Query psy10990
Match_columns 486
No_of_seqs 310 out of 1855
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 15:23:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0173|consensus 100.0 6.6E-47 1.4E-51 363.0 23.8 245 137-479 18-262 (271)
2 COG0638 PRE1 20S proteasome, a 100.0 8.9E-39 1.9E-43 314.0 21.3 221 204-450 9-230 (236)
3 cd03750 proteasome_alpha_type_ 100.0 2.5E-38 5.4E-43 308.6 21.3 218 205-449 8-226 (227)
4 PTZ00246 proteasome subunit al 100.0 1.9E-37 4E-42 307.1 21.1 222 205-451 12-240 (253)
5 cd03761 proteasome_beta_type_5 100.0 3.4E-36 7.4E-41 285.5 25.0 187 226-440 1-187 (188)
6 PTZ00488 Proteasome subunit be 100.0 2.8E-36 6E-41 298.2 24.2 210 215-452 29-238 (247)
7 cd03763 proteasome_beta_type_7 100.0 1E-35 2.2E-40 282.1 25.1 189 226-443 1-189 (189)
8 cd03759 proteasome_beta_type_3 100.0 9.3E-36 2E-40 284.0 24.6 189 224-440 2-192 (195)
9 TIGR03633 arc_protsome_A prote 100.0 3.6E-36 7.9E-41 292.5 22.1 213 205-444 10-224 (224)
10 PRK03996 proteasome subunit al 100.0 2.2E-36 4.7E-41 297.2 20.6 219 205-450 17-237 (241)
11 cd03758 proteasome_beta_type_2 100.0 1.4E-35 3.1E-40 282.5 24.9 190 226-441 2-192 (193)
12 cd03760 proteasome_beta_type_4 100.0 2.5E-35 5.4E-40 281.3 24.8 193 224-442 1-197 (197)
13 KOG0176|consensus 100.0 8.4E-37 1.8E-41 284.4 13.4 223 205-449 15-238 (241)
14 TIGR03634 arc_protsome_B prote 100.0 3.5E-35 7.6E-40 277.0 24.1 185 225-437 1-185 (185)
15 cd03764 proteasome_beta_archea 100.0 5E-35 1.1E-39 276.8 24.9 188 226-441 1-188 (188)
16 cd03752 proteasome_alpha_type_ 100.0 1.4E-35 3E-40 286.5 20.8 203 205-432 10-213 (213)
17 cd03757 proteasome_beta_type_1 100.0 3.7E-35 8E-40 283.6 23.7 192 221-440 4-205 (212)
18 cd03751 proteasome_alpha_type_ 100.0 1.3E-35 2.7E-40 287.2 20.0 202 205-432 11-212 (212)
19 cd03762 proteasome_beta_type_6 100.0 1.4E-34 3.1E-39 273.6 24.9 185 226-439 1-186 (188)
20 KOG0174|consensus 100.0 2.3E-35 4.9E-40 274.3 18.4 206 146-449 9-217 (224)
21 cd03749 proteasome_alpha_type_ 100.0 4E-35 8.7E-40 283.2 20.5 201 205-433 8-211 (211)
22 TIGR03690 20S_bact_beta protea 100.0 1.3E-34 2.9E-39 281.1 23.7 202 224-450 1-212 (219)
23 cd03756 proteasome_alpha_arche 100.0 1.4E-34 2.9E-39 279.1 21.0 202 205-433 9-210 (211)
24 cd03755 proteasome_alpha_type_ 100.0 1.2E-34 2.5E-39 278.9 20.1 199 205-432 8-207 (207)
25 cd03753 proteasome_alpha_type_ 100.0 3.7E-34 8E-39 276.4 21.2 206 205-432 8-213 (213)
26 cd03765 proteasome_beta_bacter 100.0 1.7E-33 3.6E-38 276.5 24.6 199 227-446 2-211 (236)
27 cd03754 proteasome_alpha_type_ 100.0 3.9E-34 8.4E-39 277.2 19.4 201 205-432 9-215 (215)
28 cd01912 proteasome_beta protea 100.0 3.9E-33 8.4E-38 263.2 24.7 187 226-440 1-188 (189)
29 cd01911 proteasome_alpha prote 100.0 7.9E-34 1.7E-38 273.2 19.9 201 205-432 8-209 (209)
30 KOG0175|consensus 100.0 1.2E-33 2.7E-38 272.2 16.2 199 153-448 68-266 (285)
31 KOG0178|consensus 100.0 4.7E-33 1E-37 261.6 14.6 222 205-451 12-239 (249)
32 TIGR03691 20S_bact_alpha prote 100.0 5E-32 1.1E-36 265.0 22.2 199 218-449 20-228 (228)
33 PF00227 Proteasome: Proteasom 100.0 7.5E-32 1.6E-36 253.6 20.8 187 222-432 1-190 (190)
34 cd01906 proteasome_protease_Hs 100.0 3.5E-31 7.5E-36 247.4 23.4 181 226-432 1-182 (182)
35 KOG0181|consensus 100.0 3.1E-32 6.8E-37 253.5 11.3 219 205-450 13-231 (233)
36 KOG0185|consensus 100.0 5.3E-31 1.2E-35 251.3 17.0 215 219-459 35-254 (256)
37 KOG0183|consensus 100.0 3.4E-30 7.4E-35 242.9 11.8 217 205-450 11-231 (249)
38 PRK05456 ATP-dependent proteas 100.0 8.7E-29 1.9E-33 232.5 18.4 167 156-431 1-171 (172)
39 KOG0184|consensus 100.0 1.2E-28 2.5E-33 233.7 14.1 216 204-445 14-231 (254)
40 cd01913 protease_HslV Protease 100.0 6.8E-28 1.5E-32 225.7 18.8 164 157-431 1-170 (171)
41 KOG0863|consensus 100.0 4E-28 8.8E-33 231.1 14.4 224 194-450 7-234 (264)
42 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.1E-27 4.5E-32 222.4 18.3 166 157-431 1-170 (171)
43 KOG0177|consensus 100.0 3.4E-27 7.3E-32 219.2 17.9 192 227-444 3-195 (200)
44 KOG0182|consensus 99.9 5E-27 1.1E-31 221.2 17.2 220 205-450 16-240 (246)
45 KOG0179|consensus 99.9 2.5E-25 5.3E-30 209.6 19.0 193 219-439 23-227 (235)
46 KOG0180|consensus 99.9 4.1E-23 9E-28 189.5 17.9 188 223-438 6-195 (204)
47 cd01901 Ntn_hydrolase The Ntn 99.9 8.6E-22 1.9E-26 177.2 20.8 162 226-414 1-163 (164)
48 COG0638 PRE1 20S proteasome, a 99.7 5.6E-18 1.2E-22 166.8 8.5 159 153-343 27-207 (236)
49 PTZ00488 Proteasome subunit be 99.7 1.3E-16 2.8E-21 158.2 7.2 160 152-343 35-214 (247)
50 cd03757 proteasome_beta_type_1 99.6 3.3E-16 7.3E-21 151.5 7.6 168 153-343 5-193 (212)
51 cd03761 proteasome_beta_type_5 99.6 4.1E-16 8.8E-21 148.1 7.7 156 157-344 1-176 (188)
52 cd03762 proteasome_beta_type_6 99.6 9.7E-16 2.1E-20 145.1 8.2 156 157-344 1-176 (188)
53 TIGR03634 arc_protsome_B prote 99.6 1.6E-15 3.6E-20 143.1 8.1 158 156-345 1-178 (185)
54 cd03759 proteasome_beta_type_3 99.6 1.7E-15 3.7E-20 144.7 7.3 160 154-344 1-181 (195)
55 cd03763 proteasome_beta_type_7 99.6 3.1E-15 6.8E-20 142.0 7.3 156 157-344 1-175 (189)
56 cd03752 proteasome_alpha_type_ 99.6 2.5E-15 5.4E-20 145.4 6.7 160 152-343 25-209 (213)
57 cd03760 proteasome_beta_type_4 99.6 3.5E-15 7.6E-20 142.6 6.2 160 155-344 1-184 (197)
58 cd03758 proteasome_beta_type_2 99.6 6.5E-15 1.4E-19 140.5 8.0 156 157-344 2-180 (193)
59 PTZ00246 proteasome subunit al 99.5 5.1E-15 1.1E-19 146.9 6.4 160 152-343 27-211 (253)
60 TIGR03690 20S_bact_beta protea 99.5 1E-14 2.2E-19 141.9 8.1 156 155-341 1-181 (219)
61 cd01911 proteasome_alpha prote 99.5 8.5E-15 1.8E-19 141.1 6.9 160 151-344 22-206 (209)
62 cd03750 proteasome_alpha_type_ 99.5 1.1E-14 2.3E-19 142.4 6.8 160 150-343 21-204 (227)
63 cd03756 proteasome_alpha_arche 99.5 1E-14 2.3E-19 140.8 6.3 158 153-344 25-206 (211)
64 cd03765 proteasome_beta_bacter 99.5 1.3E-14 2.7E-19 143.1 6.6 159 157-345 1-195 (236)
65 cd03764 proteasome_beta_archea 99.5 3E-14 6.6E-19 134.9 7.4 157 157-345 1-177 (188)
66 TIGR03633 arc_protsome_A prote 99.5 2.7E-14 5.9E-19 139.1 6.8 158 152-343 25-206 (224)
67 KOG0173|consensus 99.5 1.3E-14 2.8E-19 140.7 3.6 141 165-345 58-213 (271)
68 cd03753 proteasome_alpha_type_ 99.5 5.9E-14 1.3E-18 135.7 7.4 161 151-345 22-211 (213)
69 cd03749 proteasome_alpha_type_ 99.5 9.2E-14 2E-18 134.5 7.8 162 151-345 22-208 (211)
70 PRK03996 proteasome subunit al 99.4 1.2E-13 2.5E-18 136.1 6.8 158 151-342 31-212 (241)
71 PF00227 Proteasome: Proteasom 99.4 5.1E-14 1.1E-18 132.5 4.0 160 153-344 1-187 (190)
72 cd03755 proteasome_alpha_type_ 99.4 1.9E-13 4.2E-18 131.7 7.3 159 151-345 22-205 (207)
73 cd01912 proteasome_beta protea 99.4 2.5E-13 5.4E-18 128.2 7.2 156 157-344 1-177 (189)
74 cd01906 proteasome_protease_Hs 99.4 8.7E-13 1.9E-17 123.3 8.6 156 157-344 1-179 (182)
75 cd03754 proteasome_alpha_type_ 99.4 6.2E-13 1.3E-17 129.1 7.6 160 154-343 27-211 (215)
76 cd03751 proteasome_alpha_type_ 99.4 3.6E-13 7.8E-18 130.6 5.7 157 150-339 24-204 (212)
77 COG5405 HslV ATP-dependent pro 99.1 7.8E-10 1.7E-14 101.6 13.4 169 224-433 3-176 (178)
78 TIGR03691 20S_bact_alpha prote 99.1 1.5E-10 3.2E-15 113.8 9.1 150 152-341 23-201 (228)
79 KOG0175|consensus 99.1 1.2E-11 2.5E-16 120.6 0.8 151 155-345 80-248 (285)
80 COG3484 Predicted proteasome-t 98.9 1.1E-08 2.5E-13 97.1 12.2 200 226-445 2-211 (255)
81 KOG0179|consensus 98.8 6.4E-09 1.4E-13 99.1 5.2 172 153-345 26-218 (235)
82 KOG0185|consensus 98.6 4.1E-07 8.8E-12 88.3 12.2 61 150-210 35-101 (256)
83 cd01901 Ntn_hydrolase The Ntn 98.4 7.4E-07 1.6E-11 79.9 7.5 123 157-284 1-145 (164)
84 KOG0176|consensus 98.4 5.8E-07 1.2E-11 85.3 6.3 134 150-289 28-190 (241)
85 KOG0174|consensus 98.3 8.8E-08 1.9E-12 90.5 -0.4 123 187-344 57-195 (224)
86 cd01913 protease_HslV Protease 97.8 1.6E-05 3.5E-10 75.1 3.6 105 204-344 59-168 (171)
87 TIGR03692 ATP_dep_HslV ATP-dep 97.6 3.8E-05 8.3E-10 72.6 3.2 112 194-344 52-168 (171)
88 KOG0180|consensus 97.6 0.00022 4.8E-09 66.7 7.8 169 154-359 6-193 (204)
89 KOG0177|consensus 97.4 0.00015 3.3E-09 68.7 4.8 72 158-229 3-84 (200)
90 PRK05456 ATP-dependent proteas 97.2 0.00023 4.9E-09 67.4 3.4 102 205-344 61-169 (172)
91 COG5405 HslV ATP-dependent pro 97.1 0.002 4.3E-08 60.0 7.7 40 154-193 2-41 (178)
92 KOG0178|consensus 96.2 0.0058 1.3E-07 59.1 4.7 126 152-282 27-177 (249)
93 KOG0184|consensus 95.9 0.039 8.5E-07 53.9 8.7 70 152-222 30-109 (254)
94 PF12465 Pr_beta_C: Proteasome 95.7 0.0059 1.3E-07 43.8 1.7 33 448-480 3-36 (38)
95 PF09894 DUF2121: Uncharacteri 95.7 0.61 1.3E-05 45.0 15.8 50 386-435 131-180 (194)
96 KOG0863|consensus 93.3 0.3 6.4E-06 48.2 7.5 126 151-284 27-176 (264)
97 KOG0183|consensus 91.6 0.066 1.4E-06 52.1 0.7 79 151-230 25-113 (249)
98 COG4079 Uncharacterized protei 87.3 16 0.00035 36.7 13.5 50 386-435 132-181 (293)
99 PF08395 7tm_7: 7tm Chemosenso 80.7 1.8 3.9E-05 42.2 3.9 47 70-118 324-370 (372)
100 KOG0181|consensus 75.2 2.2 4.8E-05 41.3 2.5 70 153-223 29-108 (233)
101 KOG3361|consensus 69.6 5.1 0.00011 36.6 3.4 44 365-408 71-114 (157)
102 PF13453 zf-TFIIB: Transcripti 62.3 3.8 8.2E-05 29.5 0.9 36 24-69 2-37 (41)
103 PRK14714 DNA polymerase II lar 38.0 18 0.0004 43.8 1.9 20 24-47 670-689 (1337)
104 KOG4739|consensus 37.3 14 0.00031 36.8 0.8 33 26-58 8-46 (233)
105 COG3484 Predicted proteasome-t 36.6 32 0.00069 33.8 2.9 23 157-179 2-24 (255)
106 PRK04338 N(2),N(2)-dimethylgua 30.9 30 0.00065 36.9 2.0 29 36-66 250-283 (382)
107 COG1579 Zn-ribbon protein, pos 27.4 19 0.00041 36.2 -0.3 35 24-62 200-234 (239)
108 TIGR00308 TRM1 tRNA(guanine-26 25.8 37 0.0008 36.2 1.6 17 50-66 253-274 (374)
109 PF13771 zf-HC5HC2H: PHD-like 25.1 21 0.00046 29.4 -0.3 20 18-45 48-67 (90)
110 PF14828 Amnionless: Amnionles 24.3 98 0.0021 33.8 4.5 14 51-65 228-241 (437)
111 PF08063 PADR1: PADR1 (NUC008) 20.7 35 0.00077 26.4 0.2 12 48-59 13-24 (55)
No 1
>KOG0173|consensus
Probab=100.00 E-value=6.6e-47 Score=363.05 Aligned_cols=245 Identities=64% Similarity=1.039 Sum_probs=234.0
Q ss_pred HHHHHHHcCCCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccC
Q psy10990 137 EINAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGY 216 (486)
Q Consensus 137 ~~n~~l~~~g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~ 216 (486)
+||++|+++|+++|+.++||||||||+|+||||||||||||.|++||+|+|+|||++
T Consensus 18 ~rn~~l~~~g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~i----------------------- 74 (271)
T KOG0173|consen 18 QRNAALLKKGLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFI----------------------- 74 (271)
T ss_pred hhHHHHHhcCCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhc-----------------------
Confidence 589999999999999999999999999999999999999999999999999999883
Q ss_pred CCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 217 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 217 ~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
.++|+|+++|..+|...+.++...++.+|.+..+
T Consensus 75 ----------------------------------------------a~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~ 108 (271)
T KOG0173|consen 75 ----------------------------------------------APNIYCCGAGTAADTEMVTRMISSNLELHRLNTG 108 (271)
T ss_pred ----------------------------------------------ccceEEccCCchhhHHHHHHHHHHHHHHHHhccC
Confidence 3788999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV 376 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~ 376 (486)
+.+.+-.....+++.+++|. ...++.++++|+|..||+||.+-|.|+...-
T Consensus 109 R~~rVv~A~~mlkQ~LFrYq-----------------------------G~IgA~LiiGGvD~TGpHLy~i~phGStd~~ 159 (271)
T KOG0173|consen 109 RKPRVVTALRMLKQHLFRYQ-----------------------------GHIGAALILGGVDPTGPHLYSIHPHGSTDKL 159 (271)
T ss_pred CCCceeeHHHHHHHHHHHhc-----------------------------CcccceeEEccccCCCCceEEEcCCCCcCcc
Confidence 99999888899999998887 4567899999999999999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCCc
Q psy10990 377 PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDY 456 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~~ 456 (486)
+|+++|+|++.++++||..|++||++|||++|+.+|+.+.+.+|..+|+|+++++|++.+++++.++..++....+..+|
T Consensus 160 Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~~~~~r~~~y 239 (271)
T KOG0173|consen 160 PFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPNEKGERTGRY 239 (271)
T ss_pred ceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeeEEEEEEEeeeEE
Q psy10990 457 RFKRGTTALLSTQRIPIVVESEQ 479 (486)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~ 479 (486)
+|++|+|+||+|...|+.+.-+.
T Consensus 240 ~~~~gtT~VL~~~v~~l~~~~~~ 262 (271)
T KOG0173|consen 240 KFKPGTTAVLKEKVYPLLVEVEI 262 (271)
T ss_pred eeCCCceEEEeeeeeeeeeeeeh
Confidence 99999999999999999887543
No 2
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-39 Score=314.04 Aligned_cols=221 Identities=32% Similarity=0.433 Sum_probs=208.4
Q ss_pred hhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 204 GFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 204 ~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
.|+++.+++|.++........|+|+||++++||||+|+|++.+.++++...+.+||++|++|+++++||..+|++.|.++
T Consensus 9 ~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~ 88 (236)
T COG0638 9 IFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRY 88 (236)
T ss_pred eECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHH
Confidence 36778999999998777777789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCce
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAH 363 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~ 363 (486)
++.+++.|.+.++++++++.+++.+++.+|.+++. .|||+++++++|+|+++|+
T Consensus 89 ~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--------------------------~rP~gv~~iiaG~d~~~p~ 142 (236)
T COG0638 89 ARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--------------------------GRPYGVSLLVAGVDDGGPR 142 (236)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--------------------------cccceEEEEEEEEcCCCCe
Confidence 99999999999999999999999999999999931 2899999999999987799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc-CCEEEcCc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK-NGVEYLRP 442 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk-dG~~~l~~ 442 (486)
||++||+|++.+++++|+|+|++.++++||+.|+++|++|||++++.+||+.+++||..++++++|+++++ +|++.+++
T Consensus 143 Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~ 222 (236)
T COG0638 143 LYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDG 222 (236)
T ss_pred EEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999 79999999
Q ss_pred cccccccC
Q psy10990 443 YEIANVKG 450 (486)
Q Consensus 443 ~eI~~~~~ 450 (486)
+++..++.
T Consensus 223 ~~~~~~~~ 230 (236)
T COG0638 223 EEIKKLLD 230 (236)
T ss_pred HHHHHHHH
Confidence 99886654
No 3
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-38 Score=308.57 Aligned_cols=218 Identities=21% Similarity=0.314 Sum_probs=201.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++.++++|++| ..+++++|+|+||++++||||+|+|++.+. .+....+.+||++|++|+++++||..+|++.+.+.+
T Consensus 8 fsp~Grl~Qvey-A~~av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (227)
T cd03750 8 FSPSGKLVQIEY-ALAAVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKA 85 (227)
T ss_pred ECCCCeEhHHHH-HHHHHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHH
Confidence 667899999999 467889999999999999999999999874 455667899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++++|.+++. +| .|||+++++++|||..||+|
T Consensus 86 r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~-------------------~~-----~rP~~v~~li~G~D~~g~~L 141 (227)
T cd03750 86 RKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQS-------------------GG-----VRPFGVSLLIAGWDEGGPYL 141 (227)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----CCChheEEEEEEEeCCCCEE
Confidence 9999999999999999999999999999888721 11 28999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~ 443 (486)
|++||+|++.+++++|+|+|++.++++||++|+++||++||++++++||+.+.+++. +++++++++|+++ |+++++|+
T Consensus 142 y~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ 220 (227)
T cd03750 142 YQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPA 220 (227)
T ss_pred EEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHH
Confidence 999999999999999999999999999999999999999999999999999998875 8899999999996 79999999
Q ss_pred cccccc
Q psy10990 444 EIANVK 449 (486)
Q Consensus 444 eI~~~~ 449 (486)
||++++
T Consensus 221 ei~~~~ 226 (227)
T cd03750 221 EIKDYL 226 (227)
T ss_pred HHHHHh
Confidence 998765
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.9e-37 Score=307.14 Aligned_cols=222 Identities=20% Similarity=0.315 Sum_probs=206.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++++|+|++|+ .++++.|+|+||++++||||+|+|++.+.+++++..+.+||++|++++++++||..+|.+.+.+.+
T Consensus 12 fsp~Grl~QvEYA-~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 90 (253)
T PTZ00246 12 FSPEGRLYQVEYA-LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQC 90 (253)
T ss_pred ECCCCEEhHHHHH-HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHH
Confidence 6678999999994 678899999999999999999999999999888877889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|.+.++.++++..+++.++..++.+++. +| .|||+++++++|||. .||+
T Consensus 91 r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~-------------------~~-----~rP~~v~~li~G~D~~~gp~ 146 (253)
T PTZ00246 91 RLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQF-------------------GG-----LRPFGVSFLFAGYDENLGYQ 146 (253)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccc-------------------cC-----cccCCEEEEEEEEeCCCCcE
Confidence 9999999999999999999999999998887731 11 389999999999995 7899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC------E
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG------V 437 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG------~ 437 (486)
||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++| +
T Consensus 147 Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~ 226 (253)
T PTZ00246 147 LYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQ 226 (253)
T ss_pred EEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 8
Q ss_pred EEcCccccccccCc
Q psy10990 438 EYLRPYEIANVKGK 451 (486)
Q Consensus 438 ~~l~~~eI~~~~~~ 451 (486)
+.++++||++++..
T Consensus 227 ~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 227 KMLSEKEIAELLKK 240 (253)
T ss_pred EECCHHHHHHHHHH
Confidence 99999999998755
No 5
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-36 Score=285.49 Aligned_cols=187 Identities=28% Similarity=0.427 Sum_probs=180.0
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+++++++|.+++ .||++++++||||+.||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~ls~~l~~~~~----------------------------~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~ 132 (188)
T cd03761 81 KLLSNMLYQYKG----------------------------MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGS 132 (188)
T ss_pred HHHHHHHHhcCC----------------------------CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccH
Confidence 999999998882 6899999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
++++++||+.|+++||+|||++++.+||+.+.+||..++++++|++|+++|++..
T Consensus 133 ~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 133 TYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 9999999999999999999999999999999999999999999999999998765
No 6
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2.8e-36 Score=298.24 Aligned_cols=210 Identities=25% Similarity=0.372 Sum_probs=195.5
Q ss_pred cCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhh
Q psy10990 215 GYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLN 294 (486)
Q Consensus 215 e~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~ 294 (486)
+.+.+-.+++|+|+|||+++||||+|+|++.+.+.++...+.+||++|+++++++.||..+|++.+.+.++.+++.|++.
T Consensus 29 ~~~~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~ 108 (247)
T PTZ00488 29 DANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELR 108 (247)
T ss_pred cCCcccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678899999999999999999999998878888889999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCcee
Q psy10990 295 TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSD 374 (486)
Q Consensus 295 ~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~ 374 (486)
++++++++.+++++++++|.++. -|+.+++|+||||.+||+||++||+|++.
T Consensus 109 ~g~~isv~~la~~ls~~l~~~R~----------------------------~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~ 160 (247)
T PTZ00488 109 NGELISVAAASKILANIVWNYKG----------------------------MGLSMGTMICGWDKKGPGLFYVDNDGTRL 160 (247)
T ss_pred HCCCCCHHHHHHHHHHHHHhcCC----------------------------CCeeEEEEEEEEeCCCCEEEEEcCCccee
Confidence 99999999999999999876650 24555589999998899999999999999
Q ss_pred ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcC
Q psy10990 375 TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKK 452 (486)
Q Consensus 375 e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~ 452 (486)
+++++|+|+|+.+++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|++.++++||++++..-
T Consensus 161 ~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~ 238 (247)
T PTZ00488 161 HGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKY 238 (247)
T ss_pred ecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998653
No 7
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-35 Score=282.15 Aligned_cols=189 Identities=73% Similarity=1.190 Sum_probs=181.4
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.+++.|++++++.++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+++++.+|.++ .||++++++||||+.||+||.+||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~ 131 (189)
T cd03763 81 TMLKQHLFRYQ-----------------------------GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGS 131 (189)
T ss_pred HHHHHHHHHcC-----------------------------CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCH
Confidence 99999887655 5999999999999888999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCcc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~ 443 (486)
+.++++||++|+++||++||++++++||+.+.+||+.++++++|++|+++|+++.+|+
T Consensus 132 ~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 132 LAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999998875
No 8
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.3e-36 Score=284.02 Aligned_cols=189 Identities=22% Similarity=0.298 Sum_probs=178.4
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVIT 303 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~ 303 (486)
+|+|+||++++||||+|+|++.+.++++...+.+||++|++|+++++||..+|++.+.+.++.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 58999999999999999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC-eEEE
Q psy10990 304 ANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP-FCTM 381 (486)
Q Consensus 304 la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~-~~Ai 381 (486)
+++++++.+|..+ .+||++++++||||. .+|+||++||+|++.++. ++|+
T Consensus 82 la~~l~~~ly~~r----------------------------~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~ 133 (195)
T cd03759 82 FSSLISSLLYEKR----------------------------FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVS 133 (195)
T ss_pred HHHHHHHHHHHhc----------------------------CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEE
Confidence 9999999986544 179999999999996 569999999999998887 9999
Q ss_pred cCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 382 GSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 382 GsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
|+|++.++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|+++.
T Consensus 134 G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 134 GTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred cccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999998654
No 9
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.6e-36 Score=292.47 Aligned_cols=213 Identities=27% Similarity=0.375 Sum_probs=195.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+||++++||||+|+|++.+.+ +....+.+||++|++++++++||..+|++.+.+.+
T Consensus 10 f~p~Grl~Qieya-~~av~~G~tvigi~~~dgvvlaad~r~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~ 87 (224)
T TIGR03633 10 FSPDGRLYQVEYA-REAVKRGTTAVGIKTKDGVVLAVDKRITSK-LVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRA 87 (224)
T ss_pred ECCCCeEeHHHHH-HHHHHcCCCEEEEEECCEEEEEEeccCCcc-ccCCCccceEEEECCCEEEEEeecHHhHHHHHHHH
Confidence 5678999999995 567899999999999999999999998744 55557889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|++.+++.++++.+++.+++.++.+++. ++ .|||+++++++|+|+.+|+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~-------------------~~-----~rP~~v~~ll~G~d~~~~~L 143 (224)
T TIGR03633 88 RIEAQINRLTYGEPIDVETLAKKICDLKQQYTQH-------------------GG-----VRPFGVALLIAGVDDGGPRL 143 (224)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----ccccceEEEEEEEeCCcCEE
Confidence 9999999999999999999999999999877621 11 28999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~ 442 (486)
|++||.|++.+++++|+|+|++.++++||+.|+++|+++||++++++||+.+.+ |..++++++|++|+++| ++.+++
T Consensus 144 y~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~ 222 (224)
T TIGR03633 144 FETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV 222 (224)
T ss_pred EEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence 999999999999999999999999999999999999999999999999999887 88899999999999988 888777
Q ss_pred cc
Q psy10990 443 YE 444 (486)
Q Consensus 443 ~e 444 (486)
+|
T Consensus 223 ~~ 224 (224)
T TIGR03633 223 EE 224 (224)
T ss_pred CC
Confidence 64
No 10
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.2e-36 Score=297.24 Aligned_cols=219 Identities=27% Similarity=0.361 Sum_probs=201.1
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+++|++|. .+++++|+|+||++++||||+|+|++.+.. +....+.+||++|++++++++||..+|.+.+.+.+
T Consensus 17 fsp~Gr~~Q~eya-~~av~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 94 (241)
T PRK03996 17 FSPDGRLYQVEYA-REAVKRGTTAVGVKTKDGVVLAVDKRITSP-LIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRA 94 (241)
T ss_pred ECCCCeEhHHHHH-HHHHHhCCCEEEEEeCCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHH
Confidence 5678999999995 577899999999999999999999998854 44566889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|++.+++.++++.+++.+++.++.+++. +| .|||++++++||+|..||+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~-------------------~~-----~rP~~~~~ilaG~d~~gp~L 150 (241)
T PRK03996 95 RVEAQINRLTYGEPIGVETLTKKICDHKQQYTQH-------------------GG-----VRPFGVALLIAGVDDGGPRL 150 (241)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----ccchheEEEEEEEeCCcCEE
Confidence 9999999999999999999999999999888721 11 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~ 442 (486)
|.+||+|++.+++++|+|.|++.++++||+.|+++|+++||++++++||+.+.++ ..++++++|++|+++| ++.+++
T Consensus 151 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~ 229 (241)
T PRK03996 151 FETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSV 229 (241)
T ss_pred EEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCH
Confidence 9999999999999999999999999999999999999999999999999999875 5588999999999987 999999
Q ss_pred cccccccC
Q psy10990 443 YEIANVKG 450 (486)
Q Consensus 443 ~eI~~~~~ 450 (486)
+||++++.
T Consensus 230 ~ei~~~~~ 237 (241)
T PRK03996 230 EEIEKYLE 237 (241)
T ss_pred HHHHHHHH
Confidence 99988764
No 11
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-35 Score=282.50 Aligned_cols=190 Identities=25% Similarity=0.340 Sum_probs=179.6
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.+....+.+||++|+++++++.||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999888877888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++++|.+++. .|||+++++++|||+ .||+||++||+|++.+++++|+|+|
T Consensus 82 ~~l~~~~~~~~~~--------------------------~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g 135 (193)
T cd03758 82 NFTRRELAESLRS--------------------------RTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYG 135 (193)
T ss_pred HHHHHHHHHHhhc--------------------------CCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeec
Confidence 9999999876621 169999999999996 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcC
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~ 441 (486)
+++++++||+.|+++||.|||++++.+|++.+.+||..++++++|++|+++|++.++
T Consensus 136 s~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 136 AYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence 999999999999999999999999999999999999999999999999999988653
No 12
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-35 Score=281.34 Aligned_cols=193 Identities=25% Similarity=0.393 Sum_probs=179.0
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH-HhHhhcCCCCcHH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE-LLKLNTGKIPRVI 302 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~-~~~l~~g~~~~v~ 302 (486)
+|+|+||++++||||+|+|++.+.+.+....+.+||++|+++++++.||..+|++.+.++++.++. .+.+.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999887777777889999999999999999999999999999999987 4667899999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEE
Q psy10990 303 TANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTM 381 (486)
Q Consensus 303 ~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~Ai 381 (486)
.+++++++++|.++. + .|||++++|+||||+ .||+||++||+|++.+++++|+
T Consensus 81 ~la~~i~~~~y~~~~-----------------------~---~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~ 134 (197)
T cd03760 81 EIHSYLTRVLYNRRS-----------------------K---MNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVAT 134 (197)
T ss_pred HHHHHHHHHHHHHhh-----------------------c---CCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEE
Confidence 999999998765441 0 289999999999997 7899999999999999999999
Q ss_pred cCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCc
Q psy10990 382 GSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRP 442 (486)
Q Consensus 382 GsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~ 442 (486)
|+|+++++++||+.|++ +||+|||++++.+||+.+.+||..++++++|++|+++|+++..|
T Consensus 135 G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 135 GFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred ccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 99999999999999999 99999999999999999999999999999999999999987665
No 13
>KOG0176|consensus
Probab=100.00 E-value=8.4e-37 Score=284.41 Aligned_cols=223 Identities=22% Similarity=0.343 Sum_probs=203.5
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++| ..++++.|+|.||++.++||++|+++|.++.++.+ .+++||++|++||.|++||..+|++.++++.
T Consensus 15 fSpEGRlfQVEY-aieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p-~sveKi~eid~HIgca~SGl~aDarTlve~a 92 (241)
T KOG0176|consen 15 FSPEGRLFQVEY-AIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEP-SSVEKIVEIDDHIGCAMSGLIADARTLVERA 92 (241)
T ss_pred cCCCceeeehhh-HHHHHhcCCceeeeeccceEEEEEeccccCcccCc-hhhhhheehhhceeeeccccccchHHHHHHH
Confidence 567899999999 57899999999999999999999999999887765 5789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
|.+++.|.+.||++++++.+.+.+++...++.+++.. ..-+.|||||++++||+|..||+|
T Consensus 93 rv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~-------------------~~~msRPFGValliAG~D~~gpqL 153 (241)
T KOG0176|consen 93 RVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDE-------------------EAIMSRPFGVALLIAGHDETGPQL 153 (241)
T ss_pred HHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcch-------------------hhhhcCCcceEEEEeeccCCCceE
Confidence 9999999999999999999999999987777643110 111239999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~ 443 (486)
|+.||+|+|+.+++-|||+|+..+.+.|++.|+++|+++||+.++++.|+.+++... +.+|+++++|+++ +++++.|+
T Consensus 154 ~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl-~~~Nvev~~vt~e~~f~~~t~E 232 (241)
T KOG0176|consen 154 YHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKL-NSNNVEVAVVTPEGEFHIYTPE 232 (241)
T ss_pred EEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhc-CccceEEEEEcccCceEecCHH
Confidence 999999999999999999999999999999999999999999999999999997775 6699999999998 69999999
Q ss_pred cccccc
Q psy10990 444 EIANVK 449 (486)
Q Consensus 444 eI~~~~ 449 (486)
|++.++
T Consensus 233 E~~~~i 238 (241)
T KOG0176|consen 233 EVEQVI 238 (241)
T ss_pred HHHHHH
Confidence 998764
No 14
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.5e-35 Score=276.95 Aligned_cols=185 Identities=36% Similarity=0.523 Sum_probs=177.2
Q ss_pred cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 225 GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 68999999999999999999988888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCc
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
++++++.+|.++ .|||+++++++|||++||+||.+||+|++.+++++++|+|
T Consensus 81 a~~l~~~~~~~~----------------------------~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g 132 (185)
T TIGR03634 81 ATLLSNILNSNR----------------------------FFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSG 132 (185)
T ss_pred HHHHHHHHHhcC----------------------------CCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCc
Confidence 999999887654 2899999999999998999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCE
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGV 437 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~ 437 (486)
+++++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|+
T Consensus 133 ~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 133 SPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999984
No 15
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5e-35 Score=276.79 Aligned_cols=188 Identities=36% Similarity=0.502 Sum_probs=179.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++|||++|+|++.+.+.++...+.+||++|++++++++||..+|++.+.+.++.+++.|.+.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+++++.+|.++ .|||++++++||+|+++|+||.+||+|++.+++++|+|+|+
T Consensus 81 ~~i~~~~~~~~----------------------------~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~ 132 (188)
T cd03764 81 TLLSNILNSSK----------------------------YFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGS 132 (188)
T ss_pred HHHHHHHHhcC----------------------------CCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcH
Confidence 99999988765 28999999999999888999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcC
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~ 441 (486)
++++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|+++++
T Consensus 133 ~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 133 PYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 99999999999999999999999999999999999999999999999999988764
No 16
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-35 Score=286.49 Aligned_cols=203 Identities=19% Similarity=0.269 Sum_probs=189.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+++|++|. .+++++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|.+.+.+.+
T Consensus 10 fsp~Grl~Qveya-~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 88 (213)
T cd03752 10 FSPEGRLYQVEYA-MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYA 88 (213)
T ss_pred ECCCCEEhHHHhH-HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHH
Confidence 6778999999995 568899999999999999999999999888887777899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|++.++++++++.+++.++.+++.+++ .++ .|||++++|++|||+ .||+
T Consensus 89 r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~------------------~~~------~RP~~v~~li~G~D~~~g~~ 144 (213)
T cd03752 89 RLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQ------------------YGG------LRPFGVSFLYAGWDKHYGFQ 144 (213)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhc------------------CCC------cccceeEEEEEEEeCCCCCE
Confidence 999999999999999999999999999888872 111 389999999999995 6899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++.+||+.+.+||..++.+++|++|
T Consensus 145 ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 145 LYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999889999999875
No 17
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-35 Score=283.62 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=180.8
Q ss_pred cccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 221 aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
-++.|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.+.+.++.+++.|++.++++++
T Consensus 4 ~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~ 83 (212)
T cd03757 4 YTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMS 83 (212)
T ss_pred ccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCC
Confidence 35689999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeE
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFC 379 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~ 379 (486)
++.+++++++++|.++ .+||++++|+||||. .+|+||++||+|++.+++++
T Consensus 84 ~~~la~~ls~~ly~~R----------------------------~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~ 135 (212)
T cd03757 84 TEAIAQLLSTILYSRR----------------------------FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYS 135 (212)
T ss_pred HHHHHHHHHHHHHhhc----------------------------CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEE
Confidence 9999999999987544 169999999999996 46999999999999999999
Q ss_pred EEcCchhHHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 380 TMGSGSLAAMSVFESNWK---------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 380 AiGsGs~~a~~~Lek~yk---------~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
|+|+|+++++++||+.|+ ++||++||++++++||+.+.+||+.++++++|++|+++|+++.
T Consensus 136 a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 136 AGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred EEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 999999999999999985 8999999999999999999999999999999999999998655
No 18
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-35 Score=287.18 Aligned_cols=202 Identities=22% Similarity=0.216 Sum_probs=185.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++| +.+++++|+|+||++++||||+|+|++.+...+. ..+.+||++|++|+++++||..+|++.+.+.+
T Consensus 11 fsp~Grl~Qvey-a~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 88 (212)
T cd03751 11 FSPDGRVFQVEY-ANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYE-PGSNKRIFNVDRHIGIAVAGLLADGRHLVSRA 88 (212)
T ss_pred ECCCCcchHHHH-HHHHHhcCCCEEEEEeCCEEEEEEEccccccccC-cchhcceeEecCcEEEEEEEChHhHHHHHHHH
Confidence 667899999999 5788899999999999999999999998764443 45789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++.++++.+++.++++++.+++ +++ .|||+++++++|||+.||+|
T Consensus 89 r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~-------------------~~~-----~rP~~vs~li~G~D~~gp~L 144 (212)
T cd03751 89 REEAENYRDNYGTPIPVKVLADRVAMYMHAYTL-------------------YSS-----VRPFGCSVLLGGYDSDGPQL 144 (212)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcc-------------------CCC-----cCCceEEEEEEEEeCCcCEE
Confidence 999999999999999999999999999988873 111 38999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
|++||+|++.+++++|+|+|+..++++||+.|+++||++||+++++++|+.+++.+...+.++||+++
T Consensus 145 y~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 145 YMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999866677889999874
No 19
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-34 Score=273.63 Aligned_cols=185 Identities=36% Similarity=0.620 Sum_probs=177.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|++|++++||||+|+|++.+.+.+....+.+||++|++++++++||..+|++.+.+.++.+++.|++.+++.++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++++|.++ +||++++++||+|+ .||+||++||+|++.+++++++|+|
T Consensus 81 ~~l~~~~~~~~-----------------------------~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g 131 (188)
T cd03762 81 SLFKNLCYNYK-----------------------------EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSG 131 (188)
T ss_pred HHHHHHHHhcc-----------------------------ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEccc
Confidence 99999998877 78999999999996 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+++++++||+.|+++||++||++++++||+.+.+||+.++++++|++|+++|++.
T Consensus 132 ~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 132 STYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999864
No 20
>KOG0174|consensus
Probab=100.00 E-value=2.3e-35 Score=274.27 Aligned_cols=206 Identities=37% Similarity=0.621 Sum_probs=188.0
Q ss_pred CCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCccccccc
Q psy10990 146 GYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 146 g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~G 225 (486)
|.-+..+++|||||+|+.|+||||||||||+|+|.||+||.++||++
T Consensus 9 ~~~~~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~--------------------------------- 55 (224)
T KOG0174|consen 9 GDLPKEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTP--------------------------------- 55 (224)
T ss_pred ccCcccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhccccee---------------------------------
Confidence 44455678999999999999999999999999999999999999977
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
|.|+++||-||+.+|.|.+.+.++..+..|.+++++++.+...|
T Consensus 56 ------------------------------------itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA 99 (224)
T KOG0174|consen 56 ------------------------------------ITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAA 99 (224)
T ss_pred ------------------------------------ccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 34788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.++++.|++++ -+.+.+++||||+ .|.++|.+...|...+.++..-|+|
T Consensus 100 ~l~r~~~Y~~re-----------------------------~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSG 150 (224)
T KOG0174|consen 100 SLFREICYNYRE-----------------------------MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSG 150 (224)
T ss_pred HHHHHHHHhCHH-----------------------------hhhcceEEeecccccCceEEEeecCceEeecceeeccCC
Confidence 999999999983 1335789999998 6799999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCE--EEcCcccccccc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGV--EYLRPYEIANVK 449 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~--~~l~~~eI~~~~ 449 (486)
+.+++++++..|+++||+||++.++++|+..|++||-.+++-|.+.+|+++|+ ++..++++..+-
T Consensus 151 StfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 151 STFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred ceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999995 555666655443
No 21
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-35 Score=283.17 Aligned_cols=201 Identities=20% Similarity=0.198 Sum_probs=184.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+|||+++||||+|+|++.+..+ ..+.+||++|++++++++||..+|.+.+.+.+
T Consensus 8 fsp~Grl~Qveya-~~av~~G~t~IgIk~~dgVvlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 83 (211)
T cd03749 8 WSPQGRLFQVEYA-MEAVKQGSATVGLKSKTHAVLVALKRATSEL---SSYQKKIFKVDDHIGIAIAGLTADARVLSRYM 83 (211)
T ss_pred ECCCCeEeHHHHH-HHHHhcCCCEEEEEeCCEEEEEEeccCcccc---CCccccEEEeCCCEEEEEEeChHhHHHHHHHH
Confidence 6678999999995 5778899999999999999999999876653 24569999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|+++++++++++.+++.+++++|.+++ .++ .|||+++++++|||+.||+|
T Consensus 84 r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~------------------~~~------~rP~~v~~ii~G~D~~gp~L 139 (211)
T cd03749 84 RQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQ------------------RYG------RRPYGVGLLIAGYDESGPHL 139 (211)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc------------------ccC------CCCceEEEEEEEEcCCCCeE
Confidence 999999999999999999999999999988873 111 28999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHhhhcCC-CCCCceEEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK--PNMTEEECKKLVRDAIAAGVFNDL-GSGSNIDLCVIK 433 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk--~dmS~eEAi~La~kaLk~a~~rD~-~sg~~IeI~iIt 433 (486)
|++||+|++.+++++|+|+|++.++++||++|+ ++||++||+++++++|+.++++|. .+++++||++|+
T Consensus 140 y~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 140 FQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred EEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999999999999999999999999 599999999999999999999886 899999999983
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.3e-34 Score=281.11 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=186.0
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVIT 303 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~ 303 (486)
.|+|+||++++||||+|+|++.+.+.+....+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 38899999999999999999999878887888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCC-ceeecCeEE
Q psy10990 304 ANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHG-SSDTVPFCT 380 (486)
Q Consensus 304 la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsG-s~~e~~~~A 380 (486)
+++.+++++|.++.. + .|||++++++||||. .+|+||++||+| ++.+++++|
T Consensus 81 la~~ls~~~~~~~~~------------------~-------~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a 135 (219)
T TIGR03690 81 KANRLAAMVRGNLPA------------------A-------MQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHA 135 (219)
T ss_pred HHHHHHHHHHhhhhh------------------c-------cCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEE
Confidence 999999999876511 0 289999999999995 569999999999 577788999
Q ss_pred EcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc-------eEEEEEEcCCEEEcCccccccccC
Q psy10990 381 MGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSN-------IDLCVIKKNGVEYLRPYEIANVKG 450 (486)
Q Consensus 381 iGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~-------IeI~iItkdG~~~l~~~eI~~~~~ 450 (486)
+|+|++.++++||+.|+++||.+||++++.+||+.+.++|..+++. ++|++|+++|++.++++||++++.
T Consensus 136 ~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~ 212 (219)
T TIGR03690 136 VGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELAR 212 (219)
T ss_pred EeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999866664 399999999999999999998864
No 23
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-34 Score=279.07 Aligned_cols=202 Identities=26% Similarity=0.404 Sum_probs=186.1
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+||++++||||+|+|++.+.. +....+.+||++|+++++++.||..+|.+.+.+.+
T Consensus 9 fsp~G~l~Q~eya-~~av~~G~t~igik~~dgvvla~d~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l 86 (211)
T cd03756 9 FSPDGRLYQVEYA-REAVKRGTTALGIKCKEGVVLAVDKRITSK-LVEPESIEKIYKIDDHVGAATSGLVADARVLIDRA 86 (211)
T ss_pred ECCCCeEhHHHHH-HHHHHcCCCEEEEEECCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHH
Confidence 5678999999994 677899999999999999999999998744 44556889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.++..|.+.+++.++++.+++.+++.++.+++. ++ .|||+++++++|||+.+|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~-------------------~~-----~rP~~v~~ll~G~D~~~~~l 142 (211)
T cd03756 87 RVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQH-------------------GG-----VRPFGVALLIAGVDDGGPRL 142 (211)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-------------------CC-----eechhEEEEEEEEeCCCCEE
Confidence 9999999999999999999999999998877620 11 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK 433 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt 433 (486)
|.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||+.+.+++. ++++++|++|+
T Consensus 143 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 143 FETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred EEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999988776 89999999986
No 24
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-34 Score=278.92 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=181.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|++|. .+++++|+|+||++++||||+|+|++.+.. +....+.+||++|++|+++++||..+|.+.+.+.+
T Consensus 8 fsp~Gr~~Qveya-~~av~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (207)
T cd03755 8 FSPDGHLFQVEYA-QEAVRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRA 85 (207)
T ss_pred ECCCCeEeHHHHH-HHHHHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHH
Confidence 5678999999994 677899999999999999999999987654 44445789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..|++.+++.++++.+++.+++++|.+++. +. .|||+++++++|||+ .+|+
T Consensus 86 r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~------------------~~------~rP~~vs~ii~G~D~~~~p~ 141 (207)
T cd03755 86 RLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQS------------------GG------VRPFGISTLIVGFDPDGTPR 141 (207)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcc------------------cC------cccceeEEEEEEEeCCCCeE
Confidence 9999999999999999999999999999888731 11 289999999999996 5899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
||++||+|++.+++++|+|+|++.++++||++|+++||++||++++++||..+.+ .+++++||+++
T Consensus 142 Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 142 LYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred EEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999986 57789999875
No 25
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-34 Score=276.42 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=184.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|+||. .+++++|+|+||++++||||+|+|++.+.++ ....+.+||++|++++++++||..+|.+.+.+.+
T Consensus 8 f~p~G~~~Q~eya-~~a~~~G~t~igik~~dgVvlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~ 85 (213)
T cd03753 8 FSPEGRLFQVEYA-IEAIKLGSTAIGIKTKEGVVLAVEKRITSPL-MEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHA 85 (213)
T ss_pred CCCCCeEhHHHHH-HHHHhcCCCEEEEEeCCEEEEEEecccCCcC-cCCCccceEEEEcCCEEEEEecCHHHHHHHHHHH
Confidence 6778999999995 5778999999999999999999999987654 4456789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++.++++.+++.+++.+|++++. .++... ..|||+++++++|||+.||+|
T Consensus 86 r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~------------------~~~~~~-~~rP~~v~~ii~G~D~~gp~L 146 (213)
T cd03753 86 RVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEG------------------DDGKKA-MSRPFGVALLIAGVDENGPQL 146 (213)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCc------------------cccccc-ccccceEEEEEEEEcCCCCEE
Confidence 9999999999999999999999999999887731 100001 138999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
|++||+|++.+++++|+|+|++.++++|++.|+++||++||++++++||+.+.+++ .+++++||++|
T Consensus 147 y~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 147 FHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred EEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999987765 68899999875
No 26
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-33 Score=276.52 Aligned_cols=199 Identities=23% Similarity=0.322 Sum_probs=174.4
Q ss_pred eeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEec----CeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC-CCcH
Q psy10990 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA----KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK-IPRV 301 (486)
Q Consensus 227 TiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~----~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~-~~~v 301 (486)
-+||++++||||+|+|++.+.+++... +.+||++|+ +|+++++||..+|.+.+.+.+|.+++.|++.+|+ .+++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 479999999999999999887766554 689999998 8999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc-cccccceeEEEEEEc-CCCceEEEEccCCceeec---
Q psy10990 302 ITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID-LCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTV--- 376 (486)
Q Consensus 302 ~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd-l~rP~gvslLiaG~D-~~Gp~Ly~iDpsGs~~e~--- 376 (486)
+.+++.++++++.+..+ ..+ ... -.|||+|++|++||| +.||+||++||+|++.++
T Consensus 81 ~~la~~i~~~l~~~~~q----------------~~~---~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~ 141 (236)
T cd03765 81 FDAARYVGETLREVQEQ----------------DRE---ALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPD 141 (236)
T ss_pred HHHHHHHHHHHHHHHhh----------------ccc---ccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCC
Confidence 99999999987654421 000 000 018999999999998 478999999999999998
Q ss_pred -CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccc
Q psy10990 377 -PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIA 446 (486)
Q Consensus 377 -~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~ 446 (486)
+|+|+|. +++++++||++|+++||+|||++++++||+.++.||..++++++|++|+++|++....+.++
T Consensus 142 ~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~ 211 (236)
T cd03765 142 TPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIE 211 (236)
T ss_pred CceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEec
Confidence 5689995 79999999999999999999999999999999999999999999999999998775554444
No 27
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-34 Score=277.16 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=182.3
Q ss_pred hhHhHHhHhccCCCccccc-ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARK-TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~-~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|+++.+++|++|+ .++++ .|+|+||++++||||+|+|++.+.+.+... +.+||++|++++++++||..+|.+.+.+.
T Consensus 9 fsp~Grl~Qveya-~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~-~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~ 86 (215)
T cd03754 9 FSPEGRLYQVEYA-FKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPS-TVTHLFRITDEIGCVMTGMIADSRSQVQR 86 (215)
T ss_pred ECCCCeEeHHHhH-HHHHhcCCccEEEEEeCCEEEEEEeccccccccCCc-ccCceEEEcCCEEEEEEechhhHHHHHHH
Confidence 5678999999995 55655 688999999999999999999877655444 78899999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.++..|++.++++++++.+++.++++++.+++ .+ + .|||+++++++|+|+ +||
T Consensus 87 ~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~------------------~~-~-----~RP~~v~~ii~G~D~~~gp 142 (215)
T cd03754 87 ARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQ------------------HA-Y-----MRPLGVSMILIGIDEELGP 142 (215)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC------------------CC-C-----CcCCeeEEEEEEEeCCCCe
Confidence 9999999999999999999999999999888772 11 1 289999999999996 689
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCC--C--CHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN--M--TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~d--m--S~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+||++||+|++.+++++|+|+|++.++++||++|+++ | |.|||++++++||+.+.+||. .++++||++|
T Consensus 143 ~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 143 QLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred EEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999985 7 999999999999999999996 4899999875
No 28
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-33 Score=263.20 Aligned_cols=187 Identities=43% Similarity=0.623 Sum_probs=178.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+++....+.+|||+|++++++++||..+|++.+.++++.++..|++.+++.++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999888788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++.+|.++ .+||++++++||+|+ ++|+||.+||+|++.+++++|+|++
T Consensus 81 ~~l~~~~~~~~----------------------------~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~ 132 (189)
T cd01912 81 NLLSNILYSYR----------------------------GFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSG 132 (189)
T ss_pred HHHHHHHHhcC----------------------------CCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEccc
Confidence 99999998887 169999999999997 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
+++++++||+.|+++||++||++++.+||+.+.++|..++++++|++|+++|++..
T Consensus 133 ~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 133 SKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999999999999999999999999999999998754
No 29
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=7.9e-34 Score=273.21 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=185.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+++|+||+ .+++.+|+|+||++++|||++|+|++.+.+. ....+.+||++|++++++++||..+|.+.+.+.+
T Consensus 8 f~~~G~~~q~eya-~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l 85 (209)
T cd01911 8 FSPEGRLFQVEYA-LEAVKNGSTAVGIKGKDGVVLAVEKKVTSKL-LDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRA 85 (209)
T ss_pred CCCCCEEeHHHHH-HHHHHcCCCEEEEEECCEEEEEEEecCCccc-cCCcccceEEEecCCeEEEeccCcHhHHHHHHHH
Confidence 6678999999996 4678899999999999999999999988654 4557889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-Cce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~ 363 (486)
+..+..|++.+++.++++.++++++++++.+++. ++ .|||+++++++|+|.+ ||+
T Consensus 86 ~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~-------------------~~-----~rP~~v~~iv~G~d~~~~~~ 141 (209)
T cd01911 86 RVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQY-------------------GG-----VRPFGVSLLIAGYDEEGGPQ 141 (209)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcc-------------------cC-----ccChhheEEEEEEcCCCCcE
Confidence 9999999999999999999999999999877721 11 2899999999999975 899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
||.+||.|++.+++++++|+|+.+++++||+.|+++||++||++++.+||+.+.++|. ++++++|+++
T Consensus 142 Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 142 LYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred EEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999874
No 30
>KOG0175|consensus
Probab=100.00 E-value=1.2e-33 Score=272.18 Aligned_cols=199 Identities=26% Similarity=0.408 Sum_probs=183.5
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEE
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAI 232 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~ 232 (486)
..|||||+|++|++|||+|+|||||+|+||++++++||++|+
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn-------------------------------------- 109 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEIN-------------------------------------- 109 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeec--------------------------------------
Confidence 469999999999999999999999999999999999998852
Q ss_pred ecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHH
Q psy10990 233 FADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML 312 (486)
Q Consensus 233 ~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l 312 (486)
+++.-+++|..+|++..++.+..++.+|++++++.+++...++.+++++
T Consensus 110 -------------------------------~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~ 158 (285)
T KOG0175|consen 110 -------------------------------PYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMV 158 (285)
T ss_pred -------------------------------hhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHH
Confidence 2223356889999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCchhHHHHHH
Q psy10990 313 FRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVF 392 (486)
Q Consensus 313 ~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 392 (486)
++|+ |-| +.+..+++|||+.||.||.+|..|+-..-+-.++|+|+.+|+++|
T Consensus 159 y~Yk--------------------GmG--------LsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVL 210 (285)
T KOG0175|consen 159 YQYK--------------------GMG--------LSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVL 210 (285)
T ss_pred hhcc--------------------Ccc--------hhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEee
Confidence 9998 111 446789999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccc
Q psy10990 393 ESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448 (486)
Q Consensus 393 ek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~ 448 (486)
++.|++|||.|||.+|+++++..|..||..+++-+.++.|+++|+..+++..+.+.
T Consensus 211 DsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L 266 (285)
T KOG0175|consen 211 DSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSEL 266 (285)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHH
Confidence 99999999999999999999999999999999999999999999999998877665
No 31
>KOG0178|consensus
Probab=100.00 E-value=4.7e-33 Score=261.65 Aligned_cols=222 Identities=21% Similarity=0.289 Sum_probs=206.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++| ..+++..+.|+||+..+||||+++.++.+++++......+||++++|+++|+.+|.++|+.+|.+.+
T Consensus 12 FspEGRLyQVEy-Ameais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~a 90 (249)
T KOG0178|consen 12 FSPEGRLYQVEY-AMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYA 90 (249)
T ss_pred cCCCcchHHHHH-HHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHH
Confidence 677999999999 5678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
|-..+.|.+.||++++.+.|+..+++..|.||| .|. .|||||+++.+|||+ .|.+
T Consensus 91 Ri~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQ------------------ygG------~RPFGVSfLYaGwd~~~gyq 146 (249)
T KOG0178|consen 91 RIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQ------------------YGG------KRPFGVSFLYAGWDDRYGYQ 146 (249)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhh------------------ccC------cCCCceeeeeeceecCcceE
Confidence 999999999999999999999999999999994 222 399999999999998 4799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC----EE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT-EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG----VE 438 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS-~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG----~~ 438 (486)
||+.||||++-.|++.++|.++..++++|+..|+.+.. ++||+.+|++.|....+.+.++...+|++.++++. .+
T Consensus 147 Ly~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~ 226 (249)
T KOG0178|consen 147 LYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLK 226 (249)
T ss_pred EEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEE
Confidence 99999999999999999999999999999999998755 99999999999999999998999999999999875 67
Q ss_pred EcCccccccccCc
Q psy10990 439 YLRPYEIANVKGK 451 (486)
Q Consensus 439 ~l~~~eI~~~~~~ 451 (486)
++++.||...+.+
T Consensus 227 i~~~~ev~kll~k 239 (249)
T KOG0178|consen 227 ILKKDEVLKLLEK 239 (249)
T ss_pred ecCHHHHHHHHHH
Confidence 8888898877654
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5e-32 Score=265.02 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=173.1
Q ss_pred CcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC-
Q psy10990 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG- 296 (486)
Q Consensus 218 ~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g- 296 (486)
..++++.|+|+||++++||||+|+|++. .+.+||++|++|++++.||..+|++.+.+..+..++.|.+.++
T Consensus 20 A~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~ 91 (228)
T TIGR03691 20 ARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDR 91 (228)
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4677899999999999999999999862 3578999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCcee
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSD 374 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~ 374 (486)
.+++++.+++.+++.+..+. +++ .|||+|++|++|||+ .||+||++||+|++.
T Consensus 92 ~~~~v~~la~~~tq~~~~~~--------------------~~~-----~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~ 146 (228)
T TIGR03691 92 RDVTGRGLANAYAQTLGTIF--------------------TEQ-----QKPYEVEICVAEVGETPDQDQLYRITFDGSIV 146 (228)
T ss_pred CCccHHHHHHHHHhhccccc--------------------ccc-----cCcceEEEEEEEEcCCCCCCEEEEECCCCCce
Confidence 67888777664444332211 000 399999999999984 689999999999999
Q ss_pred ecC-eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh--hcCCCCCCceEEEEEEcCC----EEEcCcccccc
Q psy10990 375 TVP-FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGV--FNDLGSGSNIDLCVIKKNG----VEYLRPYEIAN 447 (486)
Q Consensus 375 e~~-~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~--~rD~~sg~~IeI~iItkdG----~~~l~~~eI~~ 447 (486)
+++ ++|+|+|++.++++||++|+++||++||++++++||+.+. +++..++.++||+++++++ ++.++++||++
T Consensus 147 ~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~ 226 (228)
T TIGR03691 147 DERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALER 226 (228)
T ss_pred eccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHh
Confidence 976 8999999999999999999999999999999999999995 4667889999999999764 99999999987
Q ss_pred cc
Q psy10990 448 VK 449 (486)
Q Consensus 448 ~~ 449 (486)
++
T Consensus 227 ~l 228 (228)
T TIGR03691 227 LL 228 (228)
T ss_pred hC
Confidence 64
No 33
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=7.5e-32 Score=253.57 Aligned_cols=187 Identities=29% Similarity=0.418 Sum_probs=172.0
Q ss_pred ccccceeeEEEecCeEEEEEeCCCCcCeeeecCC-cceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKN-CQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 222 V~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s-~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
|++|+|+||++++|||++|+|++.+.+......+ .+||++|+++++++.||..+|.+.+.+.++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999988776664444 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeec-Ce
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTV-PF 378 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~-~~ 378 (486)
++.+++.++++++.++.. ++ .||++++++++|+|+.+ |+||.+||+|++.++ ++
T Consensus 81 ~~~l~~~~~~~~~~~~~~-------------------~~-----~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~ 136 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYR-------------------SG-----RRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRF 136 (190)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------TT-----TSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSE
T ss_pred chhhhhhhHHHHhhhccc-------------------cc-----ccCccccceeeeeccccccceeeecccccccccccc
Confidence 998888888888776632 00 28999999999999765 999999999999999 69
Q ss_pred EEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 379 CTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+|+|+|++.++++||+.|+++||++||++++++||+.+.++|..++++++|++|
T Consensus 137 ~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 137 AAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp EEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred ccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999999999999999999999999999986
No 34
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=3.5e-31 Score=247.44 Aligned_cols=181 Identities=36% Similarity=0.529 Sum_probs=171.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++|||++|+|++.+.+......+.+|||+|++++++++||..+|.+.+.+.++.++..|.+.+++.++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999988887678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.+++++|.++++ .|||+++++++|+|. .+|+||.+||+|++.+++++|+|+|
T Consensus 81 ~~l~~~~~~~~~~--------------------------~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g 134 (182)
T cd01906 81 KLLANLLYEYTQS--------------------------LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSG 134 (182)
T ss_pred HHHHHHHHHhCCC--------------------------ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCC
Confidence 9999999988821 289999999999997 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++.+++|++|
T Consensus 135 ~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 135 SQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred cHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999999999999999999999999989999999875
No 35
>KOG0181|consensus
Probab=99.97 E-value=3.1e-32 Score=253.46 Aligned_cols=219 Identities=21% Similarity=0.317 Sum_probs=201.7
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|-|++|. ..+|..|.+.+|++-.||||+|+.++..+.+. ...+..|+..|.+||.|+.||..+|+++|.+..
T Consensus 13 FSpsGKL~QieyA-L~Av~~G~~SvGi~A~nGvVlatekk~~s~L~-~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~ 90 (233)
T KOG0181|consen 13 FSPSGKLVQIEYA-LTAVVNGQTSVGIKAANGVVLATEKKDVSPLV-DEESVRKVEKITPHIGCVYSGMGPDYRVLVHKS 90 (233)
T ss_pred EcCCCceehHHHH-HHHHhCCCCceeeeecCceEEEeccCCCCccc-hhhhhhhHhhccCCcceEEecCCCceeehhhHH
Confidence 5677888888884 67889999999999999999999987665544 456789999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+..++.|..-|++++++..+...++..||+||| ||| .||||++++++|||..+|.|
T Consensus 91 rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTq--------------------sgG----vrPFGvslliaG~~~~~p~L 146 (233)
T KOG0181|consen 91 RKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQ--------------------SGG----VRPFGVSLLIAGWDEGGPLL 146 (233)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--------------------cCC----ccccceEEEEeecCCCceeE
Confidence 999999999999999999999999999999995 333 39999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
|++||+|+++.|+++|+|.+...++.+||+.|.++|.+++++..|+..|++..+-.. +.++|||+++..++++.+.+.|
T Consensus 147 yQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~F~~lt~~e 225 (233)
T KOG0181|consen 147 YQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFRRLTPAE 225 (233)
T ss_pred EEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCceeecCHHH
Confidence 999999999999999999999999999999999999999999999999999887664 7799999999999999999999
Q ss_pred cccccC
Q psy10990 445 IANVKG 450 (486)
Q Consensus 445 I~~~~~ 450 (486)
|+.+++
T Consensus 226 I~d~l~ 231 (233)
T KOG0181|consen 226 IEDYLA 231 (233)
T ss_pred HHHHHh
Confidence 998875
No 36
>KOG0185|consensus
Probab=99.97 E-value=5.3e-31 Score=251.32 Aligned_cols=215 Identities=20% Similarity=0.347 Sum_probs=200.5
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH-hhcCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK-LNTGK 297 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~-l~~g~ 297 (486)
..+..+|+++||++|++|||+|+|+..+++++....+++|++++++|+.+++||..+|+|.+.+.+.....+.. +..|.
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~ 114 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQ 114 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999998887776554 56678
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCceeec
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSDTV 376 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs~~e~ 376 (486)
.+.++.+++++...||..+.+ +.|++..+++||+|++ .|.|..+|..|..++.
T Consensus 115 ~l~Pk~ih~yltrvlY~rRsK--------------------------mnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~ 168 (256)
T KOG0185|consen 115 SLGPKAIHSYLTRVLYARRSK--------------------------MNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYES 168 (256)
T ss_pred ccChHHHHHHHHHHHHHhhhc--------------------------cCchhhheeEeeecCCCCeeEEEEeeccccccC
Confidence 999999999999999988732 2699999999999994 5999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCC
Q psy10990 377 PFCTMGSGSLAAMSVFESNWK---PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk---~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~ 453 (486)
+.+|+|.|++.+.++|++.|. ++++.+||.+++.+||+...+||+.+.+++++++|+++|+++..|+.|++.|++++
T Consensus 169 ~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~fa~ 248 (256)
T KOG0185|consen 169 PVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWDFAE 248 (256)
T ss_pred chhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecchhhh
Confidence 999999999999999999997 57999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q psy10990 454 GDYRFK 459 (486)
Q Consensus 454 ~~~~~~ 459 (486)
..+.|.
T Consensus 249 ~~~gy~ 254 (256)
T KOG0185|consen 249 TIKGYE 254 (256)
T ss_pred hccccc
Confidence 998883
No 37
>KOG0183|consensus
Probab=99.96 E-value=3.4e-30 Score=242.94 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=197.4
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++...|+|++| .+++|..|+|.+|++.+++|+++++++....+.. .....||..+++|+++++||..+|++.|+++.
T Consensus 11 FSPDGhL~QVEY-AqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~-~r~~rkI~~ld~hV~mafaGl~aDArilinrA 88 (249)
T KOG0183|consen 11 FSPDGHLFQVEY-AQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQD-ERTVRKISMLDDHVVMAFAGLTADARILINRA 88 (249)
T ss_pred ECCCCCEEeeHh-HHHHHhcCceEEEeccCceEEEEEeecchhhhhh-hhhhhhheeecceeeEEecCCCccceeehhhH
Confidence 677889999999 4789999999999999999999999887665543 34589999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~ 363 (486)
|-+++.|++....+++++.+..+++.+.|+||+ |+| .||||++.+++|+|..| |+
T Consensus 89 rvecqShrlt~edpvtveyitRyiA~~kQrYTq--------------------s~g----rRPFGvs~Li~GfD~~g~p~ 144 (249)
T KOG0183|consen 89 RVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQ--------------------SNG----RRPFGVSTLIGGFDPDGTPR 144 (249)
T ss_pred hHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhc--------------------cCC----cccccceEEEEeeCCCCCee
Confidence 999999999999999999999999999999994 222 39999999999999976 99
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN--MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYL 440 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~d--mS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l 440 (486)
||++||+|.|.+|++.|||.+++.+..+||++|.++ .|..++++|++++|..+...+ ++|+++++++.++ .+.+
T Consensus 145 lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~l 221 (249)
T KOG0183|consen 145 LYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKML 221 (249)
T ss_pred eEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceeec
Confidence 999999999999999999999999999999999876 788999999999999988654 5899999999988 9999
Q ss_pred CccccccccC
Q psy10990 441 RPYEIANVKG 450 (486)
Q Consensus 441 ~~~eI~~~~~ 450 (486)
+.++|+.+..
T Consensus 222 ~~~~I~~~v~ 231 (249)
T KOG0183|consen 222 ESEEIDDIVK 231 (249)
T ss_pred CHHHHHHHHH
Confidence 9999987653
No 38
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.96 E-value=8.7e-29 Score=232.45 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=140.2
Q ss_pred cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecC
Q psy10990 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFAD 235 (486)
Q Consensus 156 GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kd 235 (486)
||||||++|+||||||||+|+|.|.+|++++++||++
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~------------------------------------------- 37 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRR------------------------------------------- 37 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEE-------------------------------------------
Confidence 7999999999999999999999999999999988876
Q ss_pred eEEEEEeCCCCcCeeeecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHH
Q psy10990 236 GVVLGADTRATDDTIVAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFR 314 (486)
Q Consensus 236 GVVlAaDtr~t~g~li~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~ 314 (486)
| +++++++.||+.+|.+.|.+.++.+++.|+... .+..++.++.+. .
T Consensus 38 --------------------------i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~~a~l~~~l~-~ 85 (172)
T PRK05456 38 --------------------------LYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRAAVELAKDWR-T 85 (172)
T ss_pred --------------------------eCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHHHHHHHHHHH-h
Confidence 3 578889999999999999999999999887322 233333332221 0
Q ss_pred hhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec--CeEEEcCchhHHHHHH
Q psy10990 315 YQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV--PFCTMGSGSLAAMSVF 392 (486)
Q Consensus 315 ~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~L 392 (486)
+. +.+|+.+.++++ |. |+||.+||.|+..+. ++.++|+|+.++.++|
T Consensus 86 ~~---------------------------~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~l 134 (172)
T PRK05456 86 DR---------------------------YLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAA 134 (172)
T ss_pred cc---------------------------CCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHH
Confidence 00 115777888884 33 699999999999766 7999999999999999
Q ss_pred HhcCC-CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEE
Q psy10990 393 ESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCV 431 (486)
Q Consensus 393 ek~yk-~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~i 431 (486)
+++|+ ++| ||++++++|++.+.+||..++++|++-.
T Consensus 135 d~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 135 RALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999 999 9999999999999999999999998854
No 39
>KOG0184|consensus
Probab=99.96 E-value=1.2e-28 Score=233.69 Aligned_cols=216 Identities=21% Similarity=0.210 Sum_probs=192.7
Q ss_pred hhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 204 GFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 204 ~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
.|++..+++|++| +.++|.+++|+|||+++||||+++++-.+++++.+. +..||+.|+.|+.++.+|..+|.+.+.++
T Consensus 14 ~fSpdGrvfQveY-A~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~-sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ 91 (254)
T KOG0184|consen 14 TFSPDGRVFQVEY-AQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPG-SNERIFSVDRHIGMAVAGLIPDGRHLVNR 91 (254)
T ss_pred eeCCCCceehHHH-HHHHHhcCCcEEEEecCCeEEEEEeeeecccccccC-CCCceEeecccccEEEeccccchHHHHHH
Confidence 3667889999999 578999999999999999999999999998888765 56899999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCce
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAH 363 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~ 363 (486)
.+.++..|+-.|+.+++...++.++.++.+.+|. || + .||||++.++++||++||+
T Consensus 92 ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tl-------------------y~--~---vRpfG~~~~~~~yd~~g~~ 147 (254)
T KOG0184|consen 92 ARDEAASWRKNYGDPIPGKHLADRVADYVHAFTL-------------------YS--S---VRPFGASTILGSYDDEGPQ 147 (254)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHhhhheeeh-------------------hh--c---cccccceEEEEEEeCCCce
Confidence 9999999999999999999999999999999983 22 2 3999999999999999999
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc--CCEEEcC
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK--NGVEYLR 441 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk--dG~~~l~ 441 (486)
||.++|+|.++.++++|+|.|.|.|++.||+.--.+|+.+|+++.+.+.|..+.+......-.+|+.++.. +|.+..-
T Consensus 148 LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~v 227 (254)
T KOG0184|consen 148 LYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKV 227 (254)
T ss_pred EEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccC
Confidence 99999999999999999999999999999999888999999999999999988766555556688888875 3555554
Q ss_pred cccc
Q psy10990 442 PYEI 445 (486)
Q Consensus 442 ~~eI 445 (486)
|.||
T Consensus 228 p~el 231 (254)
T KOG0184|consen 228 PSEL 231 (254)
T ss_pred cHHH
Confidence 5454
No 40
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=6.8e-28 Score=225.71 Aligned_cols=164 Identities=20% Similarity=0.178 Sum_probs=137.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCe
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADG 236 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdG 236 (486)
|||+|++|+||||||||+|+|.|.+|++++++||+++
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i------------------------------------------- 37 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRL------------------------------------------- 37 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEe-------------------------------------------
Confidence 8999999999999999999999999999999988773
Q ss_pred EEEEEeCCCCcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHH-HH
Q psy10990 237 VVLGADTRATDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML-FR 314 (486)
Q Consensus 237 VVlAaDtr~t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l-~~ 314 (486)
++ +++++.||+.+|.+.|.+.++.+++.|+++.++ .+++.++.++ ++
T Consensus 38 --------------------------~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~~~~ 86 (171)
T cd01913 38 --------------------------YNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWRTDR 86 (171)
T ss_pred --------------------------CCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHHhcc
Confidence 35 788899999999999999999999999887663 2233333321 11
Q ss_pred hhHHHHHHHHHHHHHhccccccCCCCCCccccccc-eeEEEEEEcCCCceEEEEccCCceeecC--eEEEcCchhHHHHH
Q psy10990 315 YQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVS-AALVLGGVDDTGAHLFNIYPHGSSDTVP--FCTMGSGSLAAMSV 391 (486)
Q Consensus 315 ~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~g-vslLiaG~D~~Gp~Ly~iDpsGs~~e~~--~~AiGsGs~~a~~~ 391 (486)
+ +|+. +.++++++| +||.+||.|+..+.+ +.++|+|+.+++++
T Consensus 87 ~------------------------------~~~l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ 132 (171)
T cd01913 87 Y------------------------------LRRLEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAA 132 (171)
T ss_pred C------------------------------cCceEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHH
Confidence 1 3443 555655443 999999999999984 99999999999999
Q ss_pred HHhcCCCC-CCHHHHHHHHHHHHHHhhhcCCCCCCceEEEE
Q psy10990 392 FESNWKPN-MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCV 431 (486)
Q Consensus 392 Lek~yk~d-mS~eEAi~La~kaLk~a~~rD~~sg~~IeI~i 431 (486)
||..|+++ || +.++|.+|++.|++||..++++|++-.
T Consensus 133 ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 133 ARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 99999995 99 669999999999999999999998754
No 41
>KOG0863|consensus
Probab=99.95 E-value=4e-28 Score=231.07 Aligned_cols=224 Identities=22% Similarity=0.224 Sum_probs=198.3
Q ss_pred cceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCc
Q psy10990 194 DLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273 (486)
Q Consensus 194 d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs 273 (486)
|.+..++++ +.+|||++| ..++++.|++.||++.+.-.|+++-++..+.+ ....+||++|++|+.++.+|.
T Consensus 7 d~d~t~wsP-----qGrl~QvEy-a~EavkqGsatVGLks~thaVLvAl~r~~seL---ss~QkKi~~iD~h~g~siAGL 77 (264)
T KOG0863|consen 7 DNDVTTWSP-----QGRLHQVEY-AMEAVKQGSATVGLKSRTHAVLVALKRAQSEL---SSHQKKIFKIDDHIGISIAGL 77 (264)
T ss_pred cCceeEECC-----cceehHHHH-HHHHHhcccceEeecccceEEEeeeccchhHH---HHhhheeEecccccceEEecc
Confidence 445555554 789999999 57899999999999999988888777665432 345799999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEE
Q psy10990 274 AADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALV 353 (486)
Q Consensus 274 ~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslL 353 (486)
++|.++|.++++.++..++..|++.+++..+...+.+.+|..|+. +. -|||||.++
T Consensus 78 t~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~------------------yg------rRpYGVGll 133 (264)
T KOG0863|consen 78 TADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQR------------------YG------RRPYGVGLL 133 (264)
T ss_pred CcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhh------------------hC------CccccceEE
Confidence 999999999999999999999999999999999999999888842 22 299999999
Q ss_pred EEEEcCCCceEEEEccCCceeecCeEEEcCchhHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHhhhcC-CCCCCceEEE
Q psy10990 354 LGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK--PNMTEEECKKLVRDAIAAGVFND-LGSGSNIDLC 430 (486)
Q Consensus 354 iaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk--~dmS~eEAi~La~kaLk~a~~rD-~~sg~~IeI~ 430 (486)
++|||+.||+||+++|+|++.++++.+||+.+|.+.++||++.. ++++.||.+..++.||+.....| .+++.|++|+
T Consensus 134 v~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~ 213 (264)
T KOG0863|consen 134 VAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIA 213 (264)
T ss_pred EEeecCCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEE
Confidence 99999999999999999999999999999999999999999876 59999999999999999998744 6789999999
Q ss_pred EEEcCC-EEEcCccccccccC
Q psy10990 431 VIKKNG-VEYLRPYEIANVKG 450 (486)
Q Consensus 431 iItkdG-~~~l~~~eI~~~~~ 450 (486)
+|.+|. +.+++..++.++..
T Consensus 214 Ivgkd~pf~~~d~~~~~k~~~ 234 (264)
T KOG0863|consen 214 IVGKDEPFTILDQKDVAKYVD 234 (264)
T ss_pred EEeCCCceEeecHHHHHHHHH
Confidence 999985 99999988886643
No 42
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.95 E-value=2.1e-27 Score=222.44 Aligned_cols=166 Identities=19% Similarity=0.177 Sum_probs=136.7
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCe
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADG 236 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdG 236 (486)
|||+|++|+||||||||+|+|+|.+|++++++||++++
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~------------------------------------------ 38 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLY------------------------------------------ 38 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeC------------------------------------------
Confidence 89999999999999999999999999999998887631
Q ss_pred EEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHH-HHh
Q psy10990 237 VVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQML-FRY 315 (486)
Q Consensus 237 VVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l-~~~ 315 (486)
+++++++.||+.+|.+.|.+.++.+++.|+++. .+.+++.++++. +++
T Consensus 39 --------------------------~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~~~~~ 87 (171)
T TIGR03692 39 --------------------------NGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWRTDRY 87 (171)
T ss_pred --------------------------CCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHhhccc
Confidence 377888999999999999999999999887643 244445544431 111
Q ss_pred hHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec--CeEEEcCchhHHHHHHH
Q psy10990 316 QEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV--PFCTMGSGSLAAMSVFE 393 (486)
Q Consensus 316 t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~Le 393 (486)
. +.+.+.++++++ ++||.+||.|++.+. ++.++|+|+.++.++||
T Consensus 88 ~-----------------------------~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld 134 (171)
T TIGR03692 88 L-----------------------------RRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAAR 134 (171)
T ss_pred c-----------------------------cccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHH
Confidence 1 223355565544 399999999999996 69999999999999999
Q ss_pred hcC-CCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEE
Q psy10990 394 SNW-KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCV 431 (486)
Q Consensus 394 k~y-k~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~i 431 (486)
..| +++|+ |++++.++++.|++||..++++|++-.
T Consensus 135 ~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 135 ALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999 57787 999999999999999999999998864
No 43
>KOG0177|consensus
Probab=99.95 E-value=3.4e-27 Score=219.20 Aligned_cols=192 Identities=24% Similarity=0.341 Sum_probs=179.7
Q ss_pred eeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHH
Q psy10990 227 TIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANR 306 (486)
Q Consensus 227 TiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~ 306 (486)
+++||++.|.|++|+|+....+.+....+.+|++++++++.++.+|..+|.-.+.++++.++++|++++|.+++++.+++
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 68999999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCch
Q psy10990 307 LLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 307 ~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.++.+..+-. | .+||.|++++||+|. .||.||++|..|+..+.++.+.|.|+
T Consensus 83 FtR~~La~~LR--------------------s------r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~ 136 (200)
T KOG0177|consen 83 FTRRELAESLR--------------------S------RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGS 136 (200)
T ss_pred HHHHHHHHHHh--------------------c------CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchh
Confidence 99987754431 1 179999999999998 57999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
.++.++|+++|+||||.|||+++..+|+.++..|-..+..++.+.+|+|||++.++...
T Consensus 137 ~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~i~ 195 (200)
T KOG0177|consen 137 YFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDDIN 195 (200)
T ss_pred hhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccccc
Confidence 99999999999999999999999999999999998888899999999999999987654
No 44
>KOG0182|consensus
Probab=99.95 E-value=5e-27 Score=221.24 Aligned_cols=220 Identities=18% Similarity=0.210 Sum_probs=200.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|+....-..|-|.++++.+|++|+++.++.+.+++++ ..+..+|+|..+++|+.+|..+|.+...++.
T Consensus 16 FspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~-~tvt~~f~itk~ig~v~tG~~aDar~~v~ra 94 (246)
T KOG0182|consen 16 FSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDS-STVTHLFRITKKIGCVITGMIADARSQVQRA 94 (246)
T ss_pred ECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCccccccc-ccceeEEEeeccceEEEecCCcchHHHHHHH
Confidence 677899999999876555569999999999999999999988877655 4578899999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.++..+++.||.+|+++.|++.+++..|.|+|..+ +||+||.+++.|+|+ .||.
T Consensus 95 r~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~------------------------mRplg~~~~~i~~D~E~gP~ 150 (246)
T KOG0182|consen 95 RYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAA------------------------MRPLGVAATLIGVDEERGPS 150 (246)
T ss_pred HHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhh------------------------hcccceeEEEEEeccccCcc
Confidence 999999999999999999999999999999996422 399999999999998 5799
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPN--MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEY 439 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~d--mS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~ 439 (486)
+|.+||.|.+..++++|.|...+.+..+||++|+++ +|.+|++++++.||..++..|. ..+.+||++++++. +++
T Consensus 151 vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Df-k~se~EVgvv~~~~p~f~~ 229 (246)
T KOG0182|consen 151 VYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDF-KSSELEVGVVTVDNPEFRI 229 (246)
T ss_pred eEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhccc-CCcceEEEEEEcCCcceee
Confidence 999999999999999999999999999999999987 7899999999999999998886 45789999999886 999
Q ss_pred cCccccccccC
Q psy10990 440 LRPYEIANVKG 450 (486)
Q Consensus 440 l~~~eI~~~~~ 450 (486)
|+.+||++-+.
T Consensus 230 Ls~~eie~hL~ 240 (246)
T KOG0182|consen 230 LSAEEIEEHLQ 240 (246)
T ss_pred ccHHHHHHHHH
Confidence 99999987653
No 45
>KOG0179|consensus
Probab=99.94 E-value=2.5e-25 Score=209.57 Aligned_cols=193 Identities=24% Similarity=0.371 Sum_probs=180.9
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
.+-..+|+|+++|.+.|..|+|+|+|.+.+..+..++.+|||+++|++.++.||-.+|...|...++..+..|+..+++.
T Consensus 23 ~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ 102 (235)
T KOG0179|consen 23 SPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKK 102 (235)
T ss_pred CccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhccccc
Confidence 45567899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeecC
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVP 377 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~~ 377 (486)
|++...|+.|+..+|..+ | -||.+..+++|+|+.| +.+|+.||-|++....
T Consensus 103 ms~~s~A~lls~~LY~kR----------------F------------FPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~ 154 (235)
T KOG0179|consen 103 MSIHSAAQLLSTILYSKR----------------F------------FPYYVFNILAGIDEEGKGAVYSYDPVGSYERVT 154 (235)
T ss_pred ccHHHHHHHHHHHHhhcc----------------c------------ccceeeeeeecccccCceeEEeecCCcceeeee
Confidence 999999999999999877 1 6999999999999954 9999999999999999
Q ss_pred eEEEcCchhHHHHHHHhcCC-----------CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 378 FCTMGSGSLAAMSVFESNWK-----------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk-----------~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+.|.|+++.+++++|++... +.||+|+|+.|+.+++..|.+||+.++++++|+++++||++.
T Consensus 155 ~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 155 CRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred eecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 99999999999999998642 358999999999999999999999999999999999999754
No 46
>KOG0180|consensus
Probab=99.91 E-value=4.1e-23 Score=189.47 Aligned_cols=188 Identities=21% Similarity=0.271 Sum_probs=177.6
Q ss_pred cccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHH
Q psy10990 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVI 302 (486)
Q Consensus 223 ~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~ 302 (486)
.+|++++++.++++|.+|+|.|....+.....+.+|||+++++++++.+|...|.+.+.++++....+|+++.++.+-++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 47899999999999999999999888877888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCcee-ecCeEE
Q psy10990 303 TANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSD-TVPFCT 380 (486)
Q Consensus 303 ~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs~~-e~~~~A 380 (486)
.+++.++..+|+.+. .||-+..++||.|++ .|++...|..|... ..+|++
T Consensus 86 ~~s~mvS~~lYekRf----------------------------gpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVv 137 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRF----------------------------GPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVV 137 (204)
T ss_pred HHHHHHHHHHHHhhc----------------------------CCcccceeEeccCCCCCeeEeecccccCcCccCCeEE
Confidence 999999999998881 699999999999984 59999999999976 567999
Q ss_pred EcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEE
Q psy10990 381 MGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438 (486)
Q Consensus 381 iGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~ 438 (486)
.|.++...++++|..|+|||..||..+.+.++|..+.+||+.+|+...+.+|+||++.
T Consensus 138 sGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 138 SGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred ecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 9999999999999999999999999999999999999999999999999999999754
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.89 E-value=8.6e-22 Score=177.17 Aligned_cols=162 Identities=31% Similarity=0.362 Sum_probs=153.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|++|+++++|+++|+|++.+.+.........|++.++++++++.+|..+|.+.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 47899999999999999999888877677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec-CeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV-PFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~-~~~AiGsG 384 (486)
+.+++.++.+++ .+|++++++++|+|+++|+||.+||+|++.+. +++++|.+
T Consensus 81 ~~~~~~~~~~~~---------------------------~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~ 133 (164)
T cd01901 81 KELAKLLQVYTQ---------------------------GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSR 133 (164)
T ss_pred HHHHHHHHHhcC---------------------------CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCC
Confidence 999999988771 18999999999999988999999999999999 99999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIA 414 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk 414 (486)
+..+.++|++.|+++|+.+|+++++.+||+
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 134 SQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999985
No 48
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.6e-18 Score=166.81 Aligned_cols=159 Identities=24% Similarity=0.266 Sum_probs=126.4
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~~~~aV 222 (486)
..+|||+||++++||||||||+|+|+|.++++++++||+++| ++.++.|| +.+.+ ++++|+..++.+..+
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 357899999999999999999999999999999999999986 77777777 33433 466888999998888
Q ss_pred cccceeeEEEe---c--------CeEEEEEeC-CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAIF---A--------DGVVLGADT-RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 223 ~~GtTiIgI~~---k--------dGVVlAaDt-r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
..-++.++-.. . ..+|.|.|. .+....+++.++. ......++|||+......|++.++.+
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~-----~~~~~~a~Gsgs~~a~~~Le~~y~~~--- 178 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSY-----NEYKATAIGSGSQFAYGFLEKEYRED--- 178 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCce-----eecCEEEEcCCcHHHHHHHHhhccCC---
Confidence 88888775221 1 235556677 3345666666655 35678999999999999999966433
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ .|||.+|+.+|+.+++.||.+||++++
T Consensus 179 --------m~----------------~eeai~la~~al~~a~~rd~~s~~~~~ 207 (236)
T COG0638 179 --------LS----------------LEEAIELAVKALRAAIERDAASGGGIE 207 (236)
T ss_pred --------CC----------------HHHHHHHHHHHHHHHHhccccCCCCeE
Confidence 32 899999999999999999999997653
No 49
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.65 E-value=1.3e-16 Score=158.23 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=122.1
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hh----hhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IG----FQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~----l~~nl~L~~le~~~~~a 221 (486)
++++|||+|||+++||||||+|+|++.|.++.+++++||++++ ++.++.+| +. ++.++.+|+.+++.+..
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5789999999999999999999999999999999999999986 55555555 22 24457788888888777
Q ss_pred ccccceeeEEEec---------CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 222 RKTGTTIVGAIFA---------DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 222 V~~GtTiIgI~~k---------dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
+...+..++-... ..++.|.|... ....+++.++. ...+..+.|+|+......|++.++.
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~-----~~~~~~a~G~gs~~~~~~Le~~~k~----- 184 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTR-----LHGNMFSCGSGSTYAYGVLDAGFKW----- 184 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcce-----eecCCEEEccCHHHHHHHHHhcCcC-----
Confidence 7777666652221 23666688543 34455555554 3356778999999988888885533
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.+||.+|+.+|+..++.||..||++++
T Consensus 185 ------dm----------------s~eEai~l~~kal~~~~~Rd~~sg~~~e 214 (247)
T PTZ00488 185 ------DL----------------NDEEAQDLGRRAIYHATFRDAYSGGAIN 214 (247)
T ss_pred ------CC----------------CHHHHHHHHHHHHHHHHHhccccCCCeE
Confidence 23 3899999999999999999999997754
No 50
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.63 E-value=3.3e-16 Score=151.54 Aligned_cols=168 Identities=12% Similarity=0.129 Sum_probs=122.6
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~aV 222 (486)
.+.|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| + .++.++.+|+..++.+..+
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 567999999999999999999999999999999999999986 56666666 2 2244577888888877777
Q ss_pred cccceeeEEEe---------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 223 KTGTTIVGAIF---------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 223 ~~GtTiIgI~~---------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
...+..++-.. ...++.|.|... ..+.+++.++. ...+..+.|+|+......|++.++.+-.
T Consensus 85 ~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~~~~~-- 157 (212)
T cd03757 85 EAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSY-----ERETYSAGGSASSLIQPLLDNQVGRKNQ-- 157 (212)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCe-----eecCEEEEeecHHHHHHHHHHHHHhhcc--
Confidence 66666554211 224566688532 34556666654 3467889999999999998886532110
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+..+...+ +.+||.+|+.+|+..++.||..||+++.
T Consensus 158 ~~~~~~~m----------------s~eea~~l~~~~l~~~~~rd~~sg~~i~ 193 (212)
T cd03757 158 NNVERTPL----------------SLEEAVSLVKDAFTSAAERDIYTGDSLE 193 (212)
T ss_pred CcCCCCCC----------------CHHHHHHHHHHHHHHHHHhCcccCCCEE
Confidence 00011233 4899999999999999999999997754
No 51
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.63 E-value=4.1e-16 Score=148.12 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=119.8
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|++.|.++.+++++||++++ +..++.+| ..+..++.+|+..++.+.++..-+
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 55555555 223456778888888888777777
Q ss_pred eeeEEE---------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAI---------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~---------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++.. +...++.|.|.. +....+++.++. ...+..+.|+|+......|++.++.
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~~---------- 145 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTR-----LKGDLFSVGSGSTYAYGVLDSGYRY---------- 145 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceE-----EEcCeEEEcccHHHHHHHHHhcCCC----------
Confidence 776521 123566678854 334455555554 3467888999999988888885432
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
++ +.|||.+|+.+|+..++.||..||+++.+
T Consensus 146 -~~----------------s~eea~~l~~~~l~~~~~rd~~sg~~~~v 176 (188)
T cd03761 146 -DL----------------SVEEAYDLARRAIYHATHRDAYSGGNVNL 176 (188)
T ss_pred -CC----------------CHHHHHHHHHHHHHHHHHhcccCCCCeEE
Confidence 33 38999999999999999999999977653
No 52
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.61 E-value=9.7e-16 Score=145.09 Aligned_cols=156 Identities=24% Similarity=0.219 Sum_probs=116.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||++|++++||||||+|+|+++|.++.+++++||++++ ++.++.+| +.+.+++.+|+..++.+..+...+
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888787777666655
Q ss_pred eeeEE--------EecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGA--------IFADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI--------~~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++. -+...++.|.|+ . +..+.+.+.++. ...++.+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~-----~~~~~~~~G~g~~~~~~~Le~~~~----------- 144 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGML-----IRQPFAIGGSGSTYIYGYVDANYK----------- 144 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCE-----EecCEEEEcccHHHHHHHHHhcCC-----------
Confidence 55541 112345666785 3 234445555544 234677778999888888888553
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.+ +.+||.+|+++|+..++.||..+|+++++
T Consensus 145 ~~~----------------s~~ea~~l~~~al~~~~~rd~~~~~~~~i 176 (188)
T cd03762 145 PGM----------------TLEECIKFVKNALSLAMSRDGSSGGVIRL 176 (188)
T ss_pred CCC----------------CHHHHHHHHHHHHHHHHHhccccCCCEEE
Confidence 233 38999999999999999999999987654
No 53
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.60 E-value=1.6e-15 Score=143.05 Aligned_cols=158 Identities=30% Similarity=0.338 Sum_probs=118.2
Q ss_pred cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccccccc
Q psy10990 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 156 GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~G 225 (486)
|||+||++++||||||+|+|+|.|.++..++++||++++ ++.++.+| +.+ ..++..|+..++.+.++...
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 899999999999999999999999999999999999987 56666666 222 33566777777777776666
Q ss_pred ceeeEEE---------ecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 226 TTIVGAI---------FADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 226 tTiIgI~---------~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
+..++.. +...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~---------- 145 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGI-----IEDDYTATGSGSPVAYGVLEDEYR---------- 145 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCe-----EECCEEEEcCcHHHHHHHHHhcCC----------
Confidence 6655422 1234666788543 34455565554 334788899999888888887543
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
++++ .+||.+|+++++..++.||..+|++++++
T Consensus 146 -~~~s----------------~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ 178 (185)
T TIGR03634 146 -EDMS----------------VEEAKKLAVRAIKSAIERDVASGNGIDVA 178 (185)
T ss_pred -CCCC----------------HHHHHHHHHHHHHHHHHhcccCCCCEEEE
Confidence 2333 88999999999999999999999776543
No 54
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.59 E-value=1.7e-15 Score=144.66 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=117.5
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~ 223 (486)
.+|||+||++++||||||||+|++.+.++.+++++||++++ ++.++.+| +.+ ..++.+|+..++.+..+.
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 36999999999999999999999999999999999999986 56666665 222 345678888888777777
Q ss_pred ccceeeEE-Ee--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH
Q psy10990 224 TGTTIVGA-IF--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK 292 (486)
Q Consensus 224 ~GtTiIgI-~~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~ 292 (486)
..+..++. .+ ...++.|.|... ..+.+++.++..+ .+...+.|+|+......|++.++.
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~----~~~~~a~G~g~~~~~~~Le~~~~~------ 150 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSI----PSDFVVSGTASEQLYGMCESLWRP------ 150 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccc----cCCEEEEcccHHHHHHHHHhccCC------
Confidence 66666652 11 124566688532 3444444444311 133678899998888888875432
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 293 LNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 293 l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
++ +.+||.+|+.+|+..++.||..+|+++.+
T Consensus 151 -----~~----------------s~~ea~~l~~~~l~~~~~rd~~~~~~~~i 181 (195)
T cd03759 151 -----DM----------------EPDELFETISQALLSAVDRDALSGWGAVV 181 (195)
T ss_pred -----CC----------------CHHHHHHHHHHHHHHHHhhCcccCCceEE
Confidence 33 38999999999999999999999977654
No 55
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.57 E-value=3.1e-15 Score=141.97 Aligned_cols=156 Identities=39% Similarity=0.474 Sum_probs=115.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|++.|.++.+++++||++++ +..++.+| +.+ ..++..|+.+++.+..+..-+
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 55566665 222 345677887787777666655
Q ss_pred eeeEE-E--ec-----CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGA-I--FA-----DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI-~--~k-----dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
+.++. . +. ..++.|.|... ..+.+++.++. ...+..+.|+|+......|++.++ .
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~-----~~~~~~a~G~~~~~~~~~L~~~~~-----------~ 144 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGST-----DKLPFVTMGSGSLAAMSVLEDRYK-----------P 144 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCE-----EecCEEEEcCCHHHHHHHHHhhcC-----------C
Confidence 55542 1 11 34555678543 34455555554 346788899999888888887553 2
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
++ +.+||.+|+++++..+..||..+|+++++
T Consensus 145 ~l----------------s~~ea~~l~~~~l~~~~~rd~~~~~~~~v 175 (189)
T cd03763 145 DM----------------TEEEAKKLVCEAIEAGIFNDLGSGSNVDL 175 (189)
T ss_pred CC----------------CHHHHHHHHHHHHHHHHHhcCcCCCceEE
Confidence 33 38899999999999999999999877654
No 56
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.57 E-value=2.5e-15 Score=145.38 Aligned_cols=160 Identities=16% Similarity=0.055 Sum_probs=120.9
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
++++|+|+||++++||||||+|+|++.+.++.+++++||++++ ++.++.+| ..++.++.+|+++++.+.+
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4678999999999999999999999999999999999999986 66666665 2334567788888888777
Q ss_pred ccccceeeEEE-------------ecCeEEEEEeCC-C-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------FADGVVLGADTR-A-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 222 V~~GtTiIgI~-------------~kdGVVlAaDtr-~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+..-+..++.. ....++.+.|.. . ..+.+++.++..+ .+..+.|+|+......|++.++.
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~-----~~~~a~G~gs~~~~~~Le~~y~~ 179 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSG-----WKATAIGNNNQAAQSLLKQDYKD 179 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeee-----eeEEEECCCcHHHHHHHHHhccC
Confidence 77666554321 123466678853 2 3555666665533 46788999999988888885533
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.+||.+|+.+|+..++.||..+|.++.
T Consensus 180 -----------~m----------------s~eea~~l~~~al~~~~~r~~~~~~~~e 209 (213)
T cd03752 180 -----------DM----------------TLEEALALAVKVLSKTMDSTKLTSEKLE 209 (213)
T ss_pred -----------CC----------------CHHHHHHHHHHHHHHHHhccCCCCCcEE
Confidence 33 3899999999999999988877776554
No 57
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.56 E-value=3.5e-15 Score=142.62 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=113.9
Q ss_pred ccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhh----HhHHh-HhccCCCccccc
Q psy10990 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQ----KNAFL-ASKGYSGPTARK 223 (486)
Q Consensus 155 tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~----~nl~L-~~le~~~~~aV~ 223 (486)
||||+||++++||||||||+|++.|.++.+++++||++++ ++.++.+| +.+. .++.+ ++..++.+..+.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 7999999999999999999999999999999999999986 55555555 3333 33333 334566566655
Q ss_pred ccceeeEEE-e----------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 224 TGTTIVGAI-F----------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 224 ~GtTiIgI~-~----------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
..+..++.. + ...++.+.|+ . +..+.+++.++. ...+..+.|+|+......|++.++..
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~~~--- 152 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTA-----YEDPHVATGFGAYLALPLLREAWEKK--- 152 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccE-----EECCEeEEccHHHHHHHHHHhhcCCC---
Confidence 555544321 1 1245566885 2 345566666654 34678888999988888888754320
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++ +.+||.+|+.+|+..++.||..+|+++.+
T Consensus 153 ------~~m----------------s~eea~~l~~~~l~~~~~rd~~~~~~~~i 184 (197)
T cd03760 153 ------PDL----------------TEEEARALIEECMKVLYYRDARSINKYQI 184 (197)
T ss_pred ------CCC----------------CHHHHHHHHHHHHHHHHHhccccCCceEE
Confidence 133 38999999999999999999988876543
No 58
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.56 E-value=6.5e-15 Score=140.54 Aligned_cols=156 Identities=17% Similarity=0.044 Sum_probs=118.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| + .+..++..|+..++.+.++..-+
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 89999999999999999999999999999999999987 45566665 3 22345677788888777777666
Q ss_pred eeeEEE---e--------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 227 TIVGAI---F--------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 227 TiIgI~---~--------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..++-. + ...++.|.|+ . +..+.+++.+.. ...+..+.|+|+......|++.++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~-----~~~~~~a~G~gs~~~~~~Le~~~~-------- 148 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTL-----VKVPYAAHGYGAYFCLSILDRYYK-------- 148 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcce-----EECCeeEEeecHHHHHHHHHhccC--------
Confidence 655521 1 1246667885 2 335556666655 345688999999999998888543
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++ +.|||.+|+.+|+.....||..||+++.+
T Consensus 149 ---~~m----------------s~eeai~l~~~a~~~~~~rd~~~~~~i~i 180 (193)
T cd03758 149 ---PDM----------------TVEEALELMKKCIKELKKRFIINLPNFTV 180 (193)
T ss_pred ---CCC----------------CHHHHHHHHHHHHHHHHHhccccCCceEE
Confidence 233 38999999999999999999999877643
No 59
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.55 E-value=5.1e-15 Score=146.94 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=115.3
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~~~~a 221 (486)
+++.|+|+||++++||||||||+|++.|.++.+++++||++++ ++.++.+| +.+.+ +...|+..++.+.+
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3567999999999999999999999999999999999999986 55555555 33333 34445556666655
Q ss_pred ccccceeeEEE-------------ecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------FADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 222 V~~GtTiIgI~-------------~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+..-+..++.. +...++.|.|. . +..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~-----~~~~~a~G~gs~~~~~~Le~~~~~ 181 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYS-----GWKATAIGQNNQTAQSILKQEWKE 181 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEe-----cceEEEECCCcHHHHHHHHHhccC
Confidence 55443333211 12356667884 3 3366666666653 356788899998888888774433
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.|||.+|+.+|+..++.+|..+|.+++
T Consensus 182 -----------~m----------------s~eeai~l~~~al~~~~~~d~~s~~~ve 211 (253)
T PTZ00246 182 -----------DL----------------TLEQGLLLAAKVLTKSMDSTSPKADKIE 211 (253)
T ss_pred -----------CC----------------CHHHHHHHHHHHHHHHHhccCCCCCcEE
Confidence 33 3899999999999999999988887654
No 60
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.54 E-value=1e-14 Score=141.93 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=114.5
Q ss_pred ccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccc
Q psy10990 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKT 224 (486)
Q Consensus 155 tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~ 224 (486)
+|||+||++++||||||+|+|+|.|.++.+++++||++++ +..++.+| ..++.++.+|+.+++.+..+..
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4999999999999999999999999999999999999986 55555555 2224467788888887777666
Q ss_pred cceeeEE------------EecCeEEEEEeCC---CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH
Q psy10990 225 GTTIVGA------------IFADGVVLGADTR---ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE 289 (486)
Q Consensus 225 GtTiIgI------------~~kdGVVlAaDtr---~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~ 289 (486)
-+..++- -+...++.|.|.. +..+.+++.+..- -..+..+.|+|+......|++.++
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~----~~~~~~a~G~g~~~a~~~Le~~~~---- 152 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRY----EERGYHAVGSGSVFAKGALKKLYS---- 152 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCee----ecCCeEEEeccHHHHHHHHHhcCC----
Confidence 5554431 1123466678853 3344555554220 123578899999988888887443
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCC
Q psy10990 290 LLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSN 341 (486)
Q Consensus 290 ~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~n 341 (486)
.++ +.+||.+|+.+|+..++.||..||+.
T Consensus 153 -------~~m----------------s~eeai~l~~~al~~~~~~d~~s~~~ 181 (219)
T TIGR03690 153 -------PDL----------------DEDDALRVAVEALYDAADDDSATGGP 181 (219)
T ss_pred -------CCc----------------CHHHHHHHHHHHHHHHHhcccccCCc
Confidence 233 38999999999999999999988864
No 61
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.54 E-value=8.5e-15 Score=141.12 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=118.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++.+|||+||++++||||||+|+|++.+ ++..++++||++++ ++.++.+| +.+ ..++.+|+..++...
T Consensus 22 ~~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~ 100 (209)
T cd01911 22 EAVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPI 100 (209)
T ss_pred HHHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34679999999999999999999999975 66779999999986 55565665 222 345667777777766
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
.+..-+..++.. +...+|.+.|.. +....+++.++.. ..+..+.|+|+......|++.++
T Consensus 101 ~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~-----~~~~~a~G~g~~~~~~~L~~~~~ 175 (209)
T cd01911 101 PVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYF-----GYKATAIGKGSQEAKTFLEKRYK 175 (209)
T ss_pred CHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCee-----eeeEEEeCCCcHHHHHHHHHhcc
Confidence 666555555421 124677778853 3355566666553 36678899999999999988664
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++ +.+||.+|+++++..++.||. +|.++++
T Consensus 176 ~~m---------------------------s~~ea~~l~~~~l~~~~~~d~-~~~~~~i 206 (209)
T cd01911 176 KDL---------------------------TLEEAIKLALKALKEVLEEDK-KAKNIEI 206 (209)
T ss_pred cCC---------------------------CHHHHHHHHHHHHHHHHhccC-CCCcEEE
Confidence 332 288999999999999999999 8877654
No 62
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.53 E-value=1.1e-14 Score=142.38 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=117.4
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~ 219 (486)
.+++++|||+||++++||||||+|+|++ +.++.+++++||++++ ++.++.+| + .++.++.+|+..++.+
T Consensus 21 ~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (227)
T cd03750 21 LAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEP 99 (227)
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 3456799999999999999999999998 6889999999999986 56666665 2 2244577888888877
Q ss_pred ccccccceeeEEE-------------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI-------------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 220 ~aV~~GtTiIgI~-------------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
.++..-+..++-. ....++.|.|.. +..+.+++.++. ...+..+.|+|+......|++.++
T Consensus 100 ~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~-----~~~~~~a~G~g~~~~~~~Le~~~~ 174 (227)
T cd03750 100 IPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSY-----FTWKATAIGKNYSNAKTFLEKRYN 174 (227)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCE-----EeeeEEEECCCCHHHHHHHHhhcc
Confidence 7776555555411 123566678864 345566666655 345778899999888888887553
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
. ++ +.+||.+|+.+|+..++.||+ ++.+++
T Consensus 175 ~-----------~m----------------s~eeai~l~~~~l~~~~~~~l-~~~~ie 204 (227)
T cd03750 175 E-----------DL----------------ELEDAIHTAILTLKEGFEGQM-TEKNIE 204 (227)
T ss_pred C-----------CC----------------CHHHHHHHHHHHHHHHhcccC-CCCcEE
Confidence 3 33 389999999999999988876 665543
No 63
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.52 E-value=1e-14 Score=140.77 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=115.1
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
+++|||+||++++||||||+|+|++ +.++.+++++||++++ +..++.+| +.+.++..+|+..++.+..+
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 103 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV 103 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 5689999999999999999999998 6788889999999986 56666666 22245677788777776666
Q ss_pred cccceeeEEE-------------ecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAI-------------FADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQL 288 (486)
Q Consensus 223 ~~GtTiIgI~-------------~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l 288 (486)
..-+..++.. +...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.++.++
T Consensus 104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~-----~~~~~a~G~g~~~~~~~Le~~~~~~m 178 (211)
T cd03756 104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYN-----EYKATAIGSGRQAVTEFLEKEYKEDM 178 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCee-----eeEEEEECCCCHHHHHHHHhhccCCC
Confidence 5444434311 1235666788643 355566666542 34578899999999999888554332
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 289 ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 289 ~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.+||.+|+++|+..++.+|. +|+++++
T Consensus 179 ---------------------------~~~ea~~l~~~~l~~~~~~~~-~~~~~~v 206 (211)
T cd03756 179 ---------------------------SLEEAIELALKALYAALEENE-TPENVEI 206 (211)
T ss_pred ---------------------------CHHHHHHHHHHHHHHHhcccC-CCCcEEE
Confidence 288999999999999988877 8877654
No 64
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.52 E-value=1.3e-14 Score=143.14 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=111.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-----ceehhccc-----hhh----hHhHHhHhccCCC-ccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-----LIAVTVSS-----IGF----QKNAFLASKGYSG-PTA 221 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-----~~~~~~A~-----~~l----~~nl~L~~le~~~-~~a 221 (486)
|=+|||+++||||||||+|++.|.++.+ +++||+++| ++.++.|| +.+ +.++.+|++.++. +.+
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 5689999999999999999988866654 899999985 57777776 233 4568899999998 688
Q ss_pred ccccceeeEEE-------------------ecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------------FADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280 (486)
Q Consensus 222 V~~GtTiIgI~-------------------~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL 280 (486)
|...+..++.. ....++.|.|. . +..+.+++.++..+..- ...+...|+ +......|
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a-~~~~~AiG~-~~~a~~~L 157 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATP-DTPFLQIGE-TKYGKPIL 157 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecC-CCceeeeCC-chhhHHHH
Confidence 87777655321 12346667884 2 34556666665422110 002234443 46666666
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 281 ~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
++.++ ..|+ .|||.+|+.+|+.+++.||..||++|+++
T Consensus 158 ek~yk-----------~~ms----------------~eeai~la~~al~~a~~rd~~sg~~iev~ 195 (236)
T cd03765 158 DRVIT-----------PDTS----------------LEDAAKCALVSMDSTMRSNLSVGPPLDLL 195 (236)
T ss_pred HHhcC-----------CCCC----------------HHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 66442 3333 89999999999999999999999988754
No 65
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.50 E-value=3e-14 Score=134.89 Aligned_cols=157 Identities=28% Similarity=0.299 Sum_probs=112.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~Gt 226 (486)
||++|++++||||||+|+|.++|.++.+++++||++++ ++.++.+| +.+ ..++..|+..++.+..+..-+
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999987 55666665 222 334556666666665555444
Q ss_pred eeeEEE---------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAI---------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~---------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-. +...++.|.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~-----~~~~~a~G~g~~~~~~~L~~~~~----------- 144 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSII-----EDKYTATGSGSPYAYGVLEDEYK----------- 144 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEE-----EcCEEEEcCcHHHHHHHHHhcCC-----------
Confidence 444311 123466668863 3355566666553 34678888998888877777442
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ +.+||.+|+.+|+..++.||..+|++++++
T Consensus 145 ~~~----------------~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~ 177 (188)
T cd03764 145 EDM----------------TVEEAKKLAIRAIKSAIERDSASGDGIDVV 177 (188)
T ss_pred CCC----------------CHHHHHHHHHHHHHHHHhhcCCCCCcEEEE
Confidence 223 388999999999999999999999876543
No 66
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.50 E-value=2.7e-14 Score=139.12 Aligned_cols=158 Identities=23% Similarity=0.170 Sum_probs=112.4
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||+|+|++ +.++.+++++||++++ ++.++.+| +.+ .++..+|+..++.+..
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46799999999999999999999998 6788889999999986 55555555 222 3345666666666655
Q ss_pred ccccceeeEEE-------------ecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-------------FADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 222 V~~GtTiIgI~-------------~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
+..-+..++.. +...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~-----~~~~~a~G~g~~~~~~~L~~~~~~- 177 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALL-----EYKATAIGAGRQAVTEFLEKEYRE- 177 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCee-----cceEEEECCCCHHHHHHHHHhccC-
Confidence 55544444321 1234666688533 355566666553 346788999999888888875543
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ +.+||.+|+++|+..+.. |..+|++++
T Consensus 178 ----------~~----------------~~eeai~l~~~al~~~~~-d~~~~~~i~ 206 (224)
T TIGR03633 178 ----------DL----------------SLDEAIELALKALYSAVE-DKLTPENVE 206 (224)
T ss_pred ----------CC----------------CHHHHHHHHHHHHHHHhc-ccCCCCcEE
Confidence 23 289999999999999776 878876643
No 67
>KOG0173|consensus
Probab=99.48 E-value=1.3e-14 Score=140.68 Aligned_cols=141 Identities=30% Similarity=0.343 Sum_probs=111.8
Q ss_pred CCeEEEeecCCCCCCceeeecceeeeee------ecceehhccchhhhHhHHhHhccCCCcccccccceee--------E
Q psy10990 165 ADGVVLGADTRATDDTIVAEKNCYLLSY------SDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIV--------G 230 (486)
Q Consensus 165 ~~GVVLaaDsRAT~G~~Va~k~~~KI~~------~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiI--------g 230 (486)
-+|.|++--.+. .-+.-+.||+- +|+..++. .++.+++||++..++...|.++.+++ |
T Consensus 58 T~G~IvaDKnC~-----KIH~ia~~IyccGAGtAADte~vt~---m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG 129 (271)
T KOG0173|consen 58 TEGPIVADKNCE-----KIHFIAPNIYCCGAGTAADTEMVTR---MISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQG 129 (271)
T ss_pred cCCCeeecchhH-----HHhhcccceEEccCCchhhHHHHHH---HHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcC
Confidence 467777654442 22344455554 34444444 36789999999999999999998887 6
Q ss_pred EEecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q psy10990 231 AIFADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLR 309 (486)
Q Consensus 231 I~~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls 309 (486)
.+....|+.++|..+ +++.+.++++.+++++.. .+||+.+++.+|+++++..+.
T Consensus 130 ~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~a-----lGSGslaAmsvlEsr~k~dlt-------------------- 184 (271)
T KOG0173|consen 130 HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTA-----LGSGSLAAMSVLESRWKPDLT-------------------- 184 (271)
T ss_pred cccceeEEccccCCCCceEEEcCCCCcCccceee-----eccchHHHHHHHHHhcCcccC--------------------
Confidence 777788999999655 588888999999877654 899999999999997765554
Q ss_pred HHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 310 QMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 310 ~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+|||++||++||.|||+||++||||||+|
T Consensus 185 -------~eea~~Lv~eAi~AGi~nDLgSGsnvdlc 213 (271)
T KOG0173|consen 185 -------KEEAIKLVCEAIAAGIFNDLGSGSNVDLC 213 (271)
T ss_pred -------HHHHHHHHHHHHHhhhccccCCCCceeEE
Confidence 89999999999999999999999999988
No 68
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.48 E-value=5.9e-14 Score=135.71 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=111.3
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|++. .++.+++++||++++ ++.++.+| +.+ +++..+|+..++.+.
T Consensus 22 ~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 100 (213)
T cd03753 22 EAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPM 100 (213)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4467999999999999999999999986 567788999999986 56666665 222 345666776677665
Q ss_pred cccccceeeEE------------------EecCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 221 ARKTGTTIVGA------------------IFADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 221 aV~~GtTiIgI------------------~~kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
.+..-+..++- -+...++.|.|... ..+.+++.++. ...+..+.|+|+......|+
T Consensus 101 ~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~-----~~~~~~a~G~~~~~~~~~L~ 175 (213)
T cd03753 101 TVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTF-----TRCDAKAIGSGSEGAQSSLQ 175 (213)
T ss_pred CHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCe-----ecccEEEECCCcHHHHHHHH
Confidence 55433322221 12234666788543 34555566554 23677889999998888888
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+.++.+ ++ .+||.+|+++|+.....+ ..++.+++++
T Consensus 176 ~~~~~~-----------ls----------------~eeai~l~~~~l~~~~~~-~~~~~~~ei~ 211 (213)
T cd03753 176 EKYHKD-----------MT----------------LEEAEKLALSILKQVMEE-KLNSTNVELA 211 (213)
T ss_pred hhccCC-----------CC----------------HHHHHHHHHHHHHHHhcc-cCCCCcEEEE
Confidence 855432 32 899999999999886654 4666666543
No 69
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.46 E-value=9.2e-14 Score=134.45 Aligned_cols=162 Identities=16% Similarity=0.052 Sum_probs=118.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|+|+||++++||||||+|+|++.+ .++..+||++++ ++.++.+| ..++.++.+|+.+++.+.
T Consensus 22 ~av~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~ 98 (211)
T cd03749 22 EAVKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPI 98 (211)
T ss_pred HHHhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34678999999999999999999998876 357889999986 56666665 223456788888888877
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++..-+..++-. +...++.+.|.. +..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 99 ~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~-----~~~~~a~G~g~~~a~~~Le~~~~~ 173 (211)
T cd03749 99 PVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYF-----EYKATSIGARSQSARTYLERHFEE 173 (211)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEe-----eeeEEEECCCcHHHHHHHHHhhcc
Confidence 776665555421 123466678853 3455566666552 356778899999999988886532
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccc-CCCCCCccc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDL-GSGSNIDLC 345 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~-gSG~nVdl~ 345 (486)
.+.+ +.+||.+|+.+++..++.+|. .++++|+++
T Consensus 174 ---------~~~m----------------s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ 208 (211)
T cd03749 174 ---------FEDC----------------SLEELIKHALRALRETLPGEQELTIKNVSIA 208 (211)
T ss_pred ---------ccCC----------------CHHHHHHHHHHHHHHHhccCCCCCCCcEEEE
Confidence 0123 388999999999999999888 888888764
No 70
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.44 E-value=1.2e-13 Score=136.15 Aligned_cols=158 Identities=22% Similarity=0.156 Sum_probs=112.6
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|++ +.++..++++||++++ ++.++.+| +.+ ..+..+|+..++.+.
T Consensus 31 ~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 109 (241)
T PRK03996 31 EAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPI 109 (241)
T ss_pred HHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 346799999999999999999999999 6788889999999987 55565665 222 345667777777666
Q ss_pred cccccceeeEEE-------------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~-------------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
.+..-+..++-. +...++.+.|.. +..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 110 ~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~-----~~~~~a~G~g~~~~~~~Le~~~~~ 184 (241)
T PRK03996 110 GVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYL-----EYKATAIGAGRDTVMEFLEKNYKE 184 (241)
T ss_pred CHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCee-----cceEEEECCCcHHHHHHHHHhccc
Confidence 655554444311 123566678853 3456666666653 346788999999999998886544
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
++ +.+||.+|+.+|+..+.. |..+|+++
T Consensus 185 ~~---------------------------s~eeai~l~~~al~~~~~-~~~~~~~i 212 (241)
T PRK03996 185 DL---------------------------SLEEAIELALKALAKANE-GKLDPENV 212 (241)
T ss_pred CC---------------------------CHHHHHHHHHHHHHHHhc-cCCCCCcE
Confidence 33 288999999999998864 44566443
No 71
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.44 E-value=5.1e-14 Score=132.47 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=112.0
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecc-eeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKN-CYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~-~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
+++|||+||++++||||||+|+|.|.|+.+.+++ .+||++++ ++.++.+| ..+..++..|+..++.+..
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 3689999999999999999999999999998888 69999985 55556665 2223456666666665554
Q ss_pred cc----ccceee-EEEe--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHHH
Q psy10990 222 RK----TGTTIV-GAIF--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 222 V~----~GtTiI-gI~~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~lr 285 (486)
+. .-+..+ ...+ ...++.+.|... ..+.+++.++. ... +..+.|+|+......|++.++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~-----~~~~~~~aiG~g~~~~~~~l~~~~~ 155 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSY-----IECKRFAAIGSGSQFAQPILEKLYK 155 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEE-----EEBSSEEEESTTHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeecccccc-----ccccccccchhcchhhhHHHHhhcc
Confidence 44 111111 1111 134666788543 24445554443 234 688899999888888887552
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
. .+ +.+||.+++++++..+..+|..+|+++++
T Consensus 156 ~-----------~~----------------~~~ea~~~~~~~l~~~~~~d~~~~~~~~v 187 (190)
T PF00227_consen 156 P-----------DL----------------SLEEAIELALKALKEAIDRDILSGDNIEV 187 (190)
T ss_dssp T-----------TS----------------SHHHHHHHHHHHHHHHHHHBTTSTSEEEE
T ss_pred C-----------CC----------------CHHHHHHHHHHHHHHHHhhCCccCCeEEE
Confidence 2 23 38999999999999999999999977654
No 72
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.43 E-value=1.9e-13 Score=131.69 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=115.4
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
+++++|+|+||++++||||||+|+|.+. .++.+++++||++++ ++.++.+| + .++.+..+|+.+++.+.
T Consensus 22 ~av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 100 (207)
T cd03755 22 EAVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPV 100 (207)
T ss_pred HHHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3467899999999999999999999765 588888999999986 55565555 2 22445778888888777
Q ss_pred cccccceeeEEE---e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI---F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~---~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++..-+..++.. + ...++.|.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 101 ~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~-----~~~~~a~G~gs~~~~~~Le~~~~ 175 (207)
T cd03755 101 TVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYS-----AWKANAIGRNSKTVREFLEKNYK 175 (207)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEE-----cceEEEECCCCHHHHHHHHhhcc
Confidence 777666665411 1 13466678853 4456666666653 34668899999988888888554
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.+ + +.+||.+|+.+|+..++. .|+.+++++
T Consensus 176 ~~-----------m----------------s~eeai~l~~~~l~~~~~---~~~~~~e~~ 205 (207)
T cd03755 176 EE-----------M----------------TRDDTIKLAIKALLEVVQ---SGSKNIELA 205 (207)
T ss_pred CC-----------C----------------CHHHHHHHHHHHHHHHhC---CCCCeEEEE
Confidence 33 3 389999999999998874 566666643
No 73
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.42 E-value=2.5e-13 Score=128.24 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=111.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|.+.|..+..++.+||++++ .+.++.+| ..+.+++..|+..++.+.++..-.
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999987 56666666 222345667777777666655554
Q ss_pred eeeEE-Ee--------cCeEEEEEeC--CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 227 TIVGA-IF--------ADGVVLGADT--RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 227 TiIgI-~~--------kdGVVlAaDt--r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..++- .+ ...++.|.|. .+..+.+++.++. ...+..+.|+|+......|++.++.
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~-----~~~~~~a~G~~~~~~~~~Le~~~~~--------- 146 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSL-----IEAPFVATGSGSKYAYGILDRGYKP--------- 146 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCe-----EecCEEEEcccHHHHHHHHHhccCC---------
Confidence 44431 11 1245556775 2335556666655 2355777888887777777764432
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+ +.+||.+++.+|+..+..||..+|+++++
T Consensus 147 --~~----------------s~~ea~~~~~~~l~~~~~~d~~~~~~~~v 177 (189)
T cd01912 147 --DM----------------TLEEAVELVKKAIDSAIERDLSSGGGVDV 177 (189)
T ss_pred --CC----------------CHHHHHHHHHHHHHHHHHhcCccCCcEEE
Confidence 23 38899999999999999999998876543
No 74
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.39 E-value=8.7e-13 Score=123.25 Aligned_cols=156 Identities=25% Similarity=0.258 Sum_probs=111.7
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|.|.|..+..++++||++++ ++.++.+| +.+.+++..|+..++....+..-+
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 45666666 222345566666666555444444
Q ss_pred eeeEEE-----------ecCeEEEEEeC--CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 227 TIVGAI-----------FADGVVLGADT--RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 227 TiIgI~-----------~kdGVVlAaDt--r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..++-. ....++.|.|. .+..+.+++.++..+ .+..+.|+|+......|++.++.
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~-----~~~~a~G~g~~~~~~~L~~~~~~------- 148 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIE-----YKATAIGSGSQYALGILEKLYKP------- 148 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEee-----ccEEEECCCcHHHHHHHHHHccC-------
Confidence 433211 12346667785 233555666665533 47788999998888888875533
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+ +.+||.+|+++++..+..+|..+|.++++
T Consensus 149 ----~~----------------s~~ea~~l~~~~l~~~~~~~~~~~~~~~i 179 (182)
T cd01906 149 ----DM----------------TLEEAIELALKALKSALERDLYSGGNIEV 179 (182)
T ss_pred ----CC----------------CHHHHHHHHHHHHHHHHcccCCCCCCEEE
Confidence 22 38899999999999999999888866543
No 75
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.39 E-value=6.2e-13 Score=129.11 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=117.1
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~ 223 (486)
++|||++|++++||||||+|+|.+.+ .+.+++.+||++++ ++.++.+| ..++.+..+|+++++.+.++.
T Consensus 27 ~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~ 105 (215)
T cd03754 27 NAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVD 105 (215)
T ss_pred cCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 47999999999999999999998876 44456899999987 56666666 333456788888888888877
Q ss_pred ccceeeEEE---e----------cCeEEEEEeC--CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHH
Q psy10990 224 TGTTIVGAI---F----------ADGVVLGADT--RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQL 288 (486)
Q Consensus 224 ~GtTiIgI~---~----------kdGVVlAaDt--r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l 288 (486)
.-+..++.. + ...++.|.|+ .+..+.+++.++..+ .+..+.|+|+......|++.++...
T Consensus 106 ~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~-----~~~~a~G~gs~~~~~~Le~~~~~~~ 180 (215)
T cd03754 106 VLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAG-----YKATAAGVKEQEATNFLEKKLKKKP 180 (215)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEe-----EEEEEECCCcHHHHHHHHHHhcccc
Confidence 776666521 1 2356667885 344666777776533 4677899999999999988654321
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 289 ELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 289 ~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
.+. ++.|||.+|+.+|+..++.||.. |.+++
T Consensus 181 ---------~~~--------------~s~eeai~l~~~al~~~~~rd~~-~~~~e 211 (215)
T cd03754 181 ---------DLI--------------ESYEETVELAISCLQTVLSTDFK-ATEIE 211 (215)
T ss_pred ---------ccC--------------CCHHHHHHHHHHHHHHHhcccCC-CCcEE
Confidence 110 13899999999999999999865 65544
No 76
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.38 E-value=3.6e-13 Score=130.64 Aligned_cols=157 Identities=18% Similarity=0.060 Sum_probs=112.0
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~ 219 (486)
.+++++|+|+||++++||||||+|+|.+. ..+..++++||++++ ++.++.+| + .+..++.+|+..++.+
T Consensus 24 ~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~ 102 (212)
T cd03751 24 NKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTP 102 (212)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 34467899999999999999999999986 555567899999987 55566655 2 2244567787778777
Q ss_pred ccccccceeeEE------E-------ecCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGA------I-------FADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 220 ~aV~~GtTiIgI------~-------~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
.++..-+..++. . +...++.|.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 103 ~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~-----~~~~~a~G~g~~~a~~~Lek~~~ 177 (212)
T cd03751 103 IPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSY-----GYFGCAIGKGKQAAKTELEKLKF 177 (212)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEE-----eeEEEEECCCCHHHHHHHHHhcc
Confidence 776666655442 1 123567778853 3456666666653 35678899999999999998554
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
. +++ .+||.+|+.+|+...+-++-.++
T Consensus 178 ~-----------dms----------------~eeai~l~~~~L~~~~~~~~~~~ 204 (212)
T cd03751 178 S-----------ELT----------------CREAVKEAAKIIYIVHDEIKDKA 204 (212)
T ss_pred C-----------CCC----------------HHHHHHHHHHHHHHHhhccCCCC
Confidence 3 333 88999999999988775443333
No 77
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.8e-10 Score=101.64 Aligned_cols=169 Identities=19% Similarity=0.225 Sum_probs=126.5
Q ss_pred ccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCC-cH
Q psy10990 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIP-RV 301 (486)
Q Consensus 224 ~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~-~v 301 (486)
.++|+++++-++-+++|.|.+.+.+..+..++..|+.+|.. ++.++++|+++|+..|.+++..+++.|. |... ..
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---g~L~raa 79 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GDLFRAA 79 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---CcHHHHH
Confidence 57899999999999999999999999999888888877755 8999999999999999999999998664 1111 11
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceee--cCeE
Q psy10990 302 ITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDT--VPFC 379 (486)
Q Consensus 302 ~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e--~~~~ 379 (486)
-.+++.++.-.+. |-+.+-++++ |. -.++-+...|...+ .+..
T Consensus 80 velaKdwr~Dk~l-------------------------------r~LEAmllVa--d~--~~il~isG~gdV~epe~~~~ 124 (178)
T COG5405 80 VELAKDWRTDKYL-------------------------------RKLEAMLLVA--DK--THILIITGNGDVIEPEDDII 124 (178)
T ss_pred HHHHHhhhhhhHH-------------------------------HHHhhheeEe--CC--CcEEEEecCcceecCCCCeE
Confidence 1222222221111 2233334454 33 35666777777663 3499
Q ss_pred EEcCchhHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE
Q psy10990 380 TMGSGSLAAMSVFESNWKP-NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK 433 (486)
Q Consensus 380 AiGsGs~~a~~~Lek~yk~-dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt 433 (486)
|||||..++++..+..++. ++| |.+++.++|+.+.+-+.+++.||.|-.++
T Consensus 125 aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 125 AIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred EEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 9999999999998888763 776 88899999999988888888888887665
No 78
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.13 E-value=1.5e-10 Score=113.83 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=97.7
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCC-Ccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYS-GPT 220 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~-~~~ 220 (486)
+++.|||+|||+++||||||+|+| +++.+||+++| +++++.+| +.+.. ....|+..++ .+.
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENP--------SRSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 457899999999999999999997 36789999986 77777776 22222 2444555555 344
Q ss_pred cccccc----eeeEEE--------ecCeEEEEEeC--C-CCcCeeeecCCcceEEEecCe-EEEEecCchHHHHHHHHHH
Q psy10990 221 ARKTGT----TIVGAI--------FADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 221 aV~~Gt----TiIgI~--------~kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~-i~~~gSGs~aD~~vL~~~l 284 (486)
.++.-+ ..++.. ....++.+.|. . +..+.+++.++. ...+ ..+.|+|+......|++.+
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~-----~~~~~~~aiG~gs~~a~~~Lek~y 169 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSI-----VDERGFVVMGGTTEPIATALKESY 169 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCc-----eeccceEEECCChHHHHHHHHHhc
Confidence 444332 222211 11245556763 2 345556666654 3334 6888999998888888854
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc--ccccCCCCC
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV--FNDLGSGSN 341 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi--~nD~gSG~n 341 (486)
+. .++ .+||.+|+.+|+..++ .+|..++.+
T Consensus 170 ~~-----------~ms----------------~eeai~la~~aL~~~~~~~r~~~~~~~ 201 (228)
T TIGR03691 170 RD-----------GLS----------------LADALGLAVQALRAGGNGEKRELDAAS 201 (228)
T ss_pred CC-----------CCC----------------HHHHHHHHHHHHHHHhccccccCCccc
Confidence 32 333 8999999999999884 444455444
No 79
>KOG0175|consensus
Probab=99.12 E-value=1.2e-11 Score=120.59 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=110.2
Q ss_pred ccceEEEEEe--CCeEEEeecCCCCCCceeeecceeeeee--ecceehhccchh-----hhHhHHhHhccCCCccccccc
Q psy10990 155 TGTTIVGAIF--ADGVVLGADTRATDDTIVAEKNCYLLSY--SDLIAVTVSSIG-----FQKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 155 tGTTivgv~~--~~GVVLaaDsRAT~G~~Va~k~~~KI~~--~d~~~~~~A~~~-----l~~nl~L~~le~~~~~aV~~G 225 (486)
.|--||++-- .-|--+|+-+ -|.+--|.+ +.|++.++|.+. +.++++||+++++++..|..+
T Consensus 80 ~~GvivAvDSRAs~G~YIasqt---------v~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaA 150 (285)
T KOG0175|consen 80 KGGVIVAVDSRASAGSYIASQT---------VKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAA 150 (285)
T ss_pred cCcEEEEEeccccccceeechh---------hceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHH
Confidence 3446776632 3455555543 244445777 679999999844 467899999999999999999
Q ss_pred ceeeEEEe---c-----CeEEE-EEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 226 TTIVGAIF---A-----DGVVL-GADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 226 tTiIgI~~---k-----dGVVl-AaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
+.+++... + -|.++ ++|++++.-.++ +.+..| +..++++++||++.++++|++.+|
T Consensus 151 SKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYV-DseG~R---l~G~~FSVGSGs~yAYGVLDsgYr----------- 215 (285)
T KOG0175|consen 151 SKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYV-DSEGTR---LSGDLFSVGSGSTYAYGVLDSGYR----------- 215 (285)
T ss_pred HHHHHHHHhhccCcchhheeeEeeccCCCCceEEE-cCCCCE---ecCceEeecCCCceeEEeeccCCC-----------
Confidence 99997442 2 24444 588887643333 223333 678999999999999999999443
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.+++ .|||.+|+|+||.++.+||.+|||.||++
T Consensus 216 ~dls----------------~eEA~~L~rrAI~hAThRDaySGG~vnly 248 (285)
T KOG0175|consen 216 YDLS----------------DEEAYDLARRAIYHATHRDAYSGGVVNLY 248 (285)
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHhcccccCceEEEE
Confidence 3443 88999999999999999999999876544
No 80
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.1e-08 Score=97.09 Aligned_cols=200 Identities=21% Similarity=0.297 Sum_probs=139.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEe---cC-eEEEEecCchHHHHHHHHHHHHHHHHhHhhc-CCCCc
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYM---AK-NIYCCGAGTAADTQVTTDLIASQLELLKLNT-GKIPR 300 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I---~~-~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~-g~~~~ 300 (486)
+-++|++...|.|.++|+|...|. +.-...+|+|.. ++ -+..+.+|..+-.|.+.+.+.+..+...-.. -.-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGv-D~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGV-DYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCc-hHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 458999999999999999876553 222334555543 22 3556779999999988887776664211000 01122
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceee----
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDT---- 375 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e---- 375 (486)
+- ||.-|+-+++..-+.+|..-+.+-+ -.|.|+++++|.=.++ |.||.+.|.|++.+
T Consensus 81 m~----------------eattlvgetvrEv~~rds~~leka~--~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~e 142 (255)
T COG3484 81 MY----------------EATTLVGETVREVQARDSPALEKAG--IDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPE 142 (255)
T ss_pred HH----------------HHHHHHHHHHHHHHhccCchhhccC--cceeEEEEEcceecCCCceeEEEccCCCeeecCCC
Confidence 22 2223333333333334443332222 2377999999965544 89999999999985
Q ss_pred cCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCcccc
Q psy10990 376 VPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445 (486)
Q Consensus 376 ~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI 445 (486)
.+|.-+|.. .+.+++|++.+..++.+|||.++++-++...+..+...|-++++.++.+|.++.-....|
T Consensus 143 tpf~QiGEt-KYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~~~ri 211 (255)
T COG3484 143 TPFLQIGET-KYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRHTLRI 211 (255)
T ss_pred CceeEcccc-ccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeeeeeEe
Confidence 479999954 677999999999999999999999999999999999899999999999998655444433
No 81
>KOG0179|consensus
Probab=98.78 E-value=6.4e-09 Score=99.13 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=115.8
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-cceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-DLIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
..-|-|||||.-.|-.|+|+|||-|.|.-|-+|...||+.. |...++.+| ..+...++.|+..+.+...+
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 45788999999999999999999999999999999999995 556666665 11234577888888777777
Q ss_pred cccceeeEEEe---------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 223 KTGTTIVGAIF---------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 223 ~~GtTiIgI~~---------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
...+.+++... .-.|+.|.|..+ ..+++++-++.+|.. .-++||+..--.-.|++.+...-...
T Consensus 106 ~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~-----~~AgGsa~~mI~PfLDnQi~~kn~~~ 180 (235)
T KOG0179|consen 106 HSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVT-----CRAGGSAASMIQPFLDNQIGHKNQNL 180 (235)
T ss_pred HHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeee-----eecCCcchhhhhhhhhhhccCcCccc
Confidence 77777776332 235666678643 355677777776533 22344444333333443322111100
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+..+.. ..++|+|+.|++++..+|..||.+.|.++.+|
T Consensus 181 --e~~~~~--------------~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~ 218 (235)
T KOG0179|consen 181 --ENAERT--------------PLSLERAIRLVKDAFTSAAERDIYTGDKLEIC 218 (235)
T ss_pred --ccCccc--------------ccCHHHHHHHHHHHhhhhhhcccccCCcEEEE
Confidence 111111 12489999999999999999999999876544
No 82
>KOG0185|consensus
Probab=98.62 E-value=4.1e-07 Score=88.28 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=49.7
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhHhHH
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQKNAF 210 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~nl~ 210 (486)
-.+.-|||+++|++|+||||+|||++.|.|+.---++++.|++.. +..++.+| |.+.+.++
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~ 101 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLE 101 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999975 44445544 55555444
No 83
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=98.40 E-value=7.4e-07 Score=79.91 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=76.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||++|++++||||||+|+|.+.|..+......|+++++ ...++.++ ..+....+.|+..++.+..+..-.
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999889999999987 55555555 222344556655555443332222
Q ss_pred eeeE----E------EecCeEEEEEeCC-CCcCeeeecCCcceEEEecC-eEEEEecCchHHHHHHHHHH
Q psy10990 227 TIVG----A------IFADGVVLGADTR-ATDDTIVAEKNCQKIHYMAK-NIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 227 TiIg----I------~~kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~-~i~~~gSGs~aD~~vL~~~l 284 (486)
..++ . ...+.++.+.|.. +....+.+.+.. +.. ...+.++|+......+.+.+
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~-----~~~~~~~~~G~~~~~~~~~l~~~~ 145 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPV-----IENPGAVATGSRSQRAKSLLEKLY 145 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCE-----eecCcEEEECCCCHHHHHHHHHHh
Confidence 2221 1 1123344445532 223333333332 223 67778888877777766644
No 84
>KOG0176|consensus
Probab=98.38 E-value=5.8e-07 Score=85.31 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=87.2
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhH----hHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQK----NAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~----nl~L~~le~~~~ 219 (486)
.++++.|+|.+||+.++|||||+++|.|+ +..-++.++||..+| ++..+.+| ..+.. +..-|...|+++
T Consensus 28 ieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~ 106 (241)
T KOG0176|consen 28 IEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEP 106 (241)
T ss_pred HHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCc
Confidence 34578999999999999999999999886 455568999999987 55555554 11211 244555667777
Q ss_pred ccccccceee---EEEecCe--------------EEE-EEe-CCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHH
Q psy10990 220 TARKTGTTIV---GAIFADG--------------VVL-GAD-TRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280 (486)
Q Consensus 220 ~aV~~GtTiI---gI~~kdG--------------VVl-AaD-tr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL 280 (486)
..|..-+..+ ++++-++ +++ |.| +.+.++.+++++.. +.-+.=..+||+-++-+.|
T Consensus 107 i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf-----~~~~AKAIGSgsEga~~~L 181 (241)
T KOG0176|consen 107 ISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTF-----IRYKAKAIGSGSEGAESSL 181 (241)
T ss_pred ccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCce-----EEecceeccccchHHHHHH
Confidence 7666554443 4555332 333 456 33445556665543 2233445789999998888
Q ss_pred HHHHHHHHH
Q psy10990 281 TDLIASQLE 289 (486)
Q Consensus 281 ~~~lr~~l~ 289 (486)
.+.+...+.
T Consensus 182 ~~e~~~~lt 190 (241)
T KOG0176|consen 182 QEEYHKDLT 190 (241)
T ss_pred HHHHhhccc
Confidence 886655443
No 85
>KOG0174|consensus
Probab=98.33 E-value=8.8e-08 Score=90.53 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=92.5
Q ss_pred eeeeee------ecceehhccchhhhHhHHhHhccCCCcccccccceeeEE-Eec------CeEEE-EEeCCCC--cCee
Q psy10990 187 CYLLSY------SDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGA-IFA------DGVVL-GADTRAT--DDTI 250 (486)
Q Consensus 187 ~~KI~~------~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI-~~k------dGVVl-AaDtr~t--~g~l 250 (486)
.+||+- +|+|++++. +...+.+|.+++++++.|..+++++.. .|+ .|+++ ++|.+.. .+.+
T Consensus 57 tD~i~cCRSGSAADtQaiaD~---~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~i 133 (224)
T KOG0174|consen 57 TDNIYCCRSGSAADTQAIADI---VRYHLELYTIQENKPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSI 133 (224)
T ss_pred cccEEEecCCchhhHHHHHHH---HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEe
Confidence 456654 688888884 677899999999999999999988853 232 25554 5887654 3334
Q ss_pred eecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy10990 251 VAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAA 330 (486)
Q Consensus 251 i~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~a 330 (486)
...+... .....+++||+..-++.++..+|.+| +.||++.++++|+..
T Consensus 134 plGG~l~-----rq~~aIgGSGStfIYGf~D~~~r~nM---------------------------t~EE~~~fvk~Av~l 181 (224)
T KOG0174|consen 134 PLGGSLT-----RQPFAIGGSGSTFIYGFCDANWRPNM---------------------------TLEECVRFVKNAVSL 181 (224)
T ss_pred ecCceEe-----ecceeeccCCceeeeeeehhhcCCCC---------------------------CHHHHHHHHHHHHHH
Confidence 4444443 35678899999999998888665444 389999999999999
Q ss_pred ccccccCCCCCCcc
Q psy10990 331 GVFNDLGSGSNIDL 344 (486)
Q Consensus 331 gi~nD~gSG~nVdl 344 (486)
+|.||..|||.|.+
T Consensus 182 Ai~rDGsSGGviR~ 195 (224)
T KOG0174|consen 182 AIERDGSSGGVIRL 195 (224)
T ss_pred HHhccCCCCCEEEE
Confidence 99999999987743
No 86
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=97.80 E-value=1.6e-05 Score=75.14 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=70.8
Q ss_pred hhhHhHHhHhccCCCcccccccceeeEEEecC---eEEEEEeCCCCcCeeeecCCcceEEEecC--eEEEEecCchHHHH
Q psy10990 204 GFQKNAFLASKGYSGPTARKTGTTIVGAIFAD---GVVLGADTRATDDTIVAEKNCQKIHYMAK--NIYCCGAGTAADTQ 278 (486)
Q Consensus 204 ~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kd---GVVlAaDtr~t~g~li~~~s~~KI~~I~~--~i~~~gSGs~aD~~ 278 (486)
.+.+++++|+++.++ .++.....+.+.++.. ..++++|.. ..+.+.+.++. +.+ .+.++|||++.+.+
T Consensus 59 ~~~~~~~~y~~~~~~-~aa~l~~~l~~~~~~~~l~a~~iv~~~~-~ly~id~~G~~-----ie~~~~~~a~GSGS~ya~g 131 (171)
T cd01913 59 RFEAKLEQYPGNLLR-AAVELAKDWRTDRYLRRLEAMLIVADKE-HTLLISGNGDV-----IEPDDGIAAIGSGGNYALA 131 (171)
T ss_pred HHHHHHHHhhchHHH-HHHHHHHHHHhccCcCceEEEEEEeCCC-cEEEECCCCCE-----eccCCCeEEEeCCHHHHHH
Confidence 357789999988764 3344433443445443 223344443 44555555554 444 59999999999999
Q ss_pred HHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 279 VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 279 vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.++..++.. .|+ +.+||.+||..++.||.+||++||+
T Consensus 132 ~ld~~yk~~----------~ms-------------------~~~la~~Av~~A~~rd~~tg~~i~~ 168 (171)
T cd01913 132 AARALLDHT----------DLS-------------------AEEIARKALKIAADICIYTNHNITV 168 (171)
T ss_pred HHHHhhccC----------CCC-------------------HHHHHHHHHHHHHhhCcccCCCEEE
Confidence 999965431 122 3489999999999999999999875
No 87
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=97.61 E-value=3.8e-05 Score=72.59 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=70.6
Q ss_pred cceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecC---eEEEEEeCCCCcCeeeecCCcceEEEecC--eEEE
Q psy10990 194 DLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFAD---GVVLGADTRATDDTIVAEKNCQKIHYMAK--NIYC 268 (486)
Q Consensus 194 d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kd---GVVlAaDtr~t~g~li~~~s~~KI~~I~~--~i~~ 268 (486)
|++.++. .+.+++++|+++..+ .++......-.-.+.. ..++++|.. ..+.+.+.++. +.+ ++.+
T Consensus 52 D~q~l~~---~~~~~~~~y~~~~~~-~~a~l~~~~~~~~~~~~l~a~~iv~~~~-~ly~i~~~G~~-----ie~~~~~~a 121 (171)
T TIGR03692 52 DAFTLFE---RFEAKLEEYQGNLTR-AAVELAKDWRTDRYLRRLEAMLIVADKE-TSLLISGTGDV-----IEPEDGIAA 121 (171)
T ss_pred HHHHHHH---HHHHHHHHccCchHH-HHHHHHHHHhhcccccccEEEEEEEcCC-CEEEEcCCCcE-----eccCCCeEE
Confidence 4444444 356788899887632 2222211111122221 223344543 44555555554 443 5999
Q ss_pred EecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 269 CGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 269 ~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+|||++...+.+++.++. ..++|++||.+||..++.||.+||++||+
T Consensus 122 ~GSGS~~a~g~ld~~y~~-----------------------------~~~sa~~la~~Av~~A~~rd~~sg~~i~v 168 (171)
T TIGR03692 122 IGSGGNYALAAARALLRN-----------------------------TDLSAEEIAREALKIAADICIYTNHNITI 168 (171)
T ss_pred EeCCHHHHHHHHHHhhhc-----------------------------CCCCHHHHHHHHHHHHHhhCccCCCCEEE
Confidence 999999999999985522 12348899999999999999999998875
No 88
>KOG0180|consensus
Probab=97.59 E-value=0.00022 Score=66.73 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=103.8
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-cceehhccc---------hhhhHhHHhHhccCCCccccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-DLIAVTVSS---------IGFQKNAFLASKGYSGPTARK 223 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~ 223 (486)
-.|-++||+.-+++|-+|+|.|--.-+.-.+++-+|||++ |+..++.++ +.+.....||+++.++..-..
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4788999999999999999999888888888999999996 355555554 333445778888777655444
Q ss_pred ccceeeE-EEe--------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhh
Q psy10990 224 TGTTIVG-AIF--------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLN 294 (486)
Q Consensus 224 ~GtTiIg-I~~--------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~ 294 (486)
.=+.+++ +.| ..-||-+.|.. .+..+..-+.---....+.+.+.++++-.-+++.+..++.
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~--~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~p-------- 155 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDD--NKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEP-------- 155 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCC--CCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCC--------
Confidence 4445553 222 23466555542 1222221111001112356666777776666666665543
Q ss_pred cCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC
Q psy10990 295 TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD 359 (486)
Q Consensus 295 ~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~ 359 (486)
++.++.|.. -..+|+.+++-||.-|| +|+..-+.+-|+
T Consensus 156 ---nmepd~LFe----------------tisQa~Lna~DRDalSG--------wGa~vyiI~kdk 193 (204)
T KOG0180|consen 156 ---NMEPDELFE----------------TISQALLNAVDRDALSG--------WGAVVYIITKDK 193 (204)
T ss_pred ---CCCHHHHHH----------------HHHHHHHhHhhhhhhcc--------CCeEEEEEccch
Confidence 344444332 23456677788899998 556665655554
No 89
>KOG0177|consensus
Probab=97.44 E-value=0.00015 Score=68.66 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=55.8
Q ss_pred eEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-cee---hhccc------hhhhHhHHhHhccCCCcccccccce
Q psy10990 158 TIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIA---VTVSS------IGFQKNAFLASKGYSGPTARKTGTT 227 (486)
Q Consensus 158 Tivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~---~~~A~------~~l~~nl~L~~le~~~~~aV~~GtT 227 (486)
|++||+-.|-|||||||-++.|-.+...+-+|++.++ ... ++.+| ..+.+|+.||.++++-..+....+.
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 7999999999999999999999999999999999974 222 33333 3447899999998876555544444
Q ss_pred ee
Q psy10990 228 IV 229 (486)
Q Consensus 228 iI 229 (486)
.+
T Consensus 83 Ft 84 (200)
T KOG0177|consen 83 FT 84 (200)
T ss_pred HH
Confidence 43
No 90
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=97.23 E-value=0.00023 Score=67.40 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=65.5
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEec----CeEEEEEeCCCCcCeeeecCCcceEEEecC--eEEEEecCchHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFA----DGVVLGADTRATDDTIVAEKNCQKIHYMAK--NIYCCGAGTAADTQ 278 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~k----dGVVlAaDtr~t~g~li~~~s~~KI~~I~~--~i~~~gSGs~aD~~ 278 (486)
+..++++|+.++. +.++.....+....+. -.+++ +|.. ..+.+++.++. +.+ +....|||+.....
T Consensus 61 l~~~~~~y~~~~~-~~~a~l~~~l~~~~~~~~l~~~~lv-~d~~-~ly~id~~G~~-----~~~~~~~~a~GSGs~~a~g 132 (172)
T PRK05456 61 FEAKLEEHQGNLL-RAAVELAKDWRTDRYLRRLEAMLIV-ADKE-HSLIISGNGDV-----IEPEDGIIAIGSGGNYALA 132 (172)
T ss_pred HHHHHHHccCccH-HHHHHHHHHHHhccCCCccEEEEEE-EcCC-cEEEECCCCcE-----eccCCCeEEEecCHHHHHH
Confidence 4667888885442 2222222222233333 23444 4542 44455555543 233 78999999999999
Q ss_pred HHHHHHH-HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 279 VTTDLIA-SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 279 vL~~~lr-~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.|++.++ .+ - ||++|+++||.+++.||.+||+++++
T Consensus 133 ~ld~~y~~~~-----------------------------m-eA~~la~kai~~A~~Rd~~sg~~i~v 169 (172)
T PRK05456 133 AARALLENTD-----------------------------L-SAEEIAEKALKIAADICIYTNHNITI 169 (172)
T ss_pred HHHHhhhcCC-----------------------------C-CHHHHHHHHHHHHHHhCeeCCCcEEE
Confidence 9998552 11 1 68899999999999999999998764
No 91
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.002 Score=59.97 Aligned_cols=40 Identities=25% Similarity=0.120 Sum_probs=37.7
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS 193 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~ 193 (486)
.++|||++++=+|=|++|+|...|.|+.|.-.+.+|+-.+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl 41 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRL 41 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHH
Confidence 4799999999999999999999999999999999999874
No 92
>KOG0178|consensus
Probab=96.23 E-value=0.0058 Score=59.11 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=73.3
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhHhHHh----HhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQKNAFL----ASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~nl~L----~~le~~~~~a 221 (486)
.+++--|.+|+..+|||||+++.|.|.--.=.+-..+||..++ .++...|| ..+.+++++ |...++.+.+
T Consensus 27 ais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP 106 (249)
T KOG0178|consen 27 AISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIP 106 (249)
T ss_pred HHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3566679999999999999999999877777778889999974 66665555 223333433 3345665554
Q ss_pred ccccceeeE-EE--e----------cCeEEEEEeCCCCcCeee--ecCCcceEEEecCeEEEEecCchHHHHHHHH
Q psy10990 222 RKTGTTIVG-AI--F----------ADGVVLGADTRATDDTIV--AEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282 (486)
Q Consensus 222 V~~GtTiIg-I~--~----------kdGVVlAaDtr~t~g~li--~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~ 282 (486)
...--+-++ ++ | -..+-.|+|.+....++. ++++.. +=+-.|.+..+.++...|.+
T Consensus 107 ~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~-----gWka~ciG~N~~Aa~s~Lkq 177 (249)
T KOG0178|consen 107 CEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYG-----GWKATCIGANSGAAQSMLKQ 177 (249)
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcc-----ccceeeeccchHHHHHHHHh
Confidence 443322221 11 0 123555788776544433 333221 11234445555555555544
No 93
>KOG0184|consensus
Probab=95.91 E-value=0.039 Score=53.89 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=48.1
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
++-.|+|.+|++++|||||++|+--|+--|+-..| .||+.+| ++.++.|| +.+ ..+..-|+-+|+.+.+
T Consensus 30 Aven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn-~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP 108 (254)
T KOG0184|consen 30 AVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSN-ERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIP 108 (254)
T ss_pred HHhcCCcEEEEecCCeEEEEEeeeecccccccCCC-CceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 34578899999999999999999888877776544 5777776 44454444 112 2235556666776665
Q ss_pred c
Q psy10990 222 R 222 (486)
Q Consensus 222 V 222 (486)
.
T Consensus 109 ~ 109 (254)
T KOG0184|consen 109 G 109 (254)
T ss_pred h
Confidence 5
No 94
>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []. This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....
Probab=95.73 E-value=0.0059 Score=43.81 Aligned_cols=33 Identities=45% Similarity=0.761 Sum_probs=10.6
Q ss_pred ccCcCCCCccccCCceeeeeEEE-EEEEeeeEEE
Q psy10990 448 VKGKKDGDYRFKRGTTALLSTQR-IPIVVESEQV 480 (486)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 480 (486)
.-..+++.|+|++|||+||+|.. .++.|..|.|
T Consensus 3 ~kg~r~~~Ykf~~GTTaVL~e~V~~~~~v~eE~V 36 (38)
T PF12465_consen 3 EKGERQGSYKFKRGTTAVLKEKVPLKLDVVEETV 36 (38)
T ss_dssp -----SS-----TT-S-EEEEEEE----------
T ss_pred cCcccccccccCCCceeeEEEEeccEeEEEEEEE
Confidence 44567899999999999999999 5565655543
No 95
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=95.72 E-value=0.61 Score=44.95 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=43.1
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN 435 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd 435 (486)
+.+...|+++|++.|+++++..+..++|+.+.......+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 66778999999999999999999999999987776666788888877654
No 96
>KOG0863|consensus
Probab=93.34 E-value=0.3 Score=48.19 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=72.4
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhhHhHH----hHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQKNAF----LASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~~nl~----L~~le~~~~~ 220 (486)
++++.|.++||++-+.-.||.|=.|+... .+..-+||+++| ++.++.|| ..++++++ -++.-++++.
T Consensus 27 EavkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~ 103 (264)
T KOG0863|consen 27 EAVKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPL 103 (264)
T ss_pred HHHhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcc
Confidence 34688999999999999999998887654 234568999997 55555555 33444443 3334455555
Q ss_pred cccccceeeEEEec------------Ce-EEEEEeCCCC-cCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIFA------------DG-VVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 221 aV~~GtTiIgI~~k------------dG-VVlAaDtr~t-~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
+|..-..-++-+.. =| .|.+.|..++ ..-.-+.+++ .+-+-...||-+.++--+|++.+
T Consensus 104 pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v-----~e~~g~sIGsRSQsARTyLEr~~ 176 (264)
T KOG0863|consen 104 PVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNV-----FECKGMSIGSRSQSARTYLERNL 176 (264)
T ss_pred cHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccE-----EEEeeeecccchhhHHHHHHHHH
Confidence 55544444432211 13 4445776543 2222233322 22233445666666666666643
No 97
>KOG0183|consensus
Probab=91.65 E-value=0.066 Score=52.14 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=58.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc----hhh-h----HhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS----IGF-Q----KNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~----~~l-~----~nl~L~~le~~~~~ 220 (486)
++++.|+|.||++-++.||||.+++ |-...--+++.+||..+| +..++-|| ..+ . -++.-|++..+.|.
T Consensus 25 EAvrkGstaVgvrg~~~vvlgvEkk-Sv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpv 103 (249)
T KOG0183|consen 25 EAVRKGSTAVGVRGNNCVVLGVEKK-SVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPV 103 (249)
T ss_pred HHHhcCceEEEeccCceEEEEEeec-chhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCc
Confidence 3468999999999999999999997 556677778899999998 77777766 111 1 13556667777777
Q ss_pred cccccceeeE
Q psy10990 221 ARKTGTTIVG 230 (486)
Q Consensus 221 aV~~GtTiIg 230 (486)
++.--+..|+
T Consensus 104 tveyitRyiA 113 (249)
T KOG0183|consen 104 TVEYITRYIA 113 (249)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 98
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.35 E-value=16 Score=36.66 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=42.7
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN 435 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd 435 (486)
+.+..+|.+.|.+.++++++.++...+|..+...-...+..+++..++++
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 45667888999999999999999999999988676677788999988764
No 99
>PF08395 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013604 This family includes a number of gustatory and odorant receptors mainly from insect species such as Anopheles gambiae (African malaria mosquito) and Drosophila melanogaster (Fruit fly). They are classified as G-protein-coupled receptors (GPCRs), or seven-transmembrane receptors. They show high sequence divergence, consistent with an ancient origin for the family [, ]. ; GO: 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=80.68 E-value=1.8 Score=42.25 Aligned_cols=47 Identities=34% Similarity=0.651 Sum_probs=41.9
Q ss_pred hhhhhhhhccccceeEEEeecccchhhhhhhhhhhhHHHHHHHHHhhcc
Q psy10990 70 VKFFLLELRDRKFKFEIFRLFSLDFDTFLSYKMMGFISTYIVILIQESY 118 (486)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (486)
++.|++.+..++.+|-...+|.+|+..++ ++.+.+.+|++||+|=..
T Consensus 324 l~~f~~ql~~~~~~~ta~g~f~ld~~ll~--~~~~~i~TYliILiQF~~ 370 (372)
T PF08395_consen 324 LELFSLQLQHQPLKFTACGFFDLDRSLLF--SIIGAITTYLIILIQFDI 370 (372)
T ss_pred HHHHHHHHHhcCCceEEeeEEEECHHHHH--HHHHHHHHHHHhhhheec
Confidence 67889999999999999999999988775 689999999999999543
No 100
>KOG0181|consensus
Probab=75.23 E-value=2.2 Score=41.28 Aligned_cols=70 Identities=24% Similarity=0.237 Sum_probs=45.0
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-cceehhccc-----hhh----hHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-DLIAVTVSS-----IGF----QKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV 222 (486)
++-|.|-||++-.||||||++.. ..-..+-...+.||..+ +++...-++ +.+ ....+-|..-|+++.++
T Consensus 29 v~~G~~SvGi~A~nGvVlatekk-~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt 107 (233)
T KOG0181|consen 29 VVNGQTSVGIKAANGVVLATEKK-DVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPT 107 (233)
T ss_pred HhCCCCceeeeecCceEEEeccC-CCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCH
Confidence 56788999999999999999985 33455566777888885 355544444 111 11233455556666554
Q ss_pred c
Q psy10990 223 K 223 (486)
Q Consensus 223 ~ 223 (486)
.
T Consensus 108 ~ 108 (233)
T KOG0181|consen 108 T 108 (233)
T ss_pred H
Confidence 3
No 101
>KOG3361|consensus
Probab=69.60 E-value=5.1 Score=36.60 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=40.0
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHH
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKL 408 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~L 408 (486)
..+|-+|.....+|-..|.|+..+.+-+-..|-.++|+|||.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 46788999999999999999999999999999999999999863
No 102
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=62.29 E-value=3.8 Score=29.49 Aligned_cols=36 Identities=31% Similarity=0.611 Sum_probs=25.4
Q ss_pred cCCcccccccccCCCceeeccCccccccCCcccCCccccccccchh
Q psy10990 24 VPGCHRFLPRAYCPDFHVLCGNHQAIEECPICTGGVSWLSPLELGL 69 (486)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (486)
+|.|+.-|-...- ....|..||-|.| -|+.+-|+--
T Consensus 2 CP~C~~~l~~~~~--------~~~~id~C~~C~G--~W~d~~el~~ 37 (41)
T PF13453_consen 2 CPRCGTELEPVRL--------GDVEIDVCPSCGG--IWFDAGELEK 37 (41)
T ss_pred cCCCCcccceEEE--------CCEEEEECCCCCe--EEccHHHHHH
Confidence 5888886654332 3467889999976 5998877643
No 103
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=37.99 E-value=18 Score=43.84 Aligned_cols=20 Identities=40% Similarity=0.938 Sum_probs=16.6
Q ss_pred cCCcccccccccCCCceeeccCcc
Q psy10990 24 VPGCHRFLPRAYCPDFHVLCGNHQ 47 (486)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~ 47 (486)
||.|+...|..+||. ||.|.
T Consensus 670 CPkCG~~t~~~fCP~----CGs~t 689 (1337)
T PRK14714 670 CPSCGTETYENRCPD----CGTHT 689 (1337)
T ss_pred CCCCCCccccccCcc----cCCcC
Confidence 599999999999996 66664
No 104
>KOG4739|consensus
Probab=37.35 E-value=14 Score=36.82 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=21.9
Q ss_pred Ccccccccc---cCCCceeeccCccc---cccCCcccCC
Q psy10990 26 GCHRFLPRA---YCPDFHVLCGNHQA---IEECPICTGG 58 (486)
Q Consensus 26 ~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~ 58 (486)
+||+|-+.. .--=+||.|++|-- -+.||+|.--
T Consensus 8 ~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ 46 (233)
T KOG4739|consen 8 KCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKS 46 (233)
T ss_pred cccccCCCCceeeeechhhhhhhhcccCCccccccccce
Confidence 899886610 01126999999853 3599999653
No 105
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=32 Score=33.79 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCC
Q psy10990 157 TTIVGAIFADGVVLGADTRATDD 179 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G 179 (486)
|=-||++-+.|.|.++|||+.+|
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAG 24 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAG 24 (255)
T ss_pred ceEEEEEeccceEEecccccccC
Confidence 34689999999999999998888
No 106
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=30.91 E-value=30 Score=36.92 Aligned_cols=29 Identities=41% Similarity=0.882 Sum_probs=20.4
Q ss_pred CCCceeeccCccccccCCccc-----CCcccccccc
Q psy10990 36 CPDFHVLCGNHQAIEECPICT-----GGVSWLSPLE 66 (486)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 66 (486)
|..+|+..+ +.-.+||.|. +|--|+.||-
T Consensus 250 c~~~~~~~~--~~~~~C~~c~~~~~~~GPlW~G~l~ 283 (382)
T PRK04338 250 CLYREEVEG--LPPEECPVCGGKFGTAGPLWLGPLH 283 (382)
T ss_pred CCcEEEecC--CCCCCCCCCCCcceeccccccCccC
Confidence 556666665 4456899996 5778888873
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.45 E-value=19 Score=36.15 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=25.1
Q ss_pred cCCcccccccccCCCceeeccCccccccCCcccCCcccc
Q psy10990 24 VPGCHRFLPRAYCPDFHVLCGNHQAIEECPICTGGVSWL 62 (486)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (486)
|.|||--||+..--+.-. + .-|..||.|.-=+-|.
T Consensus 200 C~GC~m~l~~~~~~~V~~--~--d~iv~CP~CgRILy~~ 234 (239)
T COG1579 200 CGGCHMKLPSQTLSKVRK--K--DEIVFCPYCGRILYYD 234 (239)
T ss_pred ccCCeeeecHHHHHHHhc--C--CCCccCCccchHHHhh
Confidence 689999999876555443 4 4588999997555443
No 108
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=25.84 E-value=37 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=13.8
Q ss_pred ccCCccc-----CCcccccccc
Q psy10990 50 EECPICT-----GGVSWLSPLE 66 (486)
Q Consensus 50 ~~~~~~~-----~~~~~~~~~~ 66 (486)
+.||.|. +|--|+.||-
T Consensus 253 ~~C~~c~~~~~~~GPlW~G~l~ 274 (374)
T TIGR00308 253 GRCKECGGEYHLAGPLYAGPLH 274 (374)
T ss_pred CCCCCCCCcceeecCcccCccC
Confidence 5799997 6888998875
No 109
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=25.12 E-value=21 Score=29.36 Aligned_cols=20 Identities=55% Similarity=1.097 Sum_probs=15.5
Q ss_pred hhcccccCCcccccccccCCCceeeccC
Q psy10990 18 AKIKCCVPGCHRFLPRAYCPDFHVLCGN 45 (486)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (486)
|-|+|..++|++. ||+.|+-
T Consensus 48 a~i~C~~~~C~~~--------fH~~CA~ 67 (90)
T PF13771_consen 48 ACIGCSHPGCSRS--------FHVPCAR 67 (90)
T ss_pred eEEEEeCCCCCcE--------EChHHHc
Confidence 4578888889874 8998874
No 110
>PF14828 Amnionless: Amnionless
Probab=24.27 E-value=98 Score=33.77 Aligned_cols=14 Identities=43% Similarity=0.864 Sum_probs=9.5
Q ss_pred cCCcccCCccccccc
Q psy10990 51 ECPICTGGVSWLSPL 65 (486)
Q Consensus 51 ~~~~~~~~~~~~~~~ 65 (486)
-|||| |++-++.+-
T Consensus 228 CC~iC-Ga~v~~~~~ 241 (437)
T PF14828_consen 228 CCPIC-GAIVTLEYS 241 (437)
T ss_pred chhhc-ceEEEEeec
Confidence 39999 556666555
No 111
>PF08063 PADR1: PADR1 (NUC008) domain; InterPro: IPR012982 This domain is found in poly(ADP-ribose)-synthetases []. The function of this domain is unknown.; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0005634 nucleus; PDB: 2JVN_A 4DQY_E 2RIQ_A.
Probab=20.66 E-value=35 Score=26.40 Aligned_cols=12 Identities=58% Similarity=1.348 Sum_probs=6.6
Q ss_pred ccccCCcccCCc
Q psy10990 48 AIEECPICTGGV 59 (486)
Q Consensus 48 ~~~~~~~~~~~~ 59 (486)
|++.||.|.||-
T Consensus 13 al~~Cp~C~~~~ 24 (55)
T PF08063_consen 13 ALEPCPKCKGGQ 24 (55)
T ss_dssp EE---SSSSE-E
T ss_pred CCCCCCCCCCCe
Confidence 678999999974
Done!