233 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCF------VCAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEY 590
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L Y
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAY 485
Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 183/357 (51%), Gaps = 46/357 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 229
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 230 ----------AAIASHEDVDKV----------------AFTGSTEIGRVIQVAAGSSNLK 263
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ + + +T ++ DE
Sbjct: 264 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCC----CAGSRTFVQEDIYDE 317
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 318 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEY 356
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRELG+ L Y
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAY 485
>pdb|3INL|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
Length = 500
Score = 224 bits (572), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 150/233 (64%), Gaps = 17/233 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD----MAYYYCFV------CAGSRTYVQE 424
I AA +SNLKRV+LELGGKSP +I +DAD+D A++ F CAGSRT+VQE
Sbjct: 253 IQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQE 312
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
DIYD F G+PFD +QGPQVD F K+L YI +G ++G KL GG
Sbjct: 313 DIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA+ +
Sbjct: 373 IAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVF 432
Query: 545 TTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEY 590
T ++D AN + A+ AG+ V Q+PFGG+K SG GRELG+ L Y
Sbjct: 433 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAY 485
Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 184/357 (51%), Gaps = 46/357 (12%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP +
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAG---- 229
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+ ED+ F S + G + + L
Sbjct: 230 ----------AAIASHEDVDKV----------------AFTGSTEIGRVIQVAAGSSNLK 263
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ +E GGK D + +E F+ F + G +T ++ DE
Sbjct: 264 RVT--LELGGKSPNIIMSDADMDWAVEQAHFALF---FNQGQCSCAGS-RTFVQEDIYDE 317
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAG-SVDAEMFTKVLNYIKSGVEQGGKLE 239
+ER+ G N F G VD F K+L YI +G ++G KL
Sbjct: 318 FVERSVARAKSRVVG---------NPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 240 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 299
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 300 SGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEY 356
+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRELG+ L Y
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAY 485
>pdb|2WME|A Chain A, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|B Chain B, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|D Chain D, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|F Chain F, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|G Chain G, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|H Chain H, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
Length = 490
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 161/290 (55%), Gaps = 25/290 (8%)
Query: 328 QAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNLKRV 387
+A VP F +G GRE+G+ L E+ ++ ++ + S T +MA+A++S+LK V
Sbjct: 194 EAGVPDGVFNVL--TGSGREVGQW-LTEHPLIEKISFTGGTS-TGKKVMASASSSSLKEV 249
Query: 388 SLELGGKSPLVICADADVD-------MAYYYCF--VCA-GSRTYVQEDIYDTFXXXXXXX 437
++ELGGKSPL+I DAD+D MA ++ VC G+R ++ F
Sbjct: 250 TMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLER 309
Query: 438 XXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD----KGYFI 493
GDP D++ GP V VL YI+SG Q +L GG+R D KG ++
Sbjct: 310 VQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYV 369
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
PTVF++ DD I REEIFGPV +I+ + DE I RANDT+YGLA+G+VT ++ A+
Sbjct: 370 APTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHR 429
Query: 554 FAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
H + AG + + P GG+K+SG+GRE G L YT +K+V
Sbjct: 430 AIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSV 479
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 4/143 (2%)
Query: 224 VLNYIKSGVEQGGKLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 279
VL YI+SG Q +L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+
Sbjct: 337 VLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 396
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGF 339
+ DE I RANDT+YGLA+G+VT ++ A+ H + AG WIN + + P GG+
Sbjct: 397 VYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGY 456
Query: 340 KESGIGRELGKAALDEYTELKTV 362
K+SG+GRE G L YT +K+V
Sbjct: 457 KQSGVGRENGLTTLAHYTRIKSV 479
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R ++ F GDP D++ GP V VL YI+SG Q
Sbjct: 290 TRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKA 349
Query: 131 KLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ + DE I RAN
Sbjct: 350 RLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRAN 409
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAG 214
DT+YGLA+G+VT ++ A+ H + AG
Sbjct: 410 DTEYGLAAGVVTQDLARAHRAIHRLEAG 437
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
WK PALAAG ++ KP+E TPLTAL +A + +AG PDGV +VL G G
Sbjct: 161 WKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSG 209
>pdb|2WOX|A Chain A, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct.
pdb|2WOX|B Chain B, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct.
pdb|2WOX|C Chain C, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct.
pdb|2WOX|D Chain D, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct
Length = 489
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 161/290 (55%), Gaps = 25/290 (8%)
Query: 328 QAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNLKRV 387
+A VP F +G GRE+G+ L E+ ++ ++ + S T +MA+A++S+LK V
Sbjct: 193 EAGVPDGVFNVL--TGSGREVGQW-LTEHPLIEKISFTGGTS-TGKKVMASASSSSLKEV 248
Query: 388 SLELGGKSPLVICADADVD-------MAYYYCF--VCA-GSRTYVQEDIYDTFXXXXXXX 437
++ELGGKSPL+I DAD+D MA ++ VC G+R ++ F
Sbjct: 249 TMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLER 308
Query: 438 XXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD----KGYFI 493
GDP D++ GP V VL YI+SG Q +L GG+R D KG ++
Sbjct: 309 VQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYV 368
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
PTVF++ DD I REEIFGPV +I+ + DE I RANDT+YGLA+G+VT ++ A+
Sbjct: 369 APTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHR 428
Query: 554 FAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
H + AG + + P GG+K+SG+GRE G L YT +K+V
Sbjct: 429 AIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSV 478
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 4/143 (2%)
Query: 224 VLNYIKSGVEQGGKLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 279
VL YI+SG Q +L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+
Sbjct: 336 VLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 395
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGF 339
+ DE I RANDT+YGLA+G+VT ++ A+ H + AG WIN + + P GG+
Sbjct: 396 VYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGY 455
Query: 340 KESGIGRELGKAALDEYTELKTV 362
K+SG+GRE G L YT +K+V
Sbjct: 456 KQSGVGRENGLTTLAHYTRIKSV 478
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R ++ F GDP D++ GP V VL YI+SG Q
Sbjct: 289 TRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKA 348
Query: 131 KLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ + DE I RAN
Sbjct: 349 RLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRAN 408
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAG 214
DT+YGLA+G+VT ++ A+ H + AG
Sbjct: 409 DTEYGLAAGVVTQDLARAHRAIHRLEAG 436
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
WK PALAAG ++ KP+E TPLTAL +A + +AG PDGV +VL G G
Sbjct: 160 WKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSG 208
>pdb|3ZQA|A Chain A, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
pdb|3ZQA|B Chain B, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
pdb|3ZQA|C Chain C, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
pdb|3ZQA|D Chain D, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
Length = 490
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 328 QAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNLKRV 387
+A VP F +G GRE+G+ L E+ ++ ++ + S T +MA+A++S+LK V
Sbjct: 194 EAGVPDGVFNVL--TGSGREVGQW-LTEHPLIEKISFTGGTS-TGKKVMASASSSSLKEV 249
Query: 388 SLELGGKSPLVICADADVD-------MAYYYC---FVCAGSRTYVQEDIYDTFXXXXXXX 437
++ELGGKSPL+I DAD+D MA ++ G+R ++ F
Sbjct: 250 TMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVATNGTRVFIHRSQQARFEAKVLER 309
Query: 438 XXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD----KGYFI 493
GDP D++ GP V VL YI+SG Q +L GG+R D KG ++
Sbjct: 310 VQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYV 369
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
PTVF++ DD I REEIFGPV +I+ + DE I RANDT+YGLA+G+VT ++ A+
Sbjct: 370 APTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHR 429
Query: 554 FAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
H + AG + + P GG+K+SG+GRE G L YT +K+V
Sbjct: 430 AIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSV 479
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 4/143 (2%)
Query: 224 VLNYIKSGVEQGGKLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 279
VL YI+SG Q +L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+
Sbjct: 337 VLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 396
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGF 339
+ DE I RANDT+YGLA+G+VT ++ A+ H + AG WIN + + P GG+
Sbjct: 397 VYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGY 456
Query: 340 KESGIGRELGKAALDEYTELKTV 362
K+SG+GRE G L YT +K+V
Sbjct: 457 KQSGVGRENGLTTLAHYTRIKSV 479
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R ++ F GDP D++ GP V VL YI+SG Q
Sbjct: 290 TRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKA 349
Query: 131 KLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ + DE I RAN
Sbjct: 350 RLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRAN 409
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAG 214
DT+YGLA+G+VT ++ A+ H + AG
Sbjct: 410 DTEYGLAAGVVTQDLARAHRAIHRLEAG 437
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
WK PALAAG ++ KP+E TPLTAL +A + +AG PDGV +VL G G
Sbjct: 161 WKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSG 209
>pdb|2WME|C Chain C, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|E Chain E, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
Length = 490
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 328 QAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNLKRV 387
+A VP F +G GRE+G+ L E+ ++ ++ + S T +MA+A++S+LK V
Sbjct: 194 EAGVPDGVFNVL--TGSGREVGQW-LTEHPLIEKISFTGGTS-TGKKVMASASSSSLKEV 249
Query: 388 SLELGGKSPLVICADADVD-------MAYYYC---FVCAGSRTYVQEDIYDTFXXXXXXX 437
++ELGGKSPL+I DAD+D MA ++ G+R ++ F
Sbjct: 250 TMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVXTNGTRVFIHRSQQARFEAKVLER 309
Query: 438 XXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD----KGYFI 493
GDP D++ GP V VL YI+SG Q +L GG+R D KG ++
Sbjct: 310 VQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYV 369
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
PTVF++ DD I REEIFGPV +I+ + DE I RANDT+YGLA+G+VT ++ A+
Sbjct: 370 APTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHR 429
Query: 554 FAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
H + AG + + P GG+K+SG+GRE G L YT +K+V
Sbjct: 430 AIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSV 479
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 4/143 (2%)
Query: 224 VLNYIKSGVEQGGKLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 279
VL YI+SG Q +L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+
Sbjct: 337 VLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 396
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGF 339
+ DE I RANDT+YGLA+G+VT ++ A+ H + AG WIN + + P GG+
Sbjct: 397 VYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGY 456
Query: 340 KESGIGRELGKAALDEYTELKTV 362
K+SG+GRE G L YT +K+V
Sbjct: 457 KQSGVGRENGLTTLAHYTRIKSV 479
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R ++ F GDP D++ GP V VL YI+SG Q
Sbjct: 290 TRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKA 349
Query: 131 KLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ + DE I RAN
Sbjct: 350 RLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRAN 409
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAG 214
DT+YGLA+G+VT ++ A+ H + AG
Sbjct: 410 DTEYGLAAGVVTQDLARAHRAIHRLEAG 437
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
WK PALAAG ++ KP+E TPLTAL +A + +AG PDGV +VL G G
Sbjct: 161 WKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSG 209
>pdb|2O2P|A Chain A, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase
pdb|2O2P|B Chain B, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase
pdb|2O2P|C Chain C, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase
pdb|2O2P|D Chain D, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase
pdb|2O2Q|A Chain A, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadp
pdb|2O2Q|B Chain B, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadp
pdb|2O2Q|C Chain C, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadp
pdb|2O2Q|D Chain D, Crystal Structure Of The C-Terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadp
pdb|2O2R|A Chain A, Crystal Structure Of The C-terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadph
pdb|2O2R|B Chain B, Crystal Structure Of The C-terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadph
pdb|2O2R|C Chain C, Crystal Structure Of The C-terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadph
pdb|2O2R|D Chain D, Crystal Structure Of The C-terminal Domain Of Rat
10'formyltetrahydrofolate Dehydrogenase In Complex With
Nadph
pdb|4GO2|A Chain A, Crystal Structure Of The C-terminal Domain Of
10'formyltetrahydrofolate Dehydrogenase In Complex With
Thio-nadp
pdb|4GO2|B Chain B, Crystal Structure Of The C-terminal Domain Of
10'formyltetrahydrofolate Dehydrogenase In Complex With
Thio-nadp
pdb|4GO2|C Chain C, Crystal Structure Of The C-terminal Domain Of
10'formyltetrahydrofolate Dehydrogenase In Complex With
Thio-nadp
pdb|4GO2|D Chain D, Crystal Structure Of The C-terminal Domain Of
10'formyltetrahydrofolate Dehydrogenase In Complex With
Thio-nadp
Length = 517
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADAD----VDMAYYYCF------VCAGSRTYVQE 424
IM + A SN+K+VSLELGGKSPL+I AD D V M F A R +V+E
Sbjct: 273 IMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEE 332
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I++ F G+P ++ GPQ K++ Y + GV++G L GG
Sbjct: 333 SIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYGLASG 542
+ G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T++GLASG
Sbjct: 393 QVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASG 452
Query: 543 IVTTNIDTANTFAHAINAGSAVVPQ-------APFGGFKESGIGRELGKAALDEYTELKT 595
+ T +I+ A + + AG+ + APFGGFK+SG G++LG+AAL+EY +KT
Sbjct: 453 VFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKT 512
Query: 596 VT 597
VT
Sbjct: 513 VT 514
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 180/381 (47%), Gaps = 78/381 (20%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM------ 54
ML+WK LAAG V++KPA+ TPLTAL A LT +AG P GV+++LPG G +
Sbjct: 194 MLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLS 253
Query: 55 SAPYWRKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDP---------FDKSVQ 105
P RK + + T V + I + G +K+VQ
Sbjct: 254 DHPDVRK-----IGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQ 308
Query: 106 QGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEI 165
G + +V F K N I +G F+E ++ +
Sbjct: 309 MG--MSSVFFNKGENCIAAG-----------------RLFVEESIHN------------- 336
Query: 166 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAE-MFTKV 224
+ + +V+E K G N N G + E K+
Sbjct: 337 ----------QFVQKVVEEVEKMKIG-------------NPLERDTNHGPQNHEAHLRKL 373
Query: 225 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT- 283
+ Y + GV++G L GG + G+F +PTVF++V D IA+EE FGP+ I +F
Sbjct: 374 VEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADG 433
Query: 284 -LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKES 342
+D V+ RAN T++GLASG+ T +I+ A + + AG+V+IN Y APFGGFK+S
Sbjct: 434 DVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQS 493
Query: 343 GIGRELGKAALDEYTELKTVT 363
G G++LG+AAL+EY +KTVT
Sbjct: 494 GFGKDLGEAALNEYLRIKTVT 514
>pdb|3RHR|A Chain A, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase In
Complex With Nadph
pdb|3RHR|B Chain B, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase In
Complex With Nadph
pdb|3RHR|C Chain C, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase In
Complex With Nadph
pdb|3RHR|D Chain D, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase In
Complex With Nadph
pdb|3RHP|A Chain A, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHP|B Chain B, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHP|C Chain C, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHP|D Chain D, Crystal Structure Of The C707a Mutant Of The C-Terminal
Domain Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHQ|A Chain A, Crystal Structure Of The C707a Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|3RHQ|B Chain B, Crystal Structure Of The C707a Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|3RHQ|C Chain C, Crystal Structure Of The C707a Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|3RHQ|D Chain D, Crystal Structure Of The C707a Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
Length = 517
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADAD----VDMAYYYCF------VCAGSRTYVQE 424
IM + A SN+K+VSLELGGKSPL+I AD D V M F A R +V+E
Sbjct: 273 IMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENAIAAGRLFVEE 332
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I++ F G+P ++ GPQ K++ Y + GV++G L GG
Sbjct: 333 SIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYGLASG 542
+ G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T++GLASG
Sbjct: 393 QVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASG 452
Query: 543 IVTTNIDTANTFAHAINAGSAVVPQ-------APFGGFKESGIGRELGKAALDEYTELKT 595
+ T +I+ A + + AG+ + APFGGFK+SG G++LG+AAL+EY +KT
Sbjct: 453 VFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKT 512
Query: 596 VT 597
VT
Sbjct: 513 VT 514
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 183/380 (48%), Gaps = 76/380 (20%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM------ 54
ML+WK LAAG V++KPA+ TPLTAL A LT +AG P GV+++LPG G +
Sbjct: 194 MLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLS 253
Query: 55 SAPYWRKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDP---------FDKSVQ 105
P RK + + T V + I + G +K+VQ
Sbjct: 254 DHPDVRK-----IGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQ 308
Query: 106 QGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEI 165
G + +V F K N I +G F+E ++ +
Sbjct: 309 MG--MSSVFFNKGENAIAAG-----------------RLFVEESIHNQFVQKV------- 342
Query: 166 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVL 225
V+ + K K + +ER DT +G N AH K++
Sbjct: 343 ---VEEVEKMK-IGNPLER--DTNHG-----------PQNHEAH-----------LRKLV 374
Query: 226 NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT-- 283
Y + GV++G L GG + G+F +PTVF++V D IA+EE FGP+ I +F
Sbjct: 375 EYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGD 434
Query: 284 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESG 343
+D V+ RAN T++GLASG+ T +I+ A + + AG+V+IN Y APFGGFK+SG
Sbjct: 435 VDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSG 494
Query: 344 IGRELGKAALDEYTELKTVT 363
G++LG+AAL+EY +KTVT
Sbjct: 495 FGKDLGEAALNEYLRIKTVT 514
>pdb|4GNZ|A Chain A, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GNZ|B Chain B, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GNZ|C Chain C, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GNZ|D Chain D, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GO0|A Chain A, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
pdb|4GO0|B Chain B, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
pdb|4GO0|C Chain C, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
pdb|4GO0|D Chain D, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
Length = 517
Score = 174 bits (442), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADAD----VDMAYYYCFV------CAGSRTYVQE 424
IM + A SN+K+VSLELGGKSPL+I AD D V M F A R +V+E
Sbjct: 273 IMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENSIAAGRLFVEE 332
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I++ F G+P ++ GPQ K++ Y + GV++G L GG
Sbjct: 333 SIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYGLASG 542
+ G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T++GLASG
Sbjct: 393 QVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASG 452
Query: 543 IVTTNIDTANTFAHAINAGSAVVPQ-------APFGGFKESGIGRELGKAALDEYTELKT 595
+ T +I+ A + + AG+ + APFGGFK+SG G++LG+AAL+EY +KT
Sbjct: 453 VFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKT 512
Query: 596 VT 597
VT
Sbjct: 513 VT 514
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 183/380 (48%), Gaps = 76/380 (20%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM------ 54
ML+WK LAAG V++KPA+ TPLTAL A LT +AG P GV+++LPG G +
Sbjct: 194 MLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLS 253
Query: 55 SAPYWRKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDP---------FDKSVQ 105
P RK + + T V + I + G +K+VQ
Sbjct: 254 DHPDVRK-----IGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQ 308
Query: 106 QGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEI 165
G + +V F K N I +G F+E ++ +
Sbjct: 309 MG--MSSVFFNKGENSIAAG-----------------RLFVEESIHNQFVQKV------- 342
Query: 166 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVL 225
V+ + K K + +ER DT +G N AH K++
Sbjct: 343 ---VEEVEKMK-IGNPLER--DTNHG-----------PQNHEAH-----------LRKLV 374
Query: 226 NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT-- 283
Y + GV++G L GG + G+F +PTVF++V D IA+EE FGP+ I +F
Sbjct: 375 EYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGD 434
Query: 284 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESG 343
+D V+ RAN T++GLASG+ T +I+ A + + AG+V+IN Y APFGGFK+SG
Sbjct: 435 VDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSG 494
Query: 344 IGRELGKAALDEYTELKTVT 363
G++LG+AAL+EY +KTVT
Sbjct: 495 FGKDLGEAALNEYLRIKTVT 514
>pdb|2XDR|A Chain A, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
pdb|2XDR|B Chain B, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
pdb|2XDR|C Chain C, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
pdb|2XDR|D Chain D, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
Length = 489
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 160/290 (55%), Gaps = 25/290 (8%)
Query: 328 QAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNLKRV 387
+A VP F +G GRE+G+ L E+ ++ ++ + S T +MA+A++S+LK V
Sbjct: 193 EAGVPDGVFNVL--TGSGREVGQW-LTEHPLIEKISFTGGTS-TGKKVMASASSSSLKEV 248
Query: 388 SLELGGKSPLVICADADVD-------MAYYYCF--VCA-GSRTYVQEDIYDTFXXXXXXX 437
++ LGGKSPL+I DAD+D MA ++ VC G+R ++ F
Sbjct: 249 TMALGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLER 308
Query: 438 XXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD----KGYFI 493
GDP D++ GP V VL YI+SG Q +L GG+R D KG ++
Sbjct: 309 VQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYV 368
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
PTVF++ DD I REEIFGPV +I+ + DE I RANDT+YGLA+G+VT ++ A+
Sbjct: 369 APTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHR 428
Query: 554 FAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
H + AG + + P GG+K+SG+GRE G L YT +K+V
Sbjct: 429 AIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSV 478
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 4/143 (2%)
Query: 224 VLNYIKSGVEQGGKLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 279
VL YI+SG Q +L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+
Sbjct: 336 VLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 395
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGF 339
+ DE I RANDT+YGLA+G+VT ++ A+ H + AG WIN + + P GG+
Sbjct: 396 VYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGY 455
Query: 340 KESGIGRELGKAALDEYTELKTV 362
K+SG+GRE G L YT +K+V
Sbjct: 456 KQSGVGRENGLTTLAHYTRIKSV 478
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R ++ F GDP D++ GP V VL YI+SG Q
Sbjct: 289 TRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKA 348
Query: 131 KLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ + DE I RAN
Sbjct: 349 RLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRAN 408
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAG 214
DT+YGLA+G+VT ++ A+ H + AG
Sbjct: 409 DTEYGLAAGVVTQDLARAHRAIHRLEAG 436
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
WK PALAAG ++ KP+E TPLTAL +A + +AG PDGV +VL G G
Sbjct: 160 WKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSG 208
>pdb|3RHM|A Chain A, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHM|B Chain B, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHM|C Chain C, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHM|D Chain D, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase
pdb|3RHO|A Chain A, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|3RHO|B Chain B, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|3RHO|C Chain C, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|3RHO|D Chain D, Crystal Structure Of The E673q Mutant Of C-Terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
Length = 517
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADAD----VDMAYYYCF------VCAGSRTYVQE 424
IM + A SN+K+VSL+LGGKSPL+I AD D V M F A R +V+E
Sbjct: 273 IMKSCALSNVKKVSLQLGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEE 332
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I++ F G+P ++ GPQ K++ Y + GV++G L GG
Sbjct: 333 SIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYGLASG 542
+ G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T++GLASG
Sbjct: 393 QVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASG 452
Query: 543 IVTTNIDTANTFAHAINAGSAVVPQ-------APFGGFKESGIGRELGKAALDEYTELKT 595
+ T +I+ A + + AG+ + APFGGFK+SG G++LG+AAL+EY +KT
Sbjct: 453 VFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKT 512
Query: 596 VT 597
VT
Sbjct: 513 VT 514
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 180/381 (47%), Gaps = 78/381 (20%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM------ 54
ML+WK LAAG V++KPA+ TPLTAL A LT +AG P GV+++LPG G +
Sbjct: 194 MLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLS 253
Query: 55 SAPYWRKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDP---------FDKSVQ 105
P RK + + T V + I + G +K+VQ
Sbjct: 254 DHPDVRK-----IGFTGSTEVGKHIMKSCALSNVKKVSLQLGGKSPLIIFADCDLNKAVQ 308
Query: 106 QGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEI 165
G + +V F K N I +G F+E ++ +
Sbjct: 309 MG--MSSVFFNKGENCIAAG-----------------RLFVEESIHN------------- 336
Query: 166 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAE-MFTKV 224
+ + +V+E K G N N G + E K+
Sbjct: 337 ----------QFVQKVVEEVEKMKIG-------------NPLERDTNHGPQNHEAHLRKL 373
Query: 225 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT- 283
+ Y + GV++G L GG + G+F +PTVF++V D IA+EE FGP+ I +F
Sbjct: 374 VEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADG 433
Query: 284 -LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKES 342
+D V+ RAN T++GLASG+ T +I+ A + + AG+V+IN Y APFGGFK+S
Sbjct: 434 DVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQS 493
Query: 343 GIGRELGKAALDEYTELKTVT 363
G G++LG+AAL+EY +KTVT
Sbjct: 494 GFGKDLGEAALNEYLRIKTVT 514
>pdb|3RHJ|A Chain A, Crystal Structure Of The E673a Mutant Of The C-Terminal
Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In
Complex With Co-Purified Nadp
pdb|3RHJ|B Chain B, Crystal Structure Of The E673a Mutant Of The C-Terminal
Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In
Complex With Co-Purified Nadp
pdb|3RHJ|C Chain C, Crystal Structure Of The E673a Mutant Of The C-Terminal
Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In
Complex With Co-Purified Nadp
pdb|3RHJ|D Chain D, Crystal Structure Of The E673a Mutant Of The C-Terminal
Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In
Complex With Co-Purified Nadp
Length = 517
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 137/242 (56%), Gaps = 19/242 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADAD----VDMAYYYCF------VCAGSRTYVQE 424
IM + A SN+K+VSL LGGKSPL+I AD D V M F A R +V+E
Sbjct: 273 IMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEE 332
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I++ F G+P ++ GPQ K++ Y + GV++G L GG
Sbjct: 333 SIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYGLASG 542
+ G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T++GLASG
Sbjct: 393 QVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASG 452
Query: 543 IVTTNIDTANTFAHAINAGSAVVPQ-------APFGGFKESGIGRELGKAALDEYTELKT 595
+ T +I+ A + + AG+ + APFGGFK+SG G++LG+AAL+EY +KT
Sbjct: 453 VFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKT 512
Query: 596 VT 597
VT
Sbjct: 513 VT 514
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 180/381 (47%), Gaps = 78/381 (20%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM------ 54
ML+WK LAAG V++KPA+ TPLTAL A LT +AG P GV+++LPG G +
Sbjct: 194 MLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLS 253
Query: 55 SAPYWRKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDP---------FDKSVQ 105
P RK + + T V + I + G +K+VQ
Sbjct: 254 DHPDVRK-----IGFTGSTEVGKHIMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQ 308
Query: 106 QGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEI 165
G + +V F K N I +G F+E ++ +
Sbjct: 309 MG--MSSVFFNKGENCIAAG-----------------RLFVEESIHN------------- 336
Query: 166 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAE-MFTKV 224
+ + +V+E K G N N G + E K+
Sbjct: 337 ----------QFVQKVVEEVEKMKIG-------------NPLERDTNHGPQNHEAHLRKL 373
Query: 225 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT- 283
+ Y + GV++G L GG + G+F +PTVF++V D IA+EE FGP+ I +F
Sbjct: 374 VEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADG 433
Query: 284 -LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKES 342
+D V+ RAN T++GLASG+ T +I+ A + + AG+V+IN Y APFGGFK+S
Sbjct: 434 DVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQS 493
Query: 343 GIGRELGKAALDEYTELKTVT 363
G G++LG+AAL+EY +KTVT
Sbjct: 494 GFGKDLGEAALNEYLRIKTVT 514
>pdb|3RHL|A Chain A, Crystal Structure Of The E673aC707A DOUBLE MUTANT OF THE
C-Terminal Domain Of Rat 10'formyltetrahydrofolate
Dehydrogenase In Complex With Co-Purified Nadp
pdb|3RHL|B Chain B, Crystal Structure Of The E673aC707A DOUBLE MUTANT OF THE
C-Terminal Domain Of Rat 10'formyltetrahydrofolate
Dehydrogenase In Complex With Co-Purified Nadp
pdb|3RHL|C Chain C, Crystal Structure Of The E673aC707A DOUBLE MUTANT OF THE
C-Terminal Domain Of Rat 10'formyltetrahydrofolate
Dehydrogenase In Complex With Co-Purified Nadp
pdb|3RHL|D Chain D, Crystal Structure Of The E673aC707A DOUBLE MUTANT OF THE
C-Terminal Domain Of Rat 10'formyltetrahydrofolate
Dehydrogenase In Complex With Co-Purified Nadp
Length = 517
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 137/242 (56%), Gaps = 19/242 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADAD----VDMAYYYCF------VCAGSRTYVQE 424
IM + A SN+K+VSL LGGKSPL+I AD D V M F A R +V+E
Sbjct: 273 IMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENAIAAGRLFVEE 332
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I++ F G+P ++ GPQ K++ Y + GV++G L GG
Sbjct: 333 SIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYGLASG 542
+ G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T++GLASG
Sbjct: 393 QVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASG 452
Query: 543 IVTTNIDTANTFAHAINAGSAVVPQ-------APFGGFKESGIGRELGKAALDEYTELKT 595
+ T +I+ A + + AG+ + APFGGFK+SG G++LG+AAL+EY +KT
Sbjct: 453 VFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKT 512
Query: 596 VT 597
VT
Sbjct: 513 VT 514
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 183/380 (48%), Gaps = 76/380 (20%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM------ 54
ML+WK LAAG V++KPA+ TPLTAL A LT +AG P GV+++LPG G +
Sbjct: 194 MLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLS 253
Query: 55 SAPYWRKSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDP---------FDKSVQ 105
P RK + + T V + I + G +K+VQ
Sbjct: 254 DHPDVRK-----IGFTGSTEVGKHIMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQ 308
Query: 106 QGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEI 165
G + +V F K N I +G F+E ++ +
Sbjct: 309 MG--MSSVFFNKGENAIAAG-----------------RLFVEESIHNQFVQKV------- 342
Query: 166 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVL 225
V+ + K K + +ER DT +G N AH K++
Sbjct: 343 ---VEEVEKMK-IGNPLER--DTNHG-----------PQNHEAH-----------LRKLV 374
Query: 226 NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT-- 283
Y + GV++G L GG + G+F +PTVF++V D IA+EE FGP+ I +F
Sbjct: 375 EYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGD 434
Query: 284 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESG 343
+D V+ RAN T++GLASG+ T +I+ A + + AG+V+IN Y APFGGFK+SG
Sbjct: 435 VDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSG 494
Query: 344 IGRELGKAALDEYTELKTVT 363
G++LG+AAL+EY +KTVT
Sbjct: 495 FGKDLGEAALNEYLRIKTVT 514
>pdb|4I8P|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
Zea Mays (zmamadh1a)
pdb|4I8P|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
Zea Mays (zmamadh1a)
Length = 520
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 169/380 (44%), Gaps = 75/380 (19%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M WK PALAAGC +LKP+E +T L +A + ++ G P GV++++ G GP +
Sbjct: 184 MATWKIAPALAAGCTAVLKPSELASVTCLELADICKEVGLPSGVLNIVTGLGPDAG---- 239
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+PL+ P VD V FT
Sbjct: 240 ----APLSAH-------------------------------------PDVDKVAFT---- 254
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPT-----------VFSNVTDDFKIAREEIFGPV 169
G E G K ++P VF +V D K +FG
Sbjct: 255 ---------GSFETGKKIMASAAPMVKPVTLELGGKSPIVVFDDVDID-KAVEWTLFGCF 304
Query: 170 QT--IIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAE-MFTKVLN 226
T I T +I K+ NI ++ G V +E + K+
Sbjct: 305 WTNGQICSATSRLLIHTKIAKKFNERMVAWAKNIKVSDPLEEGCRLGPVVSEGQYEKIKK 364
Query: 227 YIKSGVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL 284
+I + QG + GG R +KG+FIEPT+ +++T +I REE+FGPV + +F T
Sbjct: 365 FISNAKSQGATILTGGVRPAHLEKGFFIEPTIITDITTSMEIWREEVFGPVLCVKEFSTE 424
Query: 285 DEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGI 344
DE IE ANDT+YGLA +++ + + + I+AG +W+NC Q QAP+GG K SG
Sbjct: 425 DEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGCIWVNCSQPCFCQAPWGGNKRSGF 484
Query: 345 GRELGKAALDEYTELKTVTE 364
GRELG+ +D Y +K VTE
Sbjct: 485 GRELGEGGIDNYLSVKQVTE 504
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 19/249 (7%)
Query: 369 SYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYY----CF-----VC-AGS 418
S+ + + A+AA +K V+LELGGKSP+V+ D D+D A + CF +C A S
Sbjct: 256 SFETGKKIMASAAPMVKPVTLELGGKSPIVVFDDVDIDKAVEWTLFGCFWTNGQICSATS 315
Query: 419 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGK 478
R + I F DP ++ + GP V + K+ +I + QG
Sbjct: 316 RLLIHTKIAKKFNERMVAWAKNIKVSDPLEEGCRLGPVVSEGQYEKIKKFISNAKSQGAT 375
Query: 479 LEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 536
+ GG R +KG+FIEPT+ +++T +I REE+FGPV + +F T DE IE ANDT+
Sbjct: 376 ILTGGVRPAHLEKGFFIEPTIITDITTSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQ 435
Query: 537 YGLASGIVTTNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDE 589
YGLA +++ + + + I+AG V QAP+GG K SG GRELG+ +D
Sbjct: 436 YGLAGAVISGDRERCQRLSEEIDAGCIWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDN 495
Query: 590 YTELKTVTE 598
Y +K VTE
Sbjct: 496 YLSVKQVTE 504
>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
Length = 517
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 137/241 (56%), Gaps = 20/241 (8%)
Query: 376 MAAAAASNLKRVSLELGGKSPLVICADADVDMA---------YYYCFVCA-GSRTYVQED 425
+AAAAA +LK V++ELGGKSP+++ DAD++ A Y VC+ G+R +VQ+
Sbjct: 244 VAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKK 303
Query: 426 IYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG-- 483
F GDP D + GP V KVL+YI+ G +G L GG
Sbjct: 304 AKARFLENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGI 363
Query: 484 -KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
+G +++PTVF++VTDD IAREEIFGPV ++ F DEV+ RAN T++GLA G
Sbjct: 364 PNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANATEFGLAGG 423
Query: 543 IVTTNIDTANTFAHAINAGSAVVP-------QAPFGGFKESGIGRELGKAALDEYTELKT 595
+ T ++ A+ + AG+ + + PFGG K+SG GRE AAL+ Y+ELKT
Sbjct: 424 VFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFGRENSAAALEHYSELKT 483
Query: 596 V 596
V
Sbjct: 484 V 484
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 100/165 (60%), Gaps = 10/165 (6%)
Query: 223 KVLNYIKSGVEQGGKLEAGG---KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 279
KVL+YI+ G +G L GG +G +++PTVF++VTDD IAREEIFGPV ++
Sbjct: 342 KVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVL 401
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGF 339
F DEV+ RAN T++GLA G+ T ++ A+ + AG++WIN Y + PFGG
Sbjct: 402 DFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGS 461
Query: 340 KESGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNL 384
K+SG GRE AAL+ Y+ELKTV Y S + A A NL
Sbjct: 462 KQSGFGRENSAAALEHYSELKTV-------YVSTGKVDAPYAENL 499
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 133/305 (43%), Gaps = 67/305 (21%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG---YGPM------ 54
WK PAL AG ++ KP+E TPL AL +A + +AG P G+ +V+ G GP+
Sbjct: 169 WKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDTGPLLVNHPD 228
Query: 55 --------SAPYWRKSCL----------------SPLA-------------------YRS 71
S P RK SP+ Y S
Sbjct: 229 VAKVSLTGSVPTGRKVAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSS 288
Query: 72 --------RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIK 123
R +VQ+ F GDP D + GP V KVL+YI+
Sbjct: 289 GQVCSNGTRVFVQKKAKARFLENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIE 348
Query: 124 SGVEQGGKLEAGG---KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 180
G +G L GG +G +++PTVF++VTDD IAREEIFGPV ++ F DE
Sbjct: 349 KGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDE 408
Query: 181 VIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEA 240
V+ RAN T++GLA G+ T ++ A+ + AG+ ++ N + GG ++
Sbjct: 409 VLARANATEFGLAGGVFTADLARAHRVVDGLEAGT----LWINTYNLCPVEIPFGGSKQS 464
Query: 241 GGKRK 245
G R+
Sbjct: 465 GFGRE 469
>pdb|3TY7|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase Family Protein
From Staphylococcus Aureus
pdb|3TY7|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase Family Protein
From Staphylococcus Aureus
Length = 478
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 135/242 (55%), Gaps = 19/242 (7%)
Query: 374 SIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGSRTYVQ 423
S + AA + K+VSLELGGKSP ++ D D+ A VC AG+R V
Sbjct: 232 SKIXEKAAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVP 291
Query: 424 EDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG 483
I D F G+P + Q GP + + F +V NYI G+E+G +L GG
Sbjct: 292 NKIKDAFLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGG 351
Query: 484 KRKGD---KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 540
K + KGYF PT+F NV + IA+EEIFGPV ++I + LDE I+ ANDTKYGLA
Sbjct: 352 PGKPEGLEKGYFARPTIFINVDNQXTIAQEEIFGPVXSVITYNDLDEAIQIANDTKYGLA 411
Query: 541 SGIVTTNIDTANTFAHAINAGSAVV------PQAPFGGFKESGIGRELGKAALDEYTELK 594
++ + +T + A +I AG+ + P PFGG+K+SG+GRE G ++E+ E+K
Sbjct: 412 GYVIGKDKETLHKVARSIEAGTVEINEAGRKPDLPFGGYKQSGLGREWGDYGIEEFLEVK 471
Query: 595 TV 596
++
Sbjct: 472 SI 473
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 4/150 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD---KGYFIEPTVFSNVTDDFKIAREEIF 272
+ + F +V NYI G+E+G +L GG K + KGYF PT+F NV + IA+EEIF
Sbjct: 325 ISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQXTIAQEEIF 384
Query: 273 GPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVP 332
GPV ++I + LDE I+ ANDTKYGLA ++ + +T + A +I AG+V IN P
Sbjct: 385 GPVXSVITYNDLDEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEIN-EAGRKP 443
Query: 333 QAPFGGFKESGIGRELGKAALDEYTELKTV 362
PFGG+K+SG+GRE G ++E+ E+K++
Sbjct: 444 DLPFGGYKQSGLGREWGDYGIEEFLEVKSI 473
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R V I D F G+P + Q GP + F +V NYI G+E+G
Sbjct: 286 TRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYINKGIEEGA 345
Query: 131 KLEAGGKRKGD---KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 187
+L GG K + KGYF PT+F NV + IA+EEIFGPV ++I + LDE I+ AND
Sbjct: 346 ELFYGGPGKPEGLEKGYFARPTIFINVDNQXTIAQEEIFGPVXSVITYNDLDEAIQIAND 405
Query: 188 TKYGLASGIVTTNIDTANTFAHAINAGSVD 217
TKYGLA ++ + +T + A +I AG+V+
Sbjct: 406 TKYGLAGYVIGKDKETLHKVARSIEAGTVE 435
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
+ K A AAG PV+LKP+E+TP A+ +A + + G P GV +++ G G
Sbjct: 157 SLKLAAAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGDG 206
>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
Length = 503
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 145/275 (52%), Gaps = 22/275 (8%)
Query: 342 SGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNLKRVSLELGGKSPLVICA 401
+G+G E G A+L + ++ ++ + S T IM AA +K VSLELGGKSP+V+
Sbjct: 215 TGLGHEAG-ASLASHPDVDKISFTG-SSATGSKIMTTAA-QLVKPVSLELGGKSPIVVFE 271
Query: 402 DADVDMAYYY----CF-----VC-AGSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSV 451
D D+D + CF +C A SR V E I F DP ++
Sbjct: 272 DVDLDKVAEWTVFGCFFTNGQICSATSRLIVHESIAVEFVDKLVKWAENIKISDPLEEGC 331
Query: 452 QQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAR 509
+ GP V + KVLN I S +G + GG+R KGYF+EPT+ ++VT +I R
Sbjct: 332 RLGPIVSEAQYKKVLNCISSAKSEGATILTGGRRPEHLKKGYFVEPTIITDVTTSMQIWR 391
Query: 510 EEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSAVVP--- 566
EE+FGPV + F T +E I ANDT YGL S +++ +++ + A+ AG +
Sbjct: 392 EEVFGPVLAVKTFSTEEEAINLANDTHYGLGSAVMSNDLERCERLSKALQAGIVWINCAQ 451
Query: 567 ----QAPFGGFKESGIGRELGKAALDEYTELKTVT 597
QAP+GG K SG GRELG+ L+ Y +K VT
Sbjct: 452 PSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVT 486
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 169/388 (43%), Gaps = 93/388 (23%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M WK PALAAGC +LKP+E +T L + + ++ G P GV++++ G G +
Sbjct: 167 MATWKIAPALAAGCAAILKPSELASVTCLELGEICKEVGLPRGVLNIVTGLGHEAG---- 222
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFT---- 116
S+ P VD + FT
Sbjct: 223 -----------------------------------------ASLASHPDVDKISFTGSSA 241
Query: 117 ---KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGP----- 168
K++ V+ LE GGK P V D K+A +FG
Sbjct: 242 TGSKIMTTAAQLVKPVS-LELGGK---------SPIVVFEDVDLDKVAEWTVFGCFFTNG 291
Query: 169 ----------VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDA 218
V I + +D++++ A NI ++ G + +
Sbjct: 292 QICSATSRLIVHESIAVEFVDKLVKWAE-------------NIKISDPLEEGCRLGPIVS 338
Query: 219 E-MFTKVLNYIKSGVEQGGKLEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAREEIFGPV 275
E + KVLN I S +G + GG+R KGYF+EPT+ ++VT +I REE+FGPV
Sbjct: 339 EAQYKKVLNCISSAKSEGATILTGGRRPEHLKKGYFVEPTIITDVTTSMQIWREEVFGPV 398
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAP 335
+ F T +E I ANDT YGL S +++ +++ + A+ AG VWINC Q QAP
Sbjct: 399 LAVKTFSTEEEAINLANDTHYGLGSAVMSNDLERCERLSKALQAGIVWINCAQPSFIQAP 458
Query: 336 FGGFKESGIGRELGKAALDEYTELKTVT 363
+GG K SG GRELG+ L+ Y +K VT
Sbjct: 459 WGGIKRSGFGRELGEWGLENYLSVKQVT 486
>pdb|3IWJ|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From
Pisum Sativum (Psamadh2)
pdb|3IWJ|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From
Pisum Sativum (Psamadh2)
Length = 503
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 145/276 (52%), Gaps = 22/276 (7%)
Query: 342 SGIGRELGKAALDEYTELKTVTESPLRSYTSHSIMAAAAASNLKRVSLELGGKSPLVICA 401
+G+G E G A L + ++ V + S T IM AAA +K VSLELGGKSPLV+
Sbjct: 215 TGLGPEAG-APLATHPDVDKVAFTG-SSATGSKIMTAAA-QLVKPVSLELGGKSPLVVFE 271
Query: 402 DADVD----MAYYYCF-----VC-AGSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSV 451
D D+D A + CF +C A SR + E I F DP ++
Sbjct: 272 DVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIATEFLNRIVKWIKNIKISDPLEEGC 331
Query: 452 QQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAR 509
+ GP V + K+L ++ + +G + GG R KG+FIEPT+ ++VT + +I R
Sbjct: 332 RLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWR 391
Query: 510 EEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSAVV---- 565
EE+FGPV + F T +E I+ ANDT YGL + +++ +++ A AG V
Sbjct: 392 EEVFGPVLCVKTFSTEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQ 451
Query: 566 ---PQAPFGGFKESGIGRELGKAALDEYTELKTVTE 598
QAP+GG K SG GRELG+ LD Y +K VT+
Sbjct: 452 PCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTQ 487
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 170/376 (45%), Gaps = 67/376 (17%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M WK PALAAGC +LKP+E LT L + + ++ G P GV+++L G GP +
Sbjct: 167 MATWKVAPALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLNILTGLGPEAG---- 222
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFT---- 116
+PLA P VD V FT
Sbjct: 223 ----APLATH-------------------------------------PDVDKVAFTGSSA 241
Query: 117 ---KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQT-- 171
K++ V+ LE GGK P V D K A IFG T
Sbjct: 242 TGSKIMTAAAQLVKPVS-LELGGK---------SPLVVFEDVDLDKAAEWAIFGCFWTNG 291
Query: 172 IIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAE-MFTKVLNYIKS 230
I T ++ + T++ NI ++ G V +E + K+L ++ +
Sbjct: 292 QICSATSRLILHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFVSN 351
Query: 231 GVEQGGKLEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVI 288
+G + GG R KG+FIEPT+ ++VT + +I REE+FGPV + F T +E I
Sbjct: 352 AKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFSTEEEAI 411
Query: 289 ERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGREL 348
+ ANDT YGL + +++ +++ A AG VW+NC Q QAP+GG K SG GREL
Sbjct: 412 DLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFGREL 471
Query: 349 GKAALDEYTELKTVTE 364
G+ LD Y +K VT+
Sbjct: 472 GEWGLDNYLSVKQVTQ 487
>pdb|4A0M|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
pdb|4A0M|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
pdb|4A0M|C Chain C, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
pdb|4A0M|D Chain D, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
Length = 496
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 165/376 (43%), Gaps = 67/376 (17%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M WK PALAAGC +LKP+E +T L + + G P GV+++L G GP +
Sbjct: 164 MATWKIAPALAAGCTAVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAG---- 219
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFT---- 116
+PL P VD + FT
Sbjct: 220 ----APLVSH-------------------------------------PDVDKIAFTGSSA 238
Query: 117 ---KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 173
KV+ V+ LE GGK P V D K+ IFG T
Sbjct: 239 TGSKVMASAAQLVKPV-TLELGGK---------SPIVVFEDVDIDKVVEWTIFGCFWTNG 288
Query: 174 KFKTLDEVIERANDTKYGLASGIV--TTNIDTANTFAHAINAGSVDAE-MFTKVLNYIKS 230
+ + + +V T NI ++ F G V ++ + K++ +I +
Sbjct: 289 QICSATSRLLVHESIAAEFVDKLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFIST 348
Query: 231 GVEQGGKLEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVI 288
+G + GG R KGY+IEPT+ ++++ +I +EE+FGPV + F + DE I
Sbjct: 349 AKSEGATILYGGSRPEHLKKGYYIEPTIVTDISTSMQIWKEEVFGPVLCVKTFSSEDEAI 408
Query: 289 ERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGREL 348
ANDT+YGLA+ + + +++ A+ G+VW+NC Q QAP+GG K SG GREL
Sbjct: 409 ALANDTEYGLAAAVFSNDLERCERITKALEVGAVWVNCSQPCFVQAPWGGIKRSGFGREL 468
Query: 349 GKAALDEYTELKTVTE 364
G+ + Y +K VT+
Sbjct: 469 GEWGIQNYLNIKQVTQ 484
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 19/249 (7%)
Query: 369 SYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYY----CF-----VC-AGS 418
S + S + A+AA +K V+LELGGKSP+V+ D D+D + CF +C A S
Sbjct: 236 SSATGSKVMASAAQLVKPVTLELGGKSPIVVFEDVDIDKVVEWTIFGCFWTNGQICSATS 295
Query: 419 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGK 478
R V E I F DPF++ + GP + + K++ +I + +G
Sbjct: 296 RLLVHESIAAEFVDKLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGAT 355
Query: 479 LEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 536
+ GG R KGY+IEPT+ ++++ +I +EE+FGPV + F + DE I ANDT+
Sbjct: 356 ILYGGSRPEHLKKGYYIEPTIVTDISTSMQIWKEEVFGPVLCVKTFSSEDEAIALANDTE 415
Query: 537 YGLASGIVTTNIDTANTFAHAINAGSAVVP-------QAPFGGFKESGIGRELGKAALDE 589
YGLA+ + + +++ A+ G+ V QAP+GG K SG GRELG+ +
Sbjct: 416 YGLAAAVFSNDLERCERITKALEVGAVWVNCSQPCFVQAPWGGIKRSGFGRELGEWGIQN 475
Query: 590 YTELKTVTE 598
Y +K VT+
Sbjct: 476 YLNIKQVTQ 484
>pdb|4I9B|A Chain A, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum
Lycopersium (slamadh1) With A Thiohemiacetal
Intermediate
pdb|4I9B|B Chain B, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum
Lycopersium (slamadh1) With A Thiohemiacetal
Intermediate
Length = 517
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 146/290 (50%), Gaps = 36/290 (12%)
Query: 344 IGRELG--KAALDEYTELKTVTESPLRSY-------------TSHSIMAAAAASNLKRVS 388
I RE+G AL+ T L PL S+ T IM AAA +K VS
Sbjct: 213 ICREIGLPSGALNILTGLGPEAGGPLASHPHVDKISFTGSGPTGSKIMTAAAQL-VKPVS 271
Query: 389 LELGGKSPLVICADAD-VDMAYYYCF---------VC-AGSRTYVQEDIYDTFXXXXXXX 437
LELGGKSP+V+ D D +D+A + VC A SR VQE+I F
Sbjct: 272 LELGGKSPIVVFDDIDNLDIAAEWTLFGIFANTGQVCSATSRLIVQENIASAFMDRLLKW 331
Query: 438 XXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD--KGYFIEP 495
DP ++ + GP V A + KVL +I + +G + GG+R KGY+++P
Sbjct: 332 TKNIKISDPLEEDCKLGPVVSAGQYEKVLKFISNAKSEGATILCGGERPQHLKKGYYVQP 391
Query: 496 TVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFA 555
T+ ++V +I +EE+FGPV + FKT ++ IE ANDTKYGL + +++ ++ F
Sbjct: 392 TIITDVNTSMEIWKEEVFGPVLCVKTFKTEEQAIELANDTKYGLGAAVMSKDVKRCERFT 451
Query: 556 HA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTE 598
A IN + P+GG K SG GR+LGK L+ + +K VTE
Sbjct: 452 KAFQTGIIWINCSQPTFNELPWGGKKRSGFGRDLGKWGLENFLNIKQVTE 501
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 175/397 (44%), Gaps = 84/397 (21%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M WK PALAAGC +LKP+E +T L + + ++ G P G +++L G GP +
Sbjct: 180 MAIWKVAPALAAGCAAILKPSELASITCLELGEICREIGLPSGALNILTGLGPEAG---- 235
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFT---- 116
PLA P VD + FT
Sbjct: 236 ----GPLASH-------------------------------------PHVDKISFTGSGP 254
Query: 117 ---KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIARE-EIFGPVQTI 172
K++ V+ LE GGK P V + D+ IA E +FG
Sbjct: 255 TGSKIMTAAAQLVKPVS-LELGGK---------SPIVVFDDIDNLDIAAEWTLFG----- 299
Query: 173 IKFKTLDEVIERAND--TKYGLASGIV------TTNIDTANTFAHAINAGSV-DAEMFTK 223
F +V + + +AS + T NI ++ G V A + K
Sbjct: 300 -IFANTGQVCSATSRLIVQENIASAFMDRLLKWTKNIKISDPLEEDCKLGPVVSAGQYEK 358
Query: 224 VLNYIKSGVEQGGKLEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKF 281
VL +I + +G + GG+R KGY+++PT+ ++V +I +EE+FGPV + F
Sbjct: 359 VLKFISNAKSEGATILCGGERPQHLKKGYYVQPTIITDVNTSMEIWKEEVFGPVLCVKTF 418
Query: 282 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKE 341
KT ++ IE ANDTKYGL + +++ ++ F A G +WINC Q + P+GG K
Sbjct: 419 KTEEQAIELANDTKYGLGAAVMSKDVKRCERFTKAFQTGIIWINCSQPTFNELPWGGKKR 478
Query: 342 SGIGRELGKAALDEYTELKTVTE----SPLRSYTSHS 374
SG GR+LGK L+ + +K VTE PL Y S S
Sbjct: 479 SGFGRDLGKWGLENFLNIKQVTEYTSAEPLAFYKSPS 515
>pdb|3U4J|A Chain A, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Sinorhizobium Meliloti
pdb|3U4J|B Chain B, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Sinorhizobium Meliloti
pdb|3U4J|C Chain C, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Sinorhizobium Meliloti
pdb|3U4J|D Chain D, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Sinorhizobium Meliloti
Length = 528
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 165/366 (45%), Gaps = 68/366 (18%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSPLA 68
A+ +GC V+LKP+E T T++ +A L ++AG PDGV +V+ GYG
Sbjct: 185 AIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPDGVFNVVTGYG---------------- 228
Query: 69 YRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNY-IKSGVE 127
DP + + + P VD V FT + K G
Sbjct: 229 -----------------------------DPAGQVLAEDPNVDXVAFTGSVRVGTKLGEI 259
Query: 128 QGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL-------DE 180
++ G G KG I IA Q I L D
Sbjct: 260 AARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDA 319
Query: 181 VIERANDTKYGLASGIVT---TNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGK 237
+ ER D +A G T I + AHA KV +Y+ +G+ G +
Sbjct: 320 LXERLLDISRKVAFGDPLNERTKIGAXISEAHA-----------EKVHSYVTAGITSGAE 368
Query: 238 LEAGGKRKG-DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 296
L GG+R G + G + PTVF+ VT D IAREEIFGPV + + FKT DE + AN T++
Sbjct: 369 LLLGGERIGREAGLYYAPTVFAGVTPDXSIAREEIFGPVLSTLTFKTADEAVALANATEF 428
Query: 297 GLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEY 356
GL++ + +TN++TA I AG WIN P+ P GG+K+SG+GRELG+ DEY
Sbjct: 429 GLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGRELGRYGFDEY 488
Query: 357 TELKTV 362
++ K V
Sbjct: 489 SQFKGV 494
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 18/235 (7%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVDM--------AYYYCFVC--AGSRTYVQEDIYDT 429
AA +KRV LELGGK P ++ ADAD+D Y+ C +GSR VQE I D
Sbjct: 260 AARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDA 319
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG-D 488
GDP ++ + G + KV +Y+ +G+ G +L GG+R G +
Sbjct: 320 LXERLLDISRKVAFGDPLNERTKIGAXISEAHAEKVHSYVTAGITSGAELLLGGERIGRE 379
Query: 489 KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNI 548
G + PTVF+ VT D IAREEIFGPV + + FKT DE + AN T++GL++ + +TN+
Sbjct: 380 AGLYYAPTVFAGVTPDXSIAREEIFGPVLSTLTFKTADEAVALANATEFGLSASVWSTNL 439
Query: 549 DTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
+TA I AG + P+ P GG+K+SG+GRELG+ DEY++ K V
Sbjct: 440 ETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGRELGRYGFDEYSQFKGV 494
>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
Length = 503
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 23/240 (9%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VCA-GSRTYVQEDIYDT 429
+A +K V+LELGGKSPL+I D +++ A VC G+R +VQ +I
Sbjct: 253 SAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQ 312
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKR---- 485
F GDP + G + KVL ++ ++G ++ GG+
Sbjct: 313 FLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPS 372
Query: 486 --KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
K GYF+ P V N DD +EEIFGPV +++ F T +EV++RAN+T +GLASG+
Sbjct: 373 DPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGV 432
Query: 544 VTTNIDTANTFAHAINAGSAVVP-------QAPFGGFKESGIGRELGKAALDEYTELKTV 596
T +I A+ A + AG+ + + PFGG+K SG GRE G+A +D Y++LKTV
Sbjct: 433 FTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGRENGQATVDYYSQLKTV 492
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 172/376 (45%), Gaps = 72/376 (19%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKS 62
AWK PALA G V+ KP+ TP+T + +A + +AG P G+++V+ G A
Sbjct: 173 AWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQG----GAETGSLL 228
Query: 63 CLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYI 122
C P + F SV G +V M K + ++
Sbjct: 229 CHHPNVAKVS---------------------------FTGSVPTGKKVME-MSAKTVKHV 260
Query: 123 KSGVEQGGK----------LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTI 172
+E GGK LE + + + V +N T F VQ
Sbjct: 261 T--LELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVF----------VQRE 308
Query: 173 IKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGV 232
I + L+EV++R +V + T I+ +D KVL ++
Sbjct: 309 IMPQFLEEVVKRTKAI-------VVGDPLLTETRMGGLISKPQLD-----KVLGFVAQAK 356
Query: 233 EQGGKLEAGGKR------KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 286
++G ++ GG+ K GYF+ P V N DD +EEIFGPV +++ F T +E
Sbjct: 357 KEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEE 416
Query: 287 VIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGR 346
V++RAN+T +GLASG+ T +I A+ A + AG+ +IN Y + PFGG+K SG GR
Sbjct: 417 VLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGR 476
Query: 347 ELGKAALDEYTELKTV 362
E G+A +D Y++LKTV
Sbjct: 477 ENGQATVDYYSQLKTV 492
>pdb|2D4E|A Chain A, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|B Chain B, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|C Chain C, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|D Chain D, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
Length = 515
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 137/253 (54%), Gaps = 27/253 (10%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMAY------YYCF----VCAGSRTYVQE 424
I+ AA +LKR+S ELGGKSP ++ ADAD++ A + F A SR V+E
Sbjct: 256 IVMRNAADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEE 315
Query: 425 DIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I++ F G P D + GP + E +VL Y+++G +G +L GG+
Sbjct: 316 KIFEDFVGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGE 375
Query: 485 R-----KGD---KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 536
R +G+ +G ++ PTVF + KIA+EEIFGPV I FK +E + +ANDTK
Sbjct: 376 RAKTSFRGEDLSRGNYLLPTVFVG-ENHMKIAQEEIFGPVLVAIPFKDEEEALRKANDTK 434
Query: 537 YGLASGIVTTNIDTANTFAHAINAGSAVVPQ-------APFGGFKESGIGRELGKAALDE 589
YGLA+ + T +++ A+ A + AG + PFGG K SG RE G ALD
Sbjct: 435 YGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDRREGGTYALDF 494
Query: 590 YTELKTVTESPLR 602
YT+LKT+ PLR
Sbjct: 495 YTDLKTIA-LPLR 506
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 10/161 (6%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKR-----KGD---KGYFIEPTVFSNVTDDFKIA 267
+ E +VL Y+++G +G +L GG+R +G+ +G ++ PTVF + KIA
Sbjct: 348 IHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHMKIA 406
Query: 268 REEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCY 327
+EEIFGPV I FK +E + +ANDTKYGLA+ + T +++ A+ A + AG V++N +
Sbjct: 407 QEEIFGPVLVAIPFKDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSH 466
Query: 328 QAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLR 368
PFGG K SG RE G ALD YT+LKT+ PLR
Sbjct: 467 NVRHLPTPFGGVKGSGDRREGGTYALDFYTDLKTIA-LPLR 506
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 9/154 (5%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR V+E I++ F G P D + GP + +VL Y+++G +G
Sbjct: 309 SRLLVEEKIFEDFVGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKREGA 368
Query: 131 KLEAGGKR-----KGD---KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVI 182
+L GG+R +G+ +G ++ PTVF + KIA+EEIFGPV I FK +E +
Sbjct: 369 RLLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHMKIAQEEIFGPVLVAIPFKDEEEAL 427
Query: 183 ERANDTKYGLASGIVTTNIDTANTFAHAINAGSV 216
+ANDTKYGLA+ + T +++ A+ A + AG V
Sbjct: 428 RKANDTKYGLAAYVFTRDLERAHRLALELEAGMV 461
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSC 63
W+ PALA G V+LKPAE +P TA +A + ++A P GV +++ G+G +
Sbjct: 181 WRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFNLVQGFGEEAGAALVAHP 240
Query: 64 LSPL 67
L PL
Sbjct: 241 LVPL 244
>pdb|4I8Q|A Chain A, Structure Of The Aminoaldehyde Dehydrogenase 1 E260a
Mutant From Solanum Lycopersicum (slamadh1-e260a)
Length = 514
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 145/290 (50%), Gaps = 36/290 (12%)
Query: 344 IGRELG--KAALDEYTELKTVTESPLRSY-------------TSHSIMAAAAASNLKRVS 388
I RE+G AL+ T L PL S+ T IM AAA +K VS
Sbjct: 213 ICREIGLPSGALNILTGLGPEAGGPLASHPHVDKISFTGSGPTGSKIMTAAA-QLVKPVS 271
Query: 389 LELGGKSPLVICADAD-VDMAYYYCF---------VC-AGSRTYVQEDIYDTFXXXXXXX 437
L LGGKSP+V+ D D +D+A + VC A SR VQE+I F
Sbjct: 272 LALGGKSPIVVFDDIDNLDIAAEWTLFGIFANTGQVCSATSRLIVQENIASAFMDRLLKW 331
Query: 438 XXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD--KGYFIEP 495
DP ++ + GP V A + KVL +I + +G + GG+R KGY+++P
Sbjct: 332 TKNIKISDPLEEDCKLGPVVSAGQYEKVLKFISNAKSEGATILCGGERPQHLKKGYYVQP 391
Query: 496 TVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFA 555
T+ ++V +I +EE+FGPV + FKT ++ IE ANDTKYGL + +++ ++ F
Sbjct: 392 TIITDVNTSMEIWKEEVFGPVLCVKTFKTEEQAIELANDTKYGLGAAVMSKDVKRCERFT 451
Query: 556 HA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTE 598
A IN + P+GG K SG GR+LGK L+ + +K VTE
Sbjct: 452 KAFQTGIIWINCSQPTFNELPWGGKKRSGFGRDLGKWGLENFLNIKQVTE 501
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 174/401 (43%), Gaps = 96/401 (23%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M WK PALAAGC +LKP+E +T L + + ++ G P G +++L G GP +
Sbjct: 180 MAIWKVAPALAAGCAAILKPSELASITCLELGEICREIGLPSGALNILTGLGPEAG---- 235
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFT---- 116
PLA P VD + FT
Sbjct: 236 ----GPLASH-------------------------------------PHVDKISFTGSGP 254
Query: 117 ---KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIARE-EIFG----- 167
K++ V+ L GGK P V + D+ IA E +FG
Sbjct: 255 TGSKIMTAAAQLVKPVS-LALGGK---------SPIVVFDDIDNLDIAAEWTLFGIFANT 304
Query: 168 ----------PVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVD 217
VQ I +D +++ + K ++ ++ ++AG
Sbjct: 305 GQVCSATSRLIVQENIASAFMDRLLKWTKNIK-------ISDPLEEDCKLGPVVSAGQ-- 355
Query: 218 AEMFTKVLNYIKSGVEQGGKLEAGGKRKGD--KGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+ KVL +I + +G + GG+R KGY+++PT+ ++V +I +EE+FGPV
Sbjct: 356 ---YEKVLKFISNAKSEGATILCGGERPQHLKKGYYVQPTIITDVNTSMEIWKEEVFGPV 412
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAP 335
+ FKT ++ IE ANDTKYGL + +++ ++ F A G +WINC Q + P
Sbjct: 413 LCVKTFKTEEQAIELANDTKYGLGAAVMSKDVKRCERFTKAFQTGIIWINCSQPTFNELP 472
Query: 336 FGGFKESGIGRELGKAALDEYTELKTVTE----SPLRSYTS 372
+GG K SG GR+LGK L+ + +K VTE PL Y S
Sbjct: 473 WGGKKRSGFGRDLGKWGLENFLNIKQVTEYTSAEPLAFYKS 513
>pdb|3ED6|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3ED6|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3FG0|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
Length = 520
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 21/232 (9%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVDMA--------YYYC-FVC-AGSRTYVQEDIYDT 429
AA+N+ ++LELGGK+P +I DAD ++A Y++ VC AGSR VQ I D
Sbjct: 269 AANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDK 328
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKR--KG 487
F G+ FD + GP + E K+ +Y+ +G + GGKR +
Sbjct: 329 FEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRD 388
Query: 488 D--KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVT 545
D G F EPTV +N +I +EE+FGPV T+ F+T E I+ AND+ YGLA + +
Sbjct: 389 DLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAGAVFS 448
Query: 546 TNIDTANTFAHAINAGSAVV-------PQAPFGGFKESGIGRELGKAALDEY 590
+I A A+ + G+ + QAP+GG+K+SGIGRELGK L+EY
Sbjct: 449 KDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEY 500
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 101/193 (52%), Gaps = 18/193 (9%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSV-DAEMFTKVLNY 227
VQ IK K +I+R K G N F G V E K+ +Y
Sbjct: 321 VQNSIKDKFEQALIDRVKKIKLG-------------NGFDADTEMGPVISTEHRNKIESY 367
Query: 228 IKSGVEQGGKLEAGGKR--KGD--KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT 283
+ +G + GGKR + D G F EPTV +N +I +EE+FGPV T+ F+T
Sbjct: 368 MDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFET 427
Query: 284 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESG 343
E I+ AND+ YGLA + + +I A A+ + G+VWIN + QAP+GG+K+SG
Sbjct: 428 EQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSG 487
Query: 344 IGRELGKAALDEY 356
IGRELGK L+EY
Sbjct: 488 IGRELGKEGLEEY 500
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR VQ I D F G+ FD + GP + K+ +Y+ +G
Sbjct: 317 SRILVQNSIKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGA 376
Query: 131 KLEAGGKR--KGD--KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+ GGKR + D G F EPTV +N +I +EE+FGPV T+ F+T E I+ AN
Sbjct: 377 TIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLAN 436
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAGSV 216
D+ YGLA + + +I A A+ + G+V
Sbjct: 437 DSIYGLAGAVFSKDIGKAQRVANKLKLGTV 466
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
+WK PALA GC +++KP+E TPLT + V L ++ GFP G I+++ G G
Sbjct: 188 SWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLILGAG 237
>pdb|3B4W|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Aldehyde
Dehydrogenase Complexed With Nad+
Length = 495
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 122/235 (51%), Gaps = 18/235 (7%)
Query: 380 AASNLKRVSLELGGKSPLVICADAD----VDMAYYYCFVCAG------SRTYVQEDIYDT 429
AA LK +LELGGKS +I D D + M + + AG +R YD
Sbjct: 244 AAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDE 303
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG-- 487
G P D + Q GP + + T+V YI G+E+G +L GG R
Sbjct: 304 IVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGL 363
Query: 488 DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTN 547
D G+FI+PTVF++V + IA+EEIFGPV II + T ++ I AND+ YGLA + TT+
Sbjct: 364 DNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEEDAIAIANDSVYGLAGSVWTTD 423
Query: 548 IDTANTFAHAINAGS------AVVPQAPFGGFKESGIGRELGKAALDEYTELKTV 596
+ + I G+ A P +PFGG+K SGIGRE G ++ +T+ K+V
Sbjct: 424 VPKGIKISQQIRTGTYGINWYAFDPGSPFGGYKNSGIGRENGPEGVEHFTQQKSV 478
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 118/273 (43%), Gaps = 62/273 (22%)
Query: 5 KWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG---------YGP-- 53
K PAL AGC ++LKPA +TPLTA +A + + G P+GV+SV+PG P
Sbjct: 166 KIAPALLAGCTIVLKPAAETPLTANALAEVFAEVGLPEGVLSVVPGGIETGQALTSNPDI 225
Query: 54 ----------------MSAPYWRKSCLSPLAYRSRTYVQEDI------------------ 79
A K C L +S + ED+
Sbjct: 226 DMFTFTGSSAVGREVGRRAAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAG 285
Query: 80 ---------------YDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKS 124
YD G P D + Q GP + T+V YI
Sbjct: 286 QGCVNQTRILAPRSRYDEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAK 345
Query: 125 GVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVI 182
G+E+G +L GG R D G+FI+PTVF++V + IA+EEIFGPV II + T ++ I
Sbjct: 346 GIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEEDAI 405
Query: 183 ERANDTKYGLASGIVTTNIDTANTFAHAINAGS 215
AND+ YGLA + TT++ + I G+
Sbjct: 406 AIANDSVYGLAGSVWTTDVPKGIKISQQIRTGT 438
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 3/143 (2%)
Query: 222 TKVLNYIKSGVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTII 279
T+V YI G+E+G +L GG R D G+FI+PTVF++V + IA+EEIFGPV II
Sbjct: 337 TRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAII 396
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGF 339
+ T ++ I AND+ YGLA + TT++ + I G+ IN Y A P +PFGG+
Sbjct: 397 PYDTEEDAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWY-AFDPGSPFGGY 455
Query: 340 KESGIGRELGKAALDEYTELKTV 362
K SGIGRE G ++ +T+ K+V
Sbjct: 456 KNSGIGRENGPEGVEHFTQQKSV 478
>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 19/232 (8%)
Query: 381 ASNLKRVSLELGGKSPLVICADADVDMAYYYCF-----------VCAGSRTYVQEDIYDT 429
A ++K+VSLELGG +P ++ DAD+D A VCA +R YVQ+ +YD
Sbjct: 245 AKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCA-NRLYVQDGVYDR 303
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDK 489
F GD D V GP +D + KV +I +E+G ++ GGK
Sbjct: 304 FAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERG 363
Query: 490 GYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNID 549
G F +PT+ +V + K+++EE FGP+ + +FK +VI +ANDT++GLA+ ++
Sbjct: 364 GNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLS 423
Query: 550 TANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
A IN G APFGG K SG+GRE K +++Y E+K
Sbjct: 424 RVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIK 475
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 81/145 (55%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+D + KV +I +E+G ++ GGK G F +PT+ +V + K+++EE FGP+
Sbjct: 331 IDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPL 390
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAP 335
+ +FK +VI +ANDT++GLA+ ++ A+ G V IN AP
Sbjct: 391 APLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAP 450
Query: 336 FGGFKESGIGRELGKAALDEYTELK 360
FGG K SG+GRE K +++Y E+K
Sbjct: 451 FGGIKASGLGREGSKYGIEDYLEIK 475
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R YVQ+ +YD F GD D V GP +D KV +I +E+G
Sbjct: 292 NRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGA 351
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
++ GGK G F +PT+ +V + K+++EE FGP+ + +FK +VI +ANDT++
Sbjct: 352 RVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEF 411
Query: 191 GLAS 194
GLA+
Sbjct: 412 GLAA 415
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
M+ K GPALAAGC ++LKPA QTP +AL +A L +AG P GV +V+ G
Sbjct: 161 MITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTG 210
>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|B Chain B, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|D Chain D, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 19/232 (8%)
Query: 381 ASNLKRVSLELGGKSPLVICADADVDMAYYYCF-----------VCAGSRTYVQEDIYDT 429
A ++K+VSLELGG +P ++ DAD+D A VCA +R YVQ+ +YD
Sbjct: 245 AKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCA-NRLYVQDGVYDR 303
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDK 489
F GD D V GP +D + KV +I +E+G ++ GGK
Sbjct: 304 FAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERG 363
Query: 490 GYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNID 549
G F +PT+ +V + K+++EE FGP+ + +FK +VI +ANDT++GLA+ ++
Sbjct: 364 GNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLS 423
Query: 550 TANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
A IN G APFGG K SG+GRE K +++Y E+K
Sbjct: 424 RVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIK 475
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 81/145 (55%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+D + KV +I +E+G ++ GGK G F +PT+ +V + K+++EE FGP+
Sbjct: 331 IDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPL 390
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAP 335
+ +FK +VI +ANDT++GLA+ ++ A+ G V IN AP
Sbjct: 391 APLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAP 450
Query: 336 FGGFKESGIGRELGKAALDEYTELK 360
FGG K SG+GRE K +++Y E+K
Sbjct: 451 FGGIKASGLGREGSKYGIEDYLEIK 475
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R YVQ+ +YD F GD D V GP +D KV +I +E+G
Sbjct: 292 NRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGA 351
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
++ GGK G F +PT+ +V + K+++EE FGP+ + +FK +VI +ANDT++
Sbjct: 352 RVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEF 411
Query: 191 GLAS 194
GLA+
Sbjct: 412 GLAA 415
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
M+ K GPALAAGC ++LKPA QTP +AL +A L +AG P GV +V+ G
Sbjct: 161 MITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTG 210
>pdb|3RJL|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|F Chain F, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|G Chain G, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|H Chain H, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
Length = 538
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 21/237 (8%)
Query: 382 SNLKRVSLELGGKSPLVICADADVDMAYYYCF----------VCAGSRTYVQEDIYDTFX 431
++LK+V E+GGK +V+ D D+++A F AGSR V E +YD
Sbjct: 279 THLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVL 338
Query: 432 XXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 491
G+P V GP +D F K+++YI+ G E+G +L +GGK KGY
Sbjct: 339 KRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEG-RLVSGGKGDDSKGY 397
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 551
FIEPT+F+++ ++ +EEIFGPV K + DE +E AN+T+YGL ++T N D
Sbjct: 398 FIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHI 457
Query: 552 NTFAHAINAGS---------AVVPQAPFGGFKESGIGRELGKAA-LDEYTELKTVTE 598
N + G+ A+V PFGGFK SG + G L + + KT++E
Sbjct: 458 NRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISE 514
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 163/358 (45%), Gaps = 43/358 (12%)
Query: 10 LAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSPLAY 69
+ G V+LKPA P+ A + +++G P GV++ +PG G Y L
Sbjct: 197 IVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDY--------LVD 248
Query: 70 RSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQG 129
+T + TF F+++ + P +V+ E G
Sbjct: 249 HPKTSII-----TFTGSREVGTRI------FERAAKVQP--GQTHLKQVI------AEMG 289
Query: 130 GKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 189
GK D IE S T F A ++ + ++ K DEV++R +
Sbjct: 290 GKDTVVVDEDCD----IELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEIT 345
Query: 190 YGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKG 249
G D+A+ + + +D F K+++YI+ G E+G +L +GGK KG
Sbjct: 346 ESKKVG----EPDSADVYMGPV----IDQASFNKIMDYIEIGKEEG-RLVSGGKGDDSKG 396
Query: 250 YFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDT 309
YFIEPT+F+++ ++ +EEIFGPV K + DE +E AN+T+YGL ++T N D
Sbjct: 397 YFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDH 456
Query: 310 ANTFAHAINAGSVWI--NCYQAVVPQAPFGGFKESGIGRELGKAA-LDEYTELKTVTE 364
N + G+++ NC A+V PFGGFK SG + G L + + KT++E
Sbjct: 457 INRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISE 514
>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
Escherichia Coli
Length = 479
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 123/246 (50%), Gaps = 18/246 (7%)
Query: 369 SYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGS 418
S ++ + A AA N+ +V LELGGK+P ++ DAD+++A VC
Sbjct: 230 SVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAE 289
Query: 419 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKS-VQQGPQVDAEMFTKVLNYIKSGVEQGG 477
R YVQ+ IYD F G+P +++ + GP ++A +V + VE+G
Sbjct: 290 RVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGA 349
Query: 478 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 537
++ GGK KGY+ PT+ +V + I EE FGPV ++ F TL+E I AND+ Y
Sbjct: 350 RVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEEAISMANDSDY 409
Query: 538 GLASGIVTTNIDTANTFAHAINAGSAVVPQAPF-------GGFKESGIGRELGKAALDEY 590
GL S I T N++ A + G + + F G+++SGIG GK L EY
Sbjct: 410 GLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEY 469
Query: 591 TELKTV 596
+ + V
Sbjct: 470 LQTQVV 475
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 153/367 (41%), Gaps = 54/367 (14%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
++A K PAL G +++KP+E TP A+ A + + G P GV +++ G
Sbjct: 158 LIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLG---------- 207
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDA---VMFTK 117
R T QE G+P V V A +M T
Sbjct: 208 ---------RGETVGQE-----------------LAGNPKVAMVSMTGSVSAGEKIMATA 241
Query: 118 VLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAR--EEIFGPVQTIIKF 175
N K +E GGK A D ++ V S V + ++ E ++ ++
Sbjct: 242 AKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVY------VQK 295
Query: 176 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQG 235
D+ + R + + G D A INA +++ +V + VE+G
Sbjct: 296 GIYDQFVNRLGEAMQAVQFGNPAERNDIA--MGPLINAAALE-----RVEQKVARAVEEG 348
Query: 236 GKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 295
++ GGK KGY+ PT+ +V + I EE FGPV ++ F TL+E I AND+
Sbjct: 349 ARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEEAISMANDSD 408
Query: 296 YGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDE 355
YGL S I T N++ A + G +IN Q G+++SGIG GK L E
Sbjct: 409 YGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHE 468
Query: 356 YTELKTV 362
Y + + V
Sbjct: 469 YLQTQVV 475
>pdb|3EK1|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|C Chain C, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|D Chain D, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|E Chain E, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|F Chain F, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|G Chain G, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
pdb|3EK1|H Chain H, Crystal Structure Of Aldehyde Dehydrogenase From Brucella
Melitensis Biovar Abortus 2308
Length = 504
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 135/277 (48%), Gaps = 26/277 (9%)
Query: 342 SGIGRELGKAALDEYTELKTVTESPLRSYTS-HSIMAAAAASNLKRVSLELGGKSPLVI- 399
+G RE+G E T TV + T ++ A A +KR+SLELGG +P ++
Sbjct: 232 TGKAREIGA----ELTSNDTVRKLSFTGSTEVGRLLMAQCAPTIKRISLELGGNAPFIVF 287
Query: 400 -----CADADVDMAYYY-----CFVCAGSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDK 449
A D M Y VCA +R YVQ +YD F G+ +
Sbjct: 288 DDADLDAAVDGAMVSKYRNAGQTCVCA-NRIYVQRGVYDKFAEKLAAKVKELKVGNGTEP 346
Query: 450 SVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAR 509
V GP ++ + TKV +I+ V +G KL GGK G G F EP + + VT D +A+
Sbjct: 347 GVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELG--GLFFEPGILTGVTSDMLVAK 404
Query: 510 EEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAI-------NAGS 562
EE FGP+ + F T +EVI +ANDT +GLA+ T N A + A+ N G
Sbjct: 405 EETFGPLAPLFAFDTEEEVIAQANDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGL 464
Query: 563 AVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTES 599
APFGG K+SG+GRE K ++EY E K + +
Sbjct: 465 ISNEVAPFGGVKQSGLGREGSKYGIEEYLETKYICSA 501
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
++ + TKV +I+ V +G KL GGK G G F EP + + VT D +A+EE FGP+
Sbjct: 354 IEEKAITKVKAHIEDAVSKGAKLITGGKELG--GLFFEPGILTGVTSDMLVAKEETFGPL 411
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAP 335
+ F T +EVI +ANDT +GLA+ T N A + A+ G V N AP
Sbjct: 412 APLFAFDTEEEVIAQANDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAP 471
Query: 336 FGGFKESGIGRELGKAALDEYTELKTVTES 365
FGG K+SG+GRE K ++EY E K + +
Sbjct: 472 FGGVKQSGLGREGSKYGIEEYLETKYICSA 501
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R YVQ +YD F G+ + V GP ++ TKV +I+ V +G
Sbjct: 315 NRIYVQRGVYDKFAEKLAAKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGA 374
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KL GGK G G F EP + + VT D +A+EE FGP+ + F T +EVI +ANDT +
Sbjct: 375 KLITGGKELG--GLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQANDTIF 432
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GLA+ T N A + A+ G V
Sbjct: 433 GLAAYFYTENFSRAIRVSEALEYGMV 458
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
M+ K PALAAGC ++++PA+ TPLTAL + L ++AG P GV+ ++ G
Sbjct: 184 MITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTG 233
>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Ternary Complex With Product Bound (L)-Lactate
And Nadh.
pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Binary Complex With Nadph
Length = 479
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 18/246 (7%)
Query: 369 SYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGS 418
S ++ + A AA N+ +V LELGGK+P ++ DAD+++A VC
Sbjct: 230 SVSAGEKIMATAAKNITKVXLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAE 289
Query: 419 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKS-VQQGPQVDAEMFTKVLNYIKSGVEQGG 477
R YVQ+ IYD F G+P +++ + GP ++A +V + VE+G
Sbjct: 290 RVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGA 349
Query: 478 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 537
++ GGK KGY+ PT+ +V + I EE FGPV ++ F TL++ I AND+ Y
Sbjct: 350 RVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDY 409
Query: 538 GLASGIVTTNIDTANTFAHAINAGSAVVPQAPF-------GGFKESGIGRELGKAALDEY 590
GL S I T N++ A + G + + F G+++SGIG GK L EY
Sbjct: 410 GLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEY 469
Query: 591 TELKTV 596
+ + V
Sbjct: 470 LQTQVV 475
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 153/367 (41%), Gaps = 54/367 (14%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
++A K PAL G +++KP+E TP A+ A + + G P GV +++ G
Sbjct: 158 LIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLG---------- 207
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDA---VMFTK 117
R T QE G+P V V A +M T
Sbjct: 208 ---------RGETVGQE-----------------LAGNPKVAMVSMTGSVSAGEKIMATA 241
Query: 118 VLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAR--EEIFGPVQTIIKF 175
N K +E GGK A D ++ V S V + ++ E ++ ++
Sbjct: 242 AKNITKVXLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVY------VQK 295
Query: 176 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQG 235
D+ + R + + G D A INA +++ +V + VE+G
Sbjct: 296 GIYDQFVNRLGEAMQAVQFGNPAERNDIA--MGPLINAAALE-----RVEQKVARAVEEG 348
Query: 236 GKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 295
++ GGK KGY+ PT+ +V + I EE FGPV ++ F TL++ I AND+
Sbjct: 349 ARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSD 408
Query: 296 YGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDE 355
YGL S I T N++ A + G +IN Q G+++SGIG GK L E
Sbjct: 409 YGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHE 468
Query: 356 YTELKTV 362
Y + + V
Sbjct: 469 YLQTQVV 475
>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
Length = 479
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 18/246 (7%)
Query: 369 SYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGS 418
S ++ + A AA N+ +V LELGGK+P ++ DAD+++A VC
Sbjct: 230 SVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAE 289
Query: 419 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKS-VQQGPQVDAEMFTKVLNYIKSGVEQGG 477
R YVQ+ IYD F G+P +++ + GP ++A +V + VE+G
Sbjct: 290 RVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGA 349
Query: 478 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 537
++ GGK KGY+ PT+ +V + I EE FGPV ++ F TL++ I AND+ Y
Sbjct: 350 RVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDY 409
Query: 538 GLASGIVTTNIDTANTFAHAINAGSAVVPQAPF-------GGFKESGIGRELGKAALDEY 590
GL S I T N++ A + G + + F G+++SGIG GK L EY
Sbjct: 410 GLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEY 469
Query: 591 TELKTV 596
+ + V
Sbjct: 470 LQTQVV 475
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 153/367 (41%), Gaps = 54/367 (14%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
++A K PAL G +++KP+E TP A+ A + + G P GV +++ G
Sbjct: 158 LIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLG---------- 207
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDA---VMFTK 117
R T QE G+P V V A +M T
Sbjct: 208 ---------RGETVGQE-----------------LAGNPKVAMVSMTGSVSAGEKIMATA 241
Query: 118 VLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAR--EEIFGPVQTIIKF 175
N K +E GGK A D ++ V S V + ++ E ++ ++
Sbjct: 242 AKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVY------VQK 295
Query: 176 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQG 235
D+ + R + + G D A INA +++ +V + VE+G
Sbjct: 296 GIYDQFVNRLGEAMQAVQFGNPAERNDIA--MGPLINAAALE-----RVEQKVARAVEEG 348
Query: 236 GKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 295
++ GGK KGY+ PT+ +V + I EE FGPV ++ F TL++ I AND+
Sbjct: 349 ARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSD 408
Query: 296 YGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDE 355
YGL S I T N++ A + G +IN Q G+++SGIG GK L E
Sbjct: 409 YGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHE 468
Query: 356 YTELKTV 362
Y + + V
Sbjct: 469 YLQTQVV 475
>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
Length = 538
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 26/280 (9%)
Query: 343 GIGRELGKAALDE-YTELKTVTESP---LRSYTSHSIMAAAAASNLKRVSLELGGKSPLV 398
G G E+G +D T L T T S +R Y +++ ++LKRV +E+GGK +V
Sbjct: 237 GSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQ-NHLKRVIVEMGGKDTVV 295
Query: 399 ICADADVDMAYYYCFVCA----------GSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFD 448
+ DAD+D+A V A GSR + +D+YD GDP +
Sbjct: 296 VDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNLTVGDPTN 355
Query: 449 KSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIA 508
+ GP +D + F K+++YI+ G ++G +L GG+ G+FI+PT+ +++ + I
Sbjct: 356 RDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIM 414
Query: 509 REEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTN---IDTANTFAHA------IN 559
+EEIFGPV K D +E AN+T+YGL ++T N I+ A H N
Sbjct: 415 QEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRN 474
Query: 560 AGSAVVPQAPFGGFKESGIGRELGKAA-LDEYTELKTVTE 598
A+V PFGGFK SG + G L + + KTV+E
Sbjct: 475 CTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTVSE 514
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 154/360 (42%), Gaps = 47/360 (13%)
Query: 10 LAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYW-RKSCLSPLA 68
+ G V+LKPA TP+ A + + AG P GVI+ +PG G Y S +
Sbjct: 197 IVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLIT 256
Query: 69 YRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSG-VE 127
+ V +Y+ A + N++K VE
Sbjct: 257 FTGSKDVGVRLYER-----------------------------AAVVRPGQNHLKRVIVE 287
Query: 128 QGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 187
GGK R D E + S F + ++ + +I DEV+E+
Sbjct: 288 MGGKDTVVVDRDADLDLAAESILVSA----FGFSGQKCSAGSRAVIHKDVYDEVLEKT-- 341
Query: 188 TKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD 247
LA + + + + + +D + F K+++YI+ G ++G +L GG+
Sbjct: 342 --VALAKNLTVGDPTNRDNYMGPV----IDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSS 394
Query: 248 KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNI 307
G+FI+PT+ +++ + I +EEIFGPV K D +E AN+T+YGL ++T N
Sbjct: 395 TGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVITRNR 454
Query: 308 DTANTFAHAINAGSVWI--NCYQAVVPQAPFGGFKESGIGRELGKAA-LDEYTELKTVTE 364
+ G+++ NC A+V PFGGFK SG + G L + + KTV+E
Sbjct: 455 AHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTVSE 514
>pdb|3IFG|A Chain A, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|B Chain B, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|C Chain C, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|D Chain D, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|E Chain E, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|F Chain F, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|G Chain G, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|H Chain H, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|I Chain I, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|J Chain J, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|K Chain K, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|L Chain L, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|M Chain M, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|N Chain N, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|O Chain O, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|P Chain P, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFH|Q Chain Q, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|R Chain R, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|S Chain S, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|T Chain T, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|U Chain U, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|V Chain V, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|W Chain W, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|X Chain X, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|Y Chain Y, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|Z Chain Z, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|1 Chain 1, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|2 Chain 2, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|3 Chain 3, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|4 Chain 4, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|5 Chain 5, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|6 Chain 6, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
Length = 484
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 19/238 (7%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF-----------VCAGSRTYVQ 423
++ A +A +K+++LELGG +P ++ DAD+D A VC +R +V
Sbjct: 242 LLMAQSAPTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCT-NRFFVH 300
Query: 424 EDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG 483
E +YD F G + GP ++ KV ++I + +G L GG
Sbjct: 301 ERVYDAFADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIADALAKGASLMTGG 360
Query: 484 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
KR F EPTV + V D +A+EE FGP+ + +F + +E++ ANDT++GLA+ +
Sbjct: 361 KRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAYL 420
Query: 544 VTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
+ +I A A IN G APFGG K+SG+GRE +D+Y +K
Sbjct: 421 YSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIK 478
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 197 VTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTV 256
V ++ T IN +V KV ++I + +G L GGKR F EPTV
Sbjct: 320 VGRGTESGATLGPLINEAAVK-----KVESHIADALAKGASLMTGGKRHALGHGFFEPTV 374
Query: 257 FSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHA 316
+ V D +A+EE FGP+ + +F + +E++ ANDT++GLA+ + + +I A A
Sbjct: 375 LTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAYLYSRDIGRVWRVAEA 434
Query: 317 INAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTELK 360
+ G V IN APFGG K+SG+GRE +D+Y +K
Sbjct: 435 LEYGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIK 478
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R +V E +YD F G + GP ++ KV ++I + +G
Sbjct: 295 NRFFVHERVYDAFADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIADALAKGA 354
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
L GGKR F EPTV + V D +A+EE FGP+ + +F + +E++ ANDT++
Sbjct: 355 SLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEF 414
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GLA+ + + +I A A+ G V
Sbjct: 415 GLAAYLYSRDIGRVWRVAEALEYGMV 440
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
M+A K GPALAAGCP+++KPAE TP +AL +A L ++AG P GV+SV+ G
Sbjct: 164 MIARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIG 213
>pdb|3I44|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From
Bartonella Henselae At 2.0a Resolution
Length = 497
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 18/236 (7%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVD---MAYYYCFVCAG------SRTYVQEDIYDTF 430
A++ LKRV LELGGK +I ADAD+D +CF +G +R V++ IYD
Sbjct: 260 ASNTLKRVCLELGGKGANIIFADADIDALQRGVRHCFYNSGQSCNAPTRMLVEQAIYDKA 319
Query: 431 XXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK---RKG 487
G GP V E + K+ + I+SG+++G L GG
Sbjct: 320 IKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGM 379
Query: 488 DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTN 547
++GY++ PTVF++V +I REEIFGPV +++ F T DE + ANDT+YGL + I + +
Sbjct: 380 ERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTEDEAVTLANDTEYGLTNYIQSQD 439
Query: 548 IDTANTFAHAINAGSAVV--PQAP----FGGFKESGIGRELGKAALDEYTELKTVT 597
A + +G V + P FGG K SG RE G + E+ + K ++
Sbjct: 440 RSKCRRIAAQVRSGMVEVNGHELPGGSYFGGVKFSGRAREGGLWGIKEFLDTKAIS 495
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGK---RKGDKGYFIEPTVFSNVTDDFKIAREEIF 272
V E + K+ + I+SG+++G L GG ++GY++ PTVF++V +I REEIF
Sbjct: 346 VSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIF 405
Query: 273 GPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVP 332
GPV +++ F T DE + ANDT+YGL + I + + A + +G V +N ++ +P
Sbjct: 406 GPVLSLLPFNTEDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNGHE--LP 463
Query: 333 QAP-FGGFKESGIGRELGKAALDEYTELKTVT 363
FGG K SG RE G + E+ + K ++
Sbjct: 464 GGSYFGGVKFSGRAREGGLWGIKEFLDTKAIS 495
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+SC +P +R V++ IYD G GP V + K+ +
Sbjct: 301 QSCNAP----TRMLVEQAIYDKAIKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQD 356
Query: 121 YIKSGVEQGGKLEAGGK---RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT 177
I+SG+++G L GG ++GY++ PTVF++V +I REEIFGPV +++ F T
Sbjct: 357 LIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNT 416
Query: 178 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVD 217
DE + ANDT+YGL + I + + A + +G V+
Sbjct: 417 EDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVE 456
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 4 WKWG---------PALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM 54
W W PAL AGC ++LKP+E PL+A+ A + +A P GV +++ G G
Sbjct: 171 WNWPMNQVTLKVIPALLAGCTMVLKPSEIAPLSAMLFAEILDEAALPSGVFNLINGDGAN 230
Query: 55 SAPY 58
Y
Sbjct: 231 VGSY 234
>pdb|3K2W|A Chain A, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|B Chain B, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|C Chain C, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|D Chain D, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|E Chain E, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|F Chain F, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|G Chain G, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|H Chain H, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
Length = 497
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 126/265 (47%), Gaps = 28/265 (10%)
Query: 360 KTVTESPLRSYTSHSIMAAA-------AASNLKRVSLELGGKSPLVICADADVDMA---- 408
+T+ ESP+ + + A +A + V LELGGK+P+V+ DAD+D A
Sbjct: 220 QTLCESPITKMITMTGSTVAGKQIYKTSAEYMTPVMLELGGKAPMVVMDDADLDKAAEDA 279
Query: 409 ----YYYC-FVCAG-SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMF 462
+ C VC R YV +YD F GDP D Q GP+ +
Sbjct: 280 LWGRFANCGQVCTCVERLYVHASVYDEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREI 339
Query: 463 TKVLNYIKSGVEQGGKLEAGGKRKGDKGY----FIEPTVFSNVTDDFKIAREEIFGPVQT 518
+ + + ++QG + GGK +G+ + EPTV +V D + EE FGP+
Sbjct: 340 DNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILP 399
Query: 519 IIKFKTLDEVIERANDTKYGLASGIVT---TNIDTANTFAHA----INAGSAVVPQAPFG 571
I+K ++++ IE ND+ YGL++ + T NI+ A + IN G Q
Sbjct: 400 IVKVSSMEQAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHN 459
Query: 572 GFKESGIGRELGKAALDEYTELKTV 596
G+K+SG G E GK L++Y E KTV
Sbjct: 460 GWKQSGFGGEDGKFGLEQYLEKKTV 484
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 151/377 (40%), Gaps = 79/377 (20%)
Query: 5 KWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCL 64
K GPAL G ++LKP ++TPL + + ++AG PDGV++V+ G G + + C
Sbjct: 168 KIGPALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGVLNVINGTGSVVG---QTLCE 224
Query: 65 SP----LAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
SP + T + IY T A T V+
Sbjct: 225 SPITKMITMTGSTVAGKQIYKT----------------------------SAEYMTPVM- 255
Query: 121 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTI-------- 172
LE GGK P V + D K A + ++G
Sbjct: 256 -----------LELGGKA---------PMVVMDDADLDKAAEDALWGRFANCGQVCTCVE 295
Query: 173 ---IKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIK 229
+ DE + + GL G +D + N +D + + +
Sbjct: 296 RLYVHASVYDEFMAKFLPLVKGLKVG---DPMDADSQMGPKCNQREID-----NIDHIVH 347
Query: 230 SGVEQGGKLEAGGKRKGDKGY----FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 285
++QG + GGK +G+ + EPTV +V D + EE FGP+ I+K +++
Sbjct: 348 EAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSME 407
Query: 286 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIG 345
+ IE ND+ YGL++ + T + N + G V+IN Q G+K+SG G
Sbjct: 408 QAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFG 467
Query: 346 RELGKAALDEYTELKTV 362
E GK L++Y E KTV
Sbjct: 468 GEDGKFGLEQYLEKKTV 484
>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
Length = 485
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 119/244 (48%), Gaps = 22/244 (9%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVDMAY----YYCFVCAG------SRTYVQEDIYDT 429
A KR++LELGG +P + +DADVD A + F+ G +R V +D+YD
Sbjct: 243 AGRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDE 302
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDK 489
F GD D GP ++ K L I+ G +L GKR G+
Sbjct: 303 FVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKRVGN- 361
Query: 490 GYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNID 549
+ P VF ++ KIA+ E+F P+ TIIK + E I+ ANDT+YGL+S + T++++
Sbjct: 362 --VLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLE 419
Query: 550 TANTFAHAINAGSAVV--------PQAPFGGFKESGIGRELGKAALDEYTELKTVT-ESP 600
FA I++G V P FGG K SG+GR ++E+T K ++ +
Sbjct: 420 KGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGRFGNPWVVEEFTVTKWISIQKQ 479
Query: 601 LRSY 604
R Y
Sbjct: 480 YRKY 483
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R V +D+YD F GD D GP ++ K L I+ G
Sbjct: 291 NRIIVHQDVYDEFVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGI 350
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
+L GKR G+ + P VF ++ KIA+ E+F P+ TIIK + E I+ ANDT+Y
Sbjct: 351 ELAVEGKRVGN---VLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEY 407
Query: 191 GLASGIVTTNIDTANTFAHAINAG 214
GL+S + T++++ FA I++G
Sbjct: 408 GLSSAVFTSDLEKGEKFALQIDSG 431
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
++ K L I+ G +L GKR G+ + P VF ++ KIA+ E+F P+
Sbjct: 330 INERQIEKALEIIEQAKTDGIELAVEGKRVGN---VLTPYVFVGADNNSKIAQTELFAPI 386
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV--VPQ 333
TIIK + E I+ ANDT+YGL+S + T++++ FA I++G +N Q+V P
Sbjct: 387 ATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVND-QSVNDSPN 445
Query: 334 APFGGFKESGIGRELGKAALDEYTELKTVT-ESPLRSY 370
FGG K SG+GR ++E+T K ++ + R Y
Sbjct: 446 IAFGGNKASGVGRFGNPWVVEEFTVTKWISIQKQYRKY 483
>pdb|1WNB|A Chain A, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|B Chain B, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|C Chain C, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|D Chain D, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WND|A Chain A, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|B Chain B, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|C Chain C, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|D Chain D, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
Length = 495
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 165/378 (43%), Gaps = 77/378 (20%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M AWK PALAAG V+LKP+E TPLTAL +A L + FP GV+++L G G
Sbjct: 175 MAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVVNILFGRG-------- 225
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFT---- 116
GDP P+V V T
Sbjct: 226 ---------------------------------KTVGDPLTGH----PKVRMVSLTGSIA 248
Query: 117 ---KVLNYIKSGVEQGGKLEAGGKR------KGDKGYFIEPTVFSNVTDDFKIAREEIFG 167
++++ S +++ +E GGK D IE V T + A ++
Sbjct: 249 TGEHIISHTASSIKRT-HMELGGKAPVIVFDDAD----IEAVVEGVRTFGYYNAGQDCTA 303
Query: 168 PVQTIIKFKTLDEVIERANDTKYGLASGIV---TTNIDTANTFAHAINAGSVDAEMFTKV 224
+ + D ++E+ L SG +T + ++ AH G E K
Sbjct: 304 ACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEE--AKA 361
Query: 225 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL 284
+IK + G KRKG+ GY+ PT+ + D I ++E+FGPV ++ F
Sbjct: 362 TGHIKV-------ITGGEKRKGN-GYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNE 413
Query: 285 DEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGI 344
++V+ AND++YGLAS + T ++ A+ + + G W+N + +V + P GG K SG
Sbjct: 414 EQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGY 473
Query: 345 GRELGKAALDEYTELKTV 362
G+++ L++YT ++ V
Sbjct: 474 GKDMSLYGLEDYTVVRHV 491
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 18/234 (7%)
Query: 381 ASNLKRVSLELGGKSPLVICADADVD--------MAYYYCF--VCAGSRTYVQEDIYDTF 430
AS++KR +ELGGK+P+++ DAD++ YY A R Y Q+ IYDT
Sbjct: 258 ASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTL 317
Query: 431 XXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDK 489
G P D+S + GP +V ++ G K+ GG+++
Sbjct: 318 VEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGN 377
Query: 490 GYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNID 549
GY+ PT+ + D I ++E+FGPV ++ F ++V+ AND++YGLAS + T ++
Sbjct: 378 GYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVG 437
Query: 550 TANTFAHAINAGSA-------VVPQAPFGGFKESGIGRELGKAALDEYTELKTV 596
A+ + + G +V + P GG K SG G+++ L++YT ++ V
Sbjct: 438 RAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHV 491
>pdb|4DAL|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4DAL|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4DAL|C Chain C, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4DAL|D Chain D, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4DAL|E Chain E, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4DAL|F Chain F, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4DAL|G Chain G, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4DAL|H Chain H, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|4F3X|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021 Complexed With Nad
pdb|4F3X|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021 Complexed With Nad
pdb|4F3X|C Chain C, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021 Complexed With Nad
pdb|4F3X|D Chain D, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Sinorhizobium Meliloti 1021 Complexed With Nad
Length = 498
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 18/237 (7%)
Query: 378 AAAASNLKRVSLELGGKSPLVICADADVD--------MAYYYCF--VCAGSRTYVQEDIY 427
AAAA +KR LELGGK+P+++ DAD++ YY A R Y + IY
Sbjct: 257 AAAAKTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIY 316
Query: 428 DTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGG-KLEAGGKRK 486
+ D + GP + +V ++++ +Q ++ GG+
Sbjct: 317 EKLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTG 376
Query: 487 GDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTT 546
D+G+F +PTV + T + +I R E+FGPV ++ +F D+ + AND+ YGLAS + T
Sbjct: 377 SDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVAWANDSDYGLASSVWTK 436
Query: 547 NIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKTV 596
+I A A IN + + P GG K+SG G++ AL++YT ++ +
Sbjct: 437 DISKAXRAASRLQYGCTWINTHFXLTNEXPHGGIKQSGYGKDXSVYALEDYTAVRHI 493
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 223 KVLNYIKSGVEQGG-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKF 281
+V ++++ +Q ++ GG+ D+G+F +PTV + T + +I R E+FGPV ++ +F
Sbjct: 353 RVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRF 412
Query: 282 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKE 341
D+ + AND+ YGLAS + T +I A A + G WIN + + + P GG K+
Sbjct: 413 TGKDDAVAWANDSDYGLASSVWTKDISKAXRAASRLQYGCTWINTHFXLTNEXPHGGIKQ 472
Query: 342 SGIGRELGKAALDEYTELKTV 362
SG G++ AL++YT ++ +
Sbjct: 473 SGYGKDXSVYALEDYTAVRHI 493
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 72 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG- 130
R Y + IY+ D + GP + +V ++++ +Q
Sbjct: 308 RIYAEAGIYEKLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVERAADQKHI 367
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
++ GG+ D+G+F +PTV + T + +I R E+FGPV ++ +F D+ + AND+ Y
Sbjct: 368 EITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVAWANDSDY 427
Query: 191 GLASGIVTTNIDTANTFAHAINAG 214
GLAS + T +I A A + G
Sbjct: 428 GLASSVWTKDISKAXRAASRLQYG 451
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
AWK PA+ G V+ KP+EQTPLTAL +A L P+GV++V+ G G
Sbjct: 179 AWKLAPAIGGGNTVVFKPSEQTPLTALKLARLIADI-LPEGVVNVITGRG 227
>pdb|1UZB|A Chain A, 1-pyrroline-5-carboxylate Dehydrogenase
pdb|1UZB|B Chain B, 1-pyrroline-5-carboxylate Dehydrogenase
pdb|2EIW|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Proline
pdb|2EIW|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Proline
Length = 516
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 138/283 (48%), Gaps = 33/283 (11%)
Query: 343 GIGRELGKAALDEYTELKTVT-----ESPLRSYTSHSIMAAAAASNLKRVSLELGGKSPL 397
G+G E+G A L E+ ++ + E L+ Y + +A + KR +E GGK+ +
Sbjct: 238 GVGEEVG-AYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQ-TWFKRAYVETGGKNAI 295
Query: 398 VICADADVDMA------YYYCF----VCAGSRTYVQEDIYDTFXXXXXXXXXXXXXGDPF 447
++ AD D+A Y F A SR + + Y+ G P
Sbjct: 296 IVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVG-PA 354
Query: 448 DKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKI 507
+++ GP V AE KVL+YI+ G +G +L GGKR +GYFI PTVF+ V +I
Sbjct: 355 EENPDLGPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARI 413
Query: 508 AREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS----- 562
A+EEIFGPV ++I+ K E +E ANDT YGL G+ + + + G+
Sbjct: 414 AQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNR 473
Query: 563 ----AVVPQAPFGGFKESGIGRELGKAALDE---YTELKTVTE 598
A+V PFGGFK SG + G ALD + E+K V E
Sbjct: 474 KITGALVGVQPFGGFKLSGTNAKTG--ALDYLRLFLEMKAVAE 514
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 157/379 (41%), Gaps = 81/379 (21%)
Query: 7 GPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSP 66
GP +A G V+ KPAE + V + +AGFP GV++ LPG G Y
Sbjct: 196 GP-VAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAY-------- 246
Query: 67 LAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGV 126
+ + P++ + FT L
Sbjct: 247 -------------------------------------LVEHPRIRFINFTGSLEVGLKIY 269
Query: 127 EQGGKLEAGGKRKGDKGYFIEP----TVFSNVTDDFKIAREEIF------------GPVQ 170
E G+L G + K ++E + + T DF +A E + +
Sbjct: 270 EAAGRLAPG--QTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASR 327
Query: 171 TIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKS 230
I+ + V+ER L+ G N D V AE KVL+YI+
Sbjct: 328 LILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPV---------VSAEQERKVLSYIEI 378
Query: 231 GVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIER 290
G +G +L GGKR +GYFI PTVF+ V +IA+EEIFGPV ++I+ K E +E
Sbjct: 379 GKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEV 437
Query: 291 ANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVPQAPFGGFKESGIGREL 348
ANDT YGL G+ + + + G+++ N A+V PFGGFK SG +
Sbjct: 438 ANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKT 497
Query: 349 GKAALDE---YTELKTVTE 364
G ALD + E+K V E
Sbjct: 498 G--ALDYLRLFLEMKAVAE 514
>pdb|2BHP|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad.
pdb|2BHP|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad.
pdb|2BJK|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Citrate.
pdb|2BJK|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Citrate.
pdb|2IY6|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With
Bound Citrate
pdb|2IY6|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With
Bound Citrate
pdb|2EHQ|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadp
pdb|2EHQ|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadp
pdb|2EJ6|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
D-Proline
pdb|2EJ6|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
D-Proline
pdb|2BHQ|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Product Glutamate.
pdb|2BHQ|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Product Glutamate.
pdb|2J5N|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophirus With Bound Inhibitor Glycine And Nad.
pdb|2J5N|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophirus With Bound Inhibitor Glycine And Nad.
pdb|2EIT|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine And Nad
pdb|2EIT|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine And Nad
pdb|2EHU|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Inhibitor
L-Serine
pdb|2EHU|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Inhibitor
L-Serine
pdb|2EII|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Valine And Nad.
pdb|2EII|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Valine And Nad
Length = 516
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 137/283 (48%), Gaps = 33/283 (11%)
Query: 343 GIGRELGKAALDEYTELKTVT-----ESPLRSYTSHSIMAAAAASNLKRVSLELGGKSPL 397
G+G E+G A L E+ ++ + E L+ Y + +A + KR +E GGK +
Sbjct: 238 GVGEEVG-AYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQ-TWFKRAYVETGGKDAI 295
Query: 398 VICADADVDMA------YYYCF----VCAGSRTYVQEDIYDTFXXXXXXXXXXXXXGDPF 447
++ AD D+A Y F A SR + + Y+ G P
Sbjct: 296 IVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVG-PA 354
Query: 448 DKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKI 507
+++ GP V AE KVL+YI+ G +G +L GGKR +GYFI PTVF+ V +I
Sbjct: 355 EENPDLGPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARI 413
Query: 508 AREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS----- 562
A+EEIFGPV ++I+ K E +E ANDT YGL G+ + + + G+
Sbjct: 414 AQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNR 473
Query: 563 ----AVVPQAPFGGFKESGIGRELGKAALDE---YTELKTVTE 598
A+V PFGGFK SG + G ALD + E+K V E
Sbjct: 474 KITGALVGVQPFGGFKLSGTNAKTG--ALDYLRLFLEMKAVAE 514
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 157/379 (41%), Gaps = 81/379 (21%)
Query: 7 GPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSP 66
GP +A G V+ KPAE + V + +AGFP GV++ LPG G Y
Sbjct: 196 GP-VAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAY-------- 246
Query: 67 LAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGV 126
+ + P++ + FT L
Sbjct: 247 -------------------------------------LVEHPRIRFINFTGSLEVGLKIY 269
Query: 127 EQGGKLEAGGKRKGDKGYFIEP----TVFSNVTDDFKIAREEIF------------GPVQ 170
E G+L G + K ++E + + T DF +A E + +
Sbjct: 270 EAAGRLAPG--QTWFKRAYVETGGKDAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASR 327
Query: 171 TIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKS 230
I+ + V+ER L+ G N D V AE KVL+YI+
Sbjct: 328 LILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPV---------VSAEQERKVLSYIEI 378
Query: 231 GVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIER 290
G +G +L GGKR +GYFI PTVF+ V +IA+EEIFGPV ++I+ K E +E
Sbjct: 379 GKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEV 437
Query: 291 ANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVPQAPFGGFKESGIGREL 348
ANDT YGL G+ + + + G+++ N A+V PFGGFK SG +
Sbjct: 438 ANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKT 497
Query: 349 GKAALDE---YTELKTVTE 364
G ALD + E+K V E
Sbjct: 498 G--ALDYLRLFLEMKAVAE 514
>pdb|2W8N|A Chain A, The Crytal Structure Of The Oxidized Form Of Human Ssadh
pdb|2W8O|A Chain A, The Crystal Structure Of The Reduced Form Of Human Ssadh
Length = 487
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 117/249 (46%), Gaps = 22/249 (8%)
Query: 369 SYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV---------CAGSR 419
S T+ I+ AA+++KRVS+ELGG +P ++ A+VD A C S
Sbjct: 237 STTTGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSN 296
Query: 420 TY-VQEDIYDTFXXX-XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGG 477
+ VQ I+D F G+ F++ QGP ++ + KV + V +G
Sbjct: 297 QFLVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGA 356
Query: 478 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 537
+ GGKR F EPT+ NVT D EE FGP+ +IKF T +E I AN
Sbjct: 357 TVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADV 416
Query: 538 GLASGIVTTNIDTANTFAHA---------INAGSAVVPQAPFGGFKESGIGRELGKAALD 588
GLA + D A + A +N G + PFGG K+SG+GRE K +D
Sbjct: 417 GLAGYFYSQ--DPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGID 474
Query: 589 EYTELKTVT 597
EY ELK V
Sbjct: 475 EYLELKYVC 483
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 200 NIDTANTFAHAINAGS-VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFS 258
N+ N F G ++ + KV + V +G + GGKR F EPT+
Sbjct: 319 NLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLC 378
Query: 259 NVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAIN 318
NVT D EE FGP+ +IKF T +E I AN GLA + + A +
Sbjct: 379 NVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLE 438
Query: 319 AGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
G V +N + PFGG K+SG+GRE K +DEY ELK V
Sbjct: 439 VGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVC 483
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 75 VQEDIYDTFXXX-XXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLE 133
VQ I+D F G+ F++ QGP ++ KV + V +G +
Sbjct: 300 VQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVV 359
Query: 134 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 193
GGKR F EPT+ NVT D EE FGP+ +IKF T +E I AN GLA
Sbjct: 360 TGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLA 419
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M+ K G ALAAGC V++KPAE TP +AL +A L QAG P GV +V+P +
Sbjct: 162 MITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGE 221
Query: 61 KSCLSPLAYR 70
C PL +
Sbjct: 222 AICTDPLVSK 231
>pdb|2BJA|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2BJA|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2J40|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2J40|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2EJD|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJD|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJL|A Chain A, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
pdb|2EJL|B Chain B, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
Length = 516
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 136/283 (48%), Gaps = 33/283 (11%)
Query: 343 GIGRELGKAALDEYTELKTVT-----ESPLRSYTSHSIMAAAAASNLKRVSLELGGKSPL 397
G+G E+G A L E+ ++ + E L+ Y + +A + KR +E GGK +
Sbjct: 238 GVGEEVG-AYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQ-TWFKRAYVETGGKDAI 295
Query: 398 VICADADVDMAYYYCFVCA----------GSRTYVQEDIYDTFXXXXXXXXXXXXXGDPF 447
++ AD D+A V A SR + + Y+ G P
Sbjct: 296 IVDETADFDLAAEGVVVSAYGFQGQKXSAASRLILTQGAYEPVLERVLKRAERLSVG-PA 354
Query: 448 DKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKI 507
+++ GP V AE KVL+YI+ G +G +L GGKR +GYFI PTVF+ V +I
Sbjct: 355 EENPDLGPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARI 413
Query: 508 AREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS----- 562
A+EEIFGPV ++I+ K E +E ANDT YGL G+ + + + G+
Sbjct: 414 AQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNR 473
Query: 563 ----AVVPQAPFGGFKESGIGRELGKAALDE---YTELKTVTE 598
A+V PFGGFK SG + G ALD + E+K V E
Sbjct: 474 KITGALVGVQPFGGFKLSGTNAKTG--ALDYLRLFLEMKAVAE 514
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 157/379 (41%), Gaps = 81/379 (21%)
Query: 7 GPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSP 66
GP +A G V+ KPAE + V + +AGFP GV++ LPG G Y
Sbjct: 196 GP-VAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAY-------- 246
Query: 67 LAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGV 126
+ + P++ + FT L
Sbjct: 247 -------------------------------------LVEHPRIRFINFTGSLEVGLKIY 269
Query: 127 EQGGKLEAGGKRKGDKGYFIEP----TVFSNVTDDFKIAREEIF------------GPVQ 170
E G+L G + K ++E + + T DF +A E + +
Sbjct: 270 EAAGRLAPG--QTWFKRAYVETGGKDAIIVDETADFDLAAEGVVVSAYGFQGQKXSAASR 327
Query: 171 TIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKS 230
I+ + V+ER L+ G N D V AE KVL+YI+
Sbjct: 328 LILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPV---------VSAEQERKVLSYIEI 378
Query: 231 GVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIER 290
G +G +L GGKR +GYFI PTVF+ V +IA+EEIFGPV ++I+ K E +E
Sbjct: 379 GKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEV 437
Query: 291 ANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVPQAPFGGFKESGIGREL 348
ANDT YGL G+ + + + G+++ N A+V PFGGFK SG +
Sbjct: 438 ANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKT 497
Query: 349 GKAALDE---YTELKTVTE 364
G ALD + E+K V E
Sbjct: 498 G--ALDYLRLFLEMKAVAE 514
>pdb|2W8P|A Chain A, The Crystal Structure Of Human C340a Ssadh
pdb|2W8Q|A Chain A, The Crystal Structure Of Human Ssadh In Complex With Ssa.
pdb|2W8R|A Chain A, The Crystal Structure Of Human Ssadh In Complex With Nad+
Length = 487
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 369 SYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF-----------VCAG 417
S T+ I+ AA+++KRVS+ELGG +P ++ A+VD A VC+
Sbjct: 237 STTTGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTAVCS- 295
Query: 418 SRTYVQEDIYDTFXXX-XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQG 476
++ VQ I+D F G+ F++ QGP ++ + KV + V +G
Sbjct: 296 NQFLVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKG 355
Query: 477 GKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 536
+ GGKR F EPT+ NVT D EE FGP+ +IKF T +E I AN
Sbjct: 356 ATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAAD 415
Query: 537 YGLASGIVTTNIDTANTFAHA---------INAGSAVVPQAPFGGFKESGIGRELGKAAL 587
GLA + D A + A +N G + PFGG K+SG+GRE K +
Sbjct: 416 VGLAGYFYSQ--DPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGI 473
Query: 588 DEYTELKTVT 597
DEY ELK V
Sbjct: 474 DEYLELKYVC 483
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 200 NIDTANTFAHAINAGS-VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFS 258
N+ N F G ++ + KV + V +G + GGKR F EPT+
Sbjct: 319 NLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLC 378
Query: 259 NVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAIN 318
NVT D EE FGP+ +IKF T +E I AN GLA + + A +
Sbjct: 379 NVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLE 438
Query: 319 AGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
G V +N + PFGG K+SG+GRE K +DEY ELK V
Sbjct: 439 VGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVC 483
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 75 VQEDIYDTFXXX-XXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLE 133
VQ I+D F G+ F++ QGP ++ KV + V +G +
Sbjct: 300 VQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVV 359
Query: 134 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 193
GGKR F EPT+ NVT D EE FGP+ +IKF T +E I AN GLA
Sbjct: 360 TGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLA 419
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M+ K G ALAAGC V++KPAE TP +AL +A L QAG P GV +V+P +
Sbjct: 162 MITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGE 221
Query: 61 KSCLSPLAYR 70
C PL +
Sbjct: 222 AICTDPLVSK 231
>pdb|3RH9|A Chain A, The Crystal Structure Of Oxidoreductase From Marinobacter
Aquaeolei
pdb|3RH9|B Chain B, The Crystal Structure Of Oxidoreductase From Marinobacter
Aquaeolei
Length = 506
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 121/236 (51%), Gaps = 22/236 (9%)
Query: 381 ASNLKRVSLELGGKSPLVICADADVDMAYYYCF-----------VCAGSRTYVQEDIYDT 429
A +K+++LELGG +P ++ DAD++ A VCA +R +V E + D
Sbjct: 247 AEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCA-NRIFVHEKVADA 305
Query: 430 FXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK--RKG 487
F GD + + GP ++ + F KV +++ +++G L AG + G
Sbjct: 306 FGQKLAERVNKXTVGDGXNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELG 365
Query: 488 DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTN 547
D G F PTV V + +EE FGP+ F+T +EVI+ NDT++GLAS + T +
Sbjct: 366 D-GLFFPPTVVQGVDREXCCYQEETFGPLVPXALFRTEEEVIDAGNDTEFGLASYVFTAD 424
Query: 548 IDTANTFAHAI-------NAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKTV 596
+ A A + N G+ P+APFGG K SGIGRE G L E+ E +TV
Sbjct: 425 AERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGXKASGIGREGGLEGLFEFVEAQTV 480
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGK--RKGDKGYFIEPTVFSNVTDDFKIAREEIFG 273
++ + F KV +++ +++G L AG + GD G F PTV V + +EE FG
Sbjct: 333 INKQGFDKVKRHLQDALDKGASLVAGKQPAELGD-GLFFPPTVVQGVDREXCCYQEETFG 391
Query: 274 PVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQ 333
P+ F+T +EVI+ NDT++GLAS + T + + A A + G V N P+
Sbjct: 392 PLVPXALFRTEEEVIDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPE 451
Query: 334 APFGGFKESGIGRELGKAALDEYTELKTV 362
APFGG K SGIGRE G L E+ E +TV
Sbjct: 452 APFGGXKASGIGREGGLEGLFEFVEAQTV 480
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R +V E + D F GD + + GP ++ F KV +++ +++G
Sbjct: 294 NRIFVHEKVADAFGQKLAERVNKXTVGDGXNDGIDIGPLINKQGFDKVKRHLQDALDKGA 353
Query: 131 KLEAGGK--RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDT 188
L AG + GD G F PTV V + +EE FGP+ F+T +EVI+ NDT
Sbjct: 354 SLVAGKQPAELGD-GLFFPPTVVQGVDREXCCYQEETFGPLVPXALFRTEEEVIDAGNDT 412
Query: 189 KYGLASGIVTTNIDTANTFAHAINAGSV 216
++GLAS + T + + A A + G V
Sbjct: 413 EFGLASYVFTADAERAQRVAAGLRFGHV 440
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 13 GCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
GCP ++KPA +TPLT + ++ + PDG ++++ G
Sbjct: 175 GCPSVIKPASETPLTXIAFFSVXDKLDLPDGXVNLVXG 212
>pdb|3PQA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3RHD|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
Length = 486
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 23/234 (9%)
Query: 384 LKRVSLELGGKSPLVICADADVDMAYYYC----FVCAGS------RTYVQEDIYDTFXXX 433
K+++LELGG +P ++ DAD++ A F+ AG V E I D F
Sbjct: 235 FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEM 294
Query: 434 XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFI 493
G+P D+ GP + E V ++ +++GGKL GGKR DK F
Sbjct: 295 FVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKR--DKALFY 352
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
PT+ V D + + E F PV II+ +E+I+ AN T+YGL S I T +I+ +
Sbjct: 353 -PTILE-VDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLK 409
Query: 554 FAHAINAGSAVVPQA--------PFGGFKESGIGRELGKAALDEYTELKTVTES 599
FA + G V+ + PFGG K+SG+GRE K A++E + +KT+ S
Sbjct: 410 FAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIIIS 463
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 9/149 (6%)
Query: 218 AEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQT 277
AE KV ++ +++GGKL GGKR DK F PT+ V D + + E F PV
Sbjct: 323 AEWVEKV---VEKAIDEGGKLLLGGKR--DKALFY-PTILE-VDRDNILCKTETFAPVIP 375
Query: 278 IIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVP-QAPF 336
II+ +E+I+ AN T+YGL S I T +I+ + FA + G V IN PF
Sbjct: 376 IIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPF 434
Query: 337 GGFKESGIGRELGKAALDEYTELKTVTES 365
GG K+SG+GRE K A++E + +KT+ S
Sbjct: 435 GGVKKSGLGREGVKYAMEEMSNIKTIIIS 463
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 8/152 (5%)
Query: 75 VQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEA 134
V E I D F G+P D+ GP + V ++ +++GGKL
Sbjct: 283 VDESIADKFIEMFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLL 342
Query: 135 GGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLAS 194
GGKR DK F PT+ V D + + E F PV II+ +E+I+ AN T+YGL S
Sbjct: 343 GGKR--DKALFY-PTILE-VDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTEYGLHS 397
Query: 195 GIVTTNIDTANTFAHAINAGSV---DAEMFTK 223
I T +I+ + FA + G V D+ +F +
Sbjct: 398 AIFTNDINKSLKFAENLEFGGVVINDSSLFRQ 429
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQA----GFPDGVISVLPGYG 52
A K PA+A G ++ P+ + PL + +A + + A P GV ++L G G
Sbjct: 148 AHKIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAG 201
>pdb|1T90|A Chain A, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|B Chain B, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|C Chain C, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|D Chain D, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
Length = 486
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 125/269 (46%), Gaps = 33/269 (12%)
Query: 355 EYTELKTVT---ESPLRSYTSHSIMAAAAASNLKRVSLELGGKSPLVICADADVD----- 406
E+ E+K ++ P+ Y + NLKRV G K+ ++ DA+++
Sbjct: 216 EHPEIKAISFVGSKPVGEYVYKK-----GSENLKRVQSLTGAKNHTIVLNDANLEDTVTN 270
Query: 407 -------MAYYYCFVCAGSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDA 459
A C CA V+E I D F G+ D V GP +
Sbjct: 271 IVGAAFGSAGERCMACA--VVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIRE 328
Query: 460 EMFTKVLNYIKSGVEQGGKLEAGGKRK-GDKGYFIEPTVFSNVTDDFKIAREEIFGPVQT 518
+ + L+YI+ G+E+G +L G+ D GYF+ PT+F NVT + I ++EIF PV +
Sbjct: 329 DNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLS 388
Query: 519 IIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSAVV------PQA--PF 570
+I+ K L E IE AN +++ + + T+N + F I+AG + P A PF
Sbjct: 389 VIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPF 448
Query: 571 GGFKESGIG--RELGKAALDEYTELKTVT 597
G+K S G GK ++D YT K VT
Sbjct: 449 SGWKSSFFGTLHANGKDSVDFYTRKKVVT 477
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 223 KVLNYIKSGVEQGGKLEAGGKRK-GDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKF 281
+ L+YI+ G+E+G +L G+ D GYF+ PT+F NVT + I ++EIF PV ++I+
Sbjct: 333 RTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRV 392
Query: 282 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQA--PFGGF 339
K L E IE AN +++ + + T+N + F I+AG + IN P A PF G+
Sbjct: 393 KNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINL-GVPAPMAFFPFSGW 451
Query: 340 KESGIG--RELGKAALDEYTELKTVT 363
K S G GK ++D YT K VT
Sbjct: 452 KSSFFGTLHANGKDSVDFYTRKKVVT 477
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 75 VQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEA 134
V+E I D F G+ D V GP + + L+YI+ G+E+G +L
Sbjct: 291 VEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVC 350
Query: 135 GGKRK-GDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 193
G+ D GYF+ PT+F NVT + I ++EIF PV ++I+ K L E IE AN +++
Sbjct: 351 DGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANG 410
Query: 194 SGIVTTNIDTANTFAHAINAGSV 216
+ + T+N + F I+AG +
Sbjct: 411 ACLFTSNSNAIRYFRENIDAGML 433
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
W + A+A G +LKP+E+TPL + L ++AG P GV +V+ G
Sbjct: 159 CWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYG 206
>pdb|3EFV|A Chain A, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3EFV|B Chain B, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3EFV|C Chain C, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3EFV|D Chain D, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3ETF|A Chain A, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
pdb|3ETF|B Chain B, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
pdb|3ETF|C Chain C, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
pdb|3ETF|D Chain D, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
Length = 462
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 17/230 (7%)
Query: 384 LKRVSLELGGKSPLVICADADVDMAYYYCF---------VCAGSRTY-VQEDIYDTFXXX 433
LK+ LELGG P ++ DAD+++A VCA ++ + V+E I F
Sbjct: 228 LKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIAQAFTDR 287
Query: 434 XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFI 493
GDP + GP ++ ++ +++ V +G +L GG++ +G +
Sbjct: 288 FVAAAAALKXGDPLVEENDLGPXARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYY 347
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
TV ++VT D R+E+FGPV I K + AND+++GL++ I T + A
Sbjct: 348 AATVLADVTPDXTAFRQELFGPVAAITVAKDAAHALALANDSEFGLSATIFTADDTLAAE 407
Query: 554 FAHAINAG-------SAVVPQAPFGGFKESGIGRELGKAALDEYTELKTV 596
A + G SA + FGG K+SG GREL L E+ ++TV
Sbjct: 408 XAARLECGGVFINGYSASDARVAFGGVKKSGFGRELSHFGLHEFCNVQTV 457
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 75/135 (55%)
Query: 228 IKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEV 287
+++ V +G +L GG++ +G + TV ++VT D R+E+FGPV I K
Sbjct: 323 VQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDXTAFRQELFGPVAAITVAKDAAHA 382
Query: 288 IERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRE 347
+ AND+++GL++ I T + A A + G V+IN Y A + FGG K+SG GRE
Sbjct: 383 LALANDSEFGLSATIFTADDTLAAEXAARLECGGVFINGYSASDARVAFGGVKKSGFGRE 442
Query: 348 LGKAALDEYTELKTV 362
L L E+ ++TV
Sbjct: 443 LSHFGLHEFCNVQTV 457
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%)
Query: 68 AYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVE 127
A R V+E I F GDP + GP + ++ +++ V
Sbjct: 269 AAAKRFIVEEGIAQAFTDRFVAAAAALKXGDPLVEENDLGPXARFDLRDELHQQVQASVA 328
Query: 128 QGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 187
+G +L GG++ +G + TV ++VT D R+E+FGPV I K + AND
Sbjct: 329 EGARLLLGGEKIAGEGNYYAATVLADVTPDXTAFRQELFGPVAAITVAKDAAHALALAND 388
Query: 188 TKYGLASGIVTTNIDTANTFAHAINAGSV 216
+++GL++ I T + A A + G V
Sbjct: 389 SEFGLSATIFTADDTLAAEXAARLECGGV 417
>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|B Chain B, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|C Chain C, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|D Chain D, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
Length = 508
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 21/226 (9%)
Query: 384 LKRVSLELGGKSPLVICADADVDMA---------YYYCFVCAG-SRTYVQEDIYDTFXXX 433
+K V+LELGG +P V+ ADAD+D A + +C +R V ++D F
Sbjct: 254 MKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHDEFLEK 313
Query: 434 XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFI 493
GDP + GP ++ + + I+ ++G ++ G +G +
Sbjct: 314 FVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPIEG---RLV 370
Query: 494 EPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANT 553
P VFS+VT D +IAREEIFGP+ +++K E AN + +GL++ + + +ID A
Sbjct: 371 HPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAELANASDFGLSAAVWSKDIDRAAQ 430
Query: 554 FAHAINAGSAVV--------PQAPFGGFKESGIGRELGKAALDEYT 591
FA I++G + P FGG K SG+GR G A++E+T
Sbjct: 431 FALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGRFNGDWAIEEFT 476
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 248 KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNI 307
+G + P VFS+VT D +IAREEIFGP+ +++K E AN + +GL++ + + +I
Sbjct: 366 EGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAELANASDFGLSAAVWSKDI 425
Query: 308 DTANTFAHAINAGSVWINCYQAV-VPQAPFGGFKESGIGRELGKAALDEYT 357
D A FA I++G V IN P FGG K SG+GR G A++E+T
Sbjct: 426 DRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGRFNGDWAIEEFT 476
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 63 CLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYI 122
C+S +R V ++D F GDP + GP ++ + + I
Sbjct: 294 CMS----INRVIVDAAVHDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKI 349
Query: 123 KSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVI 182
+ ++G ++ G +G + P VFS+VT D +IAREEIFGP+ +++K
Sbjct: 350 ELAKKEGATVQVEGPIEG---RLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAA 406
Query: 183 ERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFT 222
E AN + +GL++ + + +ID A FA I++G V T
Sbjct: 407 ELANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLT 446
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 8 PALAAGCPVLLKPAEQTPLTALYVAA-LTQQAGFPDGVISVLPGYG 52
PALA G V++KPA TP+T + A + ++AG P GVIS + G G
Sbjct: 171 PALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVAGAG 216
>pdb|3ROS|A Chain A, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Lactobacillus Acidophilus
Length = 484
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 17/242 (7%)
Query: 374 SIMAAAAASNLKRVSLELGGKSPLVICADADVDM---------AYYYCFVCAGS-RTYVQ 423
S +A AA NLK+ + ELGG ++ DAD + Y VC S R V+
Sbjct: 215 SAVAEAAGKNLKKSTXELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVE 274
Query: 424 EDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG 483
+ YD GDP + P + K+ +K ++ G K+
Sbjct: 275 KSRYDEVLHELKNVFSNLKAGDPLEADTTLPPXNSEKAKEKLEAQVKEAIDAGAKVFYQY 334
Query: 484 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
KG F PT+ +++ D + +E+FGP+ + + + I+ AND+ YGL S +
Sbjct: 335 PEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSV 394
Query: 544 VTTNIDTANTFAHAINAGSAVVP-------QAPFGGFKESGIGRELGKAALDEYTELKTV 596
+ ++ID A + I G V+ + PFGG K+SG GREL L + V
Sbjct: 395 IGSDIDRAKKVSAQIETGXTVINGRWITSGELPFGGIKKSGYGRELSGLGLXAFVNEHLV 454
Query: 597 TE 598
+
Sbjct: 455 ID 456
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 147/379 (38%), Gaps = 86/379 (22%)
Query: 6 WGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDG-VISVLPGYGPMSAPYWRKSCL 64
+ P G P+LLK A P +A A + ++AG P+G +I++ P Y ++
Sbjct: 144 FAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGSLINLYPSYDQLA--------- 194
Query: 65 SPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKS 124
+ P++ V T
Sbjct: 195 --------------------------------------DIIADPRIQGVALT-------- 208
Query: 125 GVEQGGKL--EAGGKR--------KGDKGYFI----EPTVFSNVTDDFKIAREEIFGPVQ 170
G E+GG EA GK G+ + + +P V NV +D AR G V
Sbjct: 209 GSERGGSAVAEAAGKNLKKSTXELGGNDAFIVLDDADPQVLRNVLND---ARTYNDGQVC 265
Query: 171 T-----IIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVL 225
T I++ DEV+ + L +G + A+T N+ ++ +V
Sbjct: 266 TSSKRIIVEKSRYDEVLHELKNVFSNLKAG----DPLEADTTLPPXNSEKAKEKLEAQV- 320
Query: 226 NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 285
K ++ G K+ KG F PT+ +++ D + +E+FGP+ + + +
Sbjct: 321 ---KEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDN 377
Query: 286 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIG 345
I+ AND+ YGL S ++ ++ID A + I G IN + PFGG K+SG G
Sbjct: 378 AAIQLANDSSYGLGSSVIGSDIDRAKKVSAQIETGXTVINGRWITSGELPFGGIKKSGYG 437
Query: 346 RELGKAALDEYTELKTVTE 364
REL L + V +
Sbjct: 438 RELSGLGLXAFVNEHLVID 456
>pdb|2JG7|A Chain A, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
pdb|2JG7|B Chain B, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
pdb|2JG7|C Chain C, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
pdb|2JG7|D Chain D, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
pdb|2JG7|E Chain E, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
pdb|2JG7|F Chain F, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
pdb|2JG7|G Chain G, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
pdb|2JG7|H Chain H, Crystal Structure Of Seabream Antiquitin And Elucidation
Of Its Substrate Specificity
Length = 510
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 29/276 (10%)
Query: 345 GRELGKA-ALDEYTELKTVTESPLRSYTSH--SIMAAAAASNLKRVSLELGGKSPLVICA 401
G ++G A A DE +L + T S +H ++A R LELGG + +++
Sbjct: 225 GADIGTAMAKDERVDLLSFTGS------THVGKMVAMMVQERFGRKLLELGGNNAIIVFE 278
Query: 402 DADVDM----AYYYCFVCAGSRT------YVQEDIYDTFXXXXXXXXXXXXXGDPFDKSV 451
DAD+++ A + AG R + E ++D GDP+D S
Sbjct: 279 DADLNLVVPSAVFASVGTAGQRCTTTRRLMLHESVHDAVVERIAKAYKQVRIGDPWDPST 338
Query: 452 QQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 511
GP + + L I+ +QGG L GGK G ++EPT+ + + D I E
Sbjct: 339 LYGPLHTKQAVDQYLAAIEQAKQQGGTLVCGGKVMDRPGNYVEPTIITGLAHDAPIVHTE 398
Query: 512 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSAVV----PQ 567
F P+ ++KFKT +E N+ + GL+S I T ++ + + +V P
Sbjct: 399 TFVPILYVLKFKTEEEAFAWNNEVQQGLSSSIFTKDLGRVFRWLGPKGSDCGIVNVNIPT 458
Query: 568 A------PFGGFKESGIGRELGKAALDEYTELKTVT 597
+ FGG K +G GRE G + +Y T T
Sbjct: 459 SGAEIGGAFGGEKHTGGGRESGSDSWKQYMRRSTCT 494
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 85/205 (41%), Gaps = 13/205 (6%)
Query: 72 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R + E ++D GDP+D S GP + L I+ +QGG
Sbjct: 306 RLMLHESVHDAVVERIAKAYKQVRIGDPWDPSTLYGPLHTKQAVDQYLAAIEQAKQQGGT 365
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
L GGK G ++EPT+ + + D I E F P+ ++KFKT +E N+ + G
Sbjct: 366 LVCGGKVMDRPGNYVEPTIITGLAHDAPIVHTETFVPILYVLKFKTEEEAFAWNNEVQQG 425
Query: 192 LASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGG-----KLEAGGKRKG 246
L+S I T D F GS D + +N SG E GG K GG+ G
Sbjct: 426 LSSSIFTK--DLGRVFRWLGPKGS-DCGIVN--VNIPTSGAEIGGAFGGEKHTGGGRESG 480
Query: 247 D---KGYFIEPTVFSNVTDDFKIAR 268
K Y T N + D +A+
Sbjct: 481 SDSWKQYMRRSTCTINYSKDLPLAQ 505
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 225 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL 284
L I+ +QGG L GGK G ++EPT+ + + D I E F P+ ++KFKT
Sbjct: 353 LAAIEQAKQQGGTLVCGGKVMDRPGNYVEPTIITGLAHDAPIVHTETFVPILYVLKFKTE 412
Query: 285 DEVIERANDTKYGLASGIVTTNIDTANTF--AHAINAGSVWINCYQAVVPQA------PF 336
+E N+ + GL+S I T ++ + + G V +N +P + F
Sbjct: 413 EEAFAWNNEVQQGLSSSIFTKDLGRVFRWLGPKGSDCGIVNVN-----IPTSGAEIGGAF 467
Query: 337 GGFKESGIGRELGKAALDEYTELKTVT 363
GG K +G GRE G + +Y T T
Sbjct: 468 GGEKHTGGGRESGSDSWKQYMRRSTCT 494
>pdb|1KY8|A Chain A, Crystal Structure Of The Non-Phosphorylating
Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 501
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 23/235 (9%)
Query: 384 LKRVSLELGGKSPLVICADADVDMAY----YYCFVCAGSR------TYVQEDIYDTFXXX 433
+K+ +ELGG P ++ DAD+D+A + AG R + +Y
Sbjct: 257 VKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEE 316
Query: 434 XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFI 493
GDP D +V GP + +++ I+ VE+GG++ AGG+R G ++
Sbjct: 317 VAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPT--YV 374
Query: 494 EPTVFSNVTD---DFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDT 550
+PT+ D D + + E+F PV + ++ K LD+ IE AN YGL + + ++
Sbjct: 375 QPTLVEAPADRVKDMVLYKREVFAPVASAVEVKDLDQAIELANGRPYGLDAAVFGRDVVK 434
Query: 551 ANTFAHAINAGSAVV---PQA-----PFGGFKESGIGRELGKAALDEYTELKTVT 597
+ G+ + P+ PFGG K+SG+ RE A++ T KT+
Sbjct: 435 IRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVEAVTAYKTIV 489
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 6/145 (4%)
Query: 223 KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTD---DFKIAREEIFGPVQTII 279
+++ I+ VE+GG++ AGG+R G +++PT+ D D + + E+F PV + +
Sbjct: 347 EMMAAIEDAVEKGGRVLAGGRRLGPT--YVQPTLVEAPADRVKDMVLYKREVFAPVASAV 404
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN-CYQAVVPQAPFGG 338
+ K LD+ IE AN YGL + + ++ + G+++IN + + PFGG
Sbjct: 405 EVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGG 464
Query: 339 FKESGIGRELGKAALDEYTELKTVT 363
K+SG+ RE A++ T KT+
Sbjct: 465 RKKSGVFREGIGYAVEAVTAYKTIV 489
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 97 GDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTD 156
GDP D +V GP + +++ I+ VE+GG++ AGG+R G +++PT+ D
Sbjct: 327 GDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPT--YVQPTLVEAPAD 384
Query: 157 ---DFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINA 213
D + + E+F PV + ++ K LD+ IE AN YGL + + ++ +
Sbjct: 385 RVKDMVLYKREVFAPVASAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEV 444
Query: 214 GSV 216
G++
Sbjct: 445 GAI 447
>pdb|1UXV|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
Length = 501
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 23/235 (9%)
Query: 384 LKRVSLELGGKSPLVICADADVDMAY----YYCFVCAGSR------TYVQEDIYDTFXXX 433
+K+ +ELGG P ++ DAD+D+A + AG R + +Y
Sbjct: 257 VKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEE 316
Query: 434 XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFI 493
GDP D +V GP + +++ I+ VE+GG++ AGG+R G ++
Sbjct: 317 VAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPT--YV 374
Query: 494 EPTVFSNVTD---DFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDT 550
+PT+ D D + + E+F PV ++ K LD+ IE AN YGL + + ++
Sbjct: 375 QPTLVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVK 434
Query: 551 ANTFAHAINAGSAVV---PQA-----PFGGFKESGIGRELGKAALDEYTELKTVT 597
+ G+ + P+ PFGG K+SG+ RE A++ T KT+
Sbjct: 435 IRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVEAVTAYKTIV 489
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 223 KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTD---DFKIAREEIFGPVQTII 279
+++ I+ VE+GG++ AGG+R G +++PT+ D D + + E+F PV +
Sbjct: 347 EMMAAIEDAVEKGGRVLAGGRRLGPT--YVQPTLVEAPADRVKDMVLYKREVFAPVALAV 404
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN-CYQAVVPQAPFGG 338
+ K LD+ IE AN YGL + + ++ + G+++IN + + PFGG
Sbjct: 405 EVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGG 464
Query: 339 FKESGIGRELGKAALDEYTELKTVT 363
K+SG+ RE A++ T KT+
Sbjct: 465 RKKSGVFREGIGYAVEAVTAYKTIV 489
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 97 GDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTD 156
GDP D +V GP + +++ I+ VE+GG++ AGG+R G +++PT+ D
Sbjct: 327 GDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPT--YVQPTLVEAPAD 384
Query: 157 ---DFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINA 213
D + + E+F PV ++ K LD+ IE AN YGL + + ++ +
Sbjct: 385 RVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEV 444
Query: 214 GSV 216
G++
Sbjct: 445 GAI 447
>pdb|1UXN|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXP|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXQ|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXR|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXT|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-phosphorylating
Glyceraldehyde-3-phosphate Dehydrogenase (gapn) From
Thermoproteus Tenax
pdb|1UXU|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
Length = 501
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 23/235 (9%)
Query: 384 LKRVSLELGGKSPLVICADADVDMAY----YYCFVCAGSR------TYVQEDIYDTFXXX 433
+K+ +ELGG P ++ DAD+D+A + AG R + +Y
Sbjct: 257 VKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEE 316
Query: 434 XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFI 493
GDP D +V GP + +++ I+ VE+GG++ AGG+R G ++
Sbjct: 317 VAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPT--YV 374
Query: 494 EPTVFSNVTD---DFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDT 550
+PT D D + + E+F PV ++ K LD+ IE AN YGL + + ++
Sbjct: 375 QPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVK 434
Query: 551 ANTFAHAINAGSAVV---PQA-----PFGGFKESGIGRELGKAALDEYTELKTVT 597
+ G+ + P+ PFGG K+SG+ RE A++ T KT+
Sbjct: 435 IRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVEAVTAYKTIV 489
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 223 KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTD---DFKIAREEIFGPVQTII 279
+++ I+ VE+GG++ AGG+R G +++PT D D + + E+F PV +
Sbjct: 347 EMMAAIEDAVEKGGRVLAGGRRLGPT--YVQPTFVEAPADRVKDMVLYKREVFAPVALAV 404
Query: 280 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN-CYQAVVPQAPFGG 338
+ K LD+ IE AN YGL + + ++ + G+++IN + + PFGG
Sbjct: 405 EVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGG 464
Query: 339 FKESGIGRELGKAALDEYTELKTVT 363
K+SG+ RE A++ T KT+
Sbjct: 465 RKKSGVFREGIGYAVEAVTAYKTIV 489
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 97 GDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTD 156
GDP D +V GP + +++ I+ VE+GG++ AGG+R G +++PT D
Sbjct: 327 GDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPT--YVQPTFVEAPAD 384
Query: 157 ---DFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINA 213
D + + E+F PV ++ K LD+ IE AN YGL + + ++ +
Sbjct: 385 RVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEV 444
Query: 214 GSV 216
G++
Sbjct: 445 GAI 447
>pdb|3PRL|A Chain A, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3PRL|B Chain B, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3PRL|C Chain C, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3PRL|D Chain D, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3RHH|A Chain A, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
pdb|3RHH|B Chain B, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
pdb|3RHH|C Chain C, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
pdb|3RHH|D Chain D, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
Length = 505
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 103/223 (46%), Gaps = 22/223 (9%)
Query: 387 VSLELGGKSPLVICADADVDM--------AYYYC--FVCAGSRTYVQEDIYDTFXXXXXX 436
V LELGGK P ++ DAD+ + A+ Y A R +VQ+ + D
Sbjct: 256 VVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVADQLVANIKE 315
Query: 437 XXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPT 496
G P D + P +D + + I +E G L +G KR+G+ + PT
Sbjct: 316 LVEQLTVGSPEDDA-DITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGN---LLSPT 371
Query: 497 VFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA-NTFA 555
+ +VT ++A EE FGPV II+ K +E I +N + YGL + I T + D A N
Sbjct: 372 LLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQSDYGLQASIFTKDTDRAINIGK 431
Query: 556 H------AINAGSAVVPQA-PFGGFKESGIGRELGKAALDEYT 591
H INA + P PF G K+SG+G + K +L T
Sbjct: 432 HLEVGTVHINAKTERGPDHFPFLGVKKSGLGVQGIKPSLLSMT 474
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 227 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 286
I +E G L +G KR+G+ + PT+ +VT ++A EE FGPV II+ K +E
Sbjct: 346 LIDDALENGATLLSGNKRQGN---LLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANE 402
Query: 287 VIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQA-PFGGFKESGIG 345
I +N + YGL + I T + D A + G+V IN P PF G K+SG+G
Sbjct: 403 AISLSNQSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLG 462
Query: 346 RELGKAALDEYT 357
+ K +L T
Sbjct: 463 VQGIKPSLLSMT 474
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 4/145 (2%)
Query: 72 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R +VQ+ + D G P D + P +D + I +E G
Sbjct: 298 RVFVQDSVADQLVANIKELVEQLTVGSPEDDA-DITPVIDEKSAAFIQGLIDDALENGAT 356
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
L +G KR+G+ + PT+ +VT ++A EE FGPV II+ K +E I +N + YG
Sbjct: 357 LLSGNKRQGN---LLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQSDYG 413
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
L + I T + D A + G+V
Sbjct: 414 LQASIFTKDTDRAINIGKHLEVGTV 438
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
+ A K PAL G V+ KPA Q L+ + + AG P+G+I V+ G G
Sbjct: 168 LAAAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPEGIIQVVTGRG 219
>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|C Chain C, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|D Chain D, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|E Chain E, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|F Chain F, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|G Chain G, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|H Chain H, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
Length = 500
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 20/232 (8%)
Query: 386 RVSLELGGKSPLVICADADVDM----AYYYCFVCAGSRT------YVQEDIYDTFXXXXX 435
R LELGG + ++ DAD+ + A + AG R ++ E I+D
Sbjct: 265 RSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLK 324
Query: 436 XXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEP 495
G+P+D +V GP + + L ++ ++GG + GGK G ++EP
Sbjct: 325 KAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEP 384
Query: 496 TVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFA 555
T+ + + D IA E F P+ + KF+ +EV N+ K GL+S I T ++ +
Sbjct: 385 TIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWL 444
Query: 556 HAINAGSAVV----PQA------PFGGFKESGIGRELGKAALDEYTELKTVT 597
+ +V P + FGG K +G GRE G A +Y T T
Sbjct: 445 GPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAWKQYMRRSTCT 496
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 10/184 (5%)
Query: 72 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R ++ E I+D G+P+D +V GP + L ++ ++GG
Sbjct: 308 RLFIHESIHDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGT 367
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
+ GGK G ++EPT+ + + D IA E F P+ + KF+ +EV N+ K G
Sbjct: 368 VVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQG 427
Query: 192 LASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGG-----KLEAGGKRKG 246
L+S I T D F GS D + +N SG E GG K GG+ G
Sbjct: 428 LSSSIFTK--DLGRIFRWLGPKGS-DCGIVN--VNIPTSGAEIGGAFGGEKHTGGGRESG 482
Query: 247 DKGY 250
+
Sbjct: 483 SDAW 486
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 225 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL 284
L ++ ++GG + GGK G ++EPT+ + + D IA E F P+ + KF+
Sbjct: 355 LGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNE 414
Query: 285 DEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINC--YQAVVPQA------PF 336
+EV N+ K GL+S I T D F GS +C +P + F
Sbjct: 415 EEVFAWNNEVKQGLSSSIFTK--DLGRIFRWLGPKGS---DCGIVNVNIPTSGAEIGGAF 469
Query: 337 GGFKESGIGRELGKAALDEYTELKTVT 363
GG K +G GRE G A +Y T T
Sbjct: 470 GGEKHTGGGRESGSDAWKQYMRRSTCT 496
>pdb|4H7N|A Chain A, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|B Chain B, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|C Chain C, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|D Chain D, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis
Length = 474
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 21/236 (8%)
Query: 376 MAAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCFVCAGS------RTYVQED 425
+A AA LELGGK P ++ A++++A + V G R YV E
Sbjct: 218 VAETAARRFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAES 277
Query: 426 IYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK- 484
++ F P + GP + + + ++I VE+G + GGK
Sbjct: 278 KFEEFYHQLIAKAHRLQLAYPLVEDGAIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKV 337
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
+ G++ PTV +NV K+ EE FGP+ + F ++E + ANDT YGL++ +
Sbjct: 338 EELGGGWWCRPTVXTNVNHSXKVXTEETFGPIXPVXPFPDVEEAVYLANDTIYGLSAAVF 397
Query: 545 TTNIDTANTFAHAINAGSAVVPQAPF---------GGFKESGI-GRELGKAALDEY 590
+ D A A +NAG+ + A F SG+ G +G A L +
Sbjct: 398 AGSEDEALKVARQLNAGAISINDAALTAXXHEGEKNAFNFSGLGGSRVGAAGLKRF 453
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 61 KSCLSPLAYRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLN 120
+SCLS R YV E ++ F P + GP + + +
Sbjct: 264 QSCLS----IERIYVAESKFEEFYHQLIAKAHRLQLAYPLVEDGAIGPIIAEKQAGIIND 319
Query: 121 YIKSGVEQGGKLEAGGK-RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 179
+I VE+G + GGK + G++ PTV +NV K+ EE FGP+ + F ++
Sbjct: 320 HILDAVEKGAVIHCGGKVEELGGGWWCRPTVXTNVNHSXKVXTEETFGPIXPVXPFPDVE 379
Query: 180 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVD 217
E + ANDT YGL++ + + D A A +NAG++
Sbjct: 380 EAVYLANDTIYGLSAAVFAGSEDEALKVARQLNAGAIS 417
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 214 GSVDAEMFTKVLN-YIKSGVEQGGKLEAGGK-RKGDKGYFIEPTVFSNVTDDFKIAREEI 271
G + AE ++N +I VE+G + GGK + G++ PTV +NV K+ EE
Sbjct: 306 GPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVXTNVNHSXKVXTEET 365
Query: 272 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQA 329
FGP+ + F ++E + ANDT YGL++ + + D A A +NAG++ IN A
Sbjct: 366 FGPIXPVXPFPDVEEAVYLANDTIYGLSAAVFAGSEDEALKVARQLNAGAISINDAALTA 425
Query: 330 VVPQAPFGGFKESGI-GRELGKAALDEY 356
+ F SG+ G +G A L +
Sbjct: 426 XXHEGEKNAFNFSGLGGSRVGAAGLKRF 453
>pdb|4E4G|A Chain A, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|B Chain B, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|C Chain C, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|D Chain D, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|E Chain E, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|F Chain F, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|G Chain G, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|H Chain H, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
Length = 521
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 108/243 (44%), Gaps = 25/243 (10%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVDMAYYYC----FVCAGSRTY-------VQEDIYD 428
AA N KR G K+ +I DAD+D A + AG R V E+ +
Sbjct: 260 AAXNGKRAQCFGGAKNHXIIXPDADLDQAANALIGAGYGSAGERCXAISVAVPVGEETAN 319
Query: 429 TFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG---KR 485
G D+ GP V E ++ + I SG+EQG KL G K
Sbjct: 320 RLIDKLVPXVESLRIGPYTDEKADXGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKL 379
Query: 486 KG-DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
+G + G+FI +F +VT D I + EIFGPV ++++ + +E + +YG I
Sbjct: 380 QGYENGHFIGGCLFDDVTPDXDIYKTEIFGPVLSVVRARNYEEALSLPXKHEYGNGVAIY 439
Query: 545 TTNIDTANTFAHAINAGSA------VVPQA--PFGGFKESGIG--RELGKAALDEYTELK 594
T + D A FA IN G VP A FGG+K S G + G ++ +T K
Sbjct: 440 TRDGDAARDFASRINIGXVGVNVPIPVPLAYHSFGGWKSSSFGDLNQHGTDSIKFWTRTK 499
Query: 595 TVT 597
T+T
Sbjct: 500 TIT 502
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGG---KRKG-DKGYFIEPTVFSNVTDDFKIAREEI 271
V E ++ + I SG+EQG KL G K +G + G+FI +F +VT D I + EI
Sbjct: 348 VTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDXDIYKTEI 407
Query: 272 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVV 331
FGPV ++++ + +E + +YG I T + D A FA IN G V +N V
Sbjct: 408 FGPVLSVVRARNYEEALSLPXKHEYGNGVAIYTRDGDAARDFASRINIGXVGVNV-PIPV 466
Query: 332 PQA--PFGGFKESGIG--RELGKAALDEYTELKTVT 363
P A FGG+K S G + G ++ +T KT+T
Sbjct: 467 PLAYHSFGGWKSSSFGDLNQHGTDSIKFWTRTKTIT 502
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 101 DKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEAGG---KRKG-DKGYFIEPTVFSNVTD 156
D+ GP V ++ + I SG+EQG KL G K +G + G+FI +F +VT
Sbjct: 339 DEKADXGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTP 398
Query: 157 DFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSV 216
D I + EIFGPV ++++ + +E + +YG I T + D A FA IN G V
Sbjct: 399 DXDIYKTEIFGPVLSVVRARNYEEALSLPXKHEYGNGVAIYTRDGDAARDFASRINIGXV 458
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
W + PA+A G +LKP+E+ P + +A L +AG P G+++V+ G
Sbjct: 181 WXFAPAIACGNAFILKPSERDPSVPIRLAELXIEAGLPAGILNVVNG 227
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 23/242 (9%)
Query: 382 SNLKRVSLELGGKSPLVICADAD----VDMAYYYCF------VCAGSRTYVQEDIYDTFX 431
+N+K++ E+GGK+ ++I DAD V Y F A SR V + +YD F
Sbjct: 773 ANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVYDKFI 832
Query: 432 XXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 491
G D + G D + + Y + G +G L G+ GY
Sbjct: 833 ERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAGE-GY 891
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTN---- 547
F+ T+ + + +IA+EEIFGPV +++ K D+ IE AN T++ L GI + +
Sbjct: 892 FVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHL 951
Query: 548 ------IDTANTFAHAINAGSAVVPQAPFGGFKESGIGRELGKA-ALDEYTELKTVTESP 600
N + + N G A+V + PFGG + SG+G + G L + + + VTE+
Sbjct: 952 AKARREFRVGNLYINRNNTG-ALVERQPFGGARMSGVGTKAGGPDYLLHFMDPRVVTENT 1010
Query: 601 LR 602
+R
Sbjct: 1011 MR 1012
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 242 GKRKGD----------KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERA 291
GKR+G +GYF+ T+ + + +IA+EEIFGPV +++ K D+ IE A
Sbjct: 873 GKREGHVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWA 932
Query: 292 NDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQ--AVVPQAPFGGFKESGIGRELG 349
N T++ L GI + + + G+++IN A+V + PFGG + SG+G + G
Sbjct: 933 NSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGTKAG 992
Query: 350 KA-ALDEYTELKTVTESPLR 368
L + + + VTE+ +R
Sbjct: 993 GPDYLLHFMDPRVVTENTMR 1012
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR V + +YD F G D + G D + Y + G +G
Sbjct: 819 SRVIVLDAVYDKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGH 878
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
L G+ GYF+ T+ + + +IA+EEIFGPV +++ K D+ IE AN T++
Sbjct: 879 VLYESPVPAGE-GYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQF 937
Query: 191 GLASGIVTTN 200
L GI + +
Sbjct: 938 ALTGGIFSRS 947
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPY 58
A+ G V+ KP+ T + ++ L ++AG P+GV + PG G + Y
Sbjct: 690 AIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDY 739
>pdb|2ID2|A Chain A, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|B Chain B, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|C Chain C, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|D Chain D, Gapn T244s Mutant X-Ray Structure At 2.5 A
Length = 475
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 382 SNLKRVSLELGGKSPLVICADADVDM--------AYYYC--FVCAGSRTYVQEDIYDTFX 431
+ ++ + LELGGK ++ DAD+++ A+ Y A R V E + D
Sbjct: 242 AGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELV 301
Query: 432 XXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 491
G+P D + P +D + V I ++G KR+G+
Sbjct: 302 EKIREKVLALTIGNPEDDA-DITPLIDTKSADYVEGLINDANDKGATALTEIKREGN--- 357
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 551
I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I T + A
Sbjct: 358 LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRA 417
Query: 552 NTFAHAINAGSAVVPQA--------PFGGFKESGIGRELGKAALDEYTELKTVT 597
A + G+ + PF G K+SG G + K +++ T +K+V
Sbjct: 418 FGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVV 471
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 243 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 302
KR+G+ I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I
Sbjct: 353 KREGN---LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASI 409
Query: 303 VTTNIDTANTFAHAINAGSVWINC-YQAVVPQAPFGGFKESGIGRELGKAALDEYTELKT 361
T + A A + G+V IN Q PF G K+SG G + K +++ T +K+
Sbjct: 410 FTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKS 469
Query: 362 VT 363
V
Sbjct: 470 VV 471
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 5 KWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
K PAL AG + KP Q ++ L +A +AG P GV + + G G
Sbjct: 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRG 210
>pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
Length = 475
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 382 SNLKRVSLELGGKSPLVICADADVDM--------AYYYC--FVCAGSRTYVQEDIYDTFX 431
+ ++ + LELGGK ++ DAD+++ A+ Y A R V E + D
Sbjct: 242 AGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELV 301
Query: 432 XXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 491
G+P D + P +D + V I ++G KR+G+
Sbjct: 302 EKIREKVLALTIGNPEDDA-DITPLIDTKSADYVEGLINDANDKGATALTEIKREGN--- 357
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 551
I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I T + A
Sbjct: 358 LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRA 417
Query: 552 NTFAHAINAGSAVVPQA--------PFGGFKESGIGRELGKAALDEYTELKTVT 597
A + G+ + PF G K+SG G + K +++ T +K+V
Sbjct: 418 FGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVV 471
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 243 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 302
KR+G+ I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I
Sbjct: 353 KREGN---LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASI 409
Query: 303 VTTNIDTANTFAHAINAGSVWINC-YQAVVPQAPFGGFKESGIGRELGKAALDEYTELKT 361
T + A A + G+V IN Q PF G K+SG G + K +++ T +K+
Sbjct: 410 FTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKS 469
Query: 362 VT 363
V
Sbjct: 470 VV 471
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 5 KWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
K PAL AG + KP Q ++ L +A +AG P GV + + G G
Sbjct: 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRG 210
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 382 SNLKRVSLELGGKSPLVICADADVDM--------AYYYC--FVCAGSRTYVQEDIYDTFX 431
+ ++ + LELGGK ++ DAD+++ A+ Y A R V E + D
Sbjct: 242 AGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRSTAVKRVLVMESVADELV 301
Query: 432 XXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 491
G+P D + P +D + V I ++G KR+G+
Sbjct: 302 EKIREKVLALTIGNPEDDA-DITPLIDTKSADYVEGLINDANDKGATALTEIKREGN--- 357
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 551
I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I T + A
Sbjct: 358 LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRA 417
Query: 552 NTFAHAINAGSAVVPQA--------PFGGFKESGIGRELGKAALDEYTELKTVT 597
A + G+ + PF G K+SG G + K +++ T +K+V
Sbjct: 418 FGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVV 471
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 243 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 302
KR+G+ I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I
Sbjct: 353 KREGN---LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASI 409
Query: 303 VTTNIDTANTFAHAINAGSVWINC-YQAVVPQAPFGGFKESGIGRELGKAALDEYTELKT 361
T + A A + G+V IN Q PF G K+SG G + K +++ T +K+
Sbjct: 410 FTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKS 469
Query: 362 VT 363
V
Sbjct: 470 VV 471
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 5 KWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
K PAL AG + KP Q ++ L +A +AG P GV + + G G
Sbjct: 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRG 210
>pdb|2ESD|A Chain A, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|B Chain B, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|C Chain C, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|D Chain D, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2QE0|A Chain A, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|B Chain B, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|C Chain C, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|D Chain D, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement
Length = 475
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 22/234 (9%)
Query: 382 SNLKRVSLELGGKSPLVICADADVDM--------AYYYC--FVCAGSRTYVQEDIYDTFX 431
+ ++ + L LGGK ++ DAD+++ A+ Y A R V E + D
Sbjct: 242 AGMRPIMLALGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELV 301
Query: 432 XXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 491
G+P D + P +D + V I ++G KR+G+
Sbjct: 302 EKIREKVLALTIGNPEDDA-DITPLIDTKSADYVEGLINDANDKGATALTEIKREGN--- 357
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 551
I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I T + A
Sbjct: 358 LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRA 417
Query: 552 NTFAHAINAGSAVVPQA--------PFGGFKESGIGRELGKAALDEYTELKTVT 597
A + G+ + PF G K+SG G + K +++ T +K+V
Sbjct: 418 FGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVV 471
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 243 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 302
KR+G+ I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL + I
Sbjct: 353 KREGN---LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASI 409
Query: 303 VTTNIDTANTFAHAINAGSVWINC-YQAVVPQAPFGGFKESGIGRELGKAALDEYTELKT 361
T + A A + G+V IN Q PF G K+SG G + K +++ T +K+
Sbjct: 410 FTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKS 469
Query: 362 VT 363
V
Sbjct: 470 VV 471
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 4/145 (2%)
Query: 72 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R V E + D G+P D + P +D V I ++G
Sbjct: 289 RVLVMESVADELVEKIREKVLALTIGNPEDDA-DITPLIDTKSADYVEGLINDANDKGAT 347
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
KR+G+ I P +F VT D ++A EE FGPV II+ +++E IE +N ++YG
Sbjct: 348 ALTEIKREGN---LICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYG 404
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
L + I T + A A + G+V
Sbjct: 405 LQASIFTNDFPRAFGIAEQLEVGTV 429
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 5 KWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
K PAL AG + KP Q ++ L +A +AG P GV + + G G
Sbjct: 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRG 210
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 36/251 (14%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYC----FVCAGSRTY--------- 421
I+ AAA +L V+LELGGKSP + + D+D+A F+ +G
Sbjct: 211 IIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDP 270
Query: 422 -VQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
+Q I + G+ KS G + A F +V+ G+ +G K+
Sbjct: 271 SIQNQIVEKLKKSLKEFY-----GEDAKKSRDYGRIISARHFQRVM-----GLIEGQKVA 320
Query: 481 AGGKRKGDKG-YFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGL 539
GG GD +I PT+ ++V + +EEIFGPV I+ ++L+E I+ N + L
Sbjct: 321 YGGT--GDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPL 378
Query: 540 ASGIVTTNIDT-----ANTFAHAINAGSAVV----PQAPFGGFKESGIGRELGKAALDEY 590
A + ++N A T + + A +V PFGG SG+G GK + + +
Sbjct: 379 ALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSFETF 438
Query: 591 TELKTVTESPL 601
+ ++ PL
Sbjct: 439 SHRRSCLVRPL 449
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKG-YFIEPTVFSNVTDDFKIAREEIFGP 274
+ A F +V+ G+ +G K+ GG GD +I PT+ ++V + +EEIFGP
Sbjct: 302 ISARHFQRVM-----GLIEGQKVAYGGT--GDAATRYIAPTILTDVDPQSPVMQEEIFGP 354
Query: 275 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVP 332
V I+ ++L+E I+ N + LA + ++N ++G V N +
Sbjct: 355 VLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLH 414
Query: 333 QAPFGGFKESGIGRELGKAALDEYTELKTVTESPL 367
PFGG SG+G GK + + ++ ++ PL
Sbjct: 415 SLPFGGVGNSGMGSYHGKKSFETFSHRRSCLVRPL 449
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 97 GDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDKG-YFIEPTVFSNVT 155
G+ KS G + A F +V+ G+ +G K+ GG GD +I PT+ ++V
Sbjct: 289 GEDAKKSRDYGRIISARHFQRVM-----GLIEGQKVAYGGT--GDAATRYIAPTILTDVD 341
Query: 156 DDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS 215
+ +EEIFGPV I+ ++L+E I+ N + LA + ++N ++G
Sbjct: 342 PQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGG 401
Query: 216 VDA 218
V A
Sbjct: 402 VAA 404
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
Length = 452
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 28/241 (11%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYC----FVCAGSRTYVQED--IYD 428
I+ AAAA +L V+LELGGKSP + D D+D+A F+ +G +T V D + D
Sbjct: 194 IVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMNSG-QTCVAPDYILCD 252
Query: 429 TFXXXXXXXXXXXXXGDPFDKSVQQ----GPQVDAEMFTKVLNYI-KSGVEQGGKLEAGG 483
D + + +Q G ++ F +V I V GG +
Sbjct: 253 PSIQNQIVEKLKKSLKDFYGEDAKQSRDYGRIINDRHFQRVKGLIDNQKVAHGGTWDQSS 312
Query: 484 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
+ +I PT+ +V + +EEIFGPV I+ ++L+E I+ N + LA +
Sbjct: 313 R-------YIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLALYV 365
Query: 544 VTTNIDT-----ANTFAHAINAGSAV----VPQAPFGGFKESGIGRELGKAALDEYTELK 594
+ N A T + + A + VP PFGG SG+G GK + + ++ +
Sbjct: 366 FSNNEKVIKKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYHGKKSFETFSHRR 425
Query: 595 T 595
+
Sbjct: 426 S 426
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 251 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 310
+I PT+ +V + +EEIFGPV I+ ++L+E I+ N + LA + + N
Sbjct: 314 YIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVI 373
Query: 311 NTFAHAINAGSVWIN--CYQAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLR 368
++G V N VP PFGG SG+G GK + + ++ ++ L
Sbjct: 374 KKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYHGKKSFETFSHRRSCLVKSLL 433
Query: 369 SYTSHSIMAAAAASNLKR 386
+ +H + + + R
Sbjct: 434 NEEAHKARYPPSPAKMPR 451
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 145 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 204
+I PT+ +V + +EEIFGPV I+ ++L+E I+ N + LA + + N
Sbjct: 314 YIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVI 373
Query: 205 NTFAHAINAGSVDA 218
++G V A
Sbjct: 374 KKMIAETSSGGVTA 387
>pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
pdb|3HAZ|B Chain B, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
Length = 1001
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 412 CFVCAGSRT------YVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKV 465
F AG R +VQED+ D GDP D + GP +D E ++
Sbjct: 786 AFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRL 845
Query: 466 LNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK-- 523
+I + ++ +L G +G F+ P +F +T+ ++ EE+FGP+ +++++
Sbjct: 846 DAHI-ARMKTEARLHFAG--PAPEGCFVAPHIF-ELTEAGQLT-EEVFGPILHVVRYRPE 900
Query: 524 TLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS---------AVVPQAPFGGFK 574
L+ V+ T YGL G+ + D+ + G+ AVV PFGG
Sbjct: 901 NLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNG 960
Query: 575 ESGIGRELG 583
SG G + G
Sbjct: 961 LSGTGPKAG 969
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 134/345 (38%), Gaps = 52/345 (15%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSPLA 68
AL AG V+ KPAEQTP A AL +AG P + ++ G G + A ++ +
Sbjct: 673 ALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRIGAALTAHPDIAGVV 732
Query: 69 YRSRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQ 128
+ T V I + + GP V + T +N + +
Sbjct: 733 FTGSTEVARSINRAL-------------------AAKDGPIVPLIAETGGINAMIA---- 769
Query: 129 GGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDT 188
D E VT F+ A + ++ D +IE
Sbjct: 770 ------------DATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGA 817
Query: 189 KYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDK 248
L G D ++ H +D E ++ +I + ++ +L G +
Sbjct: 818 ARELKIG------DPSDVATHV--GPVIDVEAKQRLDAHI-ARMKTEARLHFAGP--APE 866
Query: 249 GYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYGLASGIVTTN 306
G F+ P +F +T+ ++ EE+FGP+ +++++ L+ V+ T YGL G+ +
Sbjct: 867 GCFVAPHIF-ELTEAGQLT-EEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRI 924
Query: 307 IDTANTFAHAINAGSVWI--NCYQAVVPQAPFGGFKESGIGRELG 349
D+ + G++++ N AVV PFGG SG G + G
Sbjct: 925 DDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAG 969
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 12/182 (6%)
Query: 74 YVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLE 133
+VQED+ D GDP D + GP +D ++ +I + ++ +L
Sbjct: 801 FVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHI-ARMKTEARLH 859
Query: 134 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYG 191
G +G F+ P +F +T+ ++ EE+FGP+ +++++ L+ V+ T YG
Sbjct: 860 FAG--PAPEGCFVAPHIF-ELTEAGQLT-EEVFGPILHVVRYRPENLERVLRAIERTGYG 915
Query: 192 LASGIVTTNIDTANTFAHAINAGS--VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKG 249
L G+ + D+ + G+ V+ M V+ G G L G + G
Sbjct: 916 LTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFG---GNGLSGTGPKAGGPH 972
Query: 250 YF 251
Y
Sbjct: 973 YL 974
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 386 RVSLELGGKSPLVICADADVDM--------AYYY----CFVCAGSRTYVQEDIYDTFXXX 433
R++ E GGK+ + ADV+ A+ Y C C SR YV ++
Sbjct: 313 RLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSAC--SRLYVPHSLWPQIKGR 370
Query: 434 XXXXXXXXXXGDPF-DKSVQQGPQVDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGY 491
GDP D +DA+ F ++ +++ + AGGK GY
Sbjct: 371 LLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGY 430
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDEVIERANDTKYGLASGIVTT 546
F+EP + + I +EEIFGPV ++ K+K ++++ + T YGL + +
Sbjct: 431 FVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVD--STTSYGLTGAVFSQ 488
Query: 547 NIDT-----------ANTFAHAINAGSAVVPQAPFGGFKESGIGRELG 583
+ D A F + ++V Q PFGG + SG + G
Sbjct: 489 DKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPG 536
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 216 VDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGP 274
+DA+ F ++ +++ + AGGK GYF+EP + + I +EEIFGP
Sbjct: 395 IDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGP 454
Query: 275 VQTII-----KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAIN--AGSVWIN-- 325
V ++ K+K ++++ + T YGL + + + D + AG+ +IN
Sbjct: 455 VLSVYVYPDDKYKETLQLVD--STTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDK 512
Query: 326 CYQAVVPQAPFGGFKESGIGRELG 349
++V Q PFGG + SG + G
Sbjct: 513 STGSIVGQQPFGGARASGTNDKPG 536
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR YV ++ GDP + G AV+ K IK +E
Sbjct: 355 SRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDF---GTFFSAVIDAKSFARIKKWLEHAR 411
Query: 131 K-----LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDE 180
+ AGGK GYF+EP + + I +EEIFGPV ++ K+K +
Sbjct: 412 SSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQ 471
Query: 181 VIERANDTKYGLASGIVTTNID 202
+++ + T YGL + + + D
Sbjct: 472 LVD--STTSYGLTGAVFSQDKD 491
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 8 PALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM 54
PAL G VL KP++ L + V + ++AG P +I +P GP+
Sbjct: 226 PALM-GNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPL 271
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 386 RVSLELGGKSPLVICADADVDM--------AYYY----CFVCAGSRTYVQEDIYDTFXXX 433
R++ E GGK+ + ADV+ A+ Y C CA R YV ++
Sbjct: 313 RLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACA--RLYVPHSLWPQIKGR 370
Query: 434 XXXXXXXXXXGDPF-DKSVQQGPQVDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGY 491
GDP D +DA+ F ++ +++ + AGGK GY
Sbjct: 371 LLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGY 430
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDEVIERANDTKYGLASGIVTT 546
F+EP + + I +EEIFGPV ++ K+K ++++ + T YGL + +
Sbjct: 431 FVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVD--STTSYGLTGAVFSQ 488
Query: 547 NIDT-----------ANTFAHAINAGSAVVPQAPFGGFKESGIGRELG 583
+ D A F + ++V Q PFGG + SG + G
Sbjct: 489 DKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPG 536
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 216 VDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGP 274
+DA+ F ++ +++ + AGGK GYF+EP + + I +EEIFGP
Sbjct: 395 IDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGP 454
Query: 275 VQTII-----KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAIN--AGSVWIN-- 325
V ++ K+K ++++ + T YGL + + + D + AG+ +IN
Sbjct: 455 VLSVYVYPDDKYKETLQLVD--STTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDK 512
Query: 326 CYQAVVPQAPFGGFKESGIGRELG 349
++V Q PFGG + SG + G
Sbjct: 513 STGSIVGQQPFGGARASGTNDKPG 536
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R YV ++ GDP + G AV+ K IK +E
Sbjct: 355 ARLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDF---GTFFSAVIDAKSFARIKKWLEHAR 411
Query: 131 K-----LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDE 180
+ AGGK GYF+EP + + I +EEIFGPV ++ K+K +
Sbjct: 412 SSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQ 471
Query: 181 VIERANDTKYGLASGIVTTNID 202
+++ + T YGL + + + D
Sbjct: 472 LVD--STTSYGLTGAVFSQDKD 491
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 8 PALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM 54
PAL G VL KP++ L + V + ++AG P +I +P GP+
Sbjct: 226 PALM-GNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPL 271
>pdb|3LNS|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
Length = 457
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 25/244 (10%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCFVCAGSRTYVQEDIYDTF 430
++ AAA +L V LELGGK PL++ DAD+D + F+ +G + +Y +
Sbjct: 221 VVMQAAAKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHY 280
Query: 431 XXXXXXXXXXXXXGDPFDKSVQQGPQVDA--EMFT-KVLNYIKSGVE-QGGKLEAGGKRK 486
++ + P++++ ++ T + + + S +E G++ G +
Sbjct: 281 SVKDALLERL------VERVKTELPEINSTGKLVTERQVQRLVSLLEATQGQVLVGSQAD 334
Query: 487 GDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVT 545
K + TV V + + EE+FGP+ +++F ++ I++ N LA +
Sbjct: 335 VSKRA-LSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFG 393
Query: 546 TNIDTANTFAHAINAGSAVV---------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
++D A + I +G A V P PFGG SG+G G + +T K+V
Sbjct: 394 KDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSV 453
Query: 597 TESP 600
P
Sbjct: 454 RIVP 457
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 255 TVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVTTNIDTANTF 313
TV V + + EE+FGP+ +++F ++ I++ N LA + ++D A
Sbjct: 343 TVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGI 402
Query: 314 AHAINAGSVWIN--CYQAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESP 366
+ I +G +N A P PFGG SG+G G + +T K+V P
Sbjct: 403 INQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRIVP 457
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 149 TVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVTTNIDTANTF 207
TV V + + EE+FGP+ +++F ++ I++ N LA + ++D A
Sbjct: 343 TVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGI 402
Query: 208 AHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAG-GKRKGDKGYF 251
+ I +G DA++ +L+ + GG +G G+ G Y
Sbjct: 403 INQIQSG--DAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYL 445
>pdb|3LV1|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
Length = 457
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 25/244 (10%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCFVCAGSRTYVQEDIYDTF 430
++ AAA +L V LELGGK PL++ DAD+D + F+ +G + +Y +
Sbjct: 221 VVMQAAAKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTCIAPDYLYVHY 280
Query: 431 XXXXXXXXXXXXXGDPFDKSVQQGPQVDA--EMFT-KVLNYIKSGVE-QGGKLEAGGKRK 486
++ + P++++ ++ T + + + S +E G++ G +
Sbjct: 281 SVKDALLERL------VERVKTELPEINSTGKLVTERQVQRLVSLLEATQGQVLVGSQAD 334
Query: 487 GDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVT 545
K + TV V + + EE+FGP+ +++F ++ I++ N LA +
Sbjct: 335 VSKRA-LSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFG 393
Query: 546 TNIDTANTFAHAINAGSAVV---------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
++D A + I +G A V P PFGG SG+G G + +T K+V
Sbjct: 394 KDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSV 453
Query: 597 TESP 600
P
Sbjct: 454 RIVP 457
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 255 TVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVTTNIDTANTF 313
TV V + + EE+FGP+ +++F ++ I++ N LA + ++D A
Sbjct: 343 TVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGI 402
Query: 314 AHAINAGSVWIN--CYQAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESP 366
+ I +G +N A P PFGG SG+G G + +T K+V P
Sbjct: 403 INQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRIVP 457
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 149 TVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVTTNIDTANTF 207
TV V + + EE+FGP+ +++F ++ I++ N LA + ++D A
Sbjct: 343 TVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGI 402
Query: 208 AHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAG-GKRKGDKGYF 251
+ I +G DA++ +L+ + GG +G G+ G Y
Sbjct: 403 INQIQSG--DAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYL 445
>pdb|3V9J|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9J|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9K|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9K|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9L|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|3V9L|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|4E3X|A Chain A, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
pdb|4E3X|B Chain B, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
Length = 563
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 34/228 (14%)
Query: 386 RVSLELGGKSPLVICADADVDM--------AYYY----CFVCAGSRTYVQEDIYDTFXXX 433
R++ E GGK+ + + ADVD A+ Y C C SR YV + ++
Sbjct: 310 RLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSAC--SRLYVPKSLWPQIKGR 367
Query: 434 XXXXXXXXXXGDPF-DKSVQQGPQVDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGY 491
GDP D +DA+ F ++ +++ + AGG+ GY
Sbjct: 368 LLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGY 427
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDEVIERANDTKYGLASGIVTT 546
++EP + + I +EEIFGPV T+ K++ ++++ + T YGL +
Sbjct: 428 YVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVD--STTSYGLTGAVFAQ 485
Query: 547 N-----------IDTANTFAHAINAGSAVVPQAPFGGFKESGIGRELG 583
+ + A F + +VV Q PFGG + SG + G
Sbjct: 486 DKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPG 533
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 216 VDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGP 274
+DA+ F ++ +++ + AGG+ GY++EP + + I +EEIFGP
Sbjct: 392 IDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGP 451
Query: 275 VQTII-----KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAIN--AGSVWIN-- 325
V T+ K++ ++++ + T YGL + + + AG+ +IN
Sbjct: 452 VLTVYVYPDDKYRETLKLVD--STTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDK 509
Query: 326 CYQAVVPQAPFGGFKESGIGRELG 349
+VV Q PFGG + SG + G
Sbjct: 510 STGSVVGQQPFGGARASGTNDKPG 533
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 71 SRTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR YV + ++ GDP + G AV+ K IK +E
Sbjct: 352 SRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDF---GTFFSAVIDAKAFARIKKWLEHAR 408
Query: 131 K-----LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDE 180
+ AGG+ GY++EP + + I +EEIFGPV T+ K++ +
Sbjct: 409 SSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLK 468
Query: 181 VIERANDTKYGLASGI 196
+++ + T YGL +
Sbjct: 469 LVD--STTSYGLTGAV 482
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 7 GPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
PAL G VL KP++ L + V + ++AG P +I +P GP
Sbjct: 222 APALM-GNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGP 267
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 34/228 (14%)
Query: 386 RVSLELGGKSPLVICADADVDM--------AYYY----CFVCAGSRTYVQEDIYDTFXXX 433
R++ E GGK+ + ADV+ A+ Y C C R YV ++
Sbjct: 313 RLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACL--RLYVPHSLWPQIKGR 370
Query: 434 XXXXXXXXXXGDPF-DKSVQQGPQVDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGY 491
GDP D +DA+ F ++ +++ + AGGK GY
Sbjct: 371 LLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGY 430
Query: 492 FIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDEVIERANDTKYGLASGIVTT 546
F+EP + + I +EEIFGPV ++ K+K ++++ + T YGL + +
Sbjct: 431 FVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVD--STTSYGLTGAVFSQ 488
Query: 547 NIDT-----------ANTFAHAINAGSAVVPQAPFGGFKESGIGRELG 583
+ D A F + ++V Q PFGG + SG + G
Sbjct: 489 DKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPG 536
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 216 VDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGP 274
+DA+ F ++ +++ + AGGK GYF+EP + + I +EEIFGP
Sbjct: 395 IDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGP 454
Query: 275 VQTII-----KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAIN--AGSVWIN-- 325
V ++ K+K ++++ + T YGL + + + D + AG+ +IN
Sbjct: 455 VLSVYVYPDDKYKETLQLVD--STTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDK 512
Query: 326 CYQAVVPQAPFGGFKESGIGRELG 349
++V Q PFGG + SG + G
Sbjct: 513 STGSIVGQQPFGGARASGTNDKPG 536
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 72 RTYVQEDIYDTFXXXXXXXXXXXXXGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R YV ++ GDP + G AV+ K IK +E
Sbjct: 356 RLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDF---GTFFSAVIDAKSFARIKKWLEHARS 412
Query: 132 -----LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTII-----KFKTLDEV 181
+ AGGK GYF+EP + + I +EEIFGPV ++ K+K ++
Sbjct: 413 SPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQL 472
Query: 182 IERANDTKYGLASGIVTTNID 202
++ + T YGL + + + D
Sbjct: 473 VD--STTSYGLTGAVFSQDKD 491
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 8 PALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM 54
PAL G VL KP++ L + V + ++AG P +I +P GP+
Sbjct: 226 PALM-GNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPL 271
>pdb|3JU8|A Chain A, Crystal Structure Of Succinylglutamic Semialdehyde
Dehydrogenase From Pseudomonas Aeruginosa.
pdb|3JU8|B Chain B, Crystal Structure Of Succinylglutamic Semialdehyde
Dehydrogenase From Pseudomonas Aeruginosa
Length = 490
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 85/219 (38%), Gaps = 27/219 (12%)
Query: 385 KRVSLELGGKSPLVICADADVDMAYY----YCFVCAGSRTYVQEDIY-------DTFXXX 433
K ++LE GG +PLV+ AD+D A Y F+ AG R + D
Sbjct: 243 KILALEXGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALLAR 302
Query: 434 XXXXXXXXXXGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQ----GGKLEAGGKRKGDK 489
G FD+ Q P A + ++ E G + + D
Sbjct: 303 LVAVSATLRVGR-FDE--QPAPFXGAVISLSAAEHLLKAQEHLIGKGAQPLLAXTQPIDG 359
Query: 490 GYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNID 549
+ P + +V+ + EE FGP+ +I++ I AN T+YGLA+G+++ + +
Sbjct: 360 AALLTPGIL-DVSAVAERPDEEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSRE 418
Query: 550 TANTFAHAINAG--------SAVVPQAPFGGFKESGIGR 580
F AG + APFGG SG R
Sbjct: 419 RFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGNHR 457
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 269 EEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSV-WINCY 327
EE FGP+ +I++ I AN T+YGLA+G+++ + + F AG V W
Sbjct: 379 EEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQL 438
Query: 328 QAVVPQAPFGGFKESGIGR 346
APFGG SG R
Sbjct: 439 TGAASSAPFGGIGASGNHR 457
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 163 EEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFT 222
EE FGP+ +I++ I AN T+YGLA+G+++ + + F AG V+ +
Sbjct: 379 EEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGIVN---WN 435
Query: 223 KVLNYIKSGVEQGGKLEAGGKR 244
K L S GG +G R
Sbjct: 436 KQLTGAASSAPFGGIGASGNHR 457
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 8 PALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
PAL AG V+ KP+E TP A QAG P GV++++ G
Sbjct: 162 PALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQG 204
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 244 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 303
R +K I P V DD+ ++ ++ + K +DE IE G + I+
Sbjct: 299 RGCEKTREIVPDVVPATEDDWPTEYLDLIIAIKVV---KNVDEAIEHIKKYSTGHSESIL 355
Query: 304 TTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIG 345
T N A F I+A +V++N FG E GI
Sbjct: 356 TENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGIS 397
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 268 REEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCY 327
R E PV I +D IE N+ IVT + D A F +++ SV +N
Sbjct: 337 RTEYLAPVLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNAS 396
Query: 328 QAVVPQAPFGGFKESGIGRE----LGKAALDEYTELKTV 362
FG E GI + G L+ T LK V
Sbjct: 397 TRFADGFEFGLGAEIGISNDKLHARGPVGLEGLTSLKYV 435
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 509 REEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSAVVPQA 568
R E PV I +D IE N+ IVT + D A F +++ S +V +
Sbjct: 337 RTEYLAPVLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNAS 396
Query: 569 P-FGGFKESGIGRELG 583
F E G+G E+G
Sbjct: 397 TRFADGFEFGLGAEIG 412
>pdb|2Y5D|A Chain A, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y5D|B Chain B, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 W-KWGPALAAGCPVLLKPAEQTP-LTALYVAALTQQAGFPDGVISVLPG 50
W K PAL +G PV++KPA T LT VA + P G +S++ G
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICG 217
>pdb|2Y51|A Chain A, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y51|B Chain B, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 W-KWGPALAAGCPVLLKPAEQTP-LTALYVAALTQQAGFPDGVISVLPG 50
W K PAL +G PV++KPA T LT VA + P G +S++ G
Sbjct: 169 WAKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICG 217
>pdb|2VRO|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
pdb|2VRO|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
Length = 532
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 W-KWGPALAAGCPVLLKPAEQTP-LTALYVAALTQQAGFPDGVISVLPG 50
W K PAL +G PV++KPA T LT VA + P G +S++ G
Sbjct: 167 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICG 215
>pdb|2Y53|A Chain A, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y53|B Chain B, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 W-KWGPALAAGCPVLLKPAEQTP-LTALYVAALTQQAGFPDGVISVLPG 50
W K PAL +G PV++KPA T LT VA + P G +S++ G
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICG 217
>pdb|2Y52|A Chain A, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y52|B Chain B, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 W-KWGPALAAGCPVLLKPAEQTP-LTALYVAALTQQAGFPDGVISVLPG 50
W K PAL +G PV++KPA T LT VA + P G +S++ G
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICG 217
>pdb|4EE7|A Chain A, Crystal Structure Of The Novel Phenazine Prenyltransferase
Epzp In Complex With S-Thiolodiphosphate (Methylated)
pdb|4EE7|B Chain B, Crystal Structure Of The Novel Phenazine Prenyltransferase
Epzp In Complex With S-Thiolodiphosphate (Methylated)
Length = 304
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 502 TDDFKIAREEIFGPVQTIIKFKTLDEVIERAND--TKYGLASGIVTTNIDTANTFAHAIN 559
T + E G V ++K ++ + + D K+G+A + T ID + + +
Sbjct: 118 TKTWSFPSAEXLGKVSELVKLPSIPDAVAANRDFFEKWGIADMVSTVGIDYSKRTMN-LY 176
Query: 560 AGSAVVPQAPFGGFKESGIGRELGKAAL 587
G V + P G F+E G+ LG+ L
Sbjct: 177 FGGGVGDRVPAGVFEEKGVRAILGELGL 204
>pdb|1EYY|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi
Length = 510
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVAALTQQA----GFPDGVISVLPG 50
ALAAGCPV++K P T+ VA +QA P + ++L G
Sbjct: 162 ALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQG 207
>pdb|4EE8|A Chain A, Crystal Structure Of The Novel Phenazine Prenyltransferase
Epzp (Wildtype)
Length = 304
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 502 TDDFKIAREEIFGPVQTIIKFKTLDEVIERAND--TKYGLASGIVTTNIDTANTFAHAIN 559
T + E G V ++K ++ + + D K+G+A + T ID + + +
Sbjct: 118 TKTWSFPSAEKLGKVSELVKLPSIPDAVAANRDFFEKWGIADMVSTVGIDYSKRTMN-LY 176
Query: 560 AGSAVVPQAPFGGFKESGIGRELGKAAL 587
G V + P G F+E G+ LG+ L
Sbjct: 177 FGGGVGDRVPAGVFEEKGVRAILGELGL 204
>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 528
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVA----ALTQQAGFPDGVISVLPG 50
ALAAGCPV++K P T VA A ++ G GV S++ G
Sbjct: 195 ALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQG 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,307,362
Number of Sequences: 62578
Number of extensions: 797171
Number of successful extensions: 2404
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 370
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)