RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1099
(605 letters)
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 384 bits (989), Expect = e-128
Identities = 129/244 (52%), Positives = 167/244 (68%), Gaps = 17/244 (6%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV----------CAGSRT 420
I AA SNLKRVSLELGGKSP ++ ADAD+D A + A SR
Sbjct: 250 VGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRL 309
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
+V+E IYD FV+++VE+A +G+P V QGPQ+D E + K+L+ I+SG ++G KLE
Sbjct: 310 FVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLE 369
Query: 481 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 540
GG G+KGYFI+PTVFS+VTDD +IA+EEIFGPVQ I+KFK+LD+VI+RAN+T YGL+
Sbjct: 370 CGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLS 429
Query: 541 SGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEYTEL 593
+GI T +ID A T + A+ +G+ V Q PFGGFK SG GRELG+ EYTE+
Sbjct: 430 AGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEV 489
Query: 594 KTVT 597
KTVT
Sbjct: 490 KTVT 493
Score = 274 bits (704), Expect = 1e-85
Identities = 98/196 (50%), Positives = 131/196 (66%), Gaps = 14/196 (7%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
V+ I + + +ERA G N ++ G +D E + K+L+
Sbjct: 311 VEESIYDEFVRRSVERAKKYVLG-------------NPLTPGVSQGPQIDKEQYEKILDL 357
Query: 228 IKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEV 287
I+SG ++G KLE GG G+KGYFI+PTVFS+VTDD +IA+EEIFGPVQ I+KFK+LD+V
Sbjct: 358 IESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDV 417
Query: 288 IERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRE 347
I+RAN+T YGL++GI T +ID A T + A+ +G+VW+NCY V Q PFGGFK SG GRE
Sbjct: 418 IKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRE 477
Query: 348 LGKAALDEYTELKTVT 363
LG+ EYTE+KTVT
Sbjct: 478 LGEYGFHEYTEVKTVT 493
Score = 261 bits (669), Expect = 2e-80
Identities = 81/146 (55%), Positives = 113/146 (77%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR +V+E IYD FV+++VE+A +G+P V QGPQ+D + K+L+ I+SG ++G
Sbjct: 307 SRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGA 366
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KLE GG G+KGYFI+PTVFS+VTDD +IA+EEIFGPVQ I+KFK+LD+VI+RAN+T Y
Sbjct: 367 KLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFY 426
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL++GI T +ID A T + A+ +G+V
Sbjct: 427 GLSAGIFTNDIDKAITVSSALQSGTV 452
Score = 109 bits (274), Expect = 2e-25
Identities = 32/53 (60%), Positives = 44/53 (83%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M WK GPAL+ G V++KPAEQTPLTAL++ +L ++AGFP GV++++PGYGP
Sbjct: 175 MFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGP 227
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 383 bits (986), Expect = e-127
Identities = 125/244 (51%), Positives = 163/244 (66%), Gaps = 17/244 (6%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV----------CAGSRT 420
I AA +SNLKRV+LELGGKSP +I +DAD+D A CAGSRT
Sbjct: 249 IGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRT 308
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
+VQEDIYD FV+++V +A +R VG+PFD +QGPQVD F K+L YI +G ++G KL
Sbjct: 309 FVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 368
Query: 481 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 540
GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ YGLA
Sbjct: 369 CGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLA 428
Query: 541 SGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEYTEL 593
+ + T ++D AN + A+ AG+ Q+PFGG+K SG GRELG+ L YTE+
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 488
Query: 594 KTVT 597
KTVT
Sbjct: 489 KTVT 492
Score = 274 bits (702), Expect = 2e-85
Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 14/196 (7%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
VQ I + ++ + RA G N F G VD F K+L Y
Sbjct: 310 VQEDIYDEFVERSVARAKSRVVG-------------NPFDSKTEQGPQVDETQFKKILGY 356
Query: 228 IKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEV 287
I +G ++G KL GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV
Sbjct: 357 INTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEV 416
Query: 288 IERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRE 347
+ RAN++ YGLA+ + T ++D AN + A+ AG+VW+NCY Q+PFGG+K SG GRE
Sbjct: 417 VGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRE 476
Query: 348 LGKAALDEYTELKTVT 363
LG+ L YTE+KTVT
Sbjct: 477 LGEYGLQAYTEVKTVT 492
Score = 261 bits (669), Expect = 2e-80
Identities = 79/146 (54%), Positives = 108/146 (73%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SRT+VQEDIYD FV+++V +A +R VG+PFD +QGPQVD F K+L YI +G ++G
Sbjct: 306 SRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGA 365
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KL GG D+GYFI+PTVF +V D IA+EEIFGPV I+KFKT++EV+ RAN++ Y
Sbjct: 366 KLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTY 425
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GLA+ + T ++D AN + A+ AG+V
Sbjct: 426 GLAAAVFTKDLDKANYLSQALQAGTV 451
Score = 109 bits (274), Expect = 2e-25
Identities = 35/53 (66%), Positives = 44/53 (83%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M AWK GPALA G V++K AEQTPLTALYVA L ++AGFP GV++++PG+GP
Sbjct: 174 MQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGP 226
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 378 bits (972), Expect = e-125
Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 19/246 (7%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV----------CAGSRT 420
IM + A SN+K+VSLELGGKSPL+I AD D++ A A R
Sbjct: 269 VGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRL 328
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
+V+E I++ FV+K VE+ K+G+P ++ GPQ K++ Y + GV++G L
Sbjct: 329 FVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLV 388
Query: 481 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTKYG 538
GG + G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T++G
Sbjct: 389 CGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFG 448
Query: 539 LASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEYT 591
LASG+ T +I+ A + + AG+ APFGGFK+SG G++LG+AAL+EY
Sbjct: 449 LASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYL 508
Query: 592 ELKTVT 597
+KTVT
Sbjct: 509 RIKTVT 514
Score = 268 bits (688), Expect = 5e-83
Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 16/198 (8%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
V+ I + + +V+E K G N N G K++ Y
Sbjct: 330 VEESIHNQFVQKVVEEVEKMKIG-------------NPLERDTNHGPQNHEAHLRKLVEY 376
Query: 228 IKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLD 285
+ GV++G L GG + G+F +PTVF++V D IA+EE FGP+ I +F +D
Sbjct: 377 CQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVD 436
Query: 286 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIG 345
V+ RAN T++GLASG+ T +I+ A + + AG+V+IN Y APFGGFK+SG G
Sbjct: 437 AVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFG 496
Query: 346 RELGKAALDEYTELKTVT 363
++LG+AAL+EY +KTVT
Sbjct: 497 KDLGEAALNEYLRIKTVT 514
Score = 254 bits (651), Expect = 1e-77
Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 2/148 (1%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R +V+E I++ FV+K VE+ K+G+P ++ GPQ K++ Y + GV++G
Sbjct: 326 GRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGA 385
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDT 188
L GG + G+F +PTVF++V D IA+EE FGP+ I +F +D V+ RAN T
Sbjct: 386 TLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANAT 445
Query: 189 KYGLASGIVTTNIDTANTFAHAINAGSV 216
++GLASG+ T +I+ A + + AG+V
Sbjct: 446 EFGLASGVFTRDINKALYVSDKLQAGTV 473
Score = 109 bits (276), Expect = 1e-25
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
ML+WK LAAG V++KPA+ TPLTAL A LT +AG P GV+++LPG G
Sbjct: 194 MLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGS 246
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 376 bits (968), Expect = e-125
Identities = 98/248 (39%), Positives = 140/248 (56%), Gaps = 21/248 (8%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV----------CAGSRT 420
T +MA+A++S+LK V++ELGGKSPL+I DAD+D A + G+R
Sbjct: 233 TGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRV 292
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
++ F K +E+ ++GDP D++ GP V VL YI+SG Q +L
Sbjct: 293 FIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLL 352
Query: 481 AGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 536
GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ + DE I RANDT+
Sbjct: 353 CGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTE 412
Query: 537 YGLASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDE 589
YGLA+G+VT ++ A+ H + AG + P GG+K+SG+GRE G L
Sbjct: 413 YGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAH 472
Query: 590 YTELKTVT 597
YT +K+V
Sbjct: 473 YTRIKSVQ 480
Score = 268 bits (687), Expect = 4e-83
Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 18/200 (9%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
+ + + +V+ER + G + N G V VL Y
Sbjct: 294 IHRSQQARFEAKVLERVQRIRLG-------------DPQDENTNFGPLVSFPHMESVLGY 340
Query: 228 IKSGVEQGGKLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT 283
I+SG Q +L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ +
Sbjct: 341 IESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDD 400
Query: 284 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESG 343
DE I RANDT+YGLA+G+VT ++ A+ H + AG WIN + + P GG+K+SG
Sbjct: 401 EDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSG 460
Query: 344 IGRELGKAALDEYTELKTVT 363
+GRE G L YT +K+V
Sbjct: 461 VGRENGLTTLAHYTRIKSVQ 480
Score = 252 bits (646), Expect = 3e-77
Identities = 60/150 (40%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R ++ F K +E+ ++GDP D++ GP V VL YI+SG Q
Sbjct: 290 TRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKA 349
Query: 131 KLEAGGKRKGD----KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+L GG+R D KG ++ PTVF++ DD I REEIFGPV +I+ + DE I RAN
Sbjct: 350 RLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRAN 409
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAGSV 216
DT+YGLA+G+VT ++ A+ H + AG
Sbjct: 410 DTEYGLAAGVVTQDLARAHRAIHRLEAGIC 439
Score = 106 bits (268), Expect = 1e-24
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ WK PALAAG ++ KP+E TPLTAL +A + +AG PDGV +VL G G
Sbjct: 158 IALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGR 210
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 373 bits (959), Expect = e-123
Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 20/246 (8%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCFV------CAGSRT 420
T IM AAA +K VSLELGGKSPLV+ D D+D A + CF A SR
Sbjct: 242 TGSKIMTAAA-QLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRL 300
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
+ E I F+ + V+ K+ DP ++ + GP V + K+L ++ + +G +
Sbjct: 301 ILHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATIL 360
Query: 481 AGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 538
GG R KG+FIEPT+ ++VT + +I REE+FGPV + F T +E I+ ANDT YG
Sbjct: 361 TGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYG 420
Query: 539 LASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEYT 591
L + +++ +++ A AG QAP+GG K SG GRELG+ LD Y
Sbjct: 421 LGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYL 480
Query: 592 ELKTVT 597
+K VT
Sbjct: 481 SVKQVT 486
Score = 272 bits (697), Expect = 1e-84
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
+ I + L+ +++ + K + G V + K+L +
Sbjct: 302 LHESIATEFLNRIVKWIKNIKIS-------------DPLEEGCRLGPVVSEGQYEKILKF 348
Query: 228 IKSGVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 285
+ + +G + GG R KG+FIEPT+ ++VT + +I REE+FGPV + F T +
Sbjct: 349 VSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFSTEE 408
Query: 286 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIG 345
E I+ ANDT YGL + +++ +++ A AG VW+NC Q QAP+GG K SG G
Sbjct: 409 EAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFG 468
Query: 346 RELGKAALDEYTELKTVT----ESPLRSYTSHS 374
RELG+ LD Y +K VT E P Y +
Sbjct: 469 RELGEWGLDNYLSVKQVTQYISEEPWGWYQPPA 501
Score = 250 bits (642), Expect = 2e-76
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR + E I F+ + V+ K+ DP ++ + GP V + K+L ++ + +G
Sbjct: 298 SRLILHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGA 357
Query: 131 KLEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDT 188
+ GG R KG+FIEPT+ ++VT + +I REE+FGPV + F T +E I+ ANDT
Sbjct: 358 TILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFSTEEEAIDLANDT 417
Query: 189 KYGLASGIVTTNIDTANTFAHAINAGSV 216
YGL + +++ +++ A AG V
Sbjct: 418 VYGLGAAVISNDLERCERVTKAFKAGIV 445
Score = 106 bits (266), Expect = 2e-24
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M WK PALAAGC +LKP+E LT L + + ++ G P GV+++L G GP
Sbjct: 167 MATWKVAPALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLNILTGLGP 219
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 370 bits (953), Expect = e-122
Identities = 90/248 (36%), Positives = 131/248 (52%), Gaps = 22/248 (8%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCFV------CAGSRT 420
T IM AA +N+ ++LELGGK+P +I DAD ++A + AGSR
Sbjct: 261 TGKHIMKNAA-NNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRI 319
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
VQ I D F + +++ K+G+ FD + GP + E K+ +Y+ +G +
Sbjct: 320 LVQNSIKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIA 379
Query: 481 AGGKRKG----DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 536
GGKR G F EPTV +N +I +EE+FGPV T+ F+T E I+ AND+
Sbjct: 380 VGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSI 439
Query: 537 YGLASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDE 589
YGLA + + +I A A+ + G+ QAP+GG+K+SGIGRELGK L+E
Sbjct: 440 YGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEE 499
Query: 590 YTELKTVT 597
Y K +
Sbjct: 500 YLVSKHIL 507
Score = 267 bits (685), Expect = 1e-82
Identities = 73/200 (36%), Positives = 101/200 (50%), Gaps = 18/200 (9%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
VQ IK K +I+R K G N F G + E K+ +Y
Sbjct: 321 VQNSIKDKFEQALIDRVKKIKLG-------------NGFDADTEMGPVISTEHRNKIESY 367
Query: 228 IKSGVEQGGKLEAGGKRKG----DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKT 283
+ +G + GGKR G F EPTV +N +I +EE+FGPV T+ F+T
Sbjct: 368 MDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFET 427
Query: 284 LDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESG 343
E I+ AND+ YGLA + + +I A A+ + G+VWIN + QAP+GG+K+SG
Sbjct: 428 EQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSG 487
Query: 344 IGRELGKAALDEYTELKTVT 363
IGRELGK L+EY K +
Sbjct: 488 IGRELGKEGLEEYLVSKHIL 507
Score = 249 bits (637), Expect = 2e-75
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR VQ I D F + +++ K+G+ FD + GP + K+ +Y+ +G
Sbjct: 317 SRILVQNSIKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGA 376
Query: 131 KLEAGGKRKG----DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 186
+ GGKR G F EPTV +N +I +EE+FGPV T+ F+T E I+ AN
Sbjct: 377 TIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLAN 436
Query: 187 DTKYGLASGIVTTNIDTANTFAHAINAGSV 216
D+ YGLA + + +I A A+ + G+V
Sbjct: 437 DSIYGLAGAVFSKDIGKAQRVANKLKLGTV 466
Score = 105 bits (264), Expect = 4e-24
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+WK PALA GC +++KP+E TPLT + V L ++ GFP G I+++ G G
Sbjct: 186 QASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLILGAGS 238
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 370 bits (952), Expect = e-122
Identities = 96/247 (38%), Positives = 138/247 (55%), Gaps = 21/247 (8%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV----------CAGSRT 420
T + AAAA +LK V++ELGGKSP+++ DAD++ A + G+R
Sbjct: 240 TGRKVAAAAA-GHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRV 298
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
+VQ+ F++ + A +GDP D + GP V KVL+YI+ G +G L
Sbjct: 299 FVQKKAKARFLENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLI 358
Query: 481 AGGK---RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 537
GG +G +++PTVF++VTDD IAREEIFGPV ++ F DEV+ RAN T++
Sbjct: 359 TGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANATEF 418
Query: 538 GLASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEY 590
GLA G+ T ++ A+ + AG+ + PFGG K+SG GRE AAL+ Y
Sbjct: 419 GLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFGRENSAAALEHY 478
Query: 591 TELKTVT 597
+ELKTV
Sbjct: 479 SELKTVY 485
Score = 267 bits (684), Expect = 2e-82
Identities = 77/199 (38%), Positives = 108/199 (54%), Gaps = 17/199 (8%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
VQ K + L+ + R G + +A + G V KVL+Y
Sbjct: 300 VQKKAKARFLENLKRRTEAMILG-------------DPLDYATHLGPLVSKAQQEKVLSY 346
Query: 228 IKSGVEQGGKLEAGGK---RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL 284
I+ G +G L GG +G +++PTVF++VTDD IAREEIFGPV ++ F
Sbjct: 347 IEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDE 406
Query: 285 DEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGI 344
DEV+ RAN T++GLA G+ T ++ A+ + AG++WIN Y + PFGG K+SG
Sbjct: 407 DEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGF 466
Query: 345 GRELGKAALDEYTELKTVT 363
GRE AAL+ Y+ELKTV
Sbjct: 467 GRENSAAALEHYSELKTVY 485
Score = 251 bits (643), Expect = 2e-76
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R +VQ+ F++ + A +GDP D + GP V KVL+YI+ G +G
Sbjct: 296 TRVFVQKKAKARFLENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGA 355
Query: 131 KLEAGGK---RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 187
L GG +G +++PTVF++VTDD IAREEIFGPV ++ F DEV+ RAN
Sbjct: 356 TLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANA 415
Query: 188 TKYGLASGIVTTNIDTANTFAHAINAGSV 216
T++GLA G+ T ++ A+ + AG++
Sbjct: 416 TEFGLAGGVFTADLARAHRVVDGLEAGTL 444
Score = 106 bits (266), Expect = 2e-24
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ WK PAL AG ++ KP+E TPL AL +A + +AG P G+ +V+ G
Sbjct: 166 IACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRD 218
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 369 bits (950), Expect = e-122
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 24/250 (9%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV----------CAGSRT 420
T +M +A +K V+LELGGKSPL+I D +++ A + G+R
Sbjct: 245 TGKKVMEMSA-KTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRV 303
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
+VQ +I F+++ V++ A VGDP + G + KVL ++ ++G ++
Sbjct: 304 FVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVL 363
Query: 481 AGGKRKG------DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 534
GG+ GYF+ P V N DD +EEIFGPV +++ F T +EV++RAN+
Sbjct: 364 CGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANN 423
Query: 535 TKYGLASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAAL 587
T +GLASG+ T +I A+ A + AG+ + PFGG+K SG GRE G+A +
Sbjct: 424 TTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGRENGQATV 483
Query: 588 DEYTELKTVT 597
D Y++LKTV
Sbjct: 484 DYYSQLKTVI 493
Score = 266 bits (682), Expect = 3e-82
Identities = 70/202 (34%), Positives = 105/202 (51%), Gaps = 20/202 (9%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
VQ I + L+EV++R G + G + KVL +
Sbjct: 305 VQREIMPQFLEEVVKRTKAIVVG-------------DPLLTETRMGGLISKPQLDKVLGF 351
Query: 228 IKSGVEQGGKLEAGGKRKG------DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKF 281
+ ++G ++ GG+ GYF+ P V N DD +EEIFGPV +++ F
Sbjct: 352 VAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPF 411
Query: 282 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKE 341
T +EV++RAN+T +GLASG+ T +I A+ A + AG+ +IN Y + PFGG+K
Sbjct: 412 DTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKM 471
Query: 342 SGIGRELGKAALDEYTELKTVT 363
SG GRE G+A +D Y++LKTV
Sbjct: 472 SGFGRENGQATVDYYSQLKTVI 493
Score = 250 bits (641), Expect = 2e-76
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R +VQ +I F+++ V++ A VGDP + G + KVL ++ ++G
Sbjct: 301 TRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGA 360
Query: 131 KLEAGGKRKG------DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIER 184
++ GG+ GYF+ P V N DD +EEIFGPV +++ F T +EV++R
Sbjct: 361 RVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQR 420
Query: 185 ANDTKYGLASGIVTTNIDTANTFAHAINAGSV 216
AN+T +GLASG+ T +I A+ A + AG+
Sbjct: 421 ANNTTFGLASGVFTRDISRAHRVAANLEAGTC 452
Score = 100 bits (251), Expect = 2e-22
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
+ AWK PALA G V+ KP+ TP+T + +A + +AG P G+++V+ G
Sbjct: 171 IAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGA 222
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 369 bits (949), Expect = e-121
Identities = 92/245 (37%), Positives = 135/245 (55%), Gaps = 19/245 (7%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFV----------CAGSRT 420
+ AA +KRV LELGGK P ++ ADAD+D A +GSR
Sbjct: 252 VGTKLGEIAA-RTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRL 310
Query: 421 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLE 480
VQE I D +++ ++ + GDP ++ + G + KV +Y+ +G+ G +L
Sbjct: 311 LVQEGIRDALMERLLDISRKVAFGDPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELL 370
Query: 481 AGGKRKG-DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGL 539
GG+R G + G + PTVF+ VT D IAREEIFGPV + + FKT DE + AN T++GL
Sbjct: 371 LGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADEAVALANATEFGL 430
Query: 540 ASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEYTE 592
++ + +TN++TA I AG P+ P GG+K+SG+GRELG+ DEY++
Sbjct: 431 SASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGRELGRYGFDEYSQ 490
Query: 593 LKTVT 597
K V
Sbjct: 491 FKGVH 495
Score = 267 bits (686), Expect = 1e-82
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 15/197 (7%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
VQ I+ ++ +++ + +G + G+ + KV +Y
Sbjct: 312 VQEGIRDALMERLLDISRKVAFG-------------DPLNERTKIGAMISEAHAEKVHSY 358
Query: 228 IKSGVEQGGKLEAGGKRKG-DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 286
+ +G+ G +L GG+R G + G + PTVF+ VT D IAREEIFGPV + + FKT DE
Sbjct: 359 VTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADE 418
Query: 287 VIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGR 346
+ AN T++GL++ + +TN++TA I AG WIN P+ P GG+K+SG+GR
Sbjct: 419 AVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGR 478
Query: 347 ELGKAALDEYTELKTVT 363
ELG+ DEY++ K V
Sbjct: 479 ELGRYGFDEYSQFKGVH 495
Score = 250 bits (640), Expect = 6e-76
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR VQE I D +++ ++ + GDP ++ + G + KV +Y+ +G+ G
Sbjct: 308 SRLLVQEGIRDALMERLLDISRKVAFGDPLNERTKIGAMISEAHAEKVHSYVTAGITSGA 367
Query: 131 KLEAGGKRKG-DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 189
+L GG+R G + G + PTVF+ VT D IAREEIFGPV + + FKT DE + AN T+
Sbjct: 368 ELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADEAVALANATE 427
Query: 190 YGLASGIVTTNIDTANTFAHAINAGSV 216
+GL++ + +TN++TA I AG
Sbjct: 428 FGLSASVWSTNLETALQTIRRIRAGRC 454
Score = 108 bits (272), Expect = 4e-25
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ + + A+ +GC V+LKP+E T T++ +A L ++AG PDGV +V+ GYG
Sbjct: 177 IASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPDGVFNVVTGYGD 229
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 361 bits (929), Expect = e-119
Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 23/247 (9%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVD-------MAYYY-----CFVCAGS 418
T I++ A S++KR +ELGGK+P+++ DAD++ YY C A
Sbjct: 249 TGEHIISHTA-SSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDC--TAAC 305
Query: 419 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGG- 477
R Y Q+ IYDT V+K A K G P D+S + GP +V ++ G
Sbjct: 306 RIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHI 365
Query: 478 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 537
K+ GG+++ GY+ PT+ + D I ++E+FGPV ++ F ++V+ AND++Y
Sbjct: 366 KVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQY 425
Query: 538 GLASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEY 590
GLAS + T ++ A+ + + G +V + P GG K SG G+++ L++Y
Sbjct: 426 GLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDY 485
Query: 591 TELKTVT 597
T ++ V
Sbjct: 486 TVVRHVM 492
Score = 259 bits (665), Expect = 6e-80
Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
Q I ++++ K G + G +V
Sbjct: 309 AQKGIYDTLVEKLGAAVATLKSG-------------APDDESTELGPLSSLAHLERVGKA 355
Query: 228 IKSGVEQGG-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 286
++ G K+ GG+++ GY+ PT+ + D I ++E+FGPV ++ F ++
Sbjct: 356 VEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQ 415
Query: 287 VIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGR 346
V+ AND++YGLAS + T ++ A+ + + G W+N + +V + P GG K SG G+
Sbjct: 416 VVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGK 475
Query: 347 ELGKAALDEYTELKTVT 363
++ L++YT ++ V
Sbjct: 476 DMSLYGLEDYTVVRHVM 492
Score = 243 bits (624), Expect = 6e-74
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R Y Q+ IYDT V+K A K G P D+S + GP +V ++ G
Sbjct: 305 CRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGH 364
Query: 131 -KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 189
K+ GG+++ GY+ PT+ + D I ++E+FGPV ++ F ++V+ AND++
Sbjct: 365 IKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQ 424
Query: 190 YGLASGIVTTNIDTANTFAHAINAGSV 216
YGLAS + T ++ A+ + + G
Sbjct: 425 YGLASSVWTKDVGRAHRVSARLQYGCT 451
Score = 98.0 bits (245), Expect = 8e-22
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M AWK PALAAG V+LKP+E TPLTAL +A L + FP GV+++L G G
Sbjct: 175 MAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVVNILFGRGK 226
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 360 bits (926), Expect = e-118
Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 23/247 (9%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMA-------YYY-----CFVCAGS 418
T ++AAAA +KR LELGGK+P+++ DAD++ YY C A
Sbjct: 251 TGKKVLAAAA-KTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDC--TAAC 307
Query: 419 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGG- 477
R Y + IY+ V + + D + GP + +V ++++ +Q
Sbjct: 308 RIYAEAGIYEKLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVERAADQKHI 367
Query: 478 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 537
++ GG+ D+G+F +PTV + T + +I R E+FGPV ++ +F D+ + AND+ Y
Sbjct: 368 EITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVAWANDSDY 427
Query: 538 GLASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELGKAALDEY 590
GLAS + T +I A A + G + + P GG K+SG G+++ AL++Y
Sbjct: 428 GLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYGKDMSVYALEDY 487
Query: 591 TELKTVT 597
T ++ +
Sbjct: 488 TAVRHIM 494
Score = 259 bits (664), Expect = 1e-79
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 15/197 (7%)
Query: 169 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS-VDAEMFTKVLNY 227
+ I K + ++ + +Y G + +V ++
Sbjct: 311 AEAGIYEKLVADLTSAVSTIRYN-------------LDDDTENEIGPLISRRQRDRVASF 357
Query: 228 IKSGVEQGG-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDE 286
++ +Q ++ GG+ D+G+F +PTV + T + +I R E+FGPV ++ +F D+
Sbjct: 358 VERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDD 417
Query: 287 VIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGR 346
+ AND+ YGLAS + T +I A A + G WIN + + + P GG K+SG G+
Sbjct: 418 AVAWANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYGK 477
Query: 347 ELGKAALDEYTELKTVT 363
++ AL++YT ++ +
Sbjct: 478 DMSVYALEDYTAVRHIM 494
Score = 243 bits (624), Expect = 6e-74
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R Y + IY+ V + + D + GP + +V ++++ +Q
Sbjct: 307 CRIYAEAGIYEKLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVERAADQKH 366
Query: 131 -KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK 189
++ GG+ D+G+F +PTV + T + +I R E+FGPV ++ +F D+ + AND+
Sbjct: 367 IEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVAWANDSD 426
Query: 190 YGLASGIVTTNIDTANTFAHAINAGSV 216
YGLAS + T +I A A + G
Sbjct: 427 YGLASSVWTKDISKAMRAASRLQYGCT 453
Score = 98.4 bits (246), Expect = 7e-22
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M+AWK PA+ G V+ KP+EQTPLTAL +A L P+GV++V+ G G
Sbjct: 177 MMAWKLAPAIGGGNTVVFKPSEQTPLTALKLARLIADI-LPEGVVNVITGRGE 228
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 353 bits (909), Expect = e-116
Identities = 101/254 (39%), Positives = 140/254 (55%), Gaps = 31/254 (12%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMA-------YYY-----CFVCAGS 418
T +M AA +LKR+S ELGGKSP ++ ADAD++ A + C A S
Sbjct: 253 TGKIVMRNAA-DHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERC--TASS 309
Query: 419 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGK 478
R V+E I++ FV K VE+A A +VG P D + GP + E +VL Y+++G +G +
Sbjct: 310 RLLVEEKIFEDFVGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKREGAR 369
Query: 479 LEAGGKRKG--------DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIE 530
L GG+R +G ++ PTVF + KIA+EEIFGPV I FK +E +
Sbjct: 370 LLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHMKIAQEEIFGPVLVAIPFKDEEEALR 428
Query: 531 RANDTKYGLASGIVTTNIDTANTFAHAINAGS-------AVVPQAPFGGFKESGIGRELG 583
+ANDTKYGLA+ + T +++ A+ A + AG PFGG K SG RE G
Sbjct: 429 KANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDRREGG 488
Query: 584 KAALDEYTELKTVT 597
ALD YT+LKT+
Sbjct: 489 TYALDFYTDLKTIA 502
Score = 251 bits (643), Expect = 2e-76
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG--------DKGYFIEPTVFSNVTDDFKIA 267
+ E +VL Y+++G +G +L GG+R +G ++ PTVF + KIA
Sbjct: 348 IHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHMKIA 406
Query: 268 REEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCY 327
+EEIFGPV I FK +E + +ANDTKYGLA+ + T +++ A+ A + AG V++N +
Sbjct: 407 QEEIFGPVLVAIPFKDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSH 466
Query: 328 QAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
PFGG K SG RE G ALD YT+LKT+
Sbjct: 467 NVRHLPTPFGGVKGSGDRREGGTYALDFYTDLKTIA 502
Score = 239 bits (611), Expect = 7e-72
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR V+E I++ FV K VE+A A +VG P D + GP + +VL Y+++G +G
Sbjct: 309 SRLLVEEKIFEDFVGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKREGA 368
Query: 131 KLEAGGKRKG--------DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVI 182
+L GG+R +G ++ PTVF + KIA+EEIFGPV I FK +E +
Sbjct: 369 RLLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHMKIAQEEIFGPVLVAIPFKDEEEAL 427
Query: 183 ERANDTKYGLASGIVTTNIDTANTFAHAINAGSV 216
+ANDTKYGLA+ + T +++ A+ A + AG V
Sbjct: 428 RKANDTKYGLAAYVFTRDLERAHRLALELEAGMV 461
Score = 105 bits (265), Expect = 3e-24
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ W+ PALA G V+LKPAE +P TA +A + ++A P GV +++ G+G
Sbjct: 178 LSTWRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFNLVQGFGE 230
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 338 bits (868), Expect = e-109
Identities = 84/255 (32%), Positives = 132/255 (51%), Gaps = 30/255 (11%)
Query: 371 TSHSIMAAAAA-----SNLKRVSLELGGKSPLVICADADVDMA--------YYY----CF 413
+ AA ++LKRV +E+GGK +V+ DAD+D+A + + C
Sbjct: 263 VGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKC- 321
Query: 414 VCAGSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGV 473
AGSR + +D+YD ++K V A VGDP ++ GP +D + F K+++YI+ G
Sbjct: 322 -SAGSRAVIHKDVYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGK 380
Query: 474 EQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 533
++G +L GG+ G+FI+PT+ +++ + I +EEIFGPV K D +E AN
Sbjct: 381 KEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIAN 439
Query: 534 DTKYGLASGIVTTNIDTANTFAHAINAGS---------AVVPQAPFGGFKESGIG-RELG 583
+T+YGL ++T N + G+ A+V PFGGFK SG + G
Sbjct: 440 NTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGG 499
Query: 584 KAALDEYTELKTVTE 598
L + + KTV+E
Sbjct: 500 PDYLALHMQAKTVSE 514
Score = 239 bits (611), Expect = 1e-71
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+D + F K+++YI+ G ++G +L GG+ G+FI+PT+ +++ + I +EEIFGPV
Sbjct: 364 IDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPV 422
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVPQ 333
K D +E AN+T+YGL ++T N + G+++ N C A+V
Sbjct: 423 VAFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGY 482
Query: 334 APFGGFKESGIG-RELGKAALDEYTELKTVTE--SPLRSYTSHS 374
PFGGFK SG + G L + + KTV+E + + SH
Sbjct: 483 HPFGGFKMSGTDSKAGGPDYLALHMQAKTVSEMYAENLYFQSHH 526
Score = 235 bits (603), Expect = 2e-70
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR + +D+YD ++K V A VGDP ++ GP +D F K+++YI+ G ++G
Sbjct: 325 SRAVIHKDVYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEG- 383
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
+L GG+ G+FI+PT+ +++ + I +EEIFGPV K D +E AN+T+Y
Sbjct: 384 RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIANNTEY 443
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL ++T N + G++
Sbjct: 444 GLTGAVITRNRAHIEQAKREFHVGNL 469
Score = 98.4 bits (246), Expect = 7e-22
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
++ + G V+LKPA TP+ A + + AG P GVI+ +PG G
Sbjct: 188 IMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGA 240
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 333 bits (856), Expect = e-108
Identities = 93/240 (38%), Positives = 136/240 (56%), Gaps = 19/240 (7%)
Query: 377 AAAAASNLKRVSLELGGKSPLVICADAD----VDMAYYYCFV------CAGSRTYVQEDI 426
AA + K+VSLELGGKSP ++ D D AG+R V I
Sbjct: 235 MEKAAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKI 294
Query: 427 YDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRK 486
D F+ + E+ + +VG+P + Q GP + + F +V NYI G+E+G +L GG K
Sbjct: 295 KDAFLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGK 354
Query: 487 G---DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
+KGYF PT+F NV + IA+EEIFGPV ++I + LDE I+ ANDTKYGLA +
Sbjct: 355 PEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDEAIQIANDTKYGLAGYV 414
Query: 544 VTTNIDTANTFAHAINAGSAVV------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
+ + +T + A +I AG+ + P PFGG+K+SG+GRE G ++E+ E+K++
Sbjct: 415 IGKDKETLHKVARSIEAGTVEINEAGRKPDLPFGGYKQSGLGREWGDYGIEEFLEVKSIA 474
Score = 238 bits (609), Expect = 6e-72
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 4/151 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG---DKGYFIEPTVFSNVTDDFKIAREEIF 272
+ + F +V NYI G+E+G +L GG K +KGYF PT+F NV + IA+EEIF
Sbjct: 325 ISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIF 384
Query: 273 GPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVP 332
GPV ++I + LDE I+ ANDTKYGLA ++ + +T + A +I AG+V IN P
Sbjct: 385 GPVMSVITYNDLDEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINEA-GRKP 443
Query: 333 QAPFGGFKESGIGRELGKAALDEYTELKTVT 363
PFGG+K+SG+GRE G ++E+ E+K++
Sbjct: 444 DLPFGGYKQSGLGREWGDYGIEEFLEVKSIA 474
Score = 223 bits (570), Expect = 3e-66
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 7/159 (4%)
Query: 62 SCLSPLAYRSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNY 121
C + +R V I D F+ + E+ + +VG+P + Q GP + F +V NY
Sbjct: 281 VCTAG----TRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNY 336
Query: 122 IKSGVEQGGKLEAGGKRKG---DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL 178
I G+E+G +L GG K +KGYF PT+F NV + IA+EEIFGPV ++I + L
Sbjct: 337 INKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDL 396
Query: 179 DEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVD 217
DE I+ ANDTKYGLA ++ + +T + A +I AG+V+
Sbjct: 397 DEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVE 435
Score = 95.7 bits (239), Expect = 5e-21
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ K A AAG PV+LKP+E+TP A+ +A + + G P GV +++ G G
Sbjct: 155 QTSLKLAAAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGDGA 207
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 331 bits (850), Expect = e-107
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 377 AAAAASNLKRVSLELGGKSPLVICADAD---VDMAYYYCFV------CAGSRTYVQEDIY 427
+ A++ LKRV LELGGK +I ADAD + +CF A +R V++ IY
Sbjct: 257 SKNASNTLKRVCLELGGKGANIIFADADIDALQRGVRHCFYNSGQSCNAPTRMLVEQAIY 316
Query: 428 DTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG 487
D +K A + A +VG GP V E + K+ + I+SG+++G L GG
Sbjct: 317 DKAIKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLP 376
Query: 488 ---DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
++GY++ PTVF++V +I REEIFGPV +++ F T DE + ANDT+YGL + I
Sbjct: 377 MGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTEDEAVTLANDTEYGLTNYIQ 436
Query: 545 TTNIDTANTFAHAINAGSAVV------PQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
+ + A + +G V + FGG K SG RE G + E+ + K ++
Sbjct: 437 SQDRSKCRRIAAQVRSGMVEVNGHELPGGSYFGGVKFSGRAREGGLWGIKEFLDTKAIS 495
Score = 237 bits (606), Expect = 2e-71
Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG---DKGYFIEPTVFSNVTDDFKIAREEIF 272
V E + K+ + I+SG+++G L GG ++GY++ PTVF++V +I REEIF
Sbjct: 346 VSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIF 405
Query: 273 GPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVP 332
GPV +++ F T DE + ANDT+YGL + I + + A + +G V +N + +
Sbjct: 406 GPVLSLLPFNTEDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNGH-ELPG 464
Query: 333 QAPFGGFKESGIGRELGKAALDEYTELKTVT 363
+ FGG K SG RE G + E+ + K ++
Sbjct: 465 GSYFGGVKFSGRAREGGLWGIKEFLDTKAIS 495
Score = 221 bits (565), Expect = 2e-65
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 62 SCLSPLAYRSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNY 121
SC +P +R V++ IYD +K A + A +VG GP V + K+ +
Sbjct: 302 SCNAP----TRMLVEQAIYDKAIKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDL 357
Query: 122 IKSGVEQGGKLEAGGKRKG---DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTL 178
I+SG+++G L GG ++GY++ PTVF++V +I REEIFGPV +++ F T
Sbjct: 358 IQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTE 417
Query: 179 DEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVD 217
DE + ANDT+YGL + I + + A + +G V+
Sbjct: 418 DEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVE 456
Score = 95.7 bits (239), Expect = 5e-21
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ K PAL AGC ++LKP+E PL+A+ A + +A P GV +++ G G
Sbjct: 177 QVTLKVIPALLAGCTMVLKPSEIAPLSAMLFAEILDEAALPSGVFNLINGDGA 229
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 329 bits (846), Expect = e-107
Identities = 89/239 (37%), Positives = 123/239 (51%), Gaps = 18/239 (7%)
Query: 377 AAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCF-----VC-AGSRTYVQEDI 426
AA LK +LELGGKS +I D D+ A + C +R
Sbjct: 241 GRRAAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSR 300
Query: 427 YDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRK 486
YD V A VG P D + Q GP + + T+V YI G+E+G +L GG R
Sbjct: 301 YDEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRP 360
Query: 487 G--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
D G+FI+PTVF++V + IA+EEIFGPV II + T ++ I AND+ YGLA +
Sbjct: 361 EGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEEDAIAIANDSVYGLAGSVW 420
Query: 545 TTNIDTANTFAHAINAGS------AVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 597
TT++ + I G+ A P +PFGG+K SGIGRE G ++ +T+ K+V
Sbjct: 421 TTDVPKGIKISQQIRTGTYGINWYAFDPGSPFGGYKNSGIGRENGPEGVEHFTQQKSVL 479
Score = 237 bits (606), Expect = 3e-71
Identities = 66/164 (40%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFG 273
+ + T+V YI G+E+G +L GG R D G+FI+PTVF++V + IA+EEIFG
Sbjct: 331 ISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFG 390
Query: 274 PVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQ 333
PV II + T ++ I AND+ YGLA + TT++ + I G+ IN Y A P
Sbjct: 391 PVLAIIPYDTEEDAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWY-AFDPG 449
Query: 334 APFGGFKESGIGRELGKAALDEYTELKTVT----ESPLRSYTSH 373
+PFGG+K SGIGRE G ++ +T+ K+V + S+ H
Sbjct: 450 SPFGGYKNSGIGRENGPEGVEHFTQQKSVLLPMGYTVAGSHHHH 493
Score = 218 bits (559), Expect = 1e-64
Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 62 SCLSPLAYRSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNY 121
C++ +R YD V A VG P D + Q GP + T+V Y
Sbjct: 287 GCVNQ----TRILAPRSRYDEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGY 342
Query: 122 IKSGVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 179
I G+E+G +L GG R D G+FI+PTVF++V + IA+EEIFGPV II + T +
Sbjct: 343 IAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEE 402
Query: 180 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSV 216
+ I AND+ YGLA + TT++ + I G+
Sbjct: 403 DAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTY 439
Score = 91.4 bits (228), Expect = 1e-19
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
+ K PAL AGC ++LKPA +TPLTA +A + + G P+GV+SV+PG
Sbjct: 162 LAVNKIAPALLAGCTIVLKPAAETPLTANALAEVFAEVGLPEGVLSVVPG 211
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 314 bits (807), Expect = e-100
Identities = 87/255 (34%), Positives = 128/255 (50%), Gaps = 31/255 (12%)
Query: 371 TSHSIMAAAA-----ASNLKRVSLELGGKSPLVICADADVDMA--------YYY----CF 413
I AA + KR +E GGK+ +++ AD D+A Y + C
Sbjct: 264 VGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKC- 322
Query: 414 VCAGSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGV 473
A SR + + Y+ +++ +++A VG P +++ GP V AE KVL+YI+ G
Sbjct: 323 -SAASRLILTQGAYEPVLERVLKRAERLSVG-PAEENPDLGPVVSAEQERKVLSYIEIGK 380
Query: 474 EQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 533
+G +L GGKR +GYFI PTVF+ V +IA+EEIFGPV ++I+ K E +E AN
Sbjct: 381 NEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVAN 439
Query: 534 DTKYGLASGIVTTNIDTANTFAHAINAGS---------AVVPQAPFGGFKESGIGRELGK 584
DT YGL G+ + + + G+ A+V PFGGFK SG + G
Sbjct: 440 DTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGA 499
Query: 585 -AALDEYTELKTVTE 598
L + E+K V E
Sbjct: 500 LDYLRLFLEMKAVAE 514
Score = 228 bits (583), Expect = 8e-68
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
V AE KVL+YI+ G +G +L GGKR +GYFI PTVF+ V +IA+EEIFGPV
Sbjct: 364 VSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPV 422
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVPQ 333
++I+ K E +E ANDT YGL G+ + + + G+++ N A+V
Sbjct: 423 LSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGV 482
Query: 334 APFGGFKESGIGRELGK-AALDEYTELKTVTE 364
PFGGFK SG + G L + E+K V E
Sbjct: 483 QPFGGFKLSGTNAKTGALDYLRLFLEMKAVAE 514
Score = 217 bits (555), Expect = 1e-63
Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR + + Y+ +++ +++A VG P +++ GP V A KVL+YI+ G +G
Sbjct: 326 SRLILTQGAYEPVLERVLKRAERLSVG-PAEENPDLGPVVSAEQERKVLSYIEIGKNEG- 383
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
+L GGKR +GYFI PTVF+ V +IA+EEIFGPV ++I+ K E +E ANDT Y
Sbjct: 384 QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPY 443
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL G+ + + + G++
Sbjct: 444 GLTGGVYSRKREHLEWARREFHVGNL 469
Score = 98.8 bits (247), Expect = 5e-22
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ +A G V+ KPAE + V + +AGFP GV++ LPG G
Sbjct: 189 IFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGE 241
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 306 bits (785), Expect = 2e-97
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 26/244 (10%)
Query: 375 IM-AAAAASNLKRVSLELGGKSPLVICADADVDMA--------YYY----CFVCAGSRTY 421
+ A +K V+LELGG +P V+ ADAD+D A + + C + +R
Sbjct: 244 VGELAINGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQIC--MSINRVI 301
Query: 422 VQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEA 481
V ++D F++K VE GDP + GP ++ + + I+ ++G ++
Sbjct: 302 VDAAVHDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQV 361
Query: 482 GGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLAS 541
G +G + P VFS+VT D +IAREEIFGP+ +++K E AN + +GL++
Sbjct: 362 EGPIEG---RLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAELANASDFGLSA 418
Query: 542 GIVTTNIDTANTFAHAINAGSAVV--------PQAPFGGFKESGIGRELGKAALDEYTEL 593
+ + +ID A FA I++G + P FGG K SG+GR G A++E+T
Sbjct: 419 AVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGRFNGDWAIEEFTTD 478
Query: 594 KTVT 597
+ +
Sbjct: 479 RWIG 482
Score = 214 bits (547), Expect = 1e-62
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
++ + + I+ ++G ++ G +G + P VFS+VT D +IAREEIFGP+
Sbjct: 337 INDSQLSGLKEKIELAKKEGATVQVEGPIEG---RLVHPHVFSDVTSDMEIAREEIFGPL 393
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQ-AVVPQA 334
+++K E AN + +GL++ + + +ID A FA I++G V IN P
Sbjct: 394 ISVLKADDEAHAAELANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHV 453
Query: 335 PFGGFKESGIGRELGKAALDEYTELKTVT 363
FGG K SG+GR G A++E+T + +
Sbjct: 454 MFGGSKNSGLGRFNGDWAIEEFTTDRWIG 482
Score = 206 bits (526), Expect = 1e-59
Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+R V ++D F++K VE GDP + GP ++ + + I+ ++G
Sbjct: 298 NRVIVDAAVHDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGA 357
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
++ G +G + P VFS+VT D +IAREEIFGP+ +++K E AN + +
Sbjct: 358 TVQVEGPIEG---RLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAELANASDF 414
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL++ + + +ID A FA I++G V
Sbjct: 415 GLSAAVWSKDIDRAAQFALQIDSGMV 440
Score = 92.3 bits (230), Expect = 6e-20
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAA-LTQQAGFPDGVISVLPGYGP 53
+ PALA G V++KPA TP+T + A + ++AG P GVIS + G G
Sbjct: 164 LSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVAGAGS 217
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 285 bits (733), Expect = 8e-90
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 30/246 (12%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA--------YYY----CFVCAGSRTYV 422
++ +K+ +ELGG P ++ DAD+D+A Y Y C A
Sbjct: 251 VVKVGG---VKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRC--DAIKLVLA 305
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
+ +Y V++ ++ ++ +VGDP D +V GP + +++ I+ VE+GG++ AG
Sbjct: 306 ERPVYGKLVEEVAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAG 365
Query: 483 GKRKGDKGYFIEPTVF---SNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGL 539
G+R G +++PT ++ D + + E+F PV ++ K LD+ IE AN YGL
Sbjct: 366 GRRLG--PTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGL 423
Query: 540 ASGIVTTNIDTANTFAHA-------INAGSAV-VPQAPFGGFKESGIGRELGKAALDEYT 591
+ + ++ IN + PFGG K+SG+ RE A++ T
Sbjct: 424 DAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVEAVT 483
Query: 592 ELKTVT 597
KT+
Sbjct: 484 AYKTIV 489
Score = 200 bits (510), Expect = 2e-57
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVF---SNVTDDFKIAREEIF 272
+ +++ I+ VE+GG++ AGG+R G +++PT ++ D + + E+F
Sbjct: 340 ISPSAVDEMMAAIEDAVEKGGRVLAGGRRLG--PTYVQPTFVEAPADRVKDMVLYKREVF 397
Query: 273 GPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV-V 331
PV ++ K LD+ IE AN YGL + + ++ + G+++IN +
Sbjct: 398 APVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGI 457
Query: 332 PQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
PFGG K+SG+ RE A++ T KT+
Sbjct: 458 GYYPFGGRKKSGVFREGIGYAVEAVTAYKTIV 489
Score = 192 bits (489), Expect = 2e-54
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+ +Y V++ ++ ++ +VGDP D +V GP + +++ I+ VE+GG
Sbjct: 301 KLVLAERPVYGKLVEEVAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGG 360
Query: 131 KLEAGGKRKGDKGYFIEPTVF---SNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 187
++ AGG+R G +++PT ++ D + + E+F PV ++ K LD+ IE AN
Sbjct: 361 RVLAGGRRLG--PTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIELANG 418
Query: 188 TKYGLASGIVTTNIDTANTFAHAINAGSV 216
YGL + + ++ + G++
Sbjct: 419 RPYGLDAAVFGRDVVKIRRAVRLLEVGAI 447
Score = 99.6 bits (249), Expect = 3e-22
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAP 57
K + G V++KP+ PL A AGFP I++L G +
Sbjct: 173 DAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIALLNLPGKEAEK 229
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 279 bits (716), Expect = 2e-87
Identities = 73/242 (30%), Positives = 105/242 (43%), Gaps = 29/242 (11%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA--------YYY----CFVCAGSRTYV 422
I A + V LELGGK P ++ DAD+ + + Y C R +V
Sbjct: 247 ISEKA---KMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRC-TAI-KRVFV 301
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
Q+ + D V E VG P D P +D + + I +E G L +G
Sbjct: 302 QDSVADQLVANIKELVEQLTVGSPED-DADITPVIDEKSAAFIQGLIDDALENGATLLSG 360
Query: 483 GKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
KR+G + PT+ +VT ++A EE FGPV II+ K +E I +N + YGL +
Sbjct: 361 NKRQG---NLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQSDYGLQAS 417
Query: 543 IVTTNIDTANTFAHA-------INAGSAVVP-QAPFGGFKESGIGRELGKAALDEYTELK 594
I T + D A INA + P PF G K+SG+G + K +L T +
Sbjct: 418 IFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLGVQGIKPSLLSMTRER 477
Query: 595 TV 596
Sbjct: 478 VT 479
Score = 200 bits (511), Expect = 2e-57
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+D + + I +E G L +G KR+G + PT+ +VT ++A EE FGPV
Sbjct: 335 IDEKSAAFIQGLIDDALENGATLLSGNKRQG---NLLSPTLLDDVTPAMRVAWEEPFGPV 391
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVP-QA 334
II+ K +E I +N + YGL + I T + D A + G+V IN P
Sbjct: 392 LPIIRVKDANEAISLSNQSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHF 451
Query: 335 PFGGFKESGIGRELGKAALDEYTELKTV 362
PF G K+SG+G + K +L T +
Sbjct: 452 PFLGVKKSGLGVQGIKPSLLSMTRERVT 479
Score = 190 bits (485), Expect = 9e-54
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R +VQ+ + D V E VG P D P +D + I +E G
Sbjct: 297 KRVFVQDSVADQLVANIKELVEQLTVGSPED-DADITPVIDEKSAAFIQGLIDDALENGA 355
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
L +G KR+G + PT+ +VT ++A EE FGPV II+ K +E I +N + Y
Sbjct: 356 TLLSGNKRQG---NLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQSDY 412
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL + I T + D A + G+V
Sbjct: 413 GLQASIFTKDTDRAINIGKHLEVGTV 438
Score = 96.1 bits (240), Expect = 3e-21
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ A K PAL G V+ KPA Q L+ + + AG P+G+I V+ G G
Sbjct: 168 LAAAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPEGIIQVVTGRGS 220
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 277 bits (710), Expect = 1e-86
Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 26/241 (10%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGSRTYVQE 424
I A K+++LELGG +P ++ DAD++ A VC + V E
Sbjct: 229 ITKKAG---FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDE 285
Query: 425 DIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I D F++ V KA VG+P D+ GP + E V ++ +++GGKL GGK
Sbjct: 286 SIADKFIEMFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGK 345
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
R PT+ V D + + E F PV II+ +E+I+ AN T+YGL S I
Sbjct: 346 R---DKALFYPTIL-EVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTEYGLHSAIF 400
Query: 545 TTNIDTANTFAHAINAGSAVV--------PQAPFGGFKESGIGRELGKAALDEYTELKTV 596
T +I+ + FA + G V+ PFGG K+SG+GRE K A++E + +KT+
Sbjct: 401 TNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTI 460
Query: 597 T 597
Sbjct: 461 I 461
Score = 193 bits (492), Expect = 5e-55
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+ E V ++ +++GGKL GGKR PT+ V D + + E F PV
Sbjct: 318 ISVEHAEWVEKVVEKAIDEGGKLLLGGKRDK---ALFYPTIL-EVDRDNILCKTETFAPV 373
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV-VPQA 334
II+ +E+I+ AN T+YGL S I T +I+ + FA + G V IN
Sbjct: 374 IPIIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNM 432
Query: 335 PFGGFKESGIGRELGKAALDEYTELKTVT 363
PFGG K+SG+GRE K A++E + +KT+
Sbjct: 433 PFGGVKKSGLGREGVKYAMEEMSNIKTII 461
Score = 184 bits (470), Expect = 6e-52
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
V E I D F++ V KA VG+P D+ GP + V ++ +++GG
Sbjct: 279 GMILVDESIADKFIEMFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGG 338
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KL GGKR PT+ V D + + E F PV II+ +E+I+ AN T+Y
Sbjct: 339 KLLLGGKR---DKALFYPTIL-EVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTEY 393
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL S I T +I+ + FA + G V
Sbjct: 394 GLHSAIFTNDINKSLKFAENLEFGGV 419
Score = 92.2 bits (230), Expect = 6e-20
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQA----GFPDGVISVLPGYGP 53
+ A K PA+A G ++ P+ + PL + +A + + A P GV ++L G G
Sbjct: 146 LSAHKIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGE 202
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 268 bits (687), Expect = 3e-83
Identities = 59/250 (23%), Positives = 99/250 (39%), Gaps = 21/250 (8%)
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGSRT 420
T + + + K ++LE+GG +PLV+ AD+D A Y C R
Sbjct: 229 TGNLLHSQFGGQPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRL 288
Query: 421 YVQEDIY-DTFVKKAVEKAAARKVGDPF-DKSVQQGPQVDAEMFTKVLNYIKSGVEQGGK 478
V + + D + + V +A +VG + G + +L + + +G +
Sbjct: 289 LVPQGAWGDALLARLVAVSATLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQ 348
Query: 479 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 538
+ D + P + +V+ + EE FGP+ +I++ I AN T+YG
Sbjct: 349 PLLAMTQPIDGAALLTPGIL-DVSAVAERPDEEFFGPLLQVIRYSDFAAAIREANATQYG 407
Query: 539 LASGIVTTNIDTANTFAHAINAG--------SAVVPQAPFGGFKESGIGRELGKAALDEY 590
LA+G+++ + + F AG + APFGG SG R A D
Sbjct: 408 LAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGNHRPSAYYAADYC 467
Query: 591 TELKTVTESP 600
ESP
Sbjct: 468 AYPVASLESP 477
Score = 192 bits (490), Expect = 1e-54
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+ +L + + +G + + D + P + +V+ + EE FGP+
Sbjct: 327 ISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGIL-DVSAVAERPDEEFFGPL 385
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVV-PQA 334
+I++ I AN T+YGLA+G+++ + + F AG V N A
Sbjct: 386 LQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSA 445
Query: 335 PFGGFKESGIGRELGKAALDEYTELKTVTESP 366
PFGG SG R A D ESP
Sbjct: 446 PFGGIGASGNHRPSAYYAADYCAYPVASLESP 477
Score = 178 bits (454), Expect = 1e-49
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 71 SRTYVQEDIY-DTFVKKAVEKAAARKVGDPF-DKSVQQGPQVDAVMFTKVLNYIKSGVEQ 128
R V + + D + + V +A +VG + G + +L + + +
Sbjct: 286 RRLLVPQGAWGDALLARLVAVSATLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGK 345
Query: 129 GGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDT 188
G + + D + P + +V+ + EE FGP+ +I++ I AN T
Sbjct: 346 GAQPLLAMTQPIDGAALLTPGIL-DVSAVAERPDEEFFGPLLQVIRYSDFAAAIREANAT 404
Query: 189 KYGLASGIVTTNIDTANTFAHAINAGSV 216
+YGLA+G+++ + + F AG V
Sbjct: 405 QYGLAAGLLSDSRERFEQFLVESRAGIV 432
Score = 91.1 bits (227), Expect = 1e-19
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
+ PAL AG V+ KP+E TP A QAG P GV++++ G
Sbjct: 155 LPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQG 204
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 268 bits (687), Expect = 9e-83
Identities = 50/280 (17%), Positives = 96/280 (34%), Gaps = 50/280 (17%)
Query: 371 TSHSIMAAAAAS-NLKRVSLELGGKSPLVICADADVDMAYYYCFV--------------- 414
T+ ++ A A R++++ + ++CADA D + F+
Sbjct: 240 TAATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKC 299
Query: 415 CAGSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVE 474
A R +V E + ++ K A VG+P + +V+ G V E + VL I + E
Sbjct: 300 TAIRRAFVPEAALEPVLEALKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALRE 359
Query: 475 QGGKLEAGGKRK-----GDKGYFIEPTVF--SNVTDDFKIAREEIFGPVQTIIKFKTLD- 526
+ + + P +F ++ + + E+FGPV ++ ++
Sbjct: 360 EAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHDVEVFGPVASVAPYRVTTD 419
Query: 527 -------EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGS----------------- 562
+ A + L + I + + A +
Sbjct: 420 TNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTGH 479
Query: 563 -AVVPQAPFGGFKESGIGREL-GKAALDEYTELKTVTESP 600
V+P + GG +G G EL G AL Y + +
Sbjct: 480 GNVMPMSLHGGPGRAGGGEELGGLRALAFYHRRSAIQAAS 519
Score = 187 bits (476), Expect = 2e-52
Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 27/178 (15%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRK-----GDKGYFIEPTVF--SNVTDDFKIAR 268
V E + VL I + E+ + + P +F ++ + +
Sbjct: 342 VSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHD 401
Query: 269 EEIFGPVQTIIKFKTLD--------EVIERANDTKYGLASGIVTTNIDTANTFAHAINAG 320
E+FGPV ++ ++ + A + L + I + + A +
Sbjct: 402 VEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADS 461
Query: 321 SVWINCYQA-----------VVPQAPFGGFKESGIGREL-GKAALDEYTELKTVTESP 366
++ V+P + GG +G G EL G AL Y + +
Sbjct: 462 HGRVHAISPSVQHSQTGHGNVMPMSLHGGPGRAGGGEELGGLRALAFYHRRSAIQAAS 519
Score = 176 bits (449), Expect = 1e-48
Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 15/161 (9%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R +V E + ++ K A VG+P + +V+ G V + VL I + E+
Sbjct: 303 RRAFVPEAALEPVLEALKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAV 362
Query: 131 KLEAGGKRK-----GDKGYFIEPTVF--SNVTDDFKIAREEIFGPVQTIIKFKTLD---- 179
+ + P +F ++ + + E+FGPV ++ ++
Sbjct: 363 LAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHDVEVFGPVASVAPYRVTTDTNA 422
Query: 180 ----EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSV 216
+ A + L + I + + A +
Sbjct: 423 LPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHG 463
Score = 86.2 bits (214), Expect = 5e-18
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAG-FPDGVISVLPGYG 52
L K PAL +G PV++KPA T + A AG P G +S++ G
Sbjct: 167 GLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICGSS 219
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 263 bits (675), Expect = 1e-81
Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 29/243 (11%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA--------YYY----CFVCAGSRTYV 422
I A ++ + LELGGK ++ DAD+++ + Y C R V
Sbjct: 238 IGKMAG---MRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRC-TAV-KRVLV 292
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
E + D V+K EK A +G+P D P +D + V I ++G
Sbjct: 293 MESVADELVEKIREKVLALTIGNPED-DADITPLIDTKSADYVEGLINDANDKGATALTE 351
Query: 483 GKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
KR+G I P +F VT D ++A EE FGPV II+ +++E IE +N ++YGL +
Sbjct: 352 IKREG---NLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQAS 408
Query: 543 IVTTNIDTANTFAHA-------INAGSAV-VPQAPFGGFKESGIGRELGKAALDEYTELK 594
I T + A A IN + PF G K+SG G + K +++ T +K
Sbjct: 409 IFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVK 468
Query: 595 TVT 597
+V
Sbjct: 469 SVV 471
Score = 186 bits (475), Expect = 1e-52
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 270
I+ S D V I ++G KR+G I P +F VT D ++A EE
Sbjct: 326 IDTKSAD-----YVEGLINDANDKGATALTEIKREG---NLICPILFDKVTTDMRLAWEE 377
Query: 271 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV 330
FGPV II+ +++E IE +N ++YGL + I T + A A + G+V IN
Sbjct: 378 PFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQR 437
Query: 331 -VPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
PF G K+SG G + K +++ T +K+V
Sbjct: 438 GTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVV 471
Score = 177 bits (452), Expect = 2e-49
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R V E + D V+K EK A +G+P D P +D V I ++G
Sbjct: 288 KRVLVMESVADELVEKIREKVLALTIGNPED-DADITPLIDTKSADYVEGLINDANDKGA 346
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
KR+G I P +F VT D ++A EE FGPV II+ +++E IE +N ++Y
Sbjct: 347 TALTEIKREG---NLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEY 403
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL + I T + A A + G+V
Sbjct: 404 GLQASIFTNDFPRAFGIAEQLEVGTV 429
Score = 91.1 bits (227), Expect = 1e-19
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ K PAL AG + KP Q ++ L +A +AG P GV + + G G
Sbjct: 159 LAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGS 211
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 264 bits (677), Expect = 1e-81
Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 20/243 (8%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFVCA----------GSRTYVQE 424
+ R LELGG + ++ DAD+ + A R ++ E
Sbjct: 254 QVGLMVQERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHE 313
Query: 425 DIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGK 484
I+D V + + A +VG+P+D +V GP + + L ++ ++GG + GGK
Sbjct: 314 SIHDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGK 373
Query: 485 RKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
G ++EPT+ + + D IA E F P+ + KF+ +EV N+ K GL+S I
Sbjct: 374 VMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQGLSSSIF 433
Query: 545 TTNIDTANTFAHA---------INAG-SAVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
T ++ + +N S FGG K +G GRE G A +Y
Sbjct: 434 TKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAWKQYMRRS 493
Query: 595 TVT 597
T T
Sbjct: 494 TCT 496
Score = 181 bits (461), Expect = 2e-50
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R ++ E I+D V + + A +VG+P+D +V GP + L ++ ++GG
Sbjct: 307 RRLFIHESIHDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGG 366
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
+ GGK G ++EPT+ + + D IA E F P+ + KF+ +EV N+ K
Sbjct: 367 TVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQ 426
Query: 191 GLASGIVTTNIDTANTFAHA---------INAGSVDAEM 220
GL+S I T ++ + +N + AE+
Sbjct: 427 GLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEI 465
Score = 180 bits (458), Expect = 4e-50
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+ + L ++ ++GG + GGK G ++EPT+ + + D IA E F P+
Sbjct: 346 HTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPI 405
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTF--AHAINAGSVWINCYQAVV-P 332
+ KF+ +EV N+ K GL+S I T ++ + + G V +N +
Sbjct: 406 LYVFKFQNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEI 465
Query: 333 QAPFGGFKESGIGRELGKAALDEYTELKTVT 363
FGG K +G GRE G A +Y T T
Sbjct: 466 GGAFGGEKHTGGGRESGSDAWKQYMRRSTCT 496
Score = 75.3 bits (186), Expect = 1e-14
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQA----GFPDGVISVLPG 50
+ W A+ G L K A T L ++ V + + P + S+ G
Sbjct: 173 VYGWNNAIAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCG 226
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 262 bits (673), Expect = 3e-81
Identities = 83/242 (34%), Positives = 123/242 (50%), Gaps = 22/242 (9%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD------MAYYY------CFVCAGSRTYV 422
+ A AA N+ +V LELGGK+P ++ DAD++ + C CA R YV
Sbjct: 236 KIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVC-NCA-ERVYV 293
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDK-SVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEA 481
Q+ IYD FV + E A + G+P ++ + GP ++A +V + VE+G ++
Sbjct: 294 QKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAF 353
Query: 482 GGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLAS 541
GGK KGY+ PT+ +V + I EE FGPV ++ F TL++ I AND+ YGL S
Sbjct: 354 GGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTS 413
Query: 542 GIVTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
I T N++ A IN + Q G+++SGIG GK L EY + +
Sbjct: 414 SIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEYLQTQ 473
Query: 595 TV 596
V
Sbjct: 474 VV 475
Score = 182 bits (465), Expect = 3e-51
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 270
INA +++ +V + VE+G ++ GGK KGY+ PT+ +V + I EE
Sbjct: 329 INAAALE-----RVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEE 383
Query: 271 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV 330
FGPV ++ F TL++ I AND+ YGL S I T N++ A + G +IN
Sbjct: 384 TFGPVLPVVAFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFE 443
Query: 331 VPQAPFGGFKESGIGRELGKAALDEYTELKTV 362
Q G+++SGIG GK L EY + + V
Sbjct: 444 AMQGFHAGWRKSGIGGADGKHGLHEYLQTQVV 475
Score = 175 bits (445), Expect = 2e-48
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDK-SVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
R YVQ+ IYD FV + E A + G+P ++ + GP ++A +V + VE+G
Sbjct: 290 RVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGA 349
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
++ GGK KGY+ PT+ +V + I EE FGPV ++ F TL++ I AND+ Y
Sbjct: 350 RVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDY 409
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GL S I T N++ A + G
Sbjct: 410 GLTSSIYTQNLNVAMKAIKGLKFGET 435
Score = 91.1 bits (227), Expect = 1e-19
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
++A K PAL G +++KP+E TP A+ A + + G P GV +++ G G
Sbjct: 158 LIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGE 210
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 257 bits (658), Expect = 5e-79
Identities = 80/251 (31%), Positives = 121/251 (48%), Gaps = 26/251 (10%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA--------YYY----CFVCAGSRTYV 422
+ A KR++LELGG +P + +DADVD A + + C + +R V
Sbjct: 238 HIGEIAGRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQIC-MII-NRIIV 295
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
+D+YD FV+K + GD D GP ++ K L I+ G +L
Sbjct: 296 HQDVYDEFVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVE 355
Query: 483 GKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
GKR G + P VF ++ KIA+ E+F P+ TIIK + E I+ ANDT+YGL+S
Sbjct: 356 GKRVG---NVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSA 412
Query: 543 IVTTNIDTANTFAHA-------INAGS-AVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
+ T++++ FA +N S P FGG K SG+GR ++E+T K
Sbjct: 413 VFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGRFGNPWVVEEFTVTK 472
Query: 595 TVT-ESPLRSY 604
++ + R Y
Sbjct: 473 WISIQKQYRKY 483
Score = 173 bits (440), Expect = 9e-48
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 12/163 (7%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 270
IN ++ K L I+ G +L GKR G + P VF ++ KIA+ E
Sbjct: 330 INERQIE-----KALEIIEQAKTDGIELAVEGKRVG---NVLTPYVFVGADNNSKIAQTE 381
Query: 271 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV 330
+F P+ TIIK + E I+ ANDT+YGL+S + T++++ FA I++G +N Q+V
Sbjct: 382 LFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVND-QSV 440
Query: 331 --VPQAPFGGFKESGIGRELGKAALDEYTELKTVT-ESPLRSY 370
P FGG K SG+GR ++E+T K ++ + R Y
Sbjct: 441 NDSPNIAFGGNKASGVGRFGNPWVVEEFTVTKWISIQKQYRKY 483
Score = 168 bits (429), Expect = 3e-46
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R V +D+YD FV+K + GD D GP ++ K L I+ G +
Sbjct: 292 RIIVHQDVYDEFVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGIE 351
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
L GKR G + P VF ++ KIA+ E+F P+ TIIK + E I+ ANDT+YG
Sbjct: 352 LAVEGKRVG---NVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYG 408
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
L+S + T++++ FA I++G
Sbjct: 409 LSSAVFTSDLEKGEKFALQIDSGMT 433
Score = 78.8 bits (195), Expect = 1e-15
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTA-LYVAALTQQAGFPDGVISVLPGYGP 53
+ PA+A G V+ KP QT ++ +A + AG P GV++V+
Sbjct: 159 LSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPAGVLNVMLTDVK 212
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 244 bits (626), Expect = 1e-74
Identities = 78/240 (32%), Positives = 120/240 (50%), Gaps = 17/240 (7%)
Query: 374 SIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGSRTYVQ 423
+ + A A + LK+ LELGG P ++ DAD+++A VC A R V+
Sbjct: 218 AAIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVE 277
Query: 424 EDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG 483
E I F + V AAA K+GDP + GP ++ ++ +++ V +G +L GG
Sbjct: 278 EGIAQAFTDRFVAAAAALKMGDPLVEENDLGPMARFDLRDELHQQVQASVAEGARLLLGG 337
Query: 484 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
++ +G + TV ++VT D R+E+FGPV I K + AND+++GL++ I
Sbjct: 338 EKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALANDSEFGLSATI 397
Query: 544 VTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKTV 596
T + A A IN SA + FGG K+SG GREL L E+ ++TV
Sbjct: 398 FTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFGRELSHFGLHEFCNVQTV 457
Score = 170 bits (434), Expect = 5e-47
Identities = 48/140 (34%), Positives = 77/140 (55%)
Query: 223 KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK 282
++ +++ V +G +L GG++ +G + TV ++VT D R+E+FGPV I K
Sbjct: 318 ELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAK 377
Query: 283 TLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKES 342
+ AND+++GL++ I T + A A + G V+IN Y A + FGG K+S
Sbjct: 378 DAAHALALANDSEFGLSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKS 437
Query: 343 GIGRELGKAALDEYTELKTV 362
G GREL L E+ ++TV
Sbjct: 438 GFGRELSHFGLHEFCNVQTV 457
Score = 163 bits (416), Expect = 1e-44
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R V+E I F + V AAA K+GDP + GP + ++ +++ V +G +
Sbjct: 273 RFIVEEGIAQAFTDRFVAAAAALKMGDPLVEENDLGPMARFDLRDELHQQVQASVAEGAR 332
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
L GG++ +G + TV ++VT D R+E+FGPV I K + AND+++G
Sbjct: 333 LLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALANDSEFG 392
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
L++ I T + A A + G V
Sbjct: 393 LSATIFTADDTLAAEMAARLECGGV 417
Score = 72.9 bits (180), Expect = 8e-14
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
+ P L AG LLK A A +A + +AG P GV +
Sbjct: 142 QVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNA 191
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 245 bits (627), Expect = 2e-74
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%)
Query: 374 SIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGSRTYVQ 423
S +A AA NLK+ ++ELGG ++ DAD + VC + R V+
Sbjct: 215 SAVAEAAGKNLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVE 274
Query: 424 EDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG 483
+ YD + + + K GDP + P + K+ +K ++ G K+
Sbjct: 275 KSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQY 334
Query: 484 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
KG F PT+ +++ D + +E+FGP+ + + + I+ AND+ YGL S +
Sbjct: 335 PEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSV 394
Query: 544 VTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKTV 596
+ ++ID A + IN + PFGG K+SG GREL L + V
Sbjct: 395 IGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKSGYGRELSGLGLMAFVNEHLV 454
Score = 171 bits (436), Expect = 4e-47
Identities = 42/140 (30%), Positives = 68/140 (48%)
Query: 223 KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK 282
K+ +K ++ G K+ KG F PT+ +++ D + +E+FGP+ + +
Sbjct: 315 KLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVE 374
Query: 283 TLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKES 342
+ I+ AND+ YGL S ++ ++ID A + I G IN + PFGG K+S
Sbjct: 375 DDNAAIQLANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKS 434
Query: 343 GIGRELGKAALDEYTELKTV 362
G GREL L + V
Sbjct: 435 GYGRELSGLGLMAFVNEHLV 454
Score = 164 bits (417), Expect = 2e-44
Identities = 36/145 (24%), Positives = 65/145 (44%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R V++ YD + + + K GDP + P K+ +K ++ G K
Sbjct: 270 RIIVEKSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAK 329
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
+ KG F PT+ +++ D + +E+FGP+ + + + I+ AND+ YG
Sbjct: 330 VFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYG 389
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
L S ++ ++ID A + I G
Sbjct: 390 LGSSVIGSDIDRAKKVSAQIETGMT 414
Score = 72.6 bits (179), Expect = 1e-13
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
+ + P G P+LLK A P +A A + ++AG P+G + L
Sbjct: 139 QVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGSLINLYP 188
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 244 bits (625), Expect = 5e-74
Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 25/246 (10%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD------MAYYY------CFVCAGSRTYV 422
+ +A + V LELGGK+P+V+ DAD+D + + C C R YV
Sbjct: 242 QIYKTSAEYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVC-TCV-ERLYV 299
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
+YD F+ K + KVGDP D Q GP+ + + + + ++QG + G
Sbjct: 300 HASVYDEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATG 359
Query: 483 GKR----KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 538
GK + G + EPTV +V D + EE FGP+ I+K ++++ IE ND+ YG
Sbjct: 360 GKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSMEQAIEFCNDSIYG 419
Query: 539 LASGIVTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYT 591
L++ + T + N IN G Q G+K+SG G E GK L++Y
Sbjct: 420 LSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFGGEDGKFGLEQYL 479
Query: 592 ELKTVT 597
E KTV
Sbjct: 480 EKKTVY 485
Score = 161 bits (409), Expect = 2e-43
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R YV +YD F+ K + KVGDP D Q GP+ + + + + ++QG
Sbjct: 296 RLYVHASVYDEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGAT 355
Query: 132 LEAGGKR----KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 187
+ GGK + G + EPTV +V D + EE FGP+ I+K ++++ IE ND
Sbjct: 356 VATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSMEQAIEFCND 415
Query: 188 TKYGLASGIVTTNIDTANTFAHAINAGSV 216
+ YGL++ + T + N + G V
Sbjct: 416 SIYGLSAYVHTQSFANINQAISDLEVGEV 444
Score = 161 bits (409), Expect = 3e-43
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKR----KGDKGYFIEPTVFSNVTDDFKI 266
N +D + + + ++QG + GGK + G + EPTV +V D +
Sbjct: 334 CNQREID-----NIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIV 388
Query: 267 AREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINC 326
EE FGP+ I+K ++++ IE ND+ YGL++ + T + N + G V+IN
Sbjct: 389 VHEETFGPILPIVKVSSMEQAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINR 448
Query: 327 YQAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
Q G+K+SG G E GK L++Y E KTV
Sbjct: 449 GMGEQHQGFHNGWKQSGFGGEDGKFGLEQYLEKKTVY 485
Score = 87.2 bits (217), Expect = 2e-18
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ K GPAL G ++LKP ++TPL + + ++AG PDGV++V+ G G
Sbjct: 164 LAGRKIGPALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGVLNVINGTGS 216
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 243 bits (622), Expect = 8e-74
Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 21/242 (8%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD------MAYYY------CFVCAGSRTYV 422
+ A ++K+VSLELGG +P ++ DAD+D +A + C VCA +R YV
Sbjct: 239 QLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTC-VCA-NRLYV 296
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
Q+ +YD F +K + + +GD D V GP +D + KV +I +E+G ++ G
Sbjct: 297 QDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCG 356
Query: 483 GKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
GK G F +PT+ +V + K+++EE FGP+ + +FK +VI +ANDT++GLA+
Sbjct: 357 GKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAY 416
Query: 543 IVTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKT 595
++ A IN G APFGG K SG+GRE K +++Y E+K
Sbjct: 417 FYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKY 476
Query: 596 VT 597
+
Sbjct: 477 MC 478
Score = 163 bits (414), Expect = 4e-44
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 270
I+ +V KV +I +E+G ++ GGK G F +PT+ +V + K+++EE
Sbjct: 331 IDEKAVA-----KVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEE 385
Query: 271 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV 330
FGP+ + +FK +VI +ANDT++GLA+ ++ A+ G V IN
Sbjct: 386 TFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIIS 445
Query: 331 VPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
APFGG K SG+GRE K +++Y E+K +
Sbjct: 446 NEVAPFGGIKASGLGREGSKYGIEDYLEIKYMC 478
Score = 161 bits (411), Expect = 1e-43
Identities = 48/145 (33%), Positives = 78/145 (53%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R YVQ+ +YD F +K + + +GD D V GP +D KV +I +E+G +
Sbjct: 293 RLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGAR 352
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
+ GGK G F +PT+ +V + K+++EE FGP+ + +FK +VI +ANDT++G
Sbjct: 353 VVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFG 412
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
LA+ ++ A+ G V
Sbjct: 413 LAAYFYARDLSRVFRVGEALEYGIV 437
Score = 87.6 bits (218), Expect = 2e-18
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M+ K GPALAAGC ++LKPA QTP +AL +A L +AG P GV +V+ G
Sbjct: 161 MITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAG 213
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 242 bits (621), Expect = 1e-73
Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 21/242 (8%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD------MAYYY------CFVCAGSRTYV 422
++ A +A +K+++LELGG +P ++ DAD+D +A Y C VC +R +V
Sbjct: 242 LLMAQSAPTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTC-VCT-NRFFV 299
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
E +YD F K + KVG + GP ++ KV ++I + +G L G
Sbjct: 300 HERVYDAFADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIADALAKGASLMTG 359
Query: 483 GKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
GKR F EPTV + V D +A+EE FGP+ + +F + +E++ ANDT++GLA+
Sbjct: 360 GKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAY 419
Query: 543 IVTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKT 595
+ + +I A A IN G APFGG K+SG+GRE +D+Y +K
Sbjct: 420 LYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIKY 479
Query: 596 VT 597
+
Sbjct: 480 LC 481
Score = 162 bits (413), Expect = 5e-44
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 270
IN +V KV ++I + +G L GGKR F EPTV + V D +A+EE
Sbjct: 334 INEAAVK-----KVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEE 388
Query: 271 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV 330
FGP+ + +F + +E++ ANDT++GLA+ + + +I A A+ G V IN
Sbjct: 389 TFGPLAPLFRFASEEELVRLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLIS 448
Query: 331 VPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
APFGG K+SG+GRE +D+Y +K +
Sbjct: 449 NEVAPFGGVKQSGLGREGSHYGIDDYVVIKYLC 481
Score = 161 bits (411), Expect = 1e-43
Identities = 48/145 (33%), Positives = 75/145 (51%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R +V E +YD F K + KVG + GP ++ KV ++I + +G
Sbjct: 296 RFFVHERVYDAFADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIADALAKGAS 355
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
L GGKR F EPTV + V D +A+EE FGP+ + +F + +E++ ANDT++G
Sbjct: 356 LMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEFG 415
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
LA+ + + +I A A+ G V
Sbjct: 416 LAAYLYSRDIGRVWRVAEALEYGMV 440
Score = 87.2 bits (217), Expect = 2e-18
Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M+A K GPALAAGCP+++KPAE TP +AL +A L ++AG P GV+SV+ G
Sbjct: 164 MIARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIGDPK 216
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 241 bits (617), Expect = 7e-73
Identities = 95/242 (39%), Positives = 130/242 (53%), Gaps = 23/242 (9%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD------MAYYY------CFVCAGSRTYV 422
++ A A +KR+SLELGG +P ++ DAD+D M Y C VCA +R YV
Sbjct: 262 LLMAQCAPTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTC-VCA-NRIYV 319
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
Q +YD F +K K KVG+ + V GP ++ + TKV +I+ V +G KL G
Sbjct: 320 QRGVYDKFAEKLAAKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITG 379
Query: 483 GKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASG 542
GK G G F EP + + VT D +A+EE FGP+ + F T +EVI +ANDT +GLA+
Sbjct: 380 GKELG--GLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQANDTIFGLAAY 437
Query: 543 IVTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELKT 595
T N A + A N G APFGG K+SG+GRE K ++EY E K
Sbjct: 438 FYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLGREGSKYGIEEYLETKY 497
Query: 596 VT 597
+
Sbjct: 498 IC 499
Score = 161 bits (409), Expect = 2e-43
Identities = 60/153 (39%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 270
I ++ KV +I+ V +G KL GGK G G F EP + + VT D +A+EE
Sbjct: 354 IEEKAIT-----KVKAHIEDAVSKGAKLITGGKELG--GLFFEPGILTGVTSDMLVAKEE 406
Query: 271 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV 330
FGP+ + F T +EVI +ANDT +GLA+ T N A + A+ G V N
Sbjct: 407 TFGPLAPLFAFDTEEEVIAQANDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLIS 466
Query: 331 VPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
APFGG K+SG+GRE K ++EY E K +
Sbjct: 467 NEVAPFGGVKQSGLGREGSKYGIEEYLETKYIC 499
Score = 160 bits (407), Expect = 5e-43
Identities = 58/145 (40%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R YVQ +YD F +K K KVG+ + V GP ++ TKV +I+ V +G K
Sbjct: 316 RIYVQRGVYDKFAEKLAAKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAK 375
Query: 132 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYG 191
L GGK G G F EP + + VT D +A+EE FGP+ + F T +EVI +ANDT +G
Sbjct: 376 LITGGKELG--GLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQANDTIFG 433
Query: 192 LASGIVTTNIDTANTFAHAINAGSV 216
LA+ T N A + A+ G V
Sbjct: 434 LAAYFYTENFSRAIRVSEALEYGMV 458
Score = 87.2 bits (217), Expect = 3e-18
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
M+ K PALAAGC ++++PA+ TPLTAL + L ++AG P GV+ ++ G
Sbjct: 184 MITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTGKAR 236
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 241 bits (617), Expect = 9e-73
Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 22/243 (9%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD------MAYYY------CFVCAGSRTYV 422
+ A +K+++LELGG +P ++ DAD++ +A + C VCA +R +V
Sbjct: 241 KLIVDTAEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTC-VCA-NRIFV 298
Query: 423 QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAG 482
E + D F +K E+ VGD + + GP ++ + F KV +++ +++G L AG
Sbjct: 299 HEKVADAFGQKLAERVNKMTVGDGMNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAG 358
Query: 483 GKRKGD-KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLAS 541
+ G F PTV V + +EE FGP+ + F+T +EVI+ NDT++GLAS
Sbjct: 359 KQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEVIDAGNDTEFGLAS 418
Query: 542 GIVTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
+ T + + A A N G+ P+APFGG K SGIGRE G L E+ E +
Sbjct: 419 YVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIGREGGLEGLFEFVEAQ 478
Query: 595 TVT 597
TV
Sbjct: 479 TVP 481
Score = 161 bits (409), Expect = 3e-43
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD-KGYFIEPTVFSNVTDDFKIARE 269
IN D KV +++ +++G L AG + G F PTV V + +E
Sbjct: 333 INKQGFD-----KVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQE 387
Query: 270 EIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQA 329
E FGP+ + F+T +EVI+ NDT++GLAS + T + + A A + G V N
Sbjct: 388 ETFGPLVPMALFRTEEEVIDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTG 447
Query: 330 VVPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
P+APFGG K SGIGRE G L E+ E +TV
Sbjct: 448 PTPEAPFGGMKASGIGREGGLEGLFEFVEAQTVP 481
Score = 159 bits (404), Expect = 1e-42
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGK 131
R +V E + D F +K E+ VGD + + GP ++ F KV +++ +++G
Sbjct: 295 RIFVHEKVADAFGQKLAERVNKMTVGDGMNDGIDIGPLINKQGFDKVKRHLQDALDKGAS 354
Query: 132 LEAGGKRKGD-KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
L AG + G F PTV V + +EE FGP+ + F+T +EVI+ NDT++
Sbjct: 355 LVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEVIDAGNDTEF 414
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GLAS + T + + A A + G V
Sbjct: 415 GLASYVFTADAERAQRVAAGLRFGHV 440
Score = 87.2 bits (217), Expect = 3e-18
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
M+A K ALAAGCP ++KPA +TPLT + ++ + PDG+++++ G
Sbjct: 163 MIAKKLSAALAAGCPSVIKPASETPLTMIAFFSVMDKLDLPDGMVNLVMG 212
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 240 bits (614), Expect = 2e-72
Identities = 87/243 (35%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVD------MAYYY------CFVCAGSRTYV 422
I+ AA+++KRVS+ELGG +P ++ A+VD MA + C VC+ ++ V
Sbjct: 243 ILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTC-VCS-NQFLV 300
Query: 423 QEDIYDTFVKKAVEKAAAR-KVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEA 481
Q I+D FVK E +VG+ F++ QGP ++ + KV + V +G +
Sbjct: 301 QRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVT 360
Query: 482 GGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLAS 541
GGKR F EPT+ NVT D EE FGP+ +IKF T +E I AN GLA
Sbjct: 361 GGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAG 420
Query: 542 GIVTTNIDTANTFAHA-------INAGSAVVPQAPFGGFKESGIGRELGKAALDEYTELK 594
+ + A +N G + PFGG K+SG+GRE K +DEY ELK
Sbjct: 421 YFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELK 480
Query: 595 TVT 597
V
Sbjct: 481 YVC 483
Score = 163 bits (415), Expect = 3e-44
Identities = 57/153 (37%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 211 INAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREE 270
IN +V+ KV + V +G + GGKR F EPT+ NVT D EE
Sbjct: 336 INEKAVE-----KVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEE 390
Query: 271 IFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV 330
FGP+ +IKF T +E I AN GLA + + A + G V +N
Sbjct: 391 TFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLIS 450
Query: 331 VPQAPFGGFKESGIGRELGKAALDEYTELKTVT 363
+ PFGG K+SG+GRE K +DEY ELK V
Sbjct: 451 SVECPFGGVKQSGLGREGSKYGIDEYLELKYVC 483
Score = 158 bits (403), Expect = 2e-42
Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 72 RTYVQEDIYDTFVKKAVEKAAAR-KVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+ VQ I+D FVK E +VG+ F++ QGP ++ KV + V +G
Sbjct: 297 QFLVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGA 356
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
+ GGKR F EPT+ NVT D EE FGP+ +IKF T +E I AN
Sbjct: 357 TVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADV 416
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
GLA + + A + G V
Sbjct: 417 GLAGYFYSQDPAQIWRVAEQLEVGMV 442
Score = 87.6 bits (218), Expect = 2e-18
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWR 60
M+ K G ALAAGC V++KPAE TP +AL +A L QAG P GV +V+P +
Sbjct: 162 MITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGE 221
Query: 61 KSCLSPL 67
C PL
Sbjct: 222 AICTDPL 228
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 246 bits (629), Expect = 7e-71
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 30/259 (11%)
Query: 371 TSHSIMAAAAA-----SNLKRVSLELGGKSPLVICADADVDM--------AYYY----CF 413
T I+ AA +N+K++ E+GGK+ ++I DAD+D A+ + C
Sbjct: 757 TGLRIIERAAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKC- 815
Query: 414 VCAGSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGV 473
A SR V + +YD F+++ V A A KVG D + G D + + Y + G
Sbjct: 816 -SACSRVIVLDAVYDKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGK 874
Query: 474 EQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAN 533
+G L +GYF+ T+ + + +IA+EEIFGPV +++ K D+ IE AN
Sbjct: 875 REGHVL-YESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWAN 933
Query: 534 DTKYGLASGIVTTNIDTANTFAHAINAGS---------AVVPQAPFGGFKESGIGREL-G 583
T++ L GI + + + G+ A+V + PFGG + SG+G + G
Sbjct: 934 STQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGTKAGG 993
Query: 584 KAALDEYTELKTVTESPLR 602
L + + + VTE+ +R
Sbjct: 994 PDYLLHFMDPRVVTENTMR 1012
Score = 178 bits (454), Expect = 1e-47
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
D + + Y + G +G L +GYF+ T+ + + +IA+EEIFGPV
Sbjct: 858 ADDKAMKSIKEYAEIGKREGHVL-YESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPV 916
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQ--AVVPQ 333
+++ K D+ IE AN T++ L GI + + + G+++IN A+V +
Sbjct: 917 LAVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVER 976
Query: 334 APFGGFKESGIGREL-GKAALDEYTELKTVTESPLR 368
PFGG + SG+G + G L + + + VTE+ +R
Sbjct: 977 QPFGGARMSGVGTKAGGPDYLLHFMDPRVVTENTMR 1012
Score = 175 bits (447), Expect = 1e-46
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
SR V + +YD F+++ V A A KVG D + G D + Y + G +G
Sbjct: 819 SRVIVLDAVYDKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGH 878
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
L +GYF+ T+ + + +IA+EEIFGPV +++ K D+ IE AN T++
Sbjct: 879 VL-YESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQF 937
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
L GI + + + G++
Sbjct: 938 ALTGGIFSRSPEHLAKARREFRVGNL 963
Score = 81.6 bits (202), Expect = 3e-16
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGP 53
+ A+ G V+ KP+ T + ++ L ++AG P+GV + PG G
Sbjct: 682 ISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGS 734
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 201 bits (512), Expect = 3e-55
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 29/252 (11%)
Query: 371 TSHSIMAAAAASN--LKRVSLELGGKSPLVICADADVDMA----YYYCFVCAG------S 418
+ SI A AA + + + E GG + ++ A A + F AG
Sbjct: 739 VARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALR 798
Query: 419 RTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGK 478
+VQED+ D ++ A K+GDP D + GP +D E ++ +I + +
Sbjct: 799 LLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARM-KTEAR 857
Query: 479 LEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDTK 536
L G +G F+ P +F + EE+FGP+ +++++ L+ V+ T
Sbjct: 858 LHFAGPA--PEGCFVAPHIFELT--EAGQLTEEVFGPILHVVRYRPENLERVLRAIERTG 913
Query: 537 YGLASGIVTTNIDTANTFAHAINAGS---------AVVPQAPFGGFKESGIG-RELGKAA 586
YGL G+ + D+ + G+ AVV PFGG SG G + G
Sbjct: 914 YGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAGGPHY 973
Query: 587 LDEYTELKTVTE 598
L + +TVT
Sbjct: 974 LARFATEQTVTI 985
Score = 141 bits (357), Expect = 2e-35
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGG 130
+VQED+ D ++ A K+GDP D + GP +D ++ +I +
Sbjct: 798 RLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARM-KTEA 856
Query: 131 KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERANDT 188
+L G +G F+ P +F + EE+FGP+ +++++ L+ V+ T
Sbjct: 857 RLHFAGPA--PEGCFVAPHIFELT--EAGQLTEEVFGPILHVVRYRPENLERVLRAIERT 912
Query: 189 KYGLASGIVTTNIDTANTFAHAINAGSV 216
YGL G+ + D+ + G++
Sbjct: 913 GYGLTLGVHSRIDDSIEAIIDRVQVGNI 940
Score = 140 bits (355), Expect = 4e-35
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+D E ++ +I + +L G +G F+ P +F + EE+FGP+
Sbjct: 837 IDVEAKQRLDAHIARM-KTEARLHFAGPA--PEGCFVAPHIFELT--EAGQLTEEVFGPI 891
Query: 276 QTIIKFK--TLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVV 331
+++++ L+ V+ T YGL G+ + D+ + G++++N AVV
Sbjct: 892 LHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVV 951
Query: 332 PQAPFGGFKESGIG-RELGKAALDEYTELKTVTESPLRSYTSHSIMAA 378
PFGG SG G + G L + +TVT + + + +++A
Sbjct: 952 GVQPFGGNGLSGTGPKAGGPHYLARFATEQTVTINTAAAGGNAALLAG 999
Score = 65.2 bits (159), Expect = 4e-11
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYG 52
+ AL AG V+ KPAEQTP A AL +AG P + ++ G G
Sbjct: 667 LGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDG 716
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 177 bits (450), Expect = 4e-49
Identities = 82/241 (34%), Positives = 122/241 (50%), Gaps = 23/241 (9%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVDMAYYY----CFVCAGSR------TYVQEDIYDT 429
+ NLKRV G K+ ++ DA+++ F AG R V+E I D
Sbjct: 239 GSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADE 298
Query: 430 FVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG-D 488
F+ K EK A K+G+ D V GP + + + L+YI+ G+E+G +L G+ D
Sbjct: 299 FMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSD 358
Query: 489 KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNI 548
GYF+ PT+F NVT + I ++EIF PV ++I+ K L E IE AN +++ + + T+N
Sbjct: 359 DGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNS 418
Query: 549 DTANTFAHAINAGSAV-------VPQA--PFGGFKESGIG--RELGKAALDEYTELKTVT 597
+ F I+AG + P A PF G+K S G GK ++D YT K VT
Sbjct: 419 NAIRYFRENIDAGM-LGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVT 477
Query: 598 E 598
Sbjct: 478 A 478
Score = 135 bits (343), Expect = 2e-34
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Query: 75 VQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEA 134
V+E I D F+ K EK A K+G+ D V GP + + L+YI+ G+E+G +L
Sbjct: 291 VEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVC 350
Query: 135 GGKRKG-DKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 193
G+ D GYF+ PT+F NVT + I ++EIF PV ++I+ K L E IE AN +++
Sbjct: 351 DGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANG 410
Query: 194 SGIVTTNIDTANTFAHAINAGSV 216
+ + T+N + F I+AG +
Sbjct: 411 ACLFTSNSNAIRYFRENIDAGML 433
Score = 133 bits (337), Expect = 1e-33
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG-DKGYFIEPTVFSNVTDDFKIAREEIFGP 274
+ + + L+YI+ G+E+G +L G+ D GYF+ PT+F NVT + I ++EIF P
Sbjct: 326 IREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAP 385
Query: 275 VQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV-VPQ 333
V ++I+ K L E IE AN +++ + + T+N + F I+AG + IN +
Sbjct: 386 VLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAF 445
Query: 334 APFGGFKESGIG--RELGKAALDEYTELKTVTE 364
PF G+K S G GK ++D YT K VT
Sbjct: 446 FPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTA 478
Score = 59.1 bits (144), Expect = 2e-09
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
W + A+A G +LKP+E+TPL + L ++AG P GV +V+ G
Sbjct: 160 WMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYG 206
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 170 bits (434), Expect = 1e-46
Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 27/245 (11%)
Query: 380 AASNLKRVSLELGGKSPLVICADADVDMAYYY----CFVCAGSR-------TYVQEDIYD 428
AA N KR G K+ ++I DAD+D A + AG R V E+ +
Sbjct: 260 AAMNGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETAN 319
Query: 429 TFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKR--- 485
+ K V + ++G D+ GP V E ++ + I SG+EQG KL G+
Sbjct: 320 RLIDKLVPMVESLRIGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKL 379
Query: 486 -KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIV 544
+ G+FI +F +VT D I + EIFGPV ++++ + +E + +YG I
Sbjct: 380 QGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYEEALSLPMKHEYGNGVAIY 439
Query: 545 TTNIDTANTFAHAINAGSAV-------VPQA--PFGGFKESGIG--RELGKAALDEYTEL 593
T + D A FA IN G V VP A FGG+K S G + G ++ +T
Sbjct: 440 TRDGDAARDFASRINIGM-VGVNVPIPVPLAYHSFGGWKSSSFGDLNQHGTDSIKFWTRT 498
Query: 594 KTVTE 598
KT+T
Sbjct: 499 KTITS 503
Score = 131 bits (333), Expect = 6e-33
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 75 VQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEA 134
V E+ + + K V + ++G D+ GP V ++ + I SG+EQG KL
Sbjct: 313 VGEETANRLIDKLVPMVESLRIGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVV 372
Query: 135 GGKR----KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY 190
G+ + G+FI +F +VT D I + EIFGPV ++++ + +E + +Y
Sbjct: 373 DGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYEEALSLPMKHEY 432
Query: 191 GLASGIVTTNIDTANTFAHAINAGSV 216
G I T + D A FA IN G V
Sbjct: 433 GNGVAIYTRDGDAARDFASRINIGMV 458
Score = 128 bits (325), Expect = 6e-32
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKR----KGDKGYFIEPTVFSNVTDDFKIAREEI 271
V E ++ + I SG+EQG KL G+ + G+FI +F +VT D I + EI
Sbjct: 348 VTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEI 407
Query: 272 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWINCYQAV- 330
FGPV ++++ + +E + +YG I T + D A FA IN G V +N V
Sbjct: 408 FGPVLSVVRARNYEEALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVP 467
Query: 331 VPQAPFGGFKESGIG--RELGKAALDEYTELKTVTE 364
+ FGG+K S G + G ++ +T KT+T
Sbjct: 468 LAYHSFGGWKSSSFGDLNQHGTDSIKFWTRTKTITS 503
Score = 59.2 bits (144), Expect = 2e-09
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 4 WKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
W + PA+A G +LKP+E+ P + +A L +AG P G+++V+ G
Sbjct: 181 WMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNG 227
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 159 bits (404), Expect = 5e-43
Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 25/215 (11%)
Query: 376 MAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGSRTYVQED 425
M AA S+ K G P+VI AD+ A VC + V ++
Sbjct: 198 MVKAAYSSGKPAIGVGAGNVPVVIDETADIKRAVASVLMSKTFDNGVVCASEQAVIVVDE 257
Query: 426 IYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKR 485
+YD ++ A DK V++ +D + K++ E G +
Sbjct: 258 VYDEVKERFASHKAHVLSKTDADK-VRKVLLIDGALNAKIVGQP-----ATAIAEMAGVK 311
Query: 486 KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERA----NDTKYGLAS 541
+ V+ D A E+ P + + ++ + +A G S
Sbjct: 312 VPADTKVLIGEGLGKVSYDDAFAHEK-LSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTS 370
Query: 542 GIVT---TNIDTANTFAHAINAGSAVVPQ-APFGG 572
G+ T N D F + ++ GG
Sbjct: 371 GLYTNQDVNADRIRYFGDKMKTARILINIPTTHGG 405
Score = 132 bits (333), Expect = 3e-33
Identities = 39/287 (13%), Positives = 69/287 (24%), Gaps = 81/287 (28%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQA----GFPDGVISVLPGYGP--- 53
+K +L ++ P + + A L A G P +I +
Sbjct: 119 TAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELS 178
Query: 54 ---MSAPYWRK--------------SCLSP----LAYRSRTYVQEDIYDTFVKKAVEKA- 91
M S P A + E D +K+AV
Sbjct: 179 NALMKHDDIALILATGGPGMVKAAYSSGKPAIGVGAGNVPVVIDETA-D--IKRAVASVL 235
Query: 92 -----------------------------------AARKVGDPFDKSVQQGPQVDAVMFT 116
A DK V++ +D +
Sbjct: 236 MSKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADK-VRKVLLIDGALNA 294
Query: 117 KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK 176
K++ E G + + V+ D A E+ P + +
Sbjct: 295 KIVGQP-----ATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAHEK-LSPTLGMFRAD 348
Query: 177 TLDEVIERA----NDTKYGLASGIVT---TNIDTANTFAHAINAGSV 216
++ + +A G SG+ T N D F + +
Sbjct: 349 NFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMKTARI 395
Score = 100 bits (252), Expect = 8e-23
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 16/140 (11%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+D + K++ E G + + V+ D A E+ P
Sbjct: 288 IDGALNAKIVGQP-----ATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAHEK-LSPT 341
Query: 276 QTIIKFKTLDEVIERA----NDTKYGLASGIVT---TNIDTANTFAHAINAGSVWINCYQ 328
+ + ++ + +A G SG+ T N D F + + IN
Sbjct: 342 LGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMKTARILINIPT 401
Query: 329 ---AVVPQAPFGGFKESGIG 345
+ F +G
Sbjct: 402 THGGIGDLYNFNVAPSLTLG 421
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 158 bits (402), Expect = 3e-42
Identities = 35/258 (13%), Positives = 68/258 (26%), Gaps = 52/258 (20%)
Query: 376 MAAAAASNLKRVS--LELGGKSPLVICADADVDMAYY--------------YCFVCAGSR 419
+ A + + ELG +P I A A +C
Sbjct: 237 LFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFC--TKPGV 294
Query: 420 TYVQED-IYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGK 478
+ F+ A+ + S P + ++V + G + G
Sbjct: 295 VFALNTPETQAFI------ETAQSLIRQQSPSTLLTPGIRDSYQSQV---VSRGSDDGID 345
Query: 479 LEAGGKRKGDKGYFIEPTVFSNVTDDF---KIAREEIFGPVQTIIKFKTLDEVIERANDT 535
+ + +F ++++ EEIFGP I+ + + +++ +
Sbjct: 346 VTFSQAE----SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENVADMLSLSEML 401
Query: 536 KYGLASGIVTTNIDTANTFAHA-----------IN---AGSAVVPQAPFGGFKES---GI 578
L + I T D N G V GG +
Sbjct: 402 AGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSA 461
Query: 579 GRELGKAALDEYTELKTV 596
+G A+ +
Sbjct: 462 STSVGAEAIHRWLRPVAY 479
Score = 120 bits (303), Expect = 4e-29
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 17/149 (11%)
Query: 227 YIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDF---KIAREEIFGPVQTIIKFKT 283
+ G + G + + +F ++++ EEIFGP I+ +
Sbjct: 335 VVSRGSDDGIDVTFSQAE----SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCEN 390
Query: 284 LDEVIERANDTKYGLASGIVTTNIDTANTFAHA----INAGSVWINCY---QAVVPQAPF 336
+ +++ + L + I T D AG + N + V
Sbjct: 391 VADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVH 450
Query: 337 GGFKES---GIGRELGKAALDEYTELKTV 362
GG + +G A+ +
Sbjct: 451 GGPYPASTHSASTSVGAEAIHRWLRPVAY 479
Score = 102 bits (256), Expect = 3e-23
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 21/150 (14%)
Query: 63 CLSPLAYRSRTYVQED-IYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNY 121
C P + F+ A+ + S P + ++V
Sbjct: 289 CTKP----GVVFALNTPETQAFI------ETAQSLIRQQSPSTLLTPGIRDSYQSQV--- 335
Query: 122 IKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDF---KIAREEIFGPVQTIIKFKTL 178
+ G + G + + +F ++++ EEIFGP I+ + +
Sbjct: 336 VSRGSDDGIDVTFSQAE----SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENV 391
Query: 179 DEVIERANDTKYGLASGIVTTNIDTANTFA 208
+++ + L + I T D
Sbjct: 392 ADMLSLSEMLAGSLTATIHATEEDYPQVSQ 421
Score = 77.0 bits (190), Expect = 4e-15
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQA----GFPDGVISVLPGYGP 53
ALAAGCPV++K P T+ VA +QA P + ++L G
Sbjct: 154 AAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQR 210
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 147 bits (374), Expect = 2e-38
Identities = 42/256 (16%), Positives = 68/256 (26%), Gaps = 47/256 (18%)
Query: 375 IMAAAAAS-NLKRVSLELGGKSPLVICADADVDMAYYY-------CFVCAG------SRT 420
+ AA ELG +P+ + +A A + AG
Sbjct: 270 LFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIA 329
Query: 421 YVQEDI-YDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKL 479
V E D F AVE A + + + F K
Sbjct: 330 VVIEGADADRFTTAAVEALAKVAPQTMLTDGIAKAYRDGQARFAT---------RNAVKP 380
Query: 480 EAGGKRKGDKGYFIEPTVFSNVTDDF---KIAREEIFGPVQTIIKFKTLDEVIERANDTK 536
+ G P +F F EE+FGP+ +++ + E+ E A +
Sbjct: 381 LLATESSG---RDASPNLFETTGAQFLADHALGEEVFGPLGLVVRVGSPAEMEELARGFQ 437
Query: 537 YGLASGIVTTNIDTANTFAHA-----------IN---AGSAVVP-QAPFGGFKESGIGR- 580
L + I D +N G VV G + S
Sbjct: 438 GQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNFGA 497
Query: 581 -ELGKAALDEYTELKT 595
+G ++ +
Sbjct: 498 TSVGTMSIRRFLRPVA 513
Score = 110 bits (276), Expect = 1e-25
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 15/173 (8%)
Query: 204 ANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVT 261
A+ + + + + G + A G P +F
Sbjct: 341 TTAAVEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATESSGRDASPNLFETTG 400
Query: 262 DDF---KIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHA-- 316
F EE+FGP+ +++ + E+ E A + L + I D
Sbjct: 401 AQFLADHALGEEVFGPLGLVVRVGSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPV 460
Query: 317 --INAGSVWINCYQAVV----PQAPFGGFKESGIGR--ELGKAALDEYTELKT 361
AG V +N + V G + S +G ++ +
Sbjct: 461 LERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNFGATSVGTMSIRRFLRPVA 513
Score = 102 bits (255), Expect = 4e-23
Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 24/154 (15%)
Query: 63 CLSPLAYRSRTYVQEDI-YDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNY 121
C +P V E D F AVE A + + +
Sbjct: 323 CTNP----GIAVVIEGADADRFTTAAVEALAKVAPQTMLTDGIAKAYR------------ 366
Query: 122 IKSGVEQGGKLEAGGKRKG--DKGYFIEPTVFSNVTDDF---KIAREEIFGPVQTIIKFK 176
G + A G P +F F EE+FGP+ +++
Sbjct: 367 --DGQARFATRNAVKPLLATESSGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRVG 424
Query: 177 TLDEVIERANDTKYGLASGIVTTNIDTANTFAHA 210
+ E+ E A + L + I D
Sbjct: 425 SPAEMEELARGFQGQLTATIHMDAGDLETARRLR 458
Score = 70.9 bits (174), Expect = 4e-13
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 3 AWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQA----GFPDGVISVLPGYGP 53
ALAAGCPV++K P T VA A G GV S++ G
Sbjct: 189 GGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSR 243
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 143 bits (363), Expect = 9e-37
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 33/254 (12%)
Query: 383 NLKRVSLELGGKSPLVICADADVDM--------AYYY----CFVCAGSRTYVQEDIYDTF 430
R++ E GGK+ + + ADVD A+ Y C A SR YV + ++
Sbjct: 307 TFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKC--SACSRLYVPKSLWPQI 364
Query: 431 VKKAVEKAAARKVGDPF-DKSVQQGPQVDAEMFTKVLNYIKSGVEQGG-KLEAGGKRKGD 488
+ +E+ + KVGDP D +DA+ F ++ +++ + AGG+
Sbjct: 365 KGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNES 424
Query: 489 KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERAND-TKYGLASGIVT 545
GY++EP + + I +EEIFGPV T+ + E ++ + T YGL +
Sbjct: 425 VGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFA 484
Query: 546 TN---IDTANTFAHA------INAGS--AVVPQAPFGGFKESGIGRELGKAA-LDEYTEL 593
+ + A IN S +VV Q PFGG + SG + G + +T
Sbjct: 485 QDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGGPHYILRWTSP 544
Query: 594 KTVTES--PLRSYT 605
+ + E+ PL +
Sbjct: 545 QVIKETHKPLGDWR 558
Score = 113 bits (286), Expect = 8e-27
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 71 SRTYVQEDIYDTFVKKAVEKAAARKVGDPF-DKSVQQGPQVDAVMFTKVLNYIKSGVEQG 129
SR YV + ++ + +E+ + KVGDP D +DA F ++ +++
Sbjct: 352 SRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSP 411
Query: 130 G-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERAN 186
+ AGG+ GY++EP + + I +EEIFGPV T+ + E ++ +
Sbjct: 412 SLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVD 471
Query: 187 D-TKYGLASGIVTTN 200
T YGL + +
Sbjct: 472 STTSYGLTGAVFAQD 486
Score = 108 bits (272), Expect = 5e-25
Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 24/208 (11%)
Query: 176 KTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVEQG 235
+ ++E + K G D A F +A +DA+ F ++ +++
Sbjct: 363 QIKGRLLEEHSRIKVG----------DPAEDFGTFFSA-VIDAKAFARIKKWLEHARSSP 411
Query: 236 G-KLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFK--TLDEVIERAN 292
+ AGG+ GY++EP + + I +EEIFGPV T+ + E ++ +
Sbjct: 412 SLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVD 471
Query: 293 D-TKYGLASGIVTTN---IDTANTFAHAINAGSVWINCYQ--AVVPQAPFGGFKESGIGR 346
T YGL + + + A AG+ +IN +VV Q PFGG + SG
Sbjct: 472 STTSYGLTGAVFAQDKAIVQEATRMLR-NAAGNFYINDKSTGSVVGQQPFGGARASGTND 530
Query: 347 ELGKAA-LDEYTELKTVTES--PLRSYT 371
+ G + +T + + E+ PL +
Sbjct: 531 KPGGPHYILRWTSPQVIKETHKPLGDWR 558
Score = 60.7 bits (148), Expect = 8e-10
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPM 54
G VL KP++ L + V + ++AG P +I +P GP
Sbjct: 223 PALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPT 268
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 133 bits (336), Expect = 1e-33
Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 28/248 (11%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCFVCAGSRT-------YVQ 423
I+ AAA +L V+LELGGKSP + + D+D+A + F+ +G +T
Sbjct: 211 IIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNSG-QTCVAPDYILCD 269
Query: 424 EDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGG 483
I + V+ ++K+ G+ KS G + A F +V+ I+ G K+ GG
Sbjct: 270 PSIQNQIVE-KLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE-----GQKVAYGG 323
Query: 484 KRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGI 543
+I PT+ ++V + +EEIFGPV I+ ++L+E I+ N + LA +
Sbjct: 324 TGD-AATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYM 382
Query: 544 VTTNIDTANTFAHAINAGSAVV---------PQAPFGGFKESGIGRELGKAALDEYTELK 594
++N ++G PFGG SG+G GK + + ++ +
Sbjct: 383 FSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSFETFSHRR 442
Query: 595 TVTESPLR 602
+ PL
Sbjct: 443 SCLVRPLM 450
Score = 98.0 bits (245), Expect = 7e-22
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
+ A F +V+ I+ G K+ GG +I PT+ ++V + +EEIFGPV
Sbjct: 302 ISARHFQRVMGLIE-----GQKVAYGGTGD-AATRYIAPTILTDVDPQSPVMQEEIFGPV 355
Query: 276 QTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVPQ 333
I+ ++L+E I+ N + LA + ++N ++G V N +
Sbjct: 356 LPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHS 415
Query: 334 APFGGFKESGIGRELGKAALDEYTELKTVTESPLR 368
PFGG SG+G GK + + ++ ++ PL
Sbjct: 416 LPFGGVGNSGMGSYHGKKSFETFSHRRSCLVRPLM 450
Score = 71.4 bits (176), Expect = 2e-13
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 74 YVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLE 133
I + V+ ++K+ G+ KS G + A F +V+ I+ G K+
Sbjct: 267 LCDPSIQNQIVE-KLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE-----GQKVA 320
Query: 134 AGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLA 193
GG +I PT+ ++V + +EEIFGPV I+ ++L+E I+ N + LA
Sbjct: 321 YGGTGD-AATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLA 379
Query: 194 SGIVTTNIDTANTFAHAINAGSV 216
+ ++N ++G V
Sbjct: 380 LYMFSSNDKVIKKMIAETSSGGV 402
Score = 40.6 bits (96), Expect = 0.001
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
A+AAG V+LKP+E + A +A + Q + V+ G
Sbjct: 144 AIAAGNAVVLKPSELSENMASLLATIIPQY-LDKDLYPVING 184
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 122 bits (308), Expect = 5e-30
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 21/242 (8%)
Query: 375 IMAAAAASNLKRVSLELGGKSPLVICADADVDMA----YYYCFVCAGSRTYVQED--IYD 428
++ AAA +L V LELGGK PL++ DAD+D + F+ +G +T + D
Sbjct: 221 VVMQAAAKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSG-QTXIAPDYLYVH 279
Query: 429 TFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGD 488
VK A+ + +V + G V ++++ ++ G++ G +
Sbjct: 280 YSVKDALLERLVERVKTELPEINSTGKLVTERQVQRLVSLLE---ATQGQVLVGSQADVS 336
Query: 489 KGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVTTN 547
K + TV V + + EE+FGP+ +++F ++ I++ N LA + +
Sbjct: 337 KRA-LSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKD 395
Query: 548 IDTANTFAHAINAGSAVV---------PQAPFGGFKESGIGRELGKAALDEYTELKTVTE 598
+D A + I +G A V P PFGG SG+G G + +T K+V
Sbjct: 396 MDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRI 455
Query: 599 SP 600
P
Sbjct: 456 VP 457
Score = 86.3 bits (214), Expect = 4e-18
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 7/154 (4%)
Query: 216 VDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPV 275
V ++++ ++ G++ G + K + TV V + + EE+FGP+
Sbjct: 308 VTERQVQRLVSLLE---ATQGQVLVGSQADVSKRA-LSATVVDGVEWNDPLMSEELFGPI 363
Query: 276 QTIIKFKTLDEVIERANDTK-YGLASGIVTTNIDTANTFAHAINAGSVWIN--CYQAVVP 332
+++F ++ I++ N LA + ++D A + I +G +N A P
Sbjct: 364 LPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQIQSGDAQVNGVMLHAFSP 423
Query: 333 QAPFGGFKESGIGRELGKAALDEYTELKTVTESP 366
PFGG SG+G G + +T K+V P
Sbjct: 424 YLPFGGIGASGMGEYHGHFSYLTFTHKKSVRIVP 457
Score = 57.4 bits (139), Expect = 8e-09
Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Query: 83 FVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGVEQGGKLEAGGKRKGDK 142
+V +V+ A ++ + + + ++ + + + S +E G +
Sbjct: 277 YVHYSVKDALLERLVERVKTELPEINSTGKLVTERQVQRLVSLLEATQGQVLVGSQADVS 336
Query: 143 GYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTK-YGLASGIVTTNI 201
+ TV V + + EE+FGP+ +++F ++ I++ N LA + ++
Sbjct: 337 KRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDM 396
Query: 202 DTANTFAHAINAGSV 216
D A + I +G
Sbjct: 397 DVAKGIINQIQSGDA 411
Score = 40.8 bits (96), Expect = 0.001
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 9 ALAAGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPG 50
A+ G ++KP+E TP T+ + + +A F ++V+ G
Sbjct: 154 AIIGGNTCIIKPSETTPETSAVIEKIIAEA-FAPEYVAVIQG 194
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 116 bits (292), Expect = 7e-28
Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 22/212 (10%)
Query: 376 MAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCF---------VC-AGSRTYVQED 425
M AA S+ G P I A++ A + +C + V+
Sbjct: 203 MVKAAYSSGTPAIGVGPGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERV 262
Query: 426 IYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLNYIKSGVEQGGKLEAGGKR 485
+ + + ++ A ++VQ G + + + V+ L AG
Sbjct: 263 NKEAVIAEFRKQGAHFLSDA---EAVQLGKFILRPNGSMNPAIVGKSVQHIANL-AGLTV 318
Query: 486 KGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKY----GLAS 541
D I + V + E P+ +T E E + D Y G
Sbjct: 319 PADARVLIAEE--TKVGAKIPYS-REKLAPILAFYTAETWQEACELSMDILYHEGAGHTL 375
Query: 542 GIVTTNIDTANTFAHAINAGSAVVPQ-APFGG 572
I + + + FA +V GG
Sbjct: 376 IIHSEDKEIIREFALKKPVSRLLVNTPGALGG 407
Score = 99.8 bits (249), Expect = 2e-22
Identities = 39/281 (13%), Positives = 70/281 (24%), Gaps = 72/281 (25%)
Query: 1 MLAWKWGPALAAGCPVLLKPAEQTPLTALYVAALTQQ----AGFPDGVISVLPGYGP--- 53
+ +K ++ AG ++ P L + + AG P G IS +
Sbjct: 124 TVIYKTLISIKAGNSIVFSPHPNALKAILETVRIISEAAEKAGCPKGAISCMTVPTIQGT 183
Query: 54 ---MSAPYWRK--------------SCLSPLAY----RSRTYVQEDIYDTFVKKAVEKAA 92
M S +P +++ + +AV+
Sbjct: 184 DQLMKHKDTAVILATGGSAMVKAAYSSGTPAIGVGPGNGPAFIERSAN---IPRAVKHIL 240
Query: 93 ARKVGD---------------------------------PFDKSVQQGPQVDAVMFTKVL 119
K D ++VQ G + +
Sbjct: 241 DSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNP 300
Query: 120 NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 179
+ V+ L AG D I + V + E P+ +T
Sbjct: 301 AIVGKSVQHIANL-AGLTVPADARVLIAEE--TKVGAKIPYS-REKLAPILAFYTAETWQ 356
Query: 180 EVIERANDTKY----GLASGIVTTNIDTANTFAHAINAGSV 216
E E + D Y G I + + + FA +
Sbjct: 357 EACELSMDILYHEGAGHTLIIHSEDKEIIREFALKKPVSRL 397
Score = 79.3 bits (196), Expect = 8e-16
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 226 NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLD 285
+ V+ L AG D I + V + E P+ +T
Sbjct: 301 AIVGKSVQHIANL-AGLTVPADARVLIAEE--TKVGAKIPYS-REKLAPILAFYTAETWQ 356
Query: 286 EVIERANDTKY----GLASGIVTTNIDTANTFAHAINAGSVWIN 325
E E + D Y G I + + + FA + +N
Sbjct: 357 EACELSMDILYHEGAGHTLIIHSEDKEIIREFALKKPVSRLLVN 400
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 3e-09
Identities = 97/541 (17%), Positives = 171/541 (31%), Gaps = 186/541 (34%)
Query: 12 AGCPVLLKPAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSPLAYRS 71
+ +P ++ +AL+ A A +++ G G +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQL----VAIFGGQGN-----------------T 166
Query: 72 RTYVQE--DIYDT---FVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYIKSGV 126
Y +E D+Y T V ++ +A + ++ + V FT+ LN I +
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAET-----LSELIRTTLDAEKV-FTQGLN-ILEWL 219
Query: 127 EQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQT---IIKFKTLD---- 179
E DK Y + + S + I G +Q ++ K L
Sbjct: 220 ENPS-------NTPDKDYLLSIPI-S-----CPL----I-GVIQLAHYVVTAKLLGFTPG 261
Query: 180 EVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFT-------KVLNYIKSGV 232
E+ G + G+VT A AI A + E F VL +I GV
Sbjct: 262 ELRSYLKGAT-GHSQGLVT---------AVAI-AETDSWESFFVSVRKAITVLFFI--GV 308
Query: 233 E-QGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTI--IKFKTLDEVIE 289
EA + P+ + +D E + P+ +I + + + + +
Sbjct: 309 RCY----EAYPN------TSLPPS----ILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 290 RANDTKYGLASG--IVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKES--GIG 345
+ N L +G + + ++ A VV G +S G+
Sbjct: 355 KTNSH---LPAGKQVEISLVNGAKNL----------------VV-----SGPPQSLYGLN 390
Query: 346 RELGK----AALD----EYTELK--------TVTESPLRSYTSHS-IMAAAAA---SNLK 385
L K + LD ++E K V SP HS ++ A+ +L
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-SPF-----HSHLLVPASDLINKDLV 444
Query: 386 RVSLELGGKS---PLVICADADVDMAYYYCFVCAGSRTY---VQEDIYDTFVKKAV--EK 437
+ ++ K P V D+ R + E I D ++ V E
Sbjct: 445 KNNVSFNAKDIQIP-VYDTFDGSDL-----------RVLSGSISERIVDCIIRLPVKWET 492
Query: 438 AA---ARKVGDPFDKSVQQGPQVDAEMFTKVLNYIK--SGVE--QGGKLEAGGKRKGDKG 490
A + D F GP + + + + K +GV G L+ D G
Sbjct: 493 TTQFKATHILD-F------GPGGASGL-GVLTHRNKDGTGVRVIVAGTLDIN--PDDDYG 542
Query: 491 Y 491
+
Sbjct: 543 F 543
Score = 50.0 bits (119), Expect = 2e-06
Identities = 108/623 (17%), Positives = 187/623 (30%), Gaps = 175/623 (28%)
Query: 27 TALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCLSPLAYRSRTYVQEDIYDTFVKK 86
TA + A Q F + G+ P + + L + + +V
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEP----TTPAELVGK---------FLGYVSS 70
Query: 87 AVEKAAA-------RKVGDPFDKSVQQG----------PQVDAVMFTKVLNYIKSGVEQG 129
VE + F+ +G Q + K IK+ +
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT-- 128
Query: 130 GKLEAGGKRKGDKGYFIEPTVFSNVTD-DFKIAREEIFGPVQ-TIIKFKTLDEVIERAND 187
KR DK +F V + + ++ IFG Q + +E+ +
Sbjct: 129 --ARIMAKRPFDKKS--NSALFRAVGEGNAQLV--AIFGG-QGNTDDY--FEELRDL--- 176
Query: 188 TKYGLASGIVTTNIDTANTFAHAINAGSVDAE-MFTKVLNYIKSGVEQGGKLEAGGKRKG 246
Y +V I + + ++DAE +FT+ LN I +E
Sbjct: 177 --YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPS-------NTP 226
Query: 247 DKGYFIEPTVFSNVTDDFKIAREEIFGPVQT---IIKFKTLD----EVIERANDTKYGLA 299
DK Y + + S + I G +Q ++ K L E+ G +
Sbjct: 227 DKDYLLSIPI-S-----CPL----I-GVIQLAHYVVTAKLLGFTPGELRSYLKGAT-GHS 274
Query: 300 SGIVTTNI----DTANTF-AHAINAGSV--WI--NCYQAV----VPQAPFGGFKESGIGR 346
G+VT D+ +F A +V +I CY+A +P + E+ G
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG- 333
Query: 347 ELGKAALDEYTELKTVTESP---LRSYTSHSIMAAAAASNL-----KRVSLELGGKSPLV 398
SP + + T + +N K+V + LV
Sbjct: 334 ----------------VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI------SLV 371
Query: 399 ICADADVDMAYYYCFVCAGSRTYVQEDIYDTFVKKAVEKAAARKVGD----PFDKSVQQG 454
A V +G + +Y + + KA A D PF ++
Sbjct: 372 NGAKN---------LVVSGPP----QSLYG--LNLTLRKAKAPSGLDQSRIPFS---ERK 413
Query: 455 PQVDAEMFTKVL-----NYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVT-DDFKIA 508
+ F V + + + K + P V+ D ++
Sbjct: 414 LKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVL 471
Query: 509 REEIFGPVQTIIKFKTLDEVI------ERANDTKY--------GLASGIVT-TNIDTANT 553
I + I+ D +I E K G ASG+ T+ + T
Sbjct: 472 SGSI---SERIV-----DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 554 FAHAINAGS-AVVPQAPFGGFKE 575
I AG+ + P + GFK+
Sbjct: 524 GVRVIVAGTLDINPDDDY-GFKQ 545
Score = 47.7 bits (113), Expect = 1e-05
Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 90/285 (31%)
Query: 192 LASGIVTTNIDT-ANTFAHAINAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGY 250
L+ G + + +F A S E F K+L
Sbjct: 11 LSHGSLEHVLLVPTASFFIA----SQLQEQFNKILP------------------------ 42
Query: 251 FIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTA 310
EPT + F A +E P + + KF L V +K G ++ +
Sbjct: 43 --EPT------EGF-AADDEPTTPAELVGKF--LGYVSSLVEPSKVGQFDQVLNLCL--- 88
Query: 311 NTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELGKAALDEYTELKTVTESPLRSY 370
F + G N A+ A ++ + + K + Y + + + P
Sbjct: 89 TEFENCYLEG----NDIHALA--AKLLQENDTTLVKT--KELIKNYITARIMAKRPFDKK 140
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFVCAG---SRTYVQE--D 425
++ ++ A G + L F G + Y +E D
Sbjct: 141 SNSALFRAVGE-----------GNAQL------------VAIF--GGQGNTDDYFEELRD 175
Query: 426 IYDT---FVKKAVEKAAARKVGDPFDKSVQQGPQVDAEMFTKVLN 467
+Y T V ++ +A + + ++FT+ LN
Sbjct: 176 LYQTYHVLVGDLIKFSAET------LSELIRTTLDAEKVFTQGLN 214
Score = 47.0 bits (111), Expect = 2e-05
Identities = 53/332 (15%), Positives = 84/332 (25%), Gaps = 131/332 (39%)
Query: 174 KFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDAEMFTKVLNYIKSGVE 233
K +V RA D + G +I N I+ G + + NY E
Sbjct: 1638 TSKAAQDVWNRA-DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE--NYSAMIFE 1694
Query: 234 QGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERAND 293
D K+ E+IF E+ E +
Sbjct: 1695 T--------------------------IVDGKLKTEKIF------------KEINEHSTS 1716
Query: 294 TKYGLASGIVTTNIDTANT----FAHAINAGSVWINCYQAVVPQ-APFGGFKESGIGREL 348
+ G+++ T T A + + ++P A F G S L
Sbjct: 1717 YTFRSEKGLLS---ATQFTQPALTLMEKAAFEDLKS--KGLIPADATFAGH--S-----L 1764
Query: 349 GKAALDEYTEL--------------------KTVTESPLRSYTSHSIMAAAAASNLKRVS 388
G EY L T+ + R S A N RV+
Sbjct: 1765 G-----EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-NPGRVA 1818
Query: 389 LELGGKSPLVICADAD------VDMAYYYC----FVCAGSRTYVQEDIYDTFVKKAVEKA 438
++ + V++ Y +V AG +A++
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-------------LRALDTV 1865
Query: 439 AARKVGDPFDKSVQQGPQVDAEMFTKVLNYIK 470
T VLN+IK
Sbjct: 1866 ------------------------TNVLNFIK 1873
Score = 39.6 bits (92), Expect = 0.003
Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 55/202 (27%)
Query: 439 AARKVGDPFDKSVQQG---------PQVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDK 489
A ++ + F+K + + P AE+ K L Y+ S VE
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP-----------SKV 77
Query: 490 GYFIEPTVFSNVTDDFKIAREEIF---GPVQTIIKFKTLDEVIERANDTK------YGLA 540
G F + V + +F E + + + L + + Y A
Sbjct: 78 GQFDQ--VLNLCLTEF----ENCYLEGNDIHALA--AKLLQENDTTLVKTKELIKNYITA 129
Query: 541 SGIVTTNIDTANT--FAHAINAGSAVVPQAPFGG-------FKE--------SGIGRELG 583
+ D + A+ G+A + A FGG F+E + +L
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 584 KAALDEYTELKTVTESPLRSYT 605
K + + +EL T + +T
Sbjct: 189 KFSAETLSELIRTTLDAEKVFT 210
Score = 35.0 bits (80), Expect = 0.093
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 38/125 (30%)
Query: 111 DAVMFTKVLNY----IKSGVEQGGKLEAGGKRKGDKGYFIEP-TVFSNVTDDFKIAREEI 165
V +V+ Y ++ V + E G G I P V ++ + + A + +
Sbjct: 1781 SLV---EVVFYRGMTMQVAVPRD---ELGRSNYGMIA--INPGRVAASFSQE---ALQYV 1829
Query: 166 FGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAINAGSVDA-EMFTKV 224
V+ + K +T ++E N N++ AG + A + T V
Sbjct: 1830 ---VERVGK-RT-GWLVEIVNY------------NVENQQY---VA-AGDLRALDTVTNV 1868
Query: 225 LNYIK 229
LN+IK
Sbjct: 1869 LNFIK 1873
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 3e-08
Identities = 62/512 (12%), Positives = 137/512 (26%), Gaps = 150/512 (29%)
Query: 18 LKPAE-----------QTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRK--SCL 64
L+PA+ +T + + Q + +W +C
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-------------FWLNLKNCN 193
Query: 65 SP---------LAYR-SRTYVQEDIYDTFVKKAVEKAAARK----VGDPFDKS------V 104
SP L Y+ + + + +K + A P++ V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 105 QQGPQVDA------VMFT----KVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEP---TVF 151
Q +A ++ T +V +++ + L+ ++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-----HHSMT-LTPDEVKSLL 307
Query: 152 SNVTDDFKIAREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFAHAI 211
D + + L + N + + + + + T + + H
Sbjct: 308 LKYLD----------------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-- 349
Query: 212 NAGSVDAEMFTKVLNYIKSGVEQGGKLEAGGKRKGDKGYFIEPTVFSNVTDDFKI----- 266
V+ + T + I+S + LE RK F +VF I
Sbjct: 350 ----VNCDKLTTI---IESSLNV---LEPAEYRK----MFDRLSVFP---PSAHIPTILL 392
Query: 267 -------AREEIFGPVQTIIKFKTLDEVIERANDTKYGLASGIVTTNIDTANTFA-HAIN 318
+ ++ V + K +L V ++ ++ + S + + N +A H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHK-YSL--VEKQPKESTISIPSIYLELKVKLENEYALHRS- 448
Query: 319 AGSVWINCYQAV--VPQAPFGGFKESG-----IGRELGKAALDEYTELKTVTESPLRS-Y 370
++ Y IG L E L R +
Sbjct: 449 ----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-------FRMVF 497
Query: 371 TSHSIMAAAAASNLKRVSLELGGKSPLVICADADVDMAYYYCFVCAGSRTYVQ--EDIYD 428
+ ++ S + + + +Y ++C Y + I D
Sbjct: 498 LDFRFLEQK----IRHDSTAWNASGSI---LNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 429 TFVKKAVEKAAARKVGDPFDKSVQQGPQVDAE 460
F+ K E + + ++ + E
Sbjct: 551 -FLPKIEENL----ICSKYTDLLRIALMAEDE 577
Score = 47.9 bits (113), Expect = 9e-06
Identities = 84/550 (15%), Positives = 159/550 (28%), Gaps = 153/550 (27%)
Query: 71 SRTYV--------QEDIYDTFVKKAVEKAAARKVGDPFDKSVQQGPQVDAVMFTKVLNYI 122
S T QE++ FV++ + + P K+ Q+ P + M+ + + +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPI-KTEQRQPSMMTRMYIEQRDRL 119
Query: 123 KSGVEQGGKLEAGGKRKGDKGYFIEPTVFS--NVTDDFKIAREEIFGPVQTIIKFKTLDE 180
+ + VF+ NV+ R + + L +
Sbjct: 120 YNDNQ----------------------VFAKYNVS------RLQ---------PYLKLRQ 142
Query: 181 VIERANDTK----YG--------LASGIV-TTNIDTANTFA-HAINAGSVDA-----EMF 221
+ K G +A + + + F +N + ++ EM
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 222 TKVLNYIKSGVEQGG------KLEAGGKRKGDKGYFIEPTVFSN---VTDDFKIARE-EI 271
K+L I KL + + + N V + + A+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNA 261
Query: 272 FGPVQTIIKFKTLDEVIER-ANDTKYGLASGIVTTNI---DTANTFAHAINAG--SVWIN 325
F + K L + R T + S TT+I + T +++
Sbjct: 262 FN-----LSCKIL--LTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 326 C-YQAVVPQA----PFGGFKESGIGREL--GKAALDEYTELKTVTESPLRSYTSHSIMAA 378
C Q + + P + S I + G A D + K V L + S+
Sbjct: 313 CRPQDLPREVLTTNP---RRLSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSL-NV 365
Query: 379 AAASNLKRVSLELGGKSPLVICADADVDMAYYYCFVCAGSRTYVQEDIYDTFVKKA-VEK 437
+ +++ L V A + + + + K + VEK
Sbjct: 366 LEPAEYRKMFDRLS-----VFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 438 -AAARKVGDP---FDKSVQQGPQVDAEMFTKVLN-Y-IKSGVEQGGKLEAGGKRKGDKGY 491
+ P + V+ + + + +++ Y I + + D Y
Sbjct: 420 QPKESTISIPSIYLELKVK--LENEYALHRSIVDHYNIPKTFDSDDLI----PPYLD-QY 472
Query: 492 F----------IEPT----VFSNVTDDF-----KI-----AREEIFGPVQTIIKFKTLDE 527
F IE +F V DF KI A + T+ + K
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 528 VIERANDTKY 537
I ND KY
Sbjct: 533 YICD-NDPKY 541
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.066
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 355 EYTELKTVTESPLRSYTSHSIMAAAAASNLKRVSLE 390
E LK + ++ L+ Y S A A A ++E
Sbjct: 18 EKQALKKL-QASLKLYADDS--APALAIK---ATME 47
Score = 28.0 bits (61), Expect = 6.0
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 46 SVLPGYGPMSAP 57
+ L Y SAP
Sbjct: 27 ASLKLYADDSAP 38
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 31.8 bits (73), Expect = 0.60
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 284 LDEVIERANDTKYGLASG----IVTTNIDTANTFAHAINAGSVWINC 326
+ + I+ + KYG S IVT + +TA F +++ V+ N
Sbjct: 349 VQDAIDHIH--KYG--SSHTDVIVTEDENTAEFFLQHVDSACVFWNA 391
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 31.4 bits (72), Expect = 0.78
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 284 LDEVIERANDTKYGLASG----IVTTNIDTANTFAHAINAGSVWINC 326
+ I+ N + S IVT N A F +++ V+ N
Sbjct: 354 TESAIQHIN--THS--SRHTDAIVTENKANAEKFMKGVDSSGVYWNA 396
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 29.4 bits (67), Expect = 3.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 284 LDEVIERANDTKYGLASG----IVTTNIDTANTFAHAINAGSVWIN 325
+DE IE KY +G I+T N A F I+A +V++N
Sbjct: 336 VDEAIEHIK--KYS--TGHSESILTENYSNAKKFVSEIDAAAVYVN 377
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for
structural genomics, protein structure initiative,
PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium
hafniense}
Length = 189
Score = 28.5 bits (64), Expect = 4.8
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 301 GIVTTNIDTANTFAHAINAGSVWINCYQAVVPQAPFGGFKESGIGRELG 349
GI+ I A A ++ ++ A G + + LG
Sbjct: 114 GILCQTIALA---ATSLGIANIMCG----YTGLAFASGLRAEEFSKRLG 155
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 28.6 bits (63), Expect = 5.8
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 19/125 (15%)
Query: 9 ALAAGCPVLLK----PAEQTPLTALYVAALTQQAGFPDGVISVLPGYGPMSAPYWRKSCL 64
A+ A + E+ P + L + P+ + + G P++AP+
Sbjct: 97 AVRAALLRAMSVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPA- 155
Query: 65 SPLAYRSRTYVQEDIYDTFVKKAVEKAAARKVGDPFDKSVQ------QGPQVDAVMFTKV 118
Y+ DI V A ++ P +V D + K
Sbjct: 156 ------ETVYIASDIDARLV--GFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKT 207
Query: 119 LNYIK 123
L ++
Sbjct: 208 LPCLE 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,418,141
Number of extensions: 611087
Number of successful extensions: 1944
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1641
Number of HSP's successfully gapped: 207
Length of query: 605
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 506
Effective length of database: 3,937,614
Effective search space: 1992432684
Effective search space used: 1992432684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)