BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10990
(486 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1
SV=1
Length = 277
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/283 (55%), Positives = 206/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KG+ P ARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
PY + N KG + G YR ++GTTA+L+ + P+ +E E+++ T
Sbjct: 231 PYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPLELEVLEEIVQT 273
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 138 INAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIA 197
+ A A KG+ P ARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC
Sbjct: 25 LEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNC---------- 74
Query: 198 VTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQ 257
K F++ Y T + + + + L + T +V
Sbjct: 75 --------SKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRML 126
Query: 258 KIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML----- 312
K Y A VT + S +T K+P V + L M
Sbjct: 127 KQMLFRYQGYIGAALVLGGVDVTGPHLYSIYP--HGSTDKLPYVTMGSGSLAAMAVFEDK 184
Query: 313 FR--YQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
FR +EEE KKLV +AIAAG+FNDLGSGSNIDLC
Sbjct: 185 FRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLC 219
>sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1
Length = 277
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 160/286 (55%), Positives = 206/286 (72%), Gaps = 37/286 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KGY PTARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L+TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALL----STQRIPIVVESEQVIHT 483
PY + N KG + G YR ++GT A+L +T I ++ E+ Q + T
Sbjct: 231 PYSVPNKKGTRFGRYRCEKGTNAVLTEKVTTLEIEVLEETVQTMDT 276
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 27/215 (12%)
Query: 138 INAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIA 197
+ A A KGY PTARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC
Sbjct: 25 LEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNC---------- 74
Query: 198 VTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQ 257
K F++ Y T + + + + L + + +V
Sbjct: 75 --------SKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRML 126
Query: 258 KIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML----- 312
K Y A VT + S +T K+P V + L M
Sbjct: 127 KQMLFRYQGYIGAALVLGGVDVTGPHLYSIYP--HGSTDKLPYVTMGSGSLAAMAVFEDK 184
Query: 313 FR--YQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
FR +EEE KKLV +AIAAG+FNDLGSGSNIDLC
Sbjct: 185 FRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLC 219
>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1
Length = 277
Score = 322 bits (824), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 204/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A +GY P RKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L+TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE K LV +AIAAG+FNDLGSGSNIDLCVI KN +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
PY + N KG + G YR ++GTTA+L+ + P+ +E E+ + T
Sbjct: 231 PYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIEVLEETVQT 273
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 138 INAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIA 197
+ A A +GY P RKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC
Sbjct: 25 LEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNC---------- 74
Query: 198 VTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQ 257
K F++ Y T + + + + L + + +V
Sbjct: 75 --------SKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRML 126
Query: 258 KIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML----- 312
K Y A VT + S +T K+P V + L M
Sbjct: 127 KQMLFRYQGYIGAALVLGGVDVTGPHLYSIYP--HGSTDKLPYVTMGSGSLAAMAVFEDK 184
Query: 313 FR--YQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
FR +EEE K LV +AIAAG+FNDLGSGSNIDLC
Sbjct: 185 FRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLC 219
>sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2
Length = 277
Score = 322 bits (824), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 158/283 (55%), Positives = 205/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KGY PTARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAILEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L+TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P M EEE K+LV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
PY + N KG + G YR ++GTTA+L+ + + +E E+ + T
Sbjct: 231 PYSVPNKKGTRFGRYRCEKGTTAVLTEKVTALDIEVLEETVQT 273
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 100/215 (46%), Gaps = 27/215 (12%)
Query: 138 INAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIA 197
+ A A KGY PTARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC
Sbjct: 25 LEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNC---------- 74
Query: 198 VTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQ 257
K F++ Y T + + + + L + + +V
Sbjct: 75 --------SKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRML 126
Query: 258 KIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML----- 312
K Y A VT + S +T K+P V + L M
Sbjct: 127 KQMLFRYQGYIGAALVLGGVDVTGPHLYSIYP--HGSTDKLPYVTMGSGSLAAMAVFEDK 184
Query: 313 FR--YQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
FR +EEE K+LV +AIAAG+FNDLGSGSNIDLC
Sbjct: 185 FRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLC 219
>sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1
Length = 277
Score = 321 bits (823), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 205/283 (72%), Gaps = 34/283 (12%)
Query: 206 QKNAFL----ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHY 261
++NA L A KG+ P ARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+
Sbjct: 20 RRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF 79
Query: 262 MAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECK 321
++ NIYCCGAGTAADT +TT LI+S LEL L TG++PRV+TANR+L+QMLFRYQ
Sbjct: 80 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQ----- 134
Query: 322 KLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTM 381
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TM
Sbjct: 135 ------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTM 170
Query: 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
GSGSLAAM+VFE ++P+M EEE KKLV +AIAAG+FNDLGSGSNIDLCVI K+ +++LR
Sbjct: 171 GSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLR 230
Query: 442 PYEIANVKGKKDGDYRFKRGTTALLSTQRIPIVVES-EQVIHT 483
P+ + N KG + G YR ++GTTA+L+ + P+ +E E+ + T
Sbjct: 231 PFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLEIEVLEETVQT 273
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 138 INAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIA 197
+ A A KG+ P ARKTGTTI G ++ DG+VLGADTRAT+ +VA+KNC
Sbjct: 25 LEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNC---------- 74
Query: 198 VTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQ 257
K F++ Y T + + + + L + T +V
Sbjct: 75 --------SKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRML 126
Query: 258 KIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML----- 312
K Y A VT + S +T K+P V + L M
Sbjct: 127 KQMLFRYQGYIGAALVLGGVDVTGPHLYSIYP--HGSTDKLPYVTMGSGSLAAMAVFEDK 184
Query: 313 FR--YQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
FR +EEE KKLV +AIAAG+FNDLGSGSNIDLC
Sbjct: 185 FRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLC 219
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/282 (52%), Positives = 183/282 (64%), Gaps = 32/282 (11%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++N L KG P+ KTGTTIVG IF DGV+LGADTRAT+ IVA+KNC+KIHYMA N
Sbjct: 20 KRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT+ TD+++SQL L + TG+ RV+TA LL++ LF YQ
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GHVSAALVLGGVD TG HL IYPHGS+DT+PF TMGSGS
Sbjct: 131 --------------------GHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAMSVFE+ +K +T +E KLV +AI +G+FNDLGSGSN+D+CVI K EYLR Y
Sbjct: 171 LAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYME 230
Query: 446 ANVKGK-KDGDYRFKRGTTALLSTQRIPIVVESEQVIHTGTE 486
N + Y F + T LL+ +I ++E +++ E
Sbjct: 231 PNPRTYVSSKGYSFTKKTEVLLT--KITPLLERVEIVEVAGE 270
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 97/216 (44%), Gaps = 31/216 (14%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAV 198
N L KG P+ KTGTTIVG IF DGV+LGADTRAT+ IVA+KNC
Sbjct: 22 NDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNC----------- 70
Query: 199 TVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQK 258
+K ++A Y T V + + + L D +V K
Sbjct: 71 -------EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLK 123
Query: 259 IHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLN--TGKIPRVITANRLLRQMLF--- 313
H + G +AA D+ L + + T +P + L M
Sbjct: 124 KHLFSYQ----GHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEA 179
Query: 314 RYQE----EECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+Y+E +E KLV +AI +G+FNDLGSGSN+D+C
Sbjct: 180 KYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDIC 215
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/280 (52%), Positives = 182/280 (65%), Gaps = 32/280 (11%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
++N L KG P+ KTGTTIVG IF DGV+LGADTRAT+ IVA+KNC+KIHYMA N
Sbjct: 20 KRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPN 79
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT+ TD+++SQL L + TG+ RVITA LL++ LF YQ
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQ--------- 130
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GHVSAALVLGGVD TG HL IYPHGS+DT+PF TMGSGS
Sbjct: 131 --------------------GHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGS 170
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAMSVFE+ +K +T +E KLV ++I +G+FNDLGSGSN+D+CVI K EYLR Y
Sbjct: 171 LAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYME 230
Query: 446 ANVKGK-KDGDYRFKRGTTALLSTQRIPIVVESEQVIHTG 484
N + Y F + T LL+ +I ++E ++ G
Sbjct: 231 PNPRTYVSSKGYSFTKKTEVLLT--KITPLLERVEITEVG 268
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 97/216 (44%), Gaps = 31/216 (14%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAV 198
N L KG P+ KTGTTIVG IF DGV+LGADTRAT+ IVA+KNC
Sbjct: 22 NDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNC----------- 70
Query: 199 TVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQK 258
+K ++A Y T V + + + L D ++ K
Sbjct: 71 -------EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLK 123
Query: 259 IHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLN--TGKIPRVITANRLLRQMLF--- 313
H + G +AA D+ L + + T +P + L M
Sbjct: 124 KHLFSYQ----GHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEA 179
Query: 314 RYQE----EECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+Y+E +E KLV ++I +G+FNDLGSGSN+D+C
Sbjct: 180 KYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDIC 215
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 130/278 (46%), Positives = 179/278 (64%), Gaps = 31/278 (11%)
Query: 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
+Q+N FLA ++ P A TGTTIVG F +GVV+ ADTR+T IVA+KNC K+H ++
Sbjct: 9 YQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISP 68
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
I+C GAGTAADT+ T LI S +EL L T + PRV++A ++L+Q LF+YQ
Sbjct: 69 KIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-------- 120
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
GH+ A L++ GVD TG+HLF+I+ HGS+D + ++GSG
Sbjct: 121 ---------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSG 159
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK-KNGVEYLRPY 443
SLAAM+V ES+WK ++T+EE KL DAI AG++NDLGSGSN+D+CV++ EYLR Y
Sbjct: 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIV-VESEQV 480
NV+ +K Y+F RGTTA+L + I ++ EQV
Sbjct: 220 LTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQEEQV 257
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 35/52 (67%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLL 190
N FLA ++ P A TGTTIVG F +GVV+ ADTR+T IVA+KNC L
Sbjct: 12 NNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKL 63
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1
Length = 273
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 171/273 (62%), Gaps = 31/273 (11%)
Query: 206 QKNAFLAS--KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA 263
Q+NA L G P ARKTGTTI G +F DGV+LGADTRAT+D++VA+K+C+KIH++A
Sbjct: 18 QRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIA 77
Query: 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKL 323
IYCCGAG AAD ++TT ++AS++EL L+TG+ PRV T R+LRQ LFRYQ
Sbjct: 78 PKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQ------- 130
Query: 324 VRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGS 383
GHV A+L++GGVD TG L+ ++PHGS +PF +GS
Sbjct: 131 ----------------------GHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGS 168
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
G AA++V E ++PNMT E + L+ +A+ AG+ DLGSG N+D CVI K G + LR
Sbjct: 169 GQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTL 228
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIVVE 476
K+ G Y F GTTA+L+ P+ +E
Sbjct: 229 SSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLE 261
>sp|O35955|PSB10_MOUSE Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1
Length = 273
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 125/273 (45%), Positives = 171/273 (62%), Gaps = 31/273 (11%)
Query: 206 QKNAFLAS--KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA 263
Q+NA L G P ARKTGTTI G +F DGV+LGADTRAT+D++VA+K+C+KIH++A
Sbjct: 18 QRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIA 77
Query: 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKL 323
IYCCGAG AADT++TT + AS++EL L+TG+ PRV T R+LRQ LFRYQ
Sbjct: 78 PKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQ------- 130
Query: 324 VRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGS 383
GHV A+LV+GGVD G L+ ++PHGS +PF +GS
Sbjct: 131 ----------------------GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGS 168
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
G AA+++ E ++PNMT E ++L+ +AI AG+ +DLGSG N+D CVI G + R
Sbjct: 169 GQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRAL 228
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIVVE 476
++ G YRF GTT +L+ + P+ +E
Sbjct: 229 STPTEPVQRAGRYRFAPGTTPVLTREVRPLTLE 261
>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7
PE=3 SV=1
Length = 266
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/268 (51%), Positives = 179/268 (66%), Gaps = 29/268 (10%)
Query: 206 QKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN 265
+N L G KTGTTIVG ++ GVVLGADTRAT+ IVA+KNC+KIHY+A N
Sbjct: 15 NRNNVLEKTGLRMKGFMKTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADN 74
Query: 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVR 325
IYCCGAGTAADT+ T LI+S+L+L KL+TGK RVITA +L+QMLF+YQ
Sbjct: 75 IYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQ--------- 125
Query: 326 DAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
GH+SAAL+LGG+D G L IYPHGS+D +P+ TMGSGS
Sbjct: 126 --------------------GHISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGS 165
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
LAAM+VFE+ +K +MT+EE LV +AI++G+FNDLGSGSN+D+ VI+ +GV LR Y+
Sbjct: 166 LAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVIEPSGVTVLRNYQT 225
Query: 446 ANVKGKKDGDYRFKRGTTALLSTQRIPI 473
N + ++ Y FK+GTT +L P+
Sbjct: 226 PNERKFRNNPYIFKQGTTPVLKQDIAPL 253
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 94/200 (47%), Gaps = 31/200 (15%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLAS 213
KTGTTIVG ++ GVVLGADTRAT+ IVA+KNC + Y N +
Sbjct: 32 KTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHY------------IADNIYCCG 79
Query: 214 KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273
G + T T I + + G TR I A +++ + + G +
Sbjct: 80 AGTAADTESATA-LISSKLKLHKLSTGKQTRV----ITALTMLKQMLFKYQ-----GHIS 129
Query: 274 AADTQVTTDLIASQLELLKLN--TGKIPRVITANRLLRQMLF---RYQ----EEECKKLV 324
AA D+ L + + T ++P V + L M +Y+ +EE LV
Sbjct: 130 AALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALV 189
Query: 325 RDAIAAGVFNDLGSGSNIDL 344
+AI++G+FNDLGSGSN+D+
Sbjct: 190 AEAISSGIFNDLGSGSNVDV 209
>sp|Q3T0T1|PSB10_BOVIN Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1
Length = 273
Score = 241 bits (615), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 124/273 (45%), Positives = 169/273 (61%), Gaps = 31/273 (11%)
Query: 206 QKNAFL--ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA 263
++NA L A G P ARKTGTTI G +F DGV+LGADTRAT+D++VA+K C+KIH++A
Sbjct: 18 ERNAALQRALPGLRVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIA 77
Query: 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKL 323
IYCCGAG AAD ++TT + AS +EL L+TG+ RV T R+LRQ LFRYQ
Sbjct: 78 PKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQ------- 130
Query: 324 VRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGS 383
G+V A+L++GGVD TG L++++PHGS +PF +GS
Sbjct: 131 ----------------------GYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGS 168
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
G AA++V E ++PNMT E ++L+ +AI AG+ DLGSG N+D CVI G + LR
Sbjct: 169 GQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACVITAAGAKMLRAL 228
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIVVE 476
++ YRF GTT +LS +P+ +E
Sbjct: 229 SSPTKPIERSSQYRFAPGTTPVLSQTVVPLTLE 261
>sp|Q09841|PSB2_SCHPO Probable proteasome subunit beta type-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup1 PE=2 SV=1
Length = 267
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 161/262 (61%), Gaps = 29/262 (11%)
Query: 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
+Q+N L KG+ P A TGTTIVG I D +VLGADTRAT I+A+KNC+K+H ++
Sbjct: 15 YQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISP 74
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
NI+C GAGTAADT+ T +I+S +EL L T + PRV+TA +L+Q LFRYQ
Sbjct: 75 NIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQ-------- 126
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
GH+ A LVLGG D G HLF I HGSSD +P+ +GSG
Sbjct: 127 ---------------------GHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSG 165
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444
SLAA+SV E+ ++P++ E +LV++AI AG+FNDLGSGSN DL VI + R Y
Sbjct: 166 SLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYS 225
Query: 445 IANVKGKKDGDYRFKRGTTALL 466
N + K Y + RGTTA+L
Sbjct: 226 KPNERATKQSKYTYDRGTTAVL 247
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 103/228 (45%), Gaps = 57/228 (25%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAV 198
N L KG+ P A TGTTIVG I D +VLGADTRAT I+A+KNC L LI+
Sbjct: 18 NLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLH---LISP 74
Query: 199 TVSSIGFQKNA---FLAS------KGYSGPTARK----TGTTIV--------GAIFADGV 237
+ G A F+ S + +S T RK T T++ G I A V
Sbjct: 75 NIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLV 134
Query: 238 VLGADTRATDD-TIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296
+ G D + TI A + K+ Y+A G+G+ A V L T
Sbjct: 135 LGGYDCKGPHLFTIAAHGSSDKLPYVA-----LGSGSLAAISV-------------LETK 176
Query: 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
P + + E +LV++AI AG+FNDLGSGSN DL
Sbjct: 177 YQPDL--------------ERHEAMELVKEAIEAGIFNDLGSGSNCDL 210
>sp|Q4KM35|PSB10_RAT Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2
SV=1
Length = 273
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 167/268 (62%), Gaps = 32/268 (11%)
Query: 206 QKNAFLAS--KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA 263
Q+NA L G P ARKTGTTI G +F DGV+LGADTRAT+D++VA+K+C+KIH++A
Sbjct: 18 QRNASLEHVLPGLRVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIA 77
Query: 264 KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKL 323
IYCCGAG AADT++TT + AS++EL L+TG+ PRV T R+LRQ LFRYQ
Sbjct: 78 PKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQ------- 130
Query: 324 VRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGS 383
GHV A+L++GGVD G L++++PHGS +PF +GS
Sbjct: 131 ----------------------GHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGS 168
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
G AA+++ E ++PNMT E ++L+ +AI AG+ DLGSG ++D CVI G + R
Sbjct: 169 GQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSVDACVITAGGAKLQRAL 228
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRI 471
++ G YRF GTT + TQ +
Sbjct: 229 SSPIEPVQRAGQYRFAPGTTP-VQTQEV 255
>sp|Q8SQN7|PSB2_ENCCU Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PUP1 PE=1 SV=1
Length = 227
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 128/231 (55%), Gaps = 30/231 (12%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
KTGTTIVG + GV+L ADTR+T +V++KNC KIH + I CCGAGTAAD
Sbjct: 4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGTAADASRVAR 63
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ + +L L + ++P V ++ Q L +Y
Sbjct: 64 MASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYG-------------------------- 97
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
G + AAL++GG+D G HL+ I+PHGS ++ F ++GSGSL A++ ES ++ M +
Sbjct: 98 ---GGIGAALIVGGIDSEGCHLYEIHPHGSENSALFVSLGSGSLGAIATLESRYRA-MDK 153
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453
+E L DA+ AG+ NDL SGSNID+CVI +GVE+LR Y V D
Sbjct: 154 DEAIDLACDAVKAGILNDLYSGSNIDVCVIDYSGVEFLRNYRRIGVSENTD 204
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
KTGTTIVG + GV+L ADTR+T +V++KNC
Sbjct: 4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNC 37
>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6
PE=1 SV=1
Length = 214
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 28/214 (13%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GT+I+ + GV++GAD+R T +A + KI + + IYCC +G+AADTQ +D +
Sbjct: 14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYV 73
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
LE+ P V TA L + + + ++ + AG+
Sbjct: 74 RYYLEMHTSELCDEPDVKTAASLFQLLCYSN---------KNNLMAGI------------ 112
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+V G G ++NI GS PF GSGS +S +KP MT++E
Sbjct: 113 -------IVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDE 165
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
C + V++++A +F D SG I LC+I KNGVE
Sbjct: 166 CIEFVQNSLALAMFRDGSSGGVIRLCIIDKNGVE 199
>sp|B1L6S7|PSB1_KORCO Proteasome subunit beta 1 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB1 PE=3 SV=1
Length = 206
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 28/224 (12%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GTT VG F +GV++ +D RAT T VA K+ K + +G AD Q + +
Sbjct: 5 GTTTVGVKFKNGVIVASDKRATSGTFVASKSAVKTLKITDYAVATISGLVADGQYLVNNV 64
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
+ +L L+T + V R+L +L RY+
Sbjct: 65 RTIADLYSLDTERPLSVRGIARILAFLLRRYRPY-------------------------- 98
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+ A L++GGVD GAHLFN+ P G+ + GSGS A+SV ES + P+M E
Sbjct: 99 --FLLAQLIVGGVDREGAHLFNVDPFGTLTEEDYLATGSGSPVAISVIESGYSPDMDRES 156
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448
+LV ++ A + D +G ID+ VI GV +L EI+++
Sbjct: 157 ALRLVISSMTAALSRDAATGDGIDVVVIDDRGVNFLSREEISDL 200
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCY-LLSYSDLIAVTVSSI 203
GTT VG F +GV++ +D RAT T VA K+ L +D T+S +
Sbjct: 5 GTTTVGVKFKNGVIVASDKRATSGTFVASKSAVKTLKITDYAVATISGL 53
>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1
Length = 226
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 30/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
+ GTTI + DGV+L AD+R T +A + K+ + NI+CC +G+AADTQ D
Sbjct: 22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVAD 81
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
L+ L + ++ G P V TA L +M ++ +
Sbjct: 82 LLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKN------------------------- 116
Query: 343 DLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+SA L++ G D+ TG +++I GS P GSGS ++N++ NMT
Sbjct: 117 ----MLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMT 172
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+EE + +++A+A + D SG I + ++ K+G+E
Sbjct: 173 QEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGME 209
>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1
Length = 239
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GVVLGAD+R T + +A + K+ + I+CC +G+AADTQ D
Sbjct: 32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVAD 91
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ QL + + P V TA L ++M +RY+E+
Sbjct: 92 AVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRED------------------------ 127
Query: 343 DLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+ A +++ G D G ++++ G PF GSGS ++ ++ MT
Sbjct: 128 -----LMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMT 182
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+EEC + +A+A + D SG I L I + GVE
Sbjct: 183 KEECLQFTANALALAMERDGSSGGVIRLAAIAEPGVE 219
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEK 185
TGTTI+ F GVVLGAD+R T + +A +
Sbjct: 32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANR 63
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 30/213 (14%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GTTI+G + GVVLGAD+R + VA + KI + N+Y C +G+AAD+Q+ +D +
Sbjct: 13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYV 72
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
L + G+ V A L R L Y ++
Sbjct: 73 RYFLHQHTIQLGQPATVKVAANLTR--LLSYNNKD------------------------- 105
Query: 345 CGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+ +++GG D G ++ I P G+ PF GSGS F+ WK MT+E
Sbjct: 106 --RLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQE 163
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
E +KLV A++ + D SG + I K+G
Sbjct: 164 EAEKLVVTAVSLAIARDGASGGVVRTVTINKDG 196
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEK 185
GTTI+G + GVVLGAD+R + VA +
Sbjct: 13 GTTIIGVTYNGGVVLGADSRTSTGMYVANR 42
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GVVLGAD+R T + +A + K+ + I+CC +G+AADTQ D
Sbjct: 32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVAD 91
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ QL + + P V TA L ++M +RY+E+
Sbjct: 92 AVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRED------------------------ 127
Query: 343 DLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+ A +++ G D G ++++ G F GSGS ++ ++ MT
Sbjct: 128 -----LMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT 182
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+EEC + +A+A + D SG I L I ++GVE
Sbjct: 183 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVE 219
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEK 185
TGTTI+ F GVVLGAD+R T + +A +
Sbjct: 32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANR 63
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GVVLGAD+R T + +A + K+ + +I+CC +G+AADTQ D
Sbjct: 31 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVAD 90
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ QL + + P V TA L ++M +RY+E+
Sbjct: 91 AVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRED------------------------ 126
Query: 343 DLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+ A +++ G D G ++++ G F GSGS ++ ++ MT
Sbjct: 127 -----LMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT 181
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
++EC + +A+A + D SG I L I+++GVE
Sbjct: 182 KDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVE 218
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEK 185
TGTTI+ F GVVLGAD+R T + +A +
Sbjct: 31 STGTTIMAVQFDGGVVLGADSRTTTGSYIANR 62
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GVVLGAD+R T + +A + K+ + +I+CC +G+AADTQ D
Sbjct: 31 STGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVAD 90
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ QL + + P V TA L ++M +RY+E+
Sbjct: 91 AVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRED------------------------ 126
Query: 343 DLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+ A +++ G D G ++++ G F GSGS ++ ++ MT
Sbjct: 127 -----LMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT 181
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
++EC + +A+A + D SG I L I+++GVE
Sbjct: 182 KDECLQFTANALALAMERDGSSGGVIRLAAIQESGVE 218
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEK 185
TGTTI+ F GVVLGAD+R T + +A +
Sbjct: 31 STGTTIMAVQFNGGVVLGADSRTTTGSYIANR 62
>sp|P28065|PSB9_HUMAN Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2
Length = 219
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 29/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GVV+G+D+R + V + K+ + + IYC +G+AAD Q D
Sbjct: 18 HTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVAD 77
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ A QLEL + + P V+ A ++R + ++Y+E
Sbjct: 78 MAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE------------------------- 112
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
DL H+ +V G G ++ G PF GSGS ++ +KP M+
Sbjct: 113 DLSAHL---MVAGWDQREGGQVYGTL-GGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSP 168
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439
EEC++ DAIA + D SG I L I GV++
Sbjct: 169 EECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDH 205
>sp|Q2NI68|PSB_METST Proteasome subunit beta OS=Methanosphaera stadtmanae (strain DSM
3091) GN=psmB PE=3 SV=1
Length = 205
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 104/230 (45%), Gaps = 31/230 (13%)
Query: 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQV 279
T GTT VG + DGVVL +TRAT ++VA KN K+ + I AGT + Q
Sbjct: 4 TENMEGTTTVGFVCTDGVVLATETRATMGSLVANKNADKLFQIDDKIGATIAGTVSHAQS 63
Query: 280 TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339
D++ +++ L KL K + DA+A
Sbjct: 64 LMDILKAEISLYKLRNEKDMSI------------------------DALAVLT------- 92
Query: 340 SNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN 399
SNI +L GVD GA L+ + P GS F + GSGS A V E + +
Sbjct: 93 SNILKSRPYYVQTILAGVDKDGAKLYTLDPSGSYIPDTFTSTGSGSPYAFGVLEDRYNED 152
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVK 449
+T EE KK+ AI + + D+ SG+N L VI K+G++ EIA +K
Sbjct: 153 ITTEEGKKIAIKAITSAMERDVYSGNNYRLGVITKDGMKIYTKEEIAQIK 202
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC-YLLSYSDLIAVTVS 201
T GTT VG + DGVVL +TRAT ++VA KN L D I T++
Sbjct: 4 TENMEGTTTVGFVCTDGVVLATETRATMGSLVANKNADKLFQIDDKIGATIA 55
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1
SV=2
Length = 233
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 30/214 (14%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GTTI+G + GVVLGAD+R + VA + KI + N+Y C +G+AAD+QV +D +
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
L + G+ V + L+R + + + N L +G
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLIRMLAYNNK-----------------NMLQTG----- 109
Query: 345 CGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
L++GG D G ++ I G+ PF GSGS F+ WK NMT+E
Sbjct: 110 -------LIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKE 162
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGV 437
E ++LV A++ + D SG + +I GV
Sbjct: 163 EAEQLVVKAVSLAIARDGASGGVVRTVIINSEGV 196
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEK 185
GTTI+G + GVVLGAD+R + VA +
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANR 41
>sp|Q3SZC2|PSB9_BOVIN Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1
Length = 219
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 29/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GVV+G+D+R + V + K+ + ++IYC +G+AAD Q D
Sbjct: 18 HTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIAD 77
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ A QLEL + + P V+ A ++R + ++Y+E
Sbjct: 78 MAAYQLELHGMELEEPPLVLAAANVVRNITYKYRE------------------------- 112
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
DL H+ +V G G ++ G PF GSGS ++ +KP M+
Sbjct: 113 DLSAHL---MVAGWDQREGGQVYGTMS-GMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSP 168
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439
EEC++ +AIA + D SG I L I GV++
Sbjct: 169 EECRRFTTNAIALAMKRDGSSGGVIYLATITGAGVDH 205
>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1
Length = 217
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
KTGTTI+ F GVVLG+D+R + V + K+ + IYC +G+AAD Q +
Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAE 75
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++ QL++ + G+ P+V +A L++ + ++Y+EE
Sbjct: 76 MVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEE------------------------ 111
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
+SA L++ G D G + +G PF GSGS ++ ++ M++
Sbjct: 112 -----LSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSK 166
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
E+C++ V + ++ + D SG L I + G E
Sbjct: 167 EDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKGAE 202
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
KTGTT VG +F GV+L + RAT ++A K +K+H + I AG D Q
Sbjct: 9 KTGTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVR 68
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+I + L ++ G+ V A +L L N
Sbjct: 69 IINVECNLYEIRRGQKISVGAAATILSNYL----------------------------NQ 100
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP-FCTMGSGSLAAMSVFESNWKPNMT 401
+ L++GGVD +G ++++ G + F + GSGSL A V E +KPNMT
Sbjct: 101 NRFSPYYVQLLVGGVDTSGPSVYSVDAAGGATLEENFVSTGSGSLTAYGVLEDRFKPNMT 160
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIA 446
EEE +L A+ A + D SG ++ +I + EYL +IA
Sbjct: 161 EEEAIELAVRALRAAMLRDSASGEGYNVVIITQEKFEYLPEDKIA 205
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLL-SYSDLIAVTVS 201
KTGTT VG +F GV+L + RAT ++A K + + +D I +T++
Sbjct: 9 KTGTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIA 57
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 107/212 (50%), Gaps = 29/212 (13%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GTT VG +DGVVL A+ R + + K+ +K++ + + AG AD Q ++
Sbjct: 6 GTT-VGIRVSDGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIV 64
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
+++ L +L++ P+V T +LL +L+ ++L
Sbjct: 65 EAEMRLYELDSNISPKVWTVAKLLSYILYE------RRLF-------------------- 98
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
A +V+GG+D+ G+HL+++ P G+ + +GSG+ A+S+ ESN+K +M+ +E
Sbjct: 99 --PYYAEIVVGGLDEEGSHLYSLDPIGAIIEDDYVALGSGTQLAISIVESNYKKDMSLDE 156
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
L ++ A + D SG +D+ VI K+G
Sbjct: 157 ALSLALKSVYAAMKRDAASGDGVDVLVIGKSG 188
>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2
Length = 215
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GT+I+ F DGV+LGAD+R T +A + K+ + I+CC +G+AADTQ D++
Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 78
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
LEL G P TA + +++ + ++
Sbjct: 79 QYHLELYTSQYG-TPSTETAASVFKELCYENKD--------------------------- 110
Query: 345 CGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+++A +++ G DD ++ I GS +P+ GSGS + N++ NM++E
Sbjct: 111 --NLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKE 168
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
E ++ +++ + D SG I + V+ GVE L Y
Sbjct: 169 ETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFY 208
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEK 185
GT+I+ F DGV+LGAD+R T +A +
Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANR 48
>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2
SV=1
Length = 217
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
KTGTTI+ F GVVLG+D+R + V + K+ + IYC +G+AAD Q +
Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAE 75
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++ QL++ + G+ P+V +A L++ + ++Y+E+
Sbjct: 76 MVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKED------------------------ 111
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
+SA L++ G D G + +G PF GSGS ++ ++ M++
Sbjct: 112 -----LSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSK 166
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
E+C++ V + ++ + D SG L I + G E
Sbjct: 167 EDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKGAE 202
>sp|Q18GX3|PSB_HALWD Proteasome subunit beta OS=Haloquadratum walsbyi (strain DSM 16790)
GN=psmB PE=3 SV=1
Length = 243
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT-AAD 276
G KTGTT VG DG VL D RA+ +V+ K+ QK+ + I+ GA T A
Sbjct: 42 GDMETKTGTTTVGLKTQDGTVLATDMRASLGRMVSSKDVQKV----EEIHPTGALTIAGS 97
Query: 277 TQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDL 336
LI+S +R + Y+ + + +A++ + N L
Sbjct: 98 VSAAQSLISS---------------------IRAEVRLYEARRGEDMSMEALSTLLGNFL 136
Query: 337 GSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396
SG G +LGGVDD G H+++I P GS + GSGS A+ V E +
Sbjct: 137 RSG------GFFIVQPILGGVDDDGPHIYSIDPAGSIIEEEYTVTGSGSQYALGVLEQQY 190
Query: 397 KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+++ EE K + +I + V DL SG+ I++CV+ ++GVE
Sbjct: 191 NEDLSIEEAKTVAARSIESAVERDLASGNGINVCVVTEDGVE 232
>sp|D4GYZ1|PSB_HALVD Proteasome subunit beta OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmB PE=1 SV=1
Length = 243
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 106/225 (47%), Gaps = 32/225 (14%)
Query: 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT-AAD 276
G KTGTT VG +GVVL D RA+ +V+ K+ QK+ + I+ GA T A
Sbjct: 42 GDKETKTGTTTVGIKTEEGVVLATDMRASMGYMVSSKDVQKV----EEIHPTGALTIAGS 97
Query: 277 TQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDL 336
LI+S LR + Y+ + + A++ V N L
Sbjct: 98 VSAAQSLISS---------------------LRAEVRLYEARRGEDMSMQALSTLVGNFL 136
Query: 337 GSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396
SG G +LGGVD+TG H+++I P GS + GSGS A+ V E +
Sbjct: 137 RSG------GFYVVQPILGGVDETGPHIYSIDPAGSILEEEYTVTGSGSQYALGVLEQEF 190
Query: 397 KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
+ ++ EE K + AI + V DL SG+ I++ V+ ++GV+ R
Sbjct: 191 EDGLSIEEAKGVATKAIRSAVERDLASGNGINIAVVTEDGVDIQR 235
>sp|C3N7K2|PSB2_SULIY Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
T +G DG+VL ++ R + V K +K+H + K + GAG D Q T ++
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFL-MAGAGIYGDLQTLTRIMN 64
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 65 VEIKYYEISTGKPISVHAAAKLLSVILYQYK---------------------------VM 97
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM +
Sbjct: 98 PFISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL ++ K G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3MY41|PSB2_SULIM Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
T +G DG+VL ++ R + V K +K+H + K + GAG D Q T ++
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFL-MAGAGIYGDLQTLTRIMN 64
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 65 VEIKYYEISTGKPISVHAAAKLLSVILYQYK---------------------------VM 97
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM +
Sbjct: 98 PFISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL ++ K G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3MRE5|PSB2_SULIL Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
T +G DG+VL ++ R + V K +K+H + K + GAG D Q T ++
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFL-MAGAGIYGDLQTLTRIMN 64
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 65 VEIKYYEISTGKPISVHAAAKLLSVILYQYK---------------------------VM 97
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM +
Sbjct: 98 PFISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL ++ K G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C4KIR0|PSB2_SULIK Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
T +G DG+VL ++ R + V K +K+H + K + GAG D Q T ++
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFL-MAGAGIYGDLQTLTRIMN 64
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 65 VEIKYYEISTGKPISVHAAAKLLSVILYQYK---------------------------VM 97
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM +
Sbjct: 98 PFISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL ++ K G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|D2PDG6|PSB2_SULID Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.D.8.5
/ Lassen #2) GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
T +G DG+VL ++ R + V K +K+H + K + GAG D Q T ++
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFL-MAGAGIYGDLQTLTRIMN 64
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 65 VEIKYYEISTGKPISVHAAAKLLSVILYQYK---------------------------VM 97
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM +
Sbjct: 98 PFISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL ++ K G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3MZI0|PSB2_SULIA Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.27)
GN=psmB2 PE=3 SV=1
Length = 196
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
T +G DG+VL ++ R + V K +K+H + K + GAG D Q T ++
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFL-MAGAGIYGDLQTLTRIMN 64
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 65 VEIKYYEISTGKPISVHAAAKLLSVILYQYK---------------------------VM 97
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM +
Sbjct: 98 PFISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL ++ K G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3NFX2|PSB1_SULIN Proteasome subunit beta 1 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
T +G DG+VL ++ R + V K +K+H + K + GAG D Q T ++
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFL-MAGAGIYGDLQTLTRIMN 64
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 65 VEIKYYEISTGKPISVHAAAKLLSVILYQYK---------------------------VM 97
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM +
Sbjct: 98 PFISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL ++ K G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|Q980L4|PSB1_SULSO Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286
T VG DG+VL ++ R + V K +K++ + K + GAG D Q T ++
Sbjct: 7 TAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFL-MAGAGIYGDLQTLTRIMNV 65
Query: 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCG 346
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 66 EIKYYEVSTGKPISVHAAAKLLSVILYQYK---------------------------VMP 98
Query: 347 HVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECK 406
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM+ +
Sbjct: 99 FISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMSLDVAT 157
Query: 407 KLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL +I K G
Sbjct: 158 QLITKAIKASIERDITSGDGIDLAIIDKKG 187
>sp|D0KRX1|PSB1_SULS9 Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain 98/2)
GN=psmB1 PE=3 SV=1
Length = 196
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286
T VG DG+VL ++ R + V K +K++ + K + GAG D Q T ++
Sbjct: 7 TAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFL-MAGAGIYGDLQTLTRIMNV 65
Query: 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCG 346
+++ +++TGK V A +LL +L++Y+ +
Sbjct: 66 EIKYYEVSTGKPISVHAAAKLLSVILYQYK---------------------------VMP 98
Query: 347 HVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECK 406
+S L GGVD+ G L+ + P GS + +GSG+ A+ V ES + PNM+ +
Sbjct: 99 FISEIL-FGGVDEKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMSLDVAT 157
Query: 407 KLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
+L+ AI A + D+ SG IDL +I K G
Sbjct: 158 QLITKAIKASIERDITSGDGIDLAIIDKKG 187
>sp|P28077|PSB9_RAT Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1
SV=2
Length = 219
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 29/217 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GVV+G+D+R + V + K+ + + IYC +G+AAD Q D
Sbjct: 18 HTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIAD 77
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ A QLEL L + P V+ A +++ + ++Y+E
Sbjct: 78 MAAYQLELHGLELEEPPLVLAAANIVKNISYKYRE------------------------- 112
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
DL H+ +V G G ++ G PF GSGS ++ +KP MT
Sbjct: 113 DLLAHL---MVAGWDQHEGGQVYGTM-GGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTP 168
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439
EEC++ DAI + D SG I L I +GV++
Sbjct: 169 EECRRFTTDAITLAMNRDGSSGGVIYLVTITADGVDH 205
>sp|Q975D1|PSB2_SULTO Proteasome subunit beta 2 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB2 PE=3 SV=1
Length = 207
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
KTGTT VG DGVVL AD RA+ VA K +K+ Y+A NI AG+ AD Q D
Sbjct: 11 KTGTTTVGIKVKDGVVLAADRRASAGMYVAHKYVRKVLYVAPNIGITTAGSVADLQFIYD 70
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
L+ + L TG P I A+A + N L +
Sbjct: 71 LL-KNIYHYNLITGMRPITI-----------------------KALATYLANMLSFSKYL 106
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
+++GGVD+ L+N+ G + GSGS+ A+ V E ++P+MT
Sbjct: 107 PYI----VQILIGGVDEQ-PRLYNLDYVGDITEEDYTATGSGSVEAIGVIEDEYRPDMTL 161
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+E L R AI + + D +G+ + + I KNG E
Sbjct: 162 DEAADLARRAIFSSIKRDPYTGTGVIVSKITKNGHE 197
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEK 185
KTGTT VG DGVVL AD RA+ VA K
Sbjct: 11 KTGTTTVGIKVKDGVVLAADRRASAGMYVAHK 42
>sp|A7KE01|PB6LA_SALSA Proteasome subunit beta type-6-A like protein OS=Salmo salar
GN=psmb6l-a PE=3 SV=1
Length = 217
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 31/219 (14%)
Query: 224 TGTTIVGAIFADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGTTI+ F GV++G+D+RA+ + V+ K K+ + I+CC AG+ AD Q T
Sbjct: 15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTK 74
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
Q+ + P V A +L+++ + +EE
Sbjct: 75 AAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEE------------------------ 110
Query: 343 DLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+ A + G D G ++ + G + PF GSGS ++ +KP+M+
Sbjct: 111 -----LQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMS 165
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440
+EEC + ++A+A + D SG L VI + GVE++
Sbjct: 166 KEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHV 204
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284
GTT VG I +G+VL + RAT ++A ++ QKI+ + NI AG+ D Q ++
Sbjct: 8 GTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDGQRLARML 67
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
++ +L +L + + LL +L+ Y+ +F
Sbjct: 68 QAESKLFELRRHGPMSINALSMLLSNLLWEYR---------------IF----------- 101
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDT-VPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+++GGVD +G LF++ P G T V F + GSGS A V E +K +M+ E
Sbjct: 102 ----YIQVLVGGVDKSGPKLFSLDPAGGRITEVKFSSTGSGSPLAYGVLEDRYKQDMSVE 157
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+ +L A+ + + D SG+ + CVI VE
Sbjct: 158 QGVELAAKALESAMKRDSASGNGMQFCVITPGKVE 192
>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3
SV=1
Length = 217
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
KTGTTI+ F GVVLG+D+R + V + K+ + IYC +G+AAD Q +
Sbjct: 16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAE 75
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++ QL++ L + P+V +A L++ + ++Y+EE
Sbjct: 76 MVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEE------------------------ 111
Query: 343 DLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+SA L++ G D G +F G PF GSGS ++ ++ MT
Sbjct: 112 -----LSAHLIVAGWDRRDGGQVFATLG-GLLTRQPFAIGGSGSSYVYGFVDAEYRRGMT 165
Query: 402 EEECKKLVRDAIAAGVFNDLGSG 424
+EEC+K V + +A + D SG
Sbjct: 166 KEECQKFVVNTLALAMNRDGSSG 188
>sp|O35522|PSB9_MUSMB Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9
PE=1 SV=1
Length = 219
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
TGTTI+ F GVV+G+D+R + T V + K+ + + I+C +G+AAD Q D+
Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADM 78
Query: 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343
A QLEL L + P V+ A +++ + ++Y+E D
Sbjct: 79 AAYQLELHGLELEEPPLVLAAANVVKNISYKYRE-------------------------D 113
Query: 344 LCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
L H L++ G D G ++ G PF GSGS ++ +KP MT
Sbjct: 114 LLAH----LIVAGWDQREGGQVYGTM-GGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTP 168
Query: 403 EECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439
EEC++ +AI + D SG I L I GV++
Sbjct: 169 EECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDH 205
>sp|B9LTS6|PSB_HALLT Proteasome subunit beta OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=psmB PE=3 SV=1
Length = 243
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 30/224 (13%)
Query: 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADT 277
G KTGTT VG ADGVV+ D RA+ +V+ K+ QK+ + AG+ +
Sbjct: 42 GEGEMKTGTTTVGIKTADGVVMATDMRASLGGMVSSKDVQKVEEVHPRGALTIAGSVSAA 101
Query: 278 QVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLG 337
Q +LI++ L+ Y+ K + +A++ N L
Sbjct: 102 Q---NLIST---------------------LKAETSLYETRRGKDMSMEALSTLTGNLLR 137
Query: 338 SGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK 397
SG+ +LGGVDD G+H+++I G + + GSGS A+ V E +
Sbjct: 138 SGA------FYIVQPILGGVDDEGSHIYSIDALGGTTEEEYTVTGSGSQYALGVLEQEYD 191
Query: 398 PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441
++T +E K + AI + V DL SG+ I++ V+ +GV+ R
Sbjct: 192 DDVTVDEAKTMAAKAIQSAVERDLASGNGINVAVVTDDGVDITR 235
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 149 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
G KTGTT VG ADGVV+ D RA+ +V+ K+
Sbjct: 42 GEGEMKTGTTTVGIKTADGVVMATDMRASLGGMVSSKDV 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,658,225
Number of Sequences: 539616
Number of extensions: 7318451
Number of successful extensions: 18554
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 17661
Number of HSP's gapped (non-prelim): 874
length of query: 486
length of database: 191,569,459
effective HSP length: 121
effective length of query: 365
effective length of database: 126,275,923
effective search space: 46090711895
effective search space used: 46090711895
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)