Query psy10990
Match_columns 486
No_of_seqs 310 out of 1855
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 15:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_H Proteasome component PU 100.0 6.3E-48 2.2E-52 382.5 26.3 249 137-483 10-259 (261)
2 3unf_H Proteasome subunit beta 100.0 1.6E-43 5.4E-48 345.6 27.0 222 226-476 1-222 (234)
3 1ryp_I 20S proteasome; multica 100.0 5.7E-41 1.9E-45 324.4 26.1 219 226-473 1-220 (222)
4 1iru_I 20S proteasome; cell cy 100.0 3.1E-41 1.1E-45 328.9 24.2 220 226-474 1-220 (234)
5 1yar_A Proteasome alpha subuni 100.0 1.8E-39 6.1E-44 315.5 21.4 218 205-449 15-233 (233)
6 1iru_B 20S proteasome; cell cy 100.0 1E-39 3.6E-44 317.1 19.4 220 205-451 12-231 (233)
7 1q5r_H Proteasome beta-type su 100.0 2.8E-39 9.4E-44 325.6 21.0 233 124-451 21-281 (294)
8 3nzj_K Proteasome component PR 100.0 5.8E-39 2E-43 322.2 22.8 231 121-452 44-276 (287)
9 1iru_N 20S proteasome; cell cy 100.0 9.8E-39 3.4E-43 307.3 22.5 214 219-458 2-218 (219)
10 1ryp_A 20S proteasome; multica 100.0 2.7E-39 9.1E-44 316.3 18.2 219 205-450 10-237 (243)
11 1ryp_C 20S proteasome; multica 100.0 7.2E-39 2.4E-43 313.2 20.4 222 205-451 12-240 (244)
12 2jay_A Proteasome; hydrolase; 100.0 9.8E-39 3.4E-43 321.2 21.3 233 124-451 20-273 (291)
13 1ryp_N 20S proteasome; multica 100.0 2.9E-38 9.8E-43 307.2 23.0 215 219-459 2-229 (233)
14 1iru_C 20S proteasome; cell cy 100.0 1.2E-38 4.1E-43 315.3 20.2 222 205-451 12-239 (261)
15 1ryp_F 20S proteasome; multica 100.0 1.4E-38 4.9E-43 309.3 19.5 216 205-449 12-233 (233)
16 1ryp_E 20S proteasome; multica 100.0 9.8E-39 3.3E-43 311.9 18.1 223 205-450 7-233 (242)
17 1iru_E 20S proteasome; cell cy 100.0 9.9E-39 3.4E-43 311.9 18.1 224 205-450 15-239 (241)
18 1yar_H Proteasome beta subunit 100.0 5.1E-38 1.7E-42 302.6 22.7 204 219-451 2-206 (217)
19 1ryp_D 20S proteasome; multica 100.0 4E-38 1.4E-42 307.6 20.8 218 205-450 9-232 (241)
20 3h4p_a Proteasome subunit beta 100.0 5.5E-38 1.9E-42 302.9 21.4 201 225-453 1-203 (219)
21 1iru_A 20S proteasome; cell cy 100.0 3.1E-38 1.1E-42 309.3 19.0 219 205-450 16-240 (246)
22 1j2q_H Proteasome beta subunit 100.0 1.4E-37 4.8E-42 295.5 22.9 198 226-451 1-199 (202)
23 1iru_F 20S proteasome; cell cy 100.0 3.7E-38 1.3E-42 312.4 19.1 220 205-452 13-236 (263)
24 3h4p_A Proteasome subunit alph 100.0 3.3E-38 1.1E-42 313.2 18.4 221 205-453 19-241 (264)
25 1ryp_G 20S proteasome; multica 100.0 9.6E-38 3.3E-42 306.0 20.5 217 205-447 11-233 (244)
26 1iru_G 20S proteasome; cell cy 100.0 3.2E-38 1.1E-42 311.0 17.0 222 205-452 14-239 (254)
27 1iru_D 20S proteasome; cell cy 100.0 5.5E-38 1.9E-42 308.2 18.3 219 205-452 10-232 (248)
28 1j2p_A Alpha-ring, proteasome 100.0 9.9E-38 3.4E-42 305.9 20.0 218 205-450 15-234 (246)
29 1g0u_M Proteasome component PR 100.0 3E-37 1E-41 306.3 22.6 216 218-459 34-262 (266)
30 1iru_L 20S proteasome; cell cy 100.0 5.2E-37 1.8E-41 292.0 22.7 198 226-451 1-198 (204)
31 1iru_H 20S proteasome; cell cy 100.0 2.1E-36 7.2E-41 288.0 24.1 197 226-451 1-200 (205)
32 1ryp_L 20S proteasome; multica 100.0 1.9E-36 6.5E-41 290.0 22.6 195 226-448 1-196 (212)
33 1ryp_B 20S proteasome; multica 100.0 6.7E-37 2.3E-41 300.7 19.7 219 205-450 12-248 (250)
34 1ryp_K 20S proteasome; multica 100.0 3.1E-36 1.1E-40 285.2 22.5 193 226-444 2-196 (198)
35 3nzj_F Proteasome component C1 100.0 7.7E-37 2.6E-41 307.0 18.7 215 205-445 15-235 (288)
36 1ryp_H 20S proteasome; multica 100.0 8.8E-36 3E-40 284.0 22.4 193 219-441 3-196 (205)
37 1iru_M 20S proteasome; cell cy 100.0 2E-35 7E-40 282.8 24.5 193 220-440 4-206 (213)
38 3unf_N Proteasome subunit beta 100.0 1.4E-35 4.6E-40 281.0 22.4 194 226-450 1-198 (199)
39 1ryp_M 20S proteasome; multica 100.0 5.3E-35 1.8E-39 282.4 23.8 194 219-440 3-215 (222)
40 1iru_J 20S proteasome; cell cy 100.0 1.6E-34 5.5E-39 275.0 24.2 191 221-439 4-197 (205)
41 3mi0_A Proteasome subunit alph 100.0 7.9E-35 2.7E-39 286.6 22.3 203 214-452 17-237 (248)
42 1iru_K 20S proteasome; cell cy 100.0 1.4E-34 4.9E-39 274.6 23.0 191 226-443 2-194 (201)
43 1q5q_H Proteasome beta-type su 100.0 1.1E-34 3.8E-39 282.6 22.7 201 226-451 1-216 (235)
44 1ryp_J 20S proteasome; multica 100.0 3.6E-34 1.2E-38 272.4 24.8 191 220-439 3-196 (204)
45 1q5q_A Proteasome alpha-type s 100.0 1.6E-34 5.4E-39 285.9 20.4 212 205-452 7-235 (259)
46 2z3b_A ATP-dependent protease 100.0 2.3E-27 7.8E-32 222.3 18.8 170 223-432 3-179 (180)
47 1g3k_A ATP-dependent protease 99.9 5E-27 1.7E-31 218.4 19.2 168 226-433 1-173 (174)
48 1m4y_A ATP-dependent protease 99.9 4.5E-27 1.5E-31 218.0 18.8 167 226-432 1-171 (171)
49 1ryp_H 20S proteasome; multica 99.7 1.9E-18 6.4E-23 164.2 4.7 162 150-344 3-184 (205)
50 3unf_H Proteasome subunit beta 99.7 3.4E-18 1.2E-22 166.6 4.1 157 157-345 1-176 (234)
51 1yar_H Proteasome beta subunit 99.7 4.4E-18 1.5E-22 163.4 4.2 163 150-344 2-183 (217)
52 1iru_N 20S proteasome; cell cy 99.7 1.1E-17 3.7E-22 160.5 4.8 165 150-344 2-189 (219)
53 1iru_J 20S proteasome; cell cy 99.7 1.8E-17 6.2E-22 157.3 5.7 161 153-344 5-187 (205)
54 3h4p_a Proteasome subunit beta 99.7 9.9E-17 3.4E-21 154.3 9.2 157 156-344 1-179 (219)
55 1ryp_J 20S proteasome; multica 99.7 2.9E-17 1E-21 155.8 4.9 161 152-343 4-185 (204)
56 1ryp_N 20S proteasome; multica 99.7 1.2E-17 4.1E-22 161.9 2.2 168 150-344 2-197 (233)
57 1iru_M 20S proteasome; cell cy 99.7 1E-16 3.5E-21 153.0 7.8 169 152-343 5-194 (213)
58 1yar_A Proteasome alpha subuni 99.7 4.2E-17 1.4E-21 158.0 4.9 159 151-343 29-211 (233)
59 1iru_C 20S proteasome; cell cy 99.7 3.4E-17 1.2E-21 161.6 4.2 162 151-343 26-212 (261)
60 1ryp_M 20S proteasome; multica 99.7 1.2E-16 4.1E-21 153.9 7.8 172 152-344 5-204 (222)
61 1iru_I 20S proteasome; cell cy 99.7 1.4E-16 4.6E-21 155.0 8.2 157 157-345 1-176 (234)
62 1ryp_A 20S proteasome; multica 99.6 6.1E-17 2.1E-21 157.9 5.5 166 151-343 24-215 (243)
63 1ryp_I 20S proteasome; multica 99.6 4.9E-17 1.7E-21 156.7 4.3 157 157-345 1-176 (222)
64 1iru_B 20S proteasome; cell cy 99.6 4.1E-17 1.4E-21 158.0 3.6 159 151-343 26-208 (233)
65 3unf_N Proteasome subunit beta 99.6 1E-16 3.6E-21 151.2 5.8 156 157-343 1-174 (199)
66 1ryp_C 20S proteasome; multica 99.6 4.1E-17 1.4E-21 159.1 2.8 161 151-343 26-211 (244)
67 1g0u_M Proteasome component PR 99.6 3.6E-17 1.2E-21 162.0 2.2 168 150-344 35-230 (266)
68 1iru_H 20S proteasome; cell cy 99.6 1E-16 3.4E-21 152.2 3.9 156 157-344 1-176 (205)
69 1iru_A 20S proteasome; cell cy 99.6 9.1E-17 3.1E-21 156.9 3.6 160 152-343 31-216 (246)
70 1iru_L 20S proteasome; cell cy 99.6 4.6E-16 1.6E-20 147.5 8.3 155 157-343 1-175 (204)
71 1j2q_H Proteasome beta subunit 99.6 1.2E-16 4.2E-21 151.2 4.3 155 157-343 1-176 (202)
72 1iru_E 20S proteasome; cell cy 99.6 1.9E-16 6.4E-21 154.3 5.2 159 151-343 29-216 (241)
73 1ryp_L 20S proteasome; multica 99.6 1.6E-16 5.6E-21 151.6 4.3 155 157-343 1-176 (212)
74 1ryp_E 20S proteasome; multica 99.6 2.1E-16 7.3E-21 153.8 4.6 159 151-343 21-210 (242)
75 2z3b_A ATP-dependent protease 99.6 2.3E-15 7.9E-20 140.7 11.2 153 154-345 3-177 (180)
76 1ryp_B 20S proteasome; multica 99.6 2.1E-16 7.1E-21 154.9 3.7 159 151-343 26-210 (250)
77 1iru_K 20S proteasome; cell cy 99.6 2E-16 7E-21 149.6 3.6 156 157-344 2-180 (201)
78 1ryp_G 20S proteasome; multica 99.6 2E-16 6.7E-21 154.7 2.2 162 151-342 25-210 (244)
79 1ryp_F 20S proteasome; multica 99.6 6.8E-16 2.3E-20 149.6 5.7 160 152-343 27-211 (233)
80 1j2p_A Alpha-ring, proteasome 99.6 3.2E-16 1.1E-20 153.1 3.5 158 151-342 29-209 (246)
81 1iru_F 20S proteasome; cell cy 99.6 9.1E-16 3.1E-20 151.7 6.0 160 151-343 27-211 (263)
82 1ryp_K 20S proteasome; multica 99.6 2.8E-16 9.4E-21 148.2 2.1 156 157-344 2-181 (198)
83 3h4p_A Proteasome subunit alph 99.6 3.1E-16 1.1E-20 155.3 1.5 157 152-343 34-214 (264)
84 1q5q_H Proteasome beta-type su 99.6 7.8E-16 2.7E-20 149.5 4.2 152 157-340 1-183 (235)
85 1iru_G 20S proteasome; cell cy 99.6 3.1E-16 1.1E-20 154.2 0.3 157 151-340 28-209 (254)
86 1ryp_D 20S proteasome; multica 99.6 2E-15 6.9E-20 147.0 6.0 160 151-342 23-208 (241)
87 1m4y_A ATP-dependent protease 99.5 3.6E-15 1.2E-19 137.8 6.0 148 157-345 1-169 (171)
88 1iru_D 20S proteasome; cell cy 99.5 9.3E-16 3.2E-20 150.2 2.0 159 151-343 24-207 (248)
89 3nzj_F Proteasome component C1 99.5 1.9E-15 6.5E-20 151.6 1.9 159 151-339 29-211 (288)
90 1g3k_A ATP-dependent protease 99.5 1.3E-14 4.3E-19 134.7 6.3 154 157-345 1-170 (174)
91 1q5q_A Proteasome alpha-type s 99.4 3.4E-14 1.2E-18 140.2 4.6 153 151-343 22-207 (259)
92 3mi0_A Proteasome subunit alph 99.4 9.5E-14 3.2E-18 136.4 7.3 143 150-332 21-192 (248)
93 3nzj_H Proteasome component PU 97.6 9.3E-06 3.2E-10 80.1 -0.2 109 205-345 88-205 (261)
94 3nzj_K Proteasome component PR 97.3 0.00012 4.3E-09 73.0 3.4 108 205-344 134-252 (287)
95 2jay_A Proteasome; hydrolase; 96.0 0.0014 4.6E-08 65.6 0.8 106 205-340 116-240 (291)
96 1q5r_H Proteasome beta-type su 95.8 0.0044 1.5E-07 62.0 3.4 39 218-256 58-96 (294)
97 2bai_A Genome polyprotein; zin 44.2 3.4 0.00012 27.2 -0.7 15 43-57 10-24 (32)
98 2jm3_A Hypothetical protein; z 26.4 17 0.00059 29.6 0.6 9 21-29 6-14 (91)
99 2h8b_A Insulin-like 3; insulin 24.4 11 0.00037 23.8 -0.8 18 20-37 8-25 (26)
100 2lau_A THAP domain-containing 21.7 24 0.00082 27.6 0.6 9 20-28 5-13 (81)
No 1
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.3e-48 Score=382.52 Aligned_cols=249 Identities=51% Similarity=0.819 Sum_probs=211.8
Q ss_pred HHHHHHHcCCCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccchhhhHhHHhHhccC
Q psy10990 137 EINAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGY 216 (486)
Q Consensus 137 ~~n~~l~~~g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~~~l~~nl~L~~le~ 216 (486)
.||+.|.++|+++|+++++|||+||++++||||||||+|+|.|.+|.+++++||++
T Consensus 10 ~rn~~~~~~~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~------------------------ 65 (261)
T 3nzj_H 10 QRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHR------------------------ 65 (261)
T ss_dssp --------------------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEE------------------------
T ss_pred hhHHHHHhcCCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEE------------------------
Confidence 57888889999999999999999999999999999999999999999888887766
Q ss_pred CCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 217 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 217 ~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
|++|+++++||..+|++.+.+.++.+++.|++.++
T Consensus 66 ---------------------------------------------I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 66 ---------------------------------------------ISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp ---------------------------------------------EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------------EcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 44778889999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeec
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTV 376 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~ 376 (486)
++++++.+++.+++.++.+. +||++++|+||||+.||+||++||+|++.++
T Consensus 101 ~~~~v~~~a~~l~~~l~~~~-----------------------------~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~ 151 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKYQ-----------------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVG 151 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-----------------------------TCSCEEEEEEEEETTEEEEEEECTTSCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhc-----------------------------CcccEEEEEEEEeCCCCEEEEECCCccEEec
Confidence 99999999999999887665 7999999999999999999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCccccccccCcCCCC
Q psy10990 377 PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYEIANVKGKKDGD 455 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~eI~~~~~~~~~~ 455 (486)
+++|+|+|++.++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++| +++++++.+++.|..+++.
T Consensus 152 ~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~~~~~ 231 (261)
T 3nzj_H 152 YYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKS 231 (261)
T ss_dssp SEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSC
T ss_pred CeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccccCCceeeeeEEEEEEEeeeEEEEec
Q psy10990 456 YRFKRGTTALLSTQRIPIVVESEQVIHT 483 (486)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (486)
|+||+|+|+||++..+++.+..|.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (261)
T 3nzj_H 232 YKFPRGTTAVLKESIVNICDIQEEQVDI 259 (261)
T ss_dssp CCCCTTCSCEEEEEEECCCC--------
T ss_pred cCCCCCCcceeeEEEEEeeeeeEEeeec
Confidence 9999999999999999999887765543
No 2
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.6e-43 Score=345.64 Aligned_cols=222 Identities=51% Similarity=0.907 Sum_probs=213.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 58999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++++|+++ +||++++++||||++||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs 131 (234)
T 3unf_H 81 RILRQTLFRYQ-----------------------------GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQ 131 (234)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTH
T ss_pred HHHHHHHHhcC-----------------------------CCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCc
Confidence 99999988766 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCCccccCCceee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~~~~~~~~~~~ 465 (486)
++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++|+++++++++++.|.++++.|+|++|+|+|
T Consensus 132 ~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~~~~~~~~~~~~~~~~ 211 (234)
T 3unf_H 132 GAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGRYRFAPGTTPV 211 (234)
T ss_dssp HHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCCCCCCCCCCCTTCSCE
T ss_pred hhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccccccccccCCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEee
Q psy10990 466 LSTQRIPIVVE 476 (486)
Q Consensus 466 ~~~~~~~~~~~ 476 (486)
|++..+++.+|
T Consensus 212 ~~~~~~~~~~~ 222 (234)
T 3unf_H 212 LTREVRPLTLE 222 (234)
T ss_dssp EEEEEEEC---
T ss_pred eeEEEEEeeEE
Confidence 99999999774
No 3
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=5.7e-41 Score=324.38 Aligned_cols=219 Identities=54% Similarity=0.894 Sum_probs=211.1
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++++|.+. +||++++|+||+|+.||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs 131 (222)
T 1ryp_I 81 QMLKQHLFKYQ-----------------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGS 131 (222)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTH
T ss_pred HHHHHHHhhcC-----------------------------CCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCH
Confidence 99999987665 8999999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCccccccccCcCCCCccccCCcee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYEIANVKGKKDGDYRFKRGTTA 464 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~eI~~~~~~~~~~~~~~~~~~~ 464 (486)
++++++||+.|+++||+|||++++++||+.++++|..++++++|++|+++| +++++++++++.|.+++..|.||+|+|+
T Consensus 132 ~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (222)
T 1ryp_I 132 LAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA 211 (222)
T ss_dssp HHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSC
T ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCcccccccCcccCCCcee
Confidence 999999999999999999999999999999999999899999999999999 9999999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy10990 465 LLSTQRIPI 473 (486)
Q Consensus 465 ~~~~~~~~~ 473 (486)
+|+|..++|
T Consensus 212 ~~~~~~~~~ 220 (222)
T 1ryp_I 212 VLKESIVNI 220 (222)
T ss_dssp EEEEEECCC
T ss_pred eeeeeeEec
Confidence 999987665
No 4
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=3.1e-41 Score=328.95 Aligned_cols=220 Identities=65% Similarity=1.115 Sum_probs=212.4
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 58999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++.+|.++ +||++++++||||++||+||++||+|++.+++++|+|+|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs 131 (234)
T 1iru_I 81 RMLKQMLFRYR-----------------------------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGS 131 (234)
T ss_dssp HHHHHHHHHTT-----------------------------TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTH
T ss_pred HHHHHHHHhcC-----------------------------CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCch
Confidence 99999988776 7999999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCCccccCCceee
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~~~~~~~~~~~ 465 (486)
+.++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++++++.|.+++..|+||+|||+|
T Consensus 132 ~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (234)
T 1iru_I 132 LAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAV 211 (234)
T ss_dssp HHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCCCCSCCCCCTTCSCB
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCccccccccCcccCCCceee
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy10990 466 LSTQRIPIV 474 (486)
Q Consensus 466 ~~~~~~~~~ 474 (486)
|+|..++|.
T Consensus 212 ~~~~~~~~~ 220 (234)
T 1iru_I 212 LTEKITPLE 220 (234)
T ss_dssp SCCCCCBCC
T ss_pred eEEEEEecc
Confidence 999887775
No 5
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.8e-39 Score=315.47 Aligned_cols=218 Identities=22% Similarity=0.349 Sum_probs=203.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.+. +...+.+||++|++++++++||..+|++.+.+.+
T Consensus 15 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~-~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 92 (233)
T 1yar_A 15 FSPDGRLFQVEYA-REAVKKGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA 92 (233)
T ss_dssp CCTTSCCHHHHHH-HHHHTTSCCEEEEEETTEEEEEECCCCCCTT-BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHH
T ss_pred ECcCCeeHHHHhH-HHHHhcCCcEEEEEECCEEEEEEeccCCccc-ccccccCeEEEecCCEEEEEeeCHHHHHHHHHHH
Confidence 5678999999994 6788999999999999999999999998874 5567889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .++ .|||++++|+||||+.||+|
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~------------------~~~------~rp~~v~~lvaG~D~~gp~L 148 (233)
T 1yar_A 93 RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQ------------------YGG------VRPYGVSLIFAGIDQIGPRL 148 (233)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------BTT------BCCCCEEEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC------------------cCC------cCcceEEEEEEEEeCCCCEE
Confidence 999999999999999999999999999998882 111 38999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~ 443 (486)
|.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++|. ++++++|++|+++| +++++++
T Consensus 149 y~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ 227 (233)
T 1yar_A 149 FDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQE 227 (233)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHH
T ss_pred EEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHH
Confidence 999999999999999999999999999999999999999999999999999999998 79999999999998 9999999
Q ss_pred cccccc
Q psy10990 444 EIANVK 449 (486)
Q Consensus 444 eI~~~~ 449 (486)
||+.++
T Consensus 228 ei~~~l 233 (233)
T 1yar_A 228 EVKKFL 233 (233)
T ss_dssp HHHTTC
T ss_pred HHHhhC
Confidence 998764
No 6
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1e-39 Score=317.12 Aligned_cols=220 Identities=17% Similarity=0.239 Sum_probs=204.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|. .+++++|+|+||++++||||+|+|++.+. .++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 89 (233)
T 1iru_B 12 FSPSGKLVQIEYA-LAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRA 89 (233)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEECSSCEEEEEECCCCC-SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCeEehhHhH-HHHHHcCCcEEEEEeCCEEEEEEEecCCc-cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHH
Confidence 6678999999994 67889999999999999999999999884 566677889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.++++++++++.|++ . +| .|||++++|++|||+.||+|
T Consensus 90 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~------------------~-~~-----~rP~~v~~lvaG~D~~gp~L 145 (233)
T 1iru_B 90 RKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ------------------S-GG-----VRPFGVSLLICGWNEGRPYL 145 (233)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------S-BT-----BCCCSEEEEEEEECSSSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC------------------c-CC-----CCCcEEEEEEEEEeCCCCeE
Confidence 999999999999999999999999999988882 1 11 38999999999999889999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
|++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++| .++++++|++|+++|+++++++|
T Consensus 146 y~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~e 224 (233)
T 1iru_B 146 FQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTE 224 (233)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHH
T ss_pred EEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHH
Confidence 99999999999999999999999999999999999999999999999999999999 67899999999999999999999
Q ss_pred cccccCc
Q psy10990 445 IANVKGK 451 (486)
Q Consensus 445 I~~~~~~ 451 (486)
|+.++..
T Consensus 225 i~~~~~~ 231 (233)
T 1iru_B 225 VKDYLAA 231 (233)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9988753
No 7
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.8e-39 Score=325.60 Aligned_cols=233 Identities=20% Similarity=0.206 Sum_probs=208.6
Q ss_pred ccchHHHHHHHHHHHHHHHHcCC-----CC--------CCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeee
Q psy10990 124 LSTSTIVQKALQSEINAFLASKG-----YS--------GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLL 190 (486)
Q Consensus 124 ~~~~~~~~~~~~~~~n~~l~~~g-----~~--------~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI 190 (486)
..+|||+ +||++.++++||... .+ +.+++++|||+|||+++||||||+|+|+|+|.+|.+++++||
T Consensus 21 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI 99 (294)
T 1q5r_H 21 SNLSSFT-DYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAV 99 (294)
T ss_dssp CTTSCHH-HHHTTTCGGGSTTCC-----------------CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCE
T ss_pred CCcccHH-HHHhhhCchhccccccccccCCCccccchhHHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceE
Confidence 5779999 999999999998542 22 345689999999999999999999999999999988877777
Q ss_pred eeecceehhccchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEe
Q psy10990 191 SYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG 270 (486)
Q Consensus 191 ~~~d~~~~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~g 270 (486)
++ |++++++++
T Consensus 100 ~~---------------------------------------------------------------------I~~~i~~~~ 110 (294)
T 1q5r_H 100 YV---------------------------------------------------------------------TDEYSAAGI 110 (294)
T ss_dssp EE---------------------------------------------------------------------EETTEEEEE
T ss_pred EE---------------------------------------------------------------------ECCcEEEEE
Confidence 55 457888899
Q ss_pred cCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccce
Q psy10990 271 AGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSA 350 (486)
Q Consensus 271 SGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gv 350 (486)
||..+|++.|.+.++.+++.|++.++++++++.+++.+++++|.+++. + .|||++
T Consensus 111 aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~------------~-------------~rp~~v 165 (294)
T 1q5r_H 111 AGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA------------A-------------MQGLAV 165 (294)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH------------H-------------TTTTCE
T ss_pred eecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhh------------h-------------cCCcce
Confidence 999999999999999999999999999999999999999999988732 0 289999
Q ss_pred eEEEEEEcCC-C-----ceEEEEccCCceeec--CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCC
Q psy10990 351 ALVLGGVDDT-G-----AHLFNIYPHGSSDTV--PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLG 422 (486)
Q Consensus 351 slLiaG~D~~-G-----p~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~ 422 (486)
++|++|||.. + |+||++||+|++.++ +++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..
T Consensus 166 ~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~ 245 (294)
T 1q5r_H 166 VPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA 245 (294)
T ss_dssp EEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 9999999975 6 999999999999999 8999999999999999999999999999999999999999999987
Q ss_pred CCCc--e-----EEEEEEcCCEEEcCccccccccCc
Q psy10990 423 SGSN--I-----DLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 423 sg~~--I-----eI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
++.. + +|++|+++|+++++++|++.++..
T Consensus 246 sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~ 281 (294)
T 1q5r_H 246 TGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARR 281 (294)
T ss_dssp TCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHH
T ss_pred cCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHH
Confidence 6543 6 999999999999999999988653
No 8
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=5.8e-39 Score=322.23 Aligned_cols=231 Identities=21% Similarity=0.293 Sum_probs=187.2
Q ss_pred CCcccchHHHHHHHHHHHHHHHHcCCCCCCccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhc
Q psy10990 121 FGRLSTSTIVQKALQSEINAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTV 200 (486)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~n~~l~~~g~~~~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~ 200 (486)
|..+..+++. .||+.....- .....+.++++|||+|||+++||||||+|+|+|+|.+|.+++++||++
T Consensus 44 ~~~p~~~~p~-~~~~~~~~~~---~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~-------- 111 (287)
T 3nzj_K 44 LTVPPIASPQ-QFLRAHTDDS---RNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIE-------- 111 (287)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEE--------
T ss_pred cccCCCCCHH-HHHHHhcccc---cccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEE--------
Confidence 4444445666 6666653321 111236678999999999999999999999999999998888877765
Q ss_pred cchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHH
Q psy10990 201 SSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280 (486)
Q Consensus 201 A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL 280 (486)
|++++++++||..+|++.+
T Consensus 112 -------------------------------------------------------------I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 112 -------------------------------------------------------------INPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------------------------------------------EETTEEEECEECHHHHHHH
T ss_pred -------------------------------------------------------------EcCcEEEEecCCHHHHHHH
Confidence 4577888999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-C
Q psy10990 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-D 359 (486)
Q Consensus 281 ~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~ 359 (486)
.+.++.+++.|++.+++.++++.+++++++++|.+++ .||++++|+|||| +
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----------------------------~p~~v~~lvaG~D~~ 182 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----------------------------AGLSMGTMICGYTRK 182 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----------------------------SCCCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----------------------------CCceEEEEEEEEcCC
Confidence 9999999999999999999999999999999998882 5999999999999 5
Q ss_pred CCceEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 360 TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 360 ~Gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
.||+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|+++
T Consensus 183 ~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~ 262 (287)
T 3nzj_K 183 EGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY 262 (287)
T ss_dssp TEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred CCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccc-cCcC
Q psy10990 440 LRPYEIANV-KGKK 452 (486)
Q Consensus 440 l~~~eI~~~-~~~~ 452 (486)
++++||+++ |..+
T Consensus 263 l~~~ev~~~l~~~~ 276 (287)
T 3nzj_K 263 HGNHDVGELFWKVK 276 (287)
T ss_dssp EEEEEHHHHHHHHH
T ss_pred eCHHHHHHHHHHHH
Confidence 999999875 5544
No 9
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=9.8e-39 Score=307.31 Aligned_cols=214 Identities=18% Similarity=0.239 Sum_probs=200.2
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh-hcCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL-NTGK 297 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l-~~g~ 297 (486)
.++|++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999988788888999999999999999999999999999999999999998 9999
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP 377 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~ 377 (486)
+++++.+++.+++.+|.++. + .|||++++|++|||+.||+||++||+|++.+++
T Consensus 82 ~~~v~~la~~l~~~ly~~r~--------------------~------~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~ 135 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRS--------------------K------MNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 135 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--------------------T------TCCCCEEEEEEEEETTEEEEEEECSSCCEEECS
T ss_pred CCCHHHHHHHHHHHHHHhcc--------------------c------CCCceEEEEEEEEECCCCEEEEECCCCCeEECC
Confidence 99999999999999876441 0 289999999999998899999999999999999
Q ss_pred eEEEcCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCCCC
Q psy10990 378 FCTMGSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGD 455 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~~~ 455 (486)
++|+|+|+++++++||+.|++ +||++||++++++||+.+.++|..++++++|++|+++|++++++++|++.|.+++-.
T Consensus 136 ~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~~~~~~ 215 (219)
T 1iru_N 136 SLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHMI 215 (219)
T ss_dssp EEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGCS
T ss_pred eEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhhHHHhh
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999998655
Q ss_pred ccc
Q psy10990 456 YRF 458 (486)
Q Consensus 456 ~~~ 458 (486)
..|
T Consensus 216 ~~~ 218 (219)
T 1iru_N 216 SGF 218 (219)
T ss_dssp CC-
T ss_pred cCC
Confidence 443
No 10
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2.7e-39 Score=316.31 Aligned_cols=219 Identities=13% Similarity=0.121 Sum_probs=203.4
Q ss_pred hhHhHHhHhccCCCcccccc-cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~-GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|+++.+|||++|. .+++++ |+|+||++++||||+|+|++.+ +.++...+.+||++|++|+++++||..+|++.+.+.
T Consensus 10 fsp~Grl~QvEYA-~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 87 (243)
T 1ryp_A 10 FSPEGRLYQVEYA-FKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87 (243)
T ss_dssp CCTTSCCHHHHHH-HHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHH
T ss_pred ECCCCeeHHHHHH-HHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHH
Confidence 5678999999994 678888 9999999999999999999988 455567788999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.+++.|++.++++++++.++++++++++.|++. + | .|||++++|+||||+ .||
T Consensus 88 ~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~------------------~-~-----~rP~~v~~lvaG~D~~~gp 143 (243)
T 1ryp_A 88 AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR------------------A-Y-----MRPLGVILTFVSVDEELGP 143 (243)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB------------------T-T-----SCCCSCEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcc------------------C-C-----ccccceEEEEEEEcCCCCc
Confidence 99999999999999999999999999999877731 1 1 289999999999997 789
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP-------NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN 435 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~-------dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd 435 (486)
+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.++| .++++++|++|+++
T Consensus 144 ~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~ 222 (243)
T 1ryp_A 144 SIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKD 222 (243)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETT
T ss_pred EEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC
Confidence 999999999999999999999999999999999999 9999999999999999999999 68999999999999
Q ss_pred CEEEcCccccccccC
Q psy10990 436 GVEYLRPYEIANVKG 450 (486)
Q Consensus 436 G~~~l~~~eI~~~~~ 450 (486)
|+++++++||+.++.
T Consensus 223 g~~~l~~~ei~~~~~ 237 (243)
T 1ryp_A 223 KFFTLSAENIEERLV 237 (243)
T ss_dssp EEEECCHHHHHHHHH
T ss_pred CeEECCHHHHHHHHH
Confidence 999999999998764
No 11
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=7.2e-39 Score=313.24 Aligned_cols=222 Identities=18% Similarity=0.275 Sum_probs=206.4
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 90 (244)
T 1ryp_C 12 FSPEGRLYQVEYA-LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTA 90 (244)
T ss_dssp BCTTSCBHHHHHH-HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECcCCeeHHHHhH-HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHH
Confidence 5678999999994 678899999999999999999999999999887678899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~ 363 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .++ .|||++++|++||| +.||+
T Consensus 91 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~~~------~rp~~v~~lvaG~D~~~gp~ 146 (244)
T 1ryp_C 91 RIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ------------------HGG------LRPFGVSFIYAGYDDRYGYQ 146 (244)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH------------------BSS------CCCCCEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhc------------------cCC------ccceEEEEEEEEEcCCCCCE
Confidence 999999999999999999999999999998883 111 28999999999999 77899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE--cCC----E
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK--KNG----V 437 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt--kdG----~ 437 (486)
||++||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+ ++| +
T Consensus 147 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~ 226 (244)
T 1ryp_C 147 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQ 226 (244)
T ss_dssp EEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEE
T ss_pred EEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeE
Confidence 9999999999999999999999999999999999999999999999999999999965679999999999 886 8
Q ss_pred EEcCccccccccCc
Q psy10990 438 EYLRPYEIANVKGK 451 (486)
Q Consensus 438 ~~l~~~eI~~~~~~ 451 (486)
+.++++||+.++..
T Consensus 227 ~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 227 KIFKPQEIKDILVK 240 (244)
T ss_dssp EECCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 99999999988653
No 12
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=9.8e-39 Score=321.16 Aligned_cols=233 Identities=20% Similarity=0.206 Sum_probs=168.5
Q ss_pred ccchHHHHHHHHHHHHHHHHcC--CCCC----CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeeccee
Q psy10990 124 LSTSTIVQKALQSEINAFLASK--GYSG----PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIA 197 (486)
Q Consensus 124 ~~~~~~~~~~~~~~~n~~l~~~--g~~~----~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~ 197 (486)
+.++||+ .||+..++++|+.. |..+ +.++++|||+|||+++||||||||+|+|+|.+|++++++||++
T Consensus 20 ~~~~~f~-~~~~~~~~~~l~~~~~~~~~~~~ya~~v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~----- 93 (291)
T 2jay_A 20 VDLSSFT-DFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYI----- 93 (291)
T ss_dssp ---------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEE-----
T ss_pred CCCccHH-HHhhhcChhhccccccccCcCccccccccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEE-----
Confidence 4568999 99999999999853 5543 3348999999999999999999999999999998888877755
Q ss_pred hhccchhhhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHH
Q psy10990 198 VTVSSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADT 277 (486)
Q Consensus 198 ~~~A~~~l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~ 277 (486)
|++++++++||..+|+
T Consensus 94 ----------------------------------------------------------------i~d~i~~~~aG~~aD~ 109 (291)
T 2jay_A 94 ----------------------------------------------------------------TDDYTATGIAGTAAVA 109 (291)
T ss_dssp ----------------------------------------------------------------EETTEEEEEESCHHHH
T ss_pred ----------------------------------------------------------------eCCcEEEEEcccHHHH
Confidence 4578888999999999
Q ss_pred HHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEE
Q psy10990 278 QVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGV 357 (486)
Q Consensus 278 ~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~ 357 (486)
+.|.+.++.+++.|++.++..++++.+++.+++++|.++.. . .|||++++|+|||
T Consensus 110 ~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~-~------------------------~rpf~v~~lvaG~ 164 (291)
T 2jay_A 110 VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAA-A------------------------MQGLLALPLLAGY 164 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHH-H------------------------HHTCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhh-h------------------------ccccceeEEEEEE
Confidence 99999999999999999999999999999999999988631 0 2799999999999
Q ss_pred cCC-C-----ceEEEEccCCcee--ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc---
Q psy10990 358 DDT-G-----AHLFNIYPHGSSD--TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSN--- 426 (486)
Q Consensus 358 D~~-G-----p~Ly~iDpsGs~~--e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~--- 426 (486)
|.. + |+||++||+|++. +++++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..+++.
T Consensus 165 D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~v 244 (291)
T 2jay_A 165 DIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLV 244 (291)
T ss_dssp CTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC-------------
T ss_pred eCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccc
Confidence 975 4 8999999999998 8999999999999999999999999999999999999999999999877653
Q ss_pred ----eEEEEEEcCCEEEcCccccccccCc
Q psy10990 427 ----IDLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 427 ----IeI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
++|++|+++|+++++++||+.++..
T Consensus 245 r~~~~~v~vi~~dg~~~l~~~ei~~~~~~ 273 (291)
T 2jay_A 245 RGIFPTAVIIDADGAVDVPESRIAELARA 273 (291)
T ss_dssp ---CCEEEEEETTEEEECCHHHHHHHHHH
T ss_pred cccCCEEEEEECCCeEEcCHHHHHHHHHH
Confidence 2699999999999999999998653
No 13
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.9e-38 Score=307.19 Aligned_cols=215 Identities=15% Similarity=0.230 Sum_probs=202.4
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh-----
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL----- 293 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l----- 293 (486)
.++|++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 467899999999999999999999999988778888999999999999999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCCc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHGS 372 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsGs 372 (486)
.+++.++++.+++++++.+|.++. + .|||++++|++|||+. ||+||++||+|+
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~-------------~-------------~~P~~v~~lvaG~D~~~gp~Ly~id~~G~ 135 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRS-------------K-------------MNPLWNAIIVAGVQSNGDQFLRYVNLLGV 135 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHH-------------T-------------TCCCCEEEEEEEECTTSCEEEEEEETTCC
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcC-------------C-------------CCCceEEEEEEEEcCCCCEEEEEECCCcC
Confidence 899999999999999999876541 0 2899999999999985 899999999999
Q ss_pred eeecCeEEEcCchhHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCccccc
Q psy10990 373 SDTVPFCTMGSGSLAAMSVFESNWKP-----NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIA 446 (486)
Q Consensus 373 ~~e~~~~AiGsGs~~a~~~Lek~yk~-----dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~eI~ 446 (486)
+.+++++|+|+|+++++++||+.|++ +||+|||++++++||+.+.++|..++++++|++|+++ |+++++++||+
T Consensus 136 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~ 215 (233)
T 1ryp_N 136 TYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVE 215 (233)
T ss_dssp EECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECC
T ss_pred eEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999 99999999999
Q ss_pred cc-cCcCCCCcccc
Q psy10990 447 NV-KGKKDGDYRFK 459 (486)
Q Consensus 447 ~~-~~~~~~~~~~~ 459 (486)
++ |++++....|.
T Consensus 216 ~~~w~~~~~~~~~~ 229 (233)
T 1ryp_N 216 NMKWDFAKDIKGYG 229 (233)
T ss_dssp SCCCGGGGGCCSSS
T ss_pred cccchhhhhccCcC
Confidence 99 99998777774
No 14
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.2e-38 Score=315.30 Aligned_cols=222 Identities=20% Similarity=0.254 Sum_probs=208.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 90 (261)
T 1iru_C 12 FSPEGRLYQVEYA-MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL 90 (261)
T ss_dssp CCTTSCCHHHHHH-HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCeehHHHhH-HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHH
Confidence 6678999999994 678899999999999999999999999999988887799999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~ 363 (486)
+.+++.|.+.++++++++.+++.+++++|.+++ .+. .|||++++|+||||+ .||+
T Consensus 91 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~~~------~rP~~v~~lvaG~D~~~gp~ 146 (261)
T 1iru_C 91 RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ------------------FGG------KRPFGVSLLYIGWDKHYGFQ 146 (261)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT------------------BSS------CCCCCEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcc------------------ccC------cCcceEEEEEEEEeCCCCcE
Confidence 999999999999999999999999999998882 111 289999999999995 7899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC----EE
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP-NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG----VE 438 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~-dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG----~~ 438 (486)
||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.++|..++++++|++|+++| ++
T Consensus 147 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~ 226 (261)
T 1iru_C 147 LYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIR 226 (261)
T ss_dssp EEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEE
T ss_pred EEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEE
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999997 79
Q ss_pred EcCccccccccCc
Q psy10990 439 YLRPYEIANVKGK 451 (486)
Q Consensus 439 ~l~~~eI~~~~~~ 451 (486)
+++++||+.++..
T Consensus 227 ~l~~~ei~~~l~~ 239 (261)
T 1iru_C 227 VLKQKEVEQLIKK 239 (261)
T ss_dssp ECCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 9999999998653
No 15
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.4e-38 Score=309.33 Aligned_cols=216 Identities=22% Similarity=0.225 Sum_probs=200.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++| ..+++++|+|+||++++||||+|+|++.+.++. .+.+||++|++|+++++||..+|++.+.+.+
T Consensus 12 fsp~Grl~QvEy-A~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 87 (233)
T 1ryp_F 12 FSPTGRLFQVEY-ALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 87 (233)
T ss_dssp CCTTSCCHHHHH-HHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCeehHHHH-HHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHH
Confidence 567899999999 467889999999999999999999999988754 3679999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.++++++.|++. ++ .|||++++|+||||+.||+|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~------------------~~------~rp~~v~~lvaG~D~~gp~L 143 (233)
T 1ryp_F 88 RQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS------------------YG------GRPYGVGLLIIGYDKSGAHL 143 (233)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHB------------------TT------CCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcc------------------cC------CcCcceEEEEEEEeCCcCEE
Confidence 9999999999999999999999999999988831 11 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCC--CC--CHHHHHHHHHHHHHHhhhcC-CCCCCceEEEEEEcC-CEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP--NM--TEEECKKLVRDAIAAGVFND-LGSGSNIDLCVIKKN-GVE 438 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~--dm--S~eEAi~La~kaLk~a~~rD-~~sg~~IeI~iItkd-G~~ 438 (486)
|++||+|++.+++++|+|+|++.++++||+.|++ +| |+|||+++++++|+.+. +| ..++++++|++|+++ |++
T Consensus 144 y~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~ 222 (233)
T 1ryp_F 144 LEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFT 222 (233)
T ss_dssp EEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEE
T ss_pred EEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEE
Confidence 9999999999999999999999999999999998 99 99999999999999999 77 578999999999999 799
Q ss_pred EcCcccccccc
Q psy10990 439 YLRPYEIANVK 449 (486)
Q Consensus 439 ~l~~~eI~~~~ 449 (486)
+++++||+.++
T Consensus 223 ~l~~~ei~~~l 233 (233)
T 1ryp_F 223 IYDGEAVAKYI 233 (233)
T ss_dssp EEEGGGGGGGC
T ss_pred ECCHHHHHhhC
Confidence 99999998864
No 16
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=9.8e-39 Score=311.93 Aligned_cols=223 Identities=25% Similarity=0.310 Sum_probs=204.4
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++ ..+.+||++|++++++++||..+|++.+.+.+
T Consensus 7 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 84 (242)
T 1ryp_E 7 FSPEGRLFQVEYS-LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84 (242)
T ss_dssp BCTTSCBHHHHHH-HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHH
T ss_pred ECCCCcChHHHhH-HHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHH
Confidence 6778999999994 678899999999999999999999999998877 77899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCC-CCCCcc-ccccceeEEEEEEc-CCC
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGS-GSNIDL-CGHVSAALVLGGVD-DTG 361 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gS-G~nVdl-~rP~gvslLiaG~D-~~G 361 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .+. .. .+ .|||++++|++||| ..|
T Consensus 85 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~------------------~~~~~~--~l~~RP~~v~~lvaG~D~~~g 144 (242)
T 1ryp_E 85 RTAAVTHNLYYDEDINVESLTQSVCDLALRFGE------------------GASGEE--RLMSRPFGVALLIAGHDADDG 144 (242)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBS------------------SCTTSC--CCBSSCCSEEEEEEEEETTTE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcc------------------ccCccc--ccccCcceEEEEEEEEeCCCC
Confidence 999999999999999999999999999887772 111 00 01 38999999999999 678
Q ss_pred ceEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEc
Q psy10990 362 AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYL 440 (486)
Q Consensus 362 p~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l 440 (486)
|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++ ..++.+++|++|+++| ++++
T Consensus 145 p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~ 223 (242)
T 1ryp_E 145 YQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIY 223 (242)
T ss_dssp EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEEC
T ss_pred CEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEEC
Confidence 9999999999999999999999999999999999999999999999999999999998 5689999999999998 6999
Q ss_pred CccccccccC
Q psy10990 441 RPYEIANVKG 450 (486)
Q Consensus 441 ~~~eI~~~~~ 450 (486)
+++||+.++.
T Consensus 224 ~~~ei~~~~~ 233 (242)
T 1ryp_E 224 DNEKTAELIK 233 (242)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998764
No 17
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=9.9e-39 Score=311.93 Aligned_cols=224 Identities=21% Similarity=0.276 Sum_probs=204.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++| ..+++++|+|+||++++||||+|+|++.+.+.++ ..+.+||++|++++++++||..+|++.+.+.+
T Consensus 15 fsp~Grl~QvEy-a~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 92 (241)
T 1iru_E 15 FSPEGRLFQVEY-DIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92 (241)
T ss_dssp BCTTSCBHHHHH-HHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCccHHHHH-HHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHH
Confidence 567899999999 4678999999999999999999999999999877 78899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.++++++.|++ .+.++... .|||++++|+||||+.||+|
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~------------------~~~~~~l~-~rp~~v~~lvaG~D~~gp~L 153 (241)
T 1iru_E 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGE------------------EDADPGAM-SRPFGVALLFGGVDEKGPQL 153 (241)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCS------------------TTCCSSCB-SSCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc------------------cccccccc-cccceEEEEEEEEeCCCCEE
Confidence 999999999999999999999999999877762 11100000 28999999999999888999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEcCcc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPY 443 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l~~~ 443 (486)
|.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||+.+.++ ..++++++|++|+++| +++++++
T Consensus 154 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ 232 (241)
T 1iru_E 154 FHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKE 232 (241)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHH
T ss_pred EEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHH
Confidence 9999999999999999999999999999999999999999999999999999998 6789999999999998 7999999
Q ss_pred ccccccC
Q psy10990 444 EIANVKG 450 (486)
Q Consensus 444 eI~~~~~ 450 (486)
||++++.
T Consensus 233 ei~~~~~ 239 (241)
T 1iru_E 233 ELEEVIK 239 (241)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998865
No 18
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=5.1e-38 Score=302.56 Aligned_cols=204 Identities=30% Similarity=0.392 Sum_probs=189.1
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
.+++.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.++++.+++.|++.++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35678999999999999999999999998877788899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCe
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPF 378 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~ 378 (486)
++++.+++.+++.+|.++ .|||++++++|||| +||+||.+||+|++.++++
T Consensus 82 ~~v~~la~~l~~~~~~~r----------------------------~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~ 132 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVK----------------------------YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIY 132 (217)
T ss_dssp CCHHHHHHHHHHHHHHTT----------------------------TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESE
T ss_pred CCHHHHHHHHHHHHHhcC----------------------------CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCE
Confidence 999999999999998755 28999999999999 8999999999999999999
Q ss_pred EEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc-CCEEEcCccccccccCc
Q psy10990 379 CTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK-NGVEYLRPYEIANVKGK 451 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk-dG~~~l~~~eI~~~~~~ 451 (486)
+|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|++ +|+++++++||+.++..
T Consensus 133 ~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~ 206 (217)
T 1yar_H 133 ASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRK 206 (217)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999 89999999999988754
No 19
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4e-38 Score=307.59 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=203.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++| ..+++++|+|+||++++||||+|+|++.+.++++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 9 fsp~Grl~QvEy-a~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 87 (241)
T 1ryp_D 9 FSPDGHIFQVEY-ALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKA 87 (241)
T ss_dssp CBTTTBCHHHHH-HHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHH-HHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHH
Confidence 567899999999 4678999999999999999999999999999888877899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGA 362 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp 362 (486)
+.+++.|++.++++++++.+++++++++|.+++ . +| .|||++++|+||||+ .||
T Consensus 88 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~-~~-----~rP~~v~~lvaG~D~~~~gp 143 (241)
T 1ryp_D 88 RVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQ------------------S-GG-----VRPFGVSTLIAGFDPRDDEP 143 (241)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------S-TT-----BCCCSEEEEEEECCTTCCSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcc------------------C-CC-----CCCcceeeEEEEEcCCCCCe
Confidence 999999999999999999999999999998872 1 11 389999999999998 789
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW---KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VE 438 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~y---k~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~ 438 (486)
+||++||+|++.+++++|+|+|+++++++||+.| +++||++||++++++||+.+.+ .++++++|++|+++| ++
T Consensus 144 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~ 220 (241)
T 1ryp_D 144 KLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIV 220 (241)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEE
T ss_pred eEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEE
Confidence 9999999999999999999999999999999999 9999999999999999999985 578999999999995 99
Q ss_pred EcCccccccccC
Q psy10990 439 YLRPYEIANVKG 450 (486)
Q Consensus 439 ~l~~~eI~~~~~ 450 (486)
+++++||+.++.
T Consensus 221 ~l~~~ei~~~~~ 232 (241)
T 1ryp_D 221 ALSSEEINQYVT 232 (241)
T ss_dssp ECCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999998864
No 20
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.5e-38 Score=302.90 Aligned_cols=201 Identities=31% Similarity=0.443 Sum_probs=191.9
Q ss_pred cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 225 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 225 GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.+.++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC-eEEEc
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP-FCTMG 382 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~-~~AiG 382 (486)
++++++++|.++ .+||++++|+||||+ .||+||++||+|++.+++ ++|+|
T Consensus 81 a~~l~~~~~~~~----------------------------~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG 132 (219)
T 3h4p_a 81 ATLLSNILHSSR----------------------------MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATG 132 (219)
T ss_dssp HHHHHHHHHHTT----------------------------TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEES
T ss_pred HHHHHHHHHHhc----------------------------CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEc
Confidence 999999998765 289999999999998 789999999999999999 99999
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCcCC
Q psy10990 383 SGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453 (486)
Q Consensus 383 sGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~~~ 453 (486)
+|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++||+.+++.-+
T Consensus 133 ~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~ 203 (219)
T 3h4p_a 133 SGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMK 203 (219)
T ss_dssp TTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987653
No 21
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=3.1e-38 Score=309.30 Aligned_cols=219 Identities=18% Similarity=0.194 Sum_probs=202.4
Q ss_pred hhHhHHhHhccCCCcccccc-cceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~-GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
|+++.+|+|++|. .++|++ |+|+||++++||||+|+|++.+. .++...+.+||++|++++++++||..+|++.|.+.
T Consensus 16 fsp~Grl~QvEya-~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~ 93 (246)
T 1iru_A 16 FSPEGRLYQVEYA-FKAINQGGLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 93 (246)
T ss_dssp CCTTSCCHHHHHH-HHHHHTTCCEEEEEECSSEEEEEEECCCCC-SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHH
T ss_pred CCCCCeehHHHHH-HHHHhcCCCCEEEEEeCCEEEEEEeecCCC-cccCCCccCceEEECCCEEEEEeccHHHHHHHHHH
Confidence 5678999999995 567777 99999999999999999999884 56667788999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 284 lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
++.+++.|++.++++++++.+++.++++++.|++. + | .|||++++|+||||+ .||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~------------------~-~-----~rp~~v~~lvaG~D~~~gp 149 (246)
T 1iru_A 94 ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN------------------A-E-----MRPLGCCMILIGIDEEQGP 149 (246)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB------------------S-S-----BCCCSEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcC------------------C-C-----CCCcceEEEEEEEeCCCCe
Confidence 99999999999999999999999999998888731 1 1 289999999999997 789
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EE
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VE 438 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~ 438 (486)
+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||+.+.++| .++++++|++|+++| ++
T Consensus 150 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~ 228 (246)
T 1iru_A 150 QVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFR 228 (246)
T ss_dssp EEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEE
T ss_pred EEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEE
Confidence 999999999999999999999999999999999999 9999999999999999999999 789999999999999 69
Q ss_pred EcCccccccccC
Q psy10990 439 YLRPYEIANVKG 450 (486)
Q Consensus 439 ~l~~~eI~~~~~ 450 (486)
+++++||+.++.
T Consensus 229 ~l~~~ei~~~~~ 240 (246)
T 1iru_A 229 ILTEAEIDAHLV 240 (246)
T ss_dssp ECCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999988764
No 22
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-37 Score=295.53 Aligned_cols=198 Identities=29% Similarity=0.447 Sum_probs=189.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC-eEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP-FCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~-~~AiGsG 384 (486)
+.+++.+|.++ .|||+++++++|||++||+||++||+|++.+++ ++|+|+|
T Consensus 81 ~~l~~~~~~~r----------------------------~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g 132 (202)
T 1j2q_H 81 TLTSNLLNSYR----------------------------YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSG 132 (202)
T ss_dssp HHHHHHHHHTT----------------------------TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTT
T ss_pred HHHHHHHHhhC----------------------------CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCC
Confidence 99999997755 289999999999999899999999999999999 9999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++|++.++..
T Consensus 133 ~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 199 (202)
T 1j2q_H 133 SLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199 (202)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGG
T ss_pred HHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999899999999999999999999999988754
No 23
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.7e-38 Score=312.38 Aligned_cols=220 Identities=17% Similarity=0.147 Sum_probs=204.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++. .+.+||++|++++++++||..+|++.|.+.+
T Consensus 13 fsP~Grl~QvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 88 (263)
T 1iru_F 13 WSPQGRIHQIEYA-MEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFM 88 (263)
T ss_dssp CCTTSCCHHHHHH-HHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCeehHHHHH-HHHHHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCCHHHHHHHHHHH
Confidence 5678999999994 67899999999999999999999999988753 3779999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++++|.+++ .++ .|||++++|++|||+.||+|
T Consensus 89 ~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~------------------~~~------~RP~~v~~lvaG~D~~gp~L 144 (263)
T 1iru_F 89 RQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ------------------RYG------RRPYGVGLLIAGYDDMGPHI 144 (263)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH------------------BTT------CCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhc------------------ccc------cccceEEEEEEEEcCCCCEE
Confidence 999999999999999999999999999998883 111 28999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcC-CCCCCceEEEEEEcC-CEEEc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP--NMTEEECKKLVRDAIAAGVFND-LGSGSNIDLCVIKKN-GVEYL 440 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~--dmS~eEAi~La~kaLk~a~~rD-~~sg~~IeI~iItkd-G~~~l 440 (486)
|++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||+.+.++| ..++++++|++|+++ +++++
T Consensus 145 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l 224 (263)
T 1iru_F 145 FQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIY 224 (263)
T ss_dssp EEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEE
T ss_pred EEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEEC
Confidence 9999999999999999999999999999999998 9999999999999999999999 478999999999999 79999
Q ss_pred CccccccccCcC
Q psy10990 441 RPYEIANVKGKK 452 (486)
Q Consensus 441 ~~~eI~~~~~~~ 452 (486)
+++||+.++..-
T Consensus 225 ~~~ei~~~~~~~ 236 (263)
T 1iru_F 225 DDDDVSPFLEGL 236 (263)
T ss_dssp CSGGGHHHHTTC
T ss_pred CHHHHHHHHHHH
Confidence 999999998654
No 24
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.3e-38 Score=313.17 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=204.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|. .++|++|+|+||++++||||+|+|++.+.++ +...+.+||++|++|+++++||..+|++.|.+.+
T Consensus 19 fSp~Grl~QvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~l-i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~ 96 (264)
T 3h4p_A 19 FSPEGRLYQVEYA-REAVRRGTTAIGIACKDGVVLAVDRRITSKL-VKIRSIEKIFQIDDHVAAATSGLVADARVLIDRA 96 (264)
T ss_dssp CCSSSSCHHHHHH-HHHHHHSCCEEEECCSSEEEEEEECCCCSTT-BCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTH
T ss_pred ECCCCeeHHHHhH-HHHHhcCCcEEEEEECCEEEEEEecCccCCc-cccCccccEEEecCcEEEEeccchHHHHHHHHHH
Confidence 6778999999995 5888999999999999999999999998874 5567899999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|.+.++++++++.+++.++++++.|++ .++ .|||++++|+||||+.||+|
T Consensus 97 r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~------------------~~~------~rP~~v~~lvaG~D~~gp~L 152 (264)
T 3h4p_A 97 RLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQ------------------HGG------VRPFGVSLLIAGIDKNEARL 152 (264)
T ss_dssp HHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTS------------------BSS------CCCCSEEEEEEEEETTEEEE
T ss_pred HHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhh------------------ccC------CCCeeEEEEEEEEeCCcCEE
Confidence 999999999999999999999999999988872 111 38999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC--CEEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN--GVEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd--G~~~l~~ 442 (486)
|++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.++ .++++++|++|+++ +++++++
T Consensus 153 y~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~ 230 (264)
T 3h4p_A 153 FETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV 230 (264)
T ss_dssp EEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred EEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence 9999999999999999999999999999999999999999999999999999977 68999999999976 5999999
Q ss_pred cccccccCcCC
Q psy10990 443 YEIANVKGKKD 453 (486)
Q Consensus 443 ~eI~~~~~~~~ 453 (486)
+||+.++..-+
T Consensus 231 ~ei~~~~~~~~ 241 (264)
T 3h4p_A 231 EEIKKLIEKVK 241 (264)
T ss_dssp TTTGGGTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 25
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=9.6e-38 Score=305.97 Aligned_cols=217 Identities=20% Similarity=0.215 Sum_probs=201.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.++++... .+||++|++++++++||..+|++.|.+.+
T Consensus 11 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 88 (244)
T 1ryp_G 11 FSPDGRNFQVEYA-VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRG 88 (244)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHH
T ss_pred CCcCCchHHHHhH-HHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHH
Confidence 6778999999994 788999999999999999999999999998887654 49999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++++++..+++++++++|.+++ +++ .|||++++|++|||++||+|
T Consensus 89 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~-------------------~~~-----~rp~~v~~lvaG~D~~gp~L 144 (244)
T 1ryp_G 89 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTL-------------------YNS-----VRPFGVSTIFGGVDKNGAHL 144 (244)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS-------------------CTT-----BCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc-------------------ccC-----ccCceEEEEEEEEeCCcCEE
Confidence 999999999999999999999999999998872 121 38999999999999989999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc---CCEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESN---WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK---NGVE 438 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~---yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk---dG~~ 438 (486)
|++||+|++.+++++|+|+|+++++++||+. |+++||++||++++++||+.+.++|..++.+++|++|++ +|++
T Consensus 145 y~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~ 224 (244)
T 1ryp_G 145 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLH 224 (244)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSE
T ss_pred EEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCee
Confidence 9999999999999999999999999999997 999999999999999999999999998899999999998 8899
Q ss_pred EcCcccccc
Q psy10990 439 YLRPYEIAN 447 (486)
Q Consensus 439 ~l~~~eI~~ 447 (486)
.+.|+++..
T Consensus 225 ~~~~~~~~~ 233 (244)
T 1ryp_G 225 KFVKGDLLQ 233 (244)
T ss_dssp EECCTHHHH
T ss_pred eeChHHHHH
Confidence 888877643
No 26
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=3.2e-38 Score=311.04 Aligned_cols=222 Identities=18% Similarity=0.192 Sum_probs=206.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++|. .+++++|+|+||+++++|||+|+|++.+.++++. .+.+||++|++|+++++||..+|++.|.+.+
T Consensus 14 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 91 (254)
T 1iru_G 14 FSPDGRVFQVEYA-MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIA 91 (254)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CCcCCccHHHHhH-HHHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHH
Confidence 6778999999994 6789999999999999999999999999988875 6889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~ 363 (486)
+.+++.|++.++++++++.+++.+++++|.+++ . +| .|||++++|+|||| ..||+
T Consensus 92 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~-~~-----~rP~~v~~lvaG~D~~~gp~ 147 (254)
T 1iru_G 92 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTL------------------Y-SA-----VRPFGCSFMLGSYSVNDGAQ 147 (254)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------B-SS-----BCCCSEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcc------------------c-cc-----cccceEEEEEEEEeCCCCcE
Confidence 999999999999999999999999999998872 1 11 38999999999999 67899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC--C-EEEc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN--G-VEYL 440 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd--G-~~~l 440 (486)
||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.+++..++.+++|++|+++ | ++++
T Consensus 148 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l 227 (254)
T 1iru_G 148 LYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIV 227 (254)
T ss_dssp EEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEEC
T ss_pred EEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEEC
Confidence 999999999999999999999999999999999999999999999999999998888778889999999987 6 9999
Q ss_pred CccccccccCcC
Q psy10990 441 RPYEIANVKGKK 452 (486)
Q Consensus 441 ~~~eI~~~~~~~ 452 (486)
+++++++++...
T Consensus 228 ~~~~i~~~~~~~ 239 (254)
T 1iru_G 228 PKDIREEAEKYA 239 (254)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999987654
No 27
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=5.5e-38 Score=308.21 Aligned_cols=219 Identities=24% Similarity=0.338 Sum_probs=202.8
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|||++| ..+++++|+|+||++++||||+|+|++.+.++ +...+.+||++|++|+++++||..+|++.|.+.+
T Consensus 10 fsp~Grl~QvEY-A~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 87 (248)
T 1iru_D 10 FSPDGHLFQVEY-AQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRA 87 (248)
T ss_dssp CCTTSCCHHHHH-HHHHHHTSCCEEEECCSSEEEEEECCCCCCSS-SCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHH
T ss_pred ECCCCcchHHHH-HHHHHHcCCCEEEEEeCCEEEEEEeecccccC-ccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHH
Confidence 567899999999 56789999999999999999999999998885 4567889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCce
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAH 363 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~ 363 (486)
+.+++.|++.++++++++.+++.++++++.+++ .++ .|||++++|+|||| +.||+
T Consensus 88 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~------------------~~~------~rp~~v~~lvaG~D~~~gp~ 143 (248)
T 1iru_D 88 RVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ------------------SNG------RRPFGISALIVGFDFDGTPR 143 (248)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTS------------------BTT------BCCCCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhc------------------cCC------cccccEEEEEEEEeCCCCcE
Confidence 999999999999999999999999999998882 111 38999999999999 67899
Q ss_pred EEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC-EEEc
Q psy10990 364 LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNM--TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYL 440 (486)
Q Consensus 364 Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dm--S~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG-~~~l 440 (486)
||++||+|++.+++++|+|+|+++++++||+.|+++| |++||++++++||+.+.+ .++++++|++|+++| ++++
T Consensus 144 Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l 220 (248)
T 1iru_D 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKIL 220 (248)
T ss_dssp EEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECC
T ss_pred EEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEEC
Confidence 9999999999999999999999999999999999999 999999999999999986 468999999999998 9999
Q ss_pred CccccccccCcC
Q psy10990 441 RPYEIANVKGKK 452 (486)
Q Consensus 441 ~~~eI~~~~~~~ 452 (486)
+++||+.++..-
T Consensus 221 ~~~ei~~~~~~~ 232 (248)
T 1iru_D 221 NPEEIEKYVAEI 232 (248)
T ss_dssp CHHHHHHHTTTT
T ss_pred CHHHHHHHHHHH
Confidence 999999887644
No 28
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=9.9e-38 Score=305.89 Aligned_cols=218 Identities=21% Similarity=0.301 Sum_probs=202.3
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+.+.+. ..+.+||++|++++++++||..+|++.|.+.+
T Consensus 15 fsp~Grl~QvEya-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~ 92 (246)
T 1j2p_A 15 FSPDGRLFQVEYA-REAVKRGATAIGIKCKEGVILIADKRVGSKLLE-KDTIEKIYKIDEHICAATSGLVADARVLIDRA 92 (246)
T ss_dssp CCTTSCCHHHHHH-HHHHHTSCCEEEEEETTEEEEEEECCCSCTTBC-GGGCCSEEECSSSEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCeehHHHhH-HHHHHcCCcEEEEEECCEEEEEEeccCCccccc-cCccCcEEEECCCEEEEEeEccHHHHHHHHHH
Confidence 6678999999995 678899999999999999999999999887654 67889999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.++++++++.+++.+++.++.|++ .+ | .|||++++|++||| +||+|
T Consensus 93 ~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~------------------~~-~-----~rp~~v~~lvaG~D-~gp~L 147 (246)
T 1j2p_A 93 RIEAQINRLTYDIPITVKELAKKICDFKQQYTQ------------------YG-G-----VRPFGVSLLIAGVN-EVPKL 147 (246)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTS------------------BT-T-----BCCCCEEEEEEEES-SSEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc------------------cc-C-----cccccEEEEEEEEC-CCCEE
Confidence 999999999999999999999999999988872 11 1 38999999999999 89999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE-c-CCEEEcCc
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK-K-NGVEYLRP 442 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt-k-dG~~~l~~ 442 (486)
|.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ + ++++++++
T Consensus 148 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~ 226 (246)
T 1j2p_A 148 YETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSP 226 (246)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCH
T ss_pred EEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCH
Confidence 9999999999999999999999999999999999999999999999999999988 7789999999999 6 48999999
Q ss_pred cccccccC
Q psy10990 443 YEIANVKG 450 (486)
Q Consensus 443 ~eI~~~~~ 450 (486)
+||+.++.
T Consensus 227 ~ei~~~~~ 234 (246)
T 1j2p_A 227 EELKPYVE 234 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 29
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3e-37 Score=306.31 Aligned_cols=216 Identities=15% Similarity=0.228 Sum_probs=202.6
Q ss_pred CcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh----
Q psy10990 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL---- 293 (486)
Q Consensus 218 ~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l---- 293 (486)
..+++++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++
T Consensus 34 ~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 113 (266)
T 1g0u_M 34 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL 113 (266)
T ss_dssp CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred hccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccch
Confidence 3567889999999999999999999999888777888999999999999999999999999999999999999998
Q ss_pred -hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-CceEEEEccCC
Q psy10990 294 -NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-GAHLFNIYPHG 371 (486)
Q Consensus 294 -~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-Gp~Ly~iDpsG 371 (486)
.+++.++++.+++++++++|.++. + .|||++++|++|||+. ||+||++||+|
T Consensus 114 ~~~~~~~~v~~la~~l~~~ly~~r~-------------~-------------~~P~~v~~lvaG~D~~~gp~Ly~idp~G 167 (266)
T 1g0u_M 114 ADAEEALEPSYIFEYLATVMYQRRS-------------K-------------MNPLWNAIIVAGVQSNGDQFLRYVNLLG 167 (266)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHH-------------T-------------TCCCCEEEEEEEECTTSCEEEEEEETTC
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhcc-------------C-------------CCCceEEEEEEEEcCCCCEEEEEECCCC
Confidence 899999999999999999876541 0 2899999999999985 89999999999
Q ss_pred ceeecCeEEEcCchhHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-CEEEcCcccc
Q psy10990 372 SSDTVPFCTMGSGSLAAMSVFESNWKP-----NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEI 445 (486)
Q Consensus 372 s~~e~~~~AiGsGs~~a~~~Lek~yk~-----dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd-G~~~l~~~eI 445 (486)
++.+++++|+|+|+++++++||+.|++ +||+|||++++++||+.+.++|..++++++|++|+++ |+++++++||
T Consensus 168 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei 247 (266)
T 1g0u_M 168 VTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 247 (266)
T ss_dssp CEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEEC
T ss_pred CEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHh
Confidence 999999999999999999999999999 9999999999999999999999999999999999999 9999999999
Q ss_pred ccc-cCcCCCCcccc
Q psy10990 446 ANV-KGKKDGDYRFK 459 (486)
Q Consensus 446 ~~~-~~~~~~~~~~~ 459 (486)
+++ |++++....|.
T Consensus 248 ~~~~w~~~~~~~~~~ 262 (266)
T 1g0u_M 248 ENMKWDFAKDIKGYG 262 (266)
T ss_dssp CCCCCGGGGGCCSSS
T ss_pred hhhhhhHHhhhcCcC
Confidence 999 99997777774
No 30
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=5.2e-37 Score=292.00 Aligned_cols=198 Identities=26% Similarity=0.392 Sum_probs=189.3
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecCeEEEcCch
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~~~AiGsGs 385 (486)
+.+++.+|.++. .||++++++||||+.||+||++||+|++.++++.|+|+|+
T Consensus 81 ~~l~~~~~~~r~----------------------------~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs 132 (204)
T 1iru_L 81 KLLANMVYQYKG----------------------------MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGS 132 (204)
T ss_dssp HHHHHHHHTTTT----------------------------SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTH
T ss_pred HHHHHHHHHhCC----------------------------CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCH
Confidence 999999998871 5899999999999989999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccccCc
Q psy10990 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451 (486)
Q Consensus 386 ~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~~~~ 451 (486)
++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++.++++|++.+++.
T Consensus 133 ~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 198 (204)
T 1iru_L 133 VYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEK 198 (204)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999998899999999999999999999999988653
No 31
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.1e-36 Score=288.03 Aligned_cols=197 Identities=31% Similarity=0.511 Sum_probs=188.7
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+.+++++|.++ .||+++++++|||+ .||+||.+||+|++.+++++++|+|
T Consensus 81 ~~l~~~~~~~~-----------------------------~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsg 131 (205)
T 1iru_H 81 SLFKEMCYRYR-----------------------------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSG 131 (205)
T ss_dssp HHHHHHHHHTT-----------------------------TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGG
T ss_pred HHHHHHHHhcC-----------------------------cCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCC
Confidence 99999999888 49999999999997 7899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCccccccccCc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRPYEIANVKGK 451 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~~eI~~~~~~ 451 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++| ++.++++||+.+++.
T Consensus 132 s~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp GGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 9999999999999999999999999999999999999899999999999998 468999999999875
No 32
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.9e-36 Score=289.99 Aligned_cols=195 Identities=24% Similarity=0.367 Sum_probs=187.5
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999987777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc-CCCceEEEEccCCceeecCeEEEcCc
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSG 384 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D-~~Gp~Ly~iDpsGs~~e~~~~AiGsG 384 (486)
+++++.+|.+++ .||++++++|||| +.||+||.+||+|++.+++++|+|+|
T Consensus 81 ~~l~~~~~~~~~----------------------------~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsg 132 (212)
T 1ryp_L 81 KILSNLVYQYKG----------------------------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 132 (212)
T ss_dssp HHHHHHHHHTTT----------------------------SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTT
T ss_pred HHHHHHHHhhCC----------------------------CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCC
Confidence 999999998882 5899999999999 56899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccccccc
Q psy10990 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANV 448 (486)
Q Consensus 385 s~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~eI~~~ 448 (486)
+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|+++++++|++.+
T Consensus 133 s~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~ 196 (212)
T 1ryp_L 133 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGEL 196 (212)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988
No 33
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=6.7e-37 Score=300.65 Aligned_cols=219 Identities=21% Similarity=0.338 Sum_probs=199.9
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|+++.+|+|++|. .+++++|+|+||++++||||+|+|++.+ +.++...+.+||++|++++++++||..+|++.|.+.+
T Consensus 12 fsp~Grl~QvEyA-~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~ 89 (250)
T 1ryp_B 12 FSPSGKLGQIDYA-LTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89 (250)
T ss_dssp BCTTSCBHHHHHH-HHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred ECCCCccHHHHhH-HHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHH
Confidence 5678999999994 6789999999999999999999999987 4566777899999999999999999999999999999
Q ss_pred HHHHHH-hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCc
Q psy10990 285 ASQLEL-LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGA 362 (486)
Q Consensus 285 r~~l~~-~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp 362 (486)
+.+++. |...++..++++.+++.++++++.+++. .| .|||++++|+||||+ .||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~-------------------~~-----~rp~~v~~lvaG~D~~~gp 145 (250)
T 1ryp_B 90 RKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQS-------------------GG-----VRPFGVSLLIAGHDEFNGF 145 (250)
T ss_dssp HHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTS-------------------BT-----BCCCCEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-------------------CC-----cccceEEEEEEEEcCCCCc
Confidence 999999 9999999999999999999998877721 01 389999999999997 689
Q ss_pred eEEEEccCCceeecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcC-------
Q psy10990 363 HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN------- 435 (486)
Q Consensus 363 ~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkd------- 435 (486)
+||++||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||+.+.+++. ++++++|++|+++
T Consensus 146 ~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~~~~~~~ 224 (250)
T 1ryp_B 146 SLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGY 224 (250)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSE
T ss_pred EEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998865 7999999999986
Q ss_pred ---------CEEEcCccccccccC
Q psy10990 436 ---------GVEYLRPYEIANVKG 450 (486)
Q Consensus 436 ---------G~~~l~~~eI~~~~~ 450 (486)
++++++++||+.++.
T Consensus 225 ~~~~~~~~~~~~~l~~~ei~~~l~ 248 (250)
T 1ryp_B 225 TGIPTDKGPRFRKLTSQEINDRLE 248 (250)
T ss_dssp ESCSSCCCCSEEECCHHHHHHHHT
T ss_pred cccccCCCCCeEECCHHHHHHHHH
Confidence 288999999988764
No 34
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.1e-36 Score=285.17 Aligned_cols=193 Identities=19% Similarity=0.282 Sum_probs=182.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCceeecCeEEEcC
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSDTVPFCTMGS 383 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~e~~~~AiGs 383 (486)
+.+++.+|.+++ + .+||+++++++|||+ .||+||.+||+|++.+++++|+|+
T Consensus 82 ~~l~~~l~~~~~--------------------~------r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~ 135 (198)
T 1ryp_K 82 SFVRQELAKSIR--------------------S------RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGY 135 (198)
T ss_dssp HHHHHHHHHHTT--------------------S------SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTT
T ss_pred HHHHHHHHHhcc--------------------c------CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcc
Confidence 999999987761 0 149999999999995 789999999999999999999999
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCccc
Q psy10990 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444 (486)
Q Consensus 384 Gs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~e 444 (486)
|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++.+++++
T Consensus 136 g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 136 SGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999998865
No 35
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=7.7e-37 Score=306.98 Aligned_cols=215 Identities=20% Similarity=0.221 Sum_probs=198.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
|++..+|||++| ..++|++|+|+||+++++|||+|+|++.+.++++.. +.+||++|++|+++++||..+|++.|.+++
T Consensus 15 fSP~Grl~QvEY-A~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~l 92 (288)
T 3nzj_F 15 FSPDGRNFQVEY-AVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRG 92 (288)
T ss_dssp CCTTSCCHHHHH-HHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCchHHHHH-HHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHH
Confidence 677899999999 578899999999999999999999999999887765 679999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceE
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHL 364 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~L 364 (486)
+.+++.|++.+++++++..+++++++++|.|++ .++ .|||+|++|+||||..||+|
T Consensus 93 r~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~------------------~~~------~rP~gv~~lvaG~D~~Gp~L 148 (288)
T 3nzj_F 93 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTL------------------YNS------VRPFGVSTIFGGVDKNGAHL 148 (288)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTS------------------CTT------BCCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHH------------------hcc------CCCceEEEEEEEEeCCCCEE
Confidence 999999999999999999999999999998882 111 38999999999999999999
Q ss_pred EEEccCCceeecCeEEEcCchhHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEc---CCEE
Q psy10990 365 FNIYPHGSSDTVPFCTMGSGSLAAMSVFESN---WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK---NGVE 438 (486)
Q Consensus 365 y~iDpsGs~~e~~~~AiGsGs~~a~~~Lek~---yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItk---dG~~ 438 (486)
|++||+|++.+++++|+|+|+++++++||+. |+++||++||++++++||..+.+++..++.+++|++|++ ++.+
T Consensus 149 y~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~ 228 (288)
T 3nzj_F 149 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLH 228 (288)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCC
T ss_pred EEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceE
Confidence 9999999999999999999999999999999 999999999999999999999999988889999999999 3555
Q ss_pred EcCcccc
Q psy10990 439 YLRPYEI 445 (486)
Q Consensus 439 ~l~~~eI 445 (486)
..-|.++
T Consensus 229 ~~vp~~~ 235 (288)
T 3nzj_F 229 KFVKGDL 235 (288)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 5555544
No 36
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8.8e-36 Score=283.99 Aligned_cols=193 Identities=30% Similarity=0.553 Sum_probs=182.9
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
.+++++|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.+++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5788999999999999999999999999887777888999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP 377 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~ 377 (486)
++++.+++.+++.+|.+++ + |+++++++|||+ .||+||.+||+|++.+++
T Consensus 82 ~~v~~la~~l~~~~~~~~~----------------------------~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~ 132 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKD----------------------------N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLP 132 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTT----------------------------T-CCEEEEEEEEETTTEEEEEEECTTSCCEEES
T ss_pred CCHHHHHHHHHHHHHhhhc----------------------------C-ceEEEEEEEEecCCCcEEEEECCCccEEecC
Confidence 9999999999999998881 3 789999999997 789999999999999999
Q ss_pred eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcC
Q psy10990 378 FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLR 441 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~ 441 (486)
++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++...
T Consensus 133 ~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~ 196 (205)
T 1ryp_H 133 YAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196 (205)
T ss_dssp EEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred EEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999989999999999999976543
No 37
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2e-35 Score=282.79 Aligned_cols=193 Identities=19% Similarity=0.297 Sum_probs=182.0
Q ss_pred ccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCC
Q psy10990 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIP 299 (486)
Q Consensus 220 ~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~ 299 (486)
+.+++|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++.+++++
T Consensus 4 p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 83 (213)
T 1iru_M 4 PYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAM 83 (213)
T ss_dssp SCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeecCe
Q psy10990 300 RVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPF 378 (486)
Q Consensus 300 ~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~~~ 378 (486)
+++.+++.+++.+|.++ .|||++++|++|||.+| |+||.+||+|++.++++
T Consensus 84 ~v~~la~~l~~~~y~~r----------------------------~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~ 135 (213)
T 1iru_M 84 TTGAIAAMLSTILYSRR----------------------------FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSF 135 (213)
T ss_dssp CHHHHHHHHHHHHHHTT----------------------------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESE
T ss_pred CHHHHHHHHHHHHHhhC----------------------------CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCE
Confidence 99999999999986443 18999999999999755 99999999999999999
Q ss_pred EEEcCchhHHHHHHHhc---------CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEc
Q psy10990 379 CTMGSGSLAAMSVFESN---------WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~---------yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l 440 (486)
+|+|+|+++++++||+. |+++||+|||++++++||+.+.++|..++++++|++|+++|++..
T Consensus 136 ~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 136 KAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp EEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred EEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 99999999999999999 889999999999999999999999999999999999999997654
No 38
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.4e-35 Score=280.98 Aligned_cols=194 Identities=30% Similarity=0.497 Sum_probs=183.1
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
||+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999988778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecC-eEEEcC
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVP-FCTMGS 383 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~-~~AiGs 383 (486)
+++++++|.++ +||++++|+||||+ .+|+||+ |+|++.++. +.++|+
T Consensus 81 ~~l~~~l~~~~-----------------------------~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gs 129 (199)
T 3unf_N 81 NVVKNISYKYR-----------------------------EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGS 129 (199)
T ss_dssp HHHHHHHHHTT-----------------------------TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEG
T ss_pred HHHHHHHHhcC-----------------------------CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEcc
Confidence 99999998776 79999999999998 6799999 999976555 666799
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCC--EEEcCccccccccC
Q psy10990 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG--VEYLRPYEIANVKG 450 (486)
Q Consensus 384 Gs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG--~~~l~~~eI~~~~~ 450 (486)
|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++| ++.++++||+.+|+
T Consensus 130 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 130 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp GGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred CHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999 67799999999986
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=5.3e-35 Score=282.42 Aligned_cols=194 Identities=21% Similarity=0.308 Sum_probs=182.5
Q ss_pred cccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC-C
Q psy10990 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG-K 297 (486)
Q Consensus 219 ~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g-~ 297 (486)
.+.+.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++.++ +
T Consensus 3 ~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 82 (222)
T 1ryp_M 3 NPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDK 82 (222)
T ss_dssp CCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356789999999999999999999999999888888999999999999999999999999999999999999999999 9
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCC-ceEEEEccCCceeec
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTV 376 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~G-p~Ly~iDpsGs~~e~ 376 (486)
.++++.+++.+++.+|.++ .+||++++|+||||.+| |+||++||+|++.++
T Consensus 83 ~~~v~~la~~l~~~ly~~r----------------------------~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~ 134 (222)
T 1ryp_M 83 KLSINSAARNIQHLLYGKR----------------------------FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYERE 134 (222)
T ss_dssp CCCHHHHHHHHHHHHHTTT----------------------------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHHhcC----------------------------CCCceEEEEEEEEcCCCCeEEEEECCCcCEEec
Confidence 9999999999999986544 17999999999999755 999999999999999
Q ss_pred CeEEEcCchhHHHHHHHhc-----------------CCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 377 PFCTMGSGSLAAMSVFESN-----------------WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~-----------------yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
+++|+|+|+++++++||+. |+++||+|||++++++||..+.++|..++++++|++|+++|++.
T Consensus 135 ~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 214 (222)
T 1ryp_M 135 QCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp SEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred CEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEE
Confidence 9999999999999999998 88999999999999999999999999999999999999999765
Q ss_pred c
Q psy10990 440 L 440 (486)
Q Consensus 440 l 440 (486)
.
T Consensus 215 ~ 215 (222)
T 1ryp_M 215 E 215 (222)
T ss_dssp E
T ss_pred E
Confidence 4
No 40
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.6e-34 Score=275.02 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=178.7
Q ss_pred cccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 221 aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
-+.+|+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.|.+.++.+++.|++.++++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 1iru_J 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIK 83 (205)
T ss_dssp TTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred ccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 35789999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCceeec-C
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSDTV-P 377 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~e~-~ 377 (486)
++.+++.+++.+|.++ + .||+++++++|||. +||+||++||+|++.++ .
T Consensus 84 v~~la~~l~~~~y~~r----------------------~------~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~ 135 (205)
T 1iru_J 84 PYTLMSMVANLLYEKR----------------------F------GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDD 135 (205)
T ss_dssp HHHHHHHHHHHHHTTT----------------------T------SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSS
T ss_pred HHHHHHHHHHHHHHhc----------------------C------CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCC
Confidence 9999999999985433 1 59999999999995 78999999999998665 5
Q ss_pred eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 378 FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
++|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++|++.
T Consensus 136 ~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 136 FVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp EEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred eeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999764
No 41
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=7.9e-35 Score=286.60 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=180.2
Q ss_pred ccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 214 KGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 214 le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
.+| ..++|++|+|+||++++||||+|+|++ ..+.+||++|++|+++++||..+|++.|.+.++.+++.|++
T Consensus 17 ~EY-A~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 17 SEL-ARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHH-HHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 345 467899999999999999999999998 24789999999999999999999999999999999999999
Q ss_pred hcC-CCCcHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC----CCceEEEE
Q psy10990 294 NTG-KIPRVITANRLLR-QMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD----TGAHLFNI 367 (486)
Q Consensus 294 ~~g-~~~~v~~la~~ls-~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~----~Gp~Ly~i 367 (486)
.++ ++++++.+++.++ .+.+.|++. .|||+|++|++|||. .||+||++
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~~--------------------------~rP~gv~~liaG~D~~~~~~gp~Ly~~ 141 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTEQ--------------------------AKPYEVELCVAEVAHYGETKRPELYRI 141 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHHS--------------------------SSCCCEEEEEEECCCTTCCCCCEEEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhccC--------------------------CCCceEEEEEEEEcCCCCCCCCEEEEE
Confidence 999 8999999999999 556666620 289999999999998 78999999
Q ss_pred ccCCcee-ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh-------hcCCCCCCceEEEEEEcCC---
Q psy10990 368 YPHGSSD-TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGV-------FNDLGSGSNIDLCVIKKNG--- 436 (486)
Q Consensus 368 DpsGs~~-e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~-------~rD~~sg~~IeI~iItkdG--- 436 (486)
||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||+.+. +++ .++++++|++|+++|
T Consensus 142 Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~ 220 (248)
T 3mi0_A 142 TYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRR 220 (248)
T ss_dssp CTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSC
T ss_pred CCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcc
Confidence 9999999 4999999999999999999999999999999999999999998 555 578999999999998
Q ss_pred -EEEcCccccccccCcC
Q psy10990 437 -VEYLRPYEIANVKGKK 452 (486)
Q Consensus 437 -~~~l~~~eI~~~~~~~ 452 (486)
+++++++||+.++..-
T Consensus 221 ~f~~l~~~ei~~~l~~~ 237 (248)
T 3mi0_A 221 AFRRITGSALQALLVDQ 237 (248)
T ss_dssp CEEECCHHHHHHTC---
T ss_pred cEEECCHHHHHHHHHHc
Confidence 9999999999998653
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.4e-34 Score=274.60 Aligned_cols=191 Identities=21% Similarity=0.316 Sum_probs=177.4
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++|+++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999988777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC-CCceEEEEccCCceeecCeEEEcC
Q psy10990 306 RLLRQML-FRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGS 383 (486)
Q Consensus 306 ~~ls~~l-~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~-~Gp~Ly~iDpsGs~~e~~~~AiGs 383 (486)
+++++.+ +..+ + .+||+++++++|||+ .||+||.+||+|++.+++++|+|+
T Consensus 82 ~~~~~~l~~~~~---------------------~------~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGs 134 (201)
T 1iru_K 82 NFTRRNLADCLR---------------------S------RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGY 134 (201)
T ss_dssp HHHHHHHHHHHT---------------------S------SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESH
T ss_pred HHHHHHHHHHHh---------------------c------CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECC
Confidence 8887754 2211 1 169999999999997 689999999999999999999999
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEEcCcc
Q psy10990 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443 (486)
Q Consensus 384 Gs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~l~~~ 443 (486)
|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++|++.++++
T Consensus 135 gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~ 194 (201)
T 1iru_K 135 GAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI 194 (201)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCB
T ss_pred cHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeecc
Confidence 999999999999999999999999999999999999999999999999999999988764
No 43
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.1e-34 Score=282.58 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=186.9
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN 305 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la 305 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++|++++++++||..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 58999999999999999999987778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCC-C-----ceEEEEccCCceeec--C
Q psy10990 306 RLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDT-G-----AHLFNIYPHGSSDTV--P 377 (486)
Q Consensus 306 ~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~-G-----p~Ly~iDpsGs~~e~--~ 377 (486)
+.+++++|.+++. + .|||++++|+||||.. + |+||++||+|++.++ +
T Consensus 81 ~~l~~~~~~~~~~------------~-------------~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~ 135 (235)
T 1q5q_H 81 NRLASMVRGNLGA------------A-------------MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 135 (235)
T ss_dssp HHHHHHHHTTHHH------------H-------------TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSS
T ss_pred HHHHHHHHHHHHh------------h-------------hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCC
Confidence 9999999988732 0 2899999999999986 7 999999999999999 9
Q ss_pred eEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc--e-----EEEEEEcCCEEEcCccccccccC
Q psy10990 378 FCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSN--I-----DLCVIKKNGVEYLRPYEIANVKG 450 (486)
Q Consensus 378 ~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~--I-----eI~iItkdG~~~l~~~eI~~~~~ 450 (486)
++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..+++. + +|++|+++|+++++++|++.++.
T Consensus 136 ~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~ 215 (235)
T 1q5q_H 136 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELAR 215 (235)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHH
T ss_pred eEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877642 3 99999999999999999998865
Q ss_pred c
Q psy10990 451 K 451 (486)
Q Consensus 451 ~ 451 (486)
.
T Consensus 216 ~ 216 (235)
T 1q5q_H 216 R 216 (235)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3.6e-34 Score=272.43 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=178.5
Q ss_pred ccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCC
Q psy10990 220 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIP 299 (486)
Q Consensus 220 ~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~ 299 (486)
+.+.+|+|+||++++||||+|+|++.+.+.++...+.+||++|+ ++++++||..+|++.|.+.++.+++.|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 81 (204)
T 1ryp_J 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAI 81 (204)
T ss_dssp GGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 34678999999999999999999999999988888999999999 99999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcC--CCceEEEEccCCceeec-
Q psy10990 300 RVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDD--TGAHLFNIYPHGSSDTV- 376 (486)
Q Consensus 300 ~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~--~Gp~Ly~iDpsGs~~e~- 376 (486)
+++.+++.+++.+|.++ + .||+++++++|||. +||+||.+||+|++.++
T Consensus 82 ~v~~la~~l~~~~y~~~----------------------~------~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~ 133 (204)
T 1ryp_J 82 EPETFTQLVSSSLYERR----------------------F------GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAK 133 (204)
T ss_dssp CHHHHHHHHHHHHHTTT----------------------T------SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCS
T ss_pred CHHHHHHHHHHHHHHhc----------------------C------CCceEEEEEEEEeCCCCceEEEEECCCCCccccC
Confidence 99999999999985443 1 59999999999996 78999999999998665
Q ss_pred CeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEEcCCEEE
Q psy10990 377 PFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439 (486)
Q Consensus 377 ~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iItkdG~~~ 439 (486)
.++|+|+|+++++++||+.|+++||+|||++++++||+.+.++|..++++++|++|+++|++.
T Consensus 134 ~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 134 DFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp SEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred ceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 679999999999999999999999999999999999999999999899999999999999764
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.6e-34 Score=285.85 Aligned_cols=212 Identities=11% Similarity=0.159 Sum_probs=187.8
Q ss_pred hhHhHHh-HhccCCCcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHH
Q psy10990 205 FQKNAFL-ASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283 (486)
Q Consensus 205 l~~nl~L-~~le~~~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~ 283 (486)
++++..+ +|++|. .++|++|+|+||++++||||+|+|++ ..+.+||++|++|+++++||..+|++.|.+.
T Consensus 7 ~sPe~~~~~qvEYA-~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 7 ASAEQIMRDRSELA-RKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp --CHHHHHHHHHHH-HHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-HHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 3556666 478885 57899999999999999999999998 2578999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCC-CCcHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEc---
Q psy10990 284 IASQLELLKLNTGK-IPRVITANRLLRQ-MLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD--- 358 (486)
Q Consensus 284 lr~~l~~~~l~~g~-~~~v~~la~~ls~-~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D--- 358 (486)
++.+++.|.+.++. +++++.+++.+++ +.+.|+. + .|||+|++|+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~---------------------~-----~rP~~v~~lvaG~D~~~ 131 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE---------------------Q-----PKPYEVEICVAEVGRVG 131 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH---------------------S-----SSCCCEEEEEEECCCSS
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc---------------------C-----CCCceEEEEEEEEcccC
Confidence 99999999988884 8999999999999 4444541 0 28999999999999
Q ss_pred -CCCceEEEEccCCcee-ecCeEEEcCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh-----hcCCCCCCceEEEE
Q psy10990 359 -DTGAHLFNIYPHGSSD-TVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGV-----FNDLGSGSNIDLCV 431 (486)
Q Consensus 359 -~~Gp~Ly~iDpsGs~~-e~~~~AiGsGs~~a~~~Lek~yk~dmS~eEAi~La~kaLk~a~-----~rD~~sg~~IeI~i 431 (486)
..||+||++||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||+.+. ++|. ++.+++|++
T Consensus 132 ~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~v 210 (259)
T 1q5q_A 132 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAV 210 (259)
T ss_dssp CCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEE
T ss_pred CCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEE
Confidence 6889999999999999 8899999999999999999999999999999999999999999 8998 899999999
Q ss_pred EEcC----CEEEcCccccccccCcC
Q psy10990 432 IKKN----GVEYLRPYEIANVKGKK 452 (486)
Q Consensus 432 Itkd----G~~~l~~~eI~~~~~~~ 452 (486)
|+++ +++.++++||+.++..-
T Consensus 211 i~~~~~~~~~~~l~~~ei~~~~~~~ 235 (259)
T 1q5q_A 211 LDQSRPRRAFRRIAGTALEQLVPAE 235 (259)
T ss_dssp EETTSSSCCEEECCHHHHHTTSCCC
T ss_pred EECCCCcCCeEECCHHHHHHHHHHh
Confidence 9999 79999999999887643
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.95 E-value=2.3e-27 Score=222.28 Aligned_cols=170 Identities=18% Similarity=0.127 Sum_probs=146.3
Q ss_pred cccceeeEEEecCeEEEEEeCCCCcCee-eecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 223 KTGTTIVGAIFADGVVLGADTRATDDTI-VAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 223 ~~GtTiIgI~~kdGVVlAaDtr~t~g~l-i~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
.+|+|+||++++||||+|+|++.+.+.+ +...+.+||++| ++|+++++||..+|++.|.++++.+++.|+ + +.
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5799999999999999999999998766 778899999999 999999999999999999999999999887 2 22
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceee--cCe
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDT--VPF 378 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e--~~~ 378 (486)
+...+ .+++.+..+. + .|||++++|++ ++|+||++||+|++.+ +++
T Consensus 78 ~~~~~-~l~~~~~~~~--------------------~-------~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~ 125 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDK--------------------V-------LRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGI 125 (180)
T ss_dssp HHHHH-HHHHHHHHCT--------------------T-------GGGCCCCEEEE----CSSCEEEECTTCCEECCSSSE
T ss_pred HHHHH-HHHHHHHhhh--------------------C-------cCcceEEEEEE----cCCeEEEECCCCcEEEeCCCE
Confidence 22222 2333222111 1 38999999998 3799999999999998 599
Q ss_pred EEEcCchhHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 379 CTMGSGSLAAMSVFESNWKP---NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 379 ~AiGsGs~~a~~~Lek~yk~---dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+|+|+|+++++++||+.|++ +||.|| ++++||+.+.++|..++++++|.+|
T Consensus 126 ~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 126 LAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp EEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred EEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99999999999999999998 999999 4779999999999999999999988
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.95 E-value=5e-27 Score=218.38 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=144.8
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++| ++|+++++||..+|++.|.++++.+++.|++ .....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 5899999999999999999998877888899999999 9999999999999999999999999998875 22333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC---eEEE
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP---FCTM 381 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~---~~Ai 381 (486)
+..+++.++.++ ..||++ .+++|+| +|+||++||+|++.+++ ++|+
T Consensus 75 ~~~l~~~~~~~~---------------------------~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~ 123 (174)
T 1g3k_A 75 AVELAKDWRTDR---------------------------ALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAI 123 (174)
T ss_dssp HHHHHHHHHHST---------------------------TGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEE
T ss_pred HHHHHHHHHhcc---------------------------CcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEE
Confidence 344444433222 026764 5677887 79999999999999988 9999
Q ss_pred cCchhHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEEE
Q psy10990 382 GSGSLAAMSVFESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIK 433 (486)
Q Consensus 382 GsGs~~a~~~Lek~yk-~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iIt 433 (486)
|+|+++++++||+.|+ ++||.+ +++++||+.+.++|..++++++|++|+
T Consensus 124 Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 124 GSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp STTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred cccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 9999999999999999 999954 799999999999999999999999985
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.95 E-value=4.5e-27 Score=217.98 Aligned_cols=167 Identities=20% Similarity=0.205 Sum_probs=144.0
Q ss_pred ceeeEEEecCeEEEEEeCCCCcCeeeecCCcceEEEe-cCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHH
Q psy10990 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYM-AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITA 304 (486)
Q Consensus 226 tTiIgI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I-~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~l 304 (486)
+|+||++++||||+|+|++.+.+.++...+.+||++| ++|+++++||..+|++.+.++++.+++.|+++ .+..+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 5899999999999999999998877888899999999 99999999999999999999999999988754 23333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccccccceeEEEEEEcCCCceEEEEccCCceeecC--eEEEc
Q psy10990 305 NRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVP--FCTMG 382 (486)
Q Consensus 305 a~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~rP~gvslLiaG~D~~Gp~Ly~iDpsGs~~e~~--~~AiG 382 (486)
++..+ .++.++ ..|||+++++++ | ||+||++||+|++.+++ +.|+|
T Consensus 76 ~~l~~-~~~~~~---------------------------~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~G 123 (171)
T 1m4y_A 76 VELAK-DWRTDR---------------------------VLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIG 123 (171)
T ss_dssp HHHHH-HHHHCT---------------------------TGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEES
T ss_pred HHHHH-HHHHhC---------------------------CCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEEC
Confidence 33322 222111 127899998887 5 89999999999999987 99999
Q ss_pred CchhHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhhhcCCCCCCceEEEEE
Q psy10990 383 SGSLAAMSVFESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI 432 (486)
Q Consensus 383 sGs~~a~~~Lek~yk-~dmS~eEAi~La~kaLk~a~~rD~~sg~~IeI~iI 432 (486)
+|+++++++||+.|+ ++||. ++++++||+.+.+||..++++++|.++
T Consensus 124 sgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 124 SGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp TTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred CcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 999999999999999 99996 678999999999999999999999864
No 49
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.72 E-value=1.9e-18 Score=164.24 Aligned_cols=162 Identities=21% Similarity=0.234 Sum_probs=122.7
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~ 219 (486)
++++++|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 577899999999999999999999999999999999999999986 66666666 2234567788877777
Q ss_pred ccccccceeeEEE-------e-cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI-------F-ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE 289 (486)
Q Consensus 220 ~aV~~GtTiIgI~-------~-kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~ 289 (486)
.++...+..++-. + ...++.+.|.. +..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 82 ~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~-----~~~~~aiGsgs~~a~~~Le~~~~---- 152 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVH-----KLPYAIAGSGSTFIYGYCDKNFR---- 152 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCE-----EESEEEESGGGGGGHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEE-----ecCEEEEEecHHHHHHHHHhccC----
Confidence 6666555544321 1 23455567852 3355566666542 35678899999999999888542
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 290 LLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 290 ~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.+++ .+||.+|+++|+..++.||..||+++++
T Consensus 153 -------~~~s----------------~eea~~l~~~al~~a~~~d~~sg~~i~v 184 (205)
T 1ryp_H 153 -------ENMS----------------KEETVDFIKHSLSQAIKWDGSSGGVIRM 184 (205)
T ss_dssp -------TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred -------CCCC----------------HHHHHHHHHHHHHHHHHhCCccCCeEEE
Confidence 3333 8999999999999999999999977653
No 50
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.70 E-value=3.4e-18 Score=166.63 Aligned_cols=157 Identities=31% Similarity=0.403 Sum_probs=120.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|.|.+|++++++||++++ ++.++.|| ..+..++.+|++.++.+.++...+
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 89999999999999999999999999999999999985 66666666 233456788888888877776655
Q ss_pred eeeEEEe--------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
..++-.. ...++.|.|... ..+.+++.++. ...+..+.|+|+......|++.+ ..
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~-----------~~ 144 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSY-----SRLPFTALGSGQGAAVALLEDRF-----------QP 144 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE-----EECSEEEEETTHHHHHHHHHHHC-----------CS
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCE-----EeccEEEEcCCchhhHHHHHhcc-----------CC
Confidence 5554211 224566688643 34455555554 34778899999999999988844 23
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ .|||.+|+++|+.+++.||.+||++++++
T Consensus 145 ~ms----------------~eeA~~la~~al~~~~~~D~~sg~~iev~ 176 (234)
T 3unf_H 145 NMT----------------LEAAQELLVEAITAGILSDLGSGGNVDAC 176 (234)
T ss_dssp SCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEEE
T ss_pred CCC----------------HHHHHHHHHHHHHHHHhhcCCCCCcEEEE
Confidence 443 89999999999999999999999887654
No 51
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.70 E-value=4.4e-18 Score=163.40 Aligned_cols=163 Identities=23% Similarity=0.185 Sum_probs=117.3
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCc
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGP 219 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~ 219 (486)
++++++|||+||++++||||||+|+|+|+|.++.+++++||+++| ++.++.|| ..+..++..|+.+++.+
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 456789999999999999999999999999999999999999986 66666666 22344677888888877
Q ss_pred ccccccceeeEEE-e--------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI-F--------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 220 ~aV~~GtTiIgI~-~--------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
.++...+..++-. + ...++.+.|..+..+.+++.++.. ..+..+.|+|+......|++.++
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D~gp~Ly~idp~G~~~-----~~~~~aiGsgs~~a~~~Le~~~~----- 151 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSV-----EDIYASTGSGSPFVYGVLESQYS----- 151 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEESSSEEEEEECTTCCEE-----EESEEEESTTHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEECCCCEEEEECCCCCeE-----ecCEEEEcCCHHHHHHHHHhhcc-----
Confidence 7777666655422 1 124555678222344455555542 23688899999999998888542
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
..++ .|||.+++.+|+..++.||..||+++++
T Consensus 152 ------~~~s----------------~eea~~la~~al~~~~~rd~~s~~~i~v 183 (217)
T 1yar_H 152 ------EKMT----------------VDEGVDLVIRAISAAKQRDSASGGMIDV 183 (217)
T ss_dssp ------TTCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCCEE
T ss_pred ------cCCC----------------HHHHHHHHHHHHHHHHhccCCCCCcEEE
Confidence 2333 8999999999999999999999877653
No 52
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.68 E-value=1.1e-17 Score=160.54 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=123.4
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhc-cCCC
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASK-GYSG 218 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~l-e~~~ 218 (486)
.+++++|||+|||+++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+. +++.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999999999999986 66666666 223456778887 8887
Q ss_pred cccccccceeeEEE-e----------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 219 PTARKTGTTIVGAI-F----------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 219 ~~aV~~GtTiIgI~-~----------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
+.++...+..++-. + ...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.++.
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVA-----YEAPSLATGYGAYLAQPLLREVLEK 156 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCE-----EECSEEECTTHHHHTHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCe-----EECCeEEECccHHHHHHHHHhhcCC
Confidence 77766666555421 1 124555688542 24445555544 2357788899999999998885532
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+|+++|+..++.+|..||+++++
T Consensus 157 ---------~~~mt----------------~eea~~l~~~al~~~~~~d~~sg~~i~v 189 (219)
T 1iru_N 157 ---------QPVLS----------------QTEARDLVERCMRVLYYRDARSYNRFQT 189 (219)
T ss_dssp ---------CSCCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred ---------CCCCC----------------HHHHHHHHHHHHHHHHHhcCcCCCcEEE
Confidence 01333 8999999999999999999999977653
No 53
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.68 E-value=1.8e-17 Score=157.28 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=121.0
Q ss_pred ccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 153 ~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
..+|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 578999999999999999999999999999999999999986 66666666 22345678888888877777
Q ss_pred cccceeeEEE-e--------cCeEEEEEeC--C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAI-F--------ADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 223 ~~GtTiIgI~-~--------kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
...+..++-. + ...++.+.|. . +..+.+++.++. + -...+.+.|+|+......|++.+
T Consensus 85 ~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~--~--~~~~~~aiG~gs~~a~~~Le~~~------ 154 (205)
T 1iru_J 85 YTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCP--M--VTDDFVVSGTCAEQMYGMCESLW------ 154 (205)
T ss_dssp HHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCE--E--ECSSEEEEETTHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCc--c--ccCCeeEeeeCHHHHHHHHhccc------
Confidence 7666655421 2 2346667884 2 234445555543 1 12456788999999999888744
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .|||.+|+.+|+.+++.+|..||+++++
T Consensus 155 -----~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~v 187 (205)
T 1iru_J 155 -----EPNMD----------------PDHLFETISQAMLNAVDRDAVSGMGVIV 187 (205)
T ss_dssp -----CSSCC----------------HHHHHHHHHHHHHHHGGGBTTSCSCEEE
T ss_pred -----CCCCC----------------HHHHHHHHHHHHHHHHHhCcccCCceEE
Confidence 23343 8999999999999999999999977653
No 54
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=9.9e-17 Score=154.32 Aligned_cols=157 Identities=25% Similarity=0.212 Sum_probs=120.7
Q ss_pred cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccccccc
Q psy10990 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 156 GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~G 225 (486)
|||+||++++||||||+|+|+|+|.+|.+++++||++++ ++.++.|| ..+..++.+|+..++.+.++...
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 899999999999999999999999999999999999986 66666666 22345678888888888887777
Q ss_pred ceeeEEEe---------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCe-EEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 226 TTIVGAIF---------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 226 tTiIgI~~---------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~-i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
+..++-.. ...+|.+.|. . +..+.+++.++. +..+ ..+.|+|+......|++.+
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~~aiG~gs~~a~~~Le~~~--------- 146 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGM-----NEEKTFTATGSGSPIAYGVLEAGY--------- 146 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCE-----EECSSEEEESTTHHHHHHHHHTSC---------
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCce-----EecCCEEEEcCCHHHHHHHHHHhc---------
Confidence 77665221 2456767886 2 234555565554 2355 8899999988888888733
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+|+.+|+..++.+|..||+++++
T Consensus 147 --~~~ms----------------~eea~~la~~al~~~~~rd~~sg~~i~v 179 (219)
T 3h4p_a 147 --DRDMS----------------VEEGIKLALNALKSAMERDTFSGNGISL 179 (219)
T ss_dssp --CTTCC----------------HHHHHHHHHHHHHHHHTSCSSCCSCCCE
T ss_pred --CCCCC----------------HHHHHHHHHHHHHHHHhhcCCCCCcEEE
Confidence 33443 8999999999999999999999977654
No 55
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.66 E-value=2.9e-17 Score=155.75 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=119.6
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeecceehhccc---------hhhhHhHHhHhccCCCcccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVSS---------IGFQKNAFLASKGYSGPTAR 222 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d~~~~~~A~---------~~l~~nl~L~~le~~~~~aV 222 (486)
-..+|||+||++++||||||+|+|+|.|.++.+++++||++++++.++.|| ..+..++.+|+.+++.+.++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeCCEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 357899999999999999999999999999999999999999966666666 22345677888888877777
Q ss_pred cccceeeEEE-e--------cCeEEEEEeC--C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 223 KTGTTIVGAI-F--------ADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 223 ~~GtTiIgI~-~--------kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
...+..++-. + ...++.+.|. . +..+.+++.++.- -...+.+.|+|+......|++.+
T Consensus 84 ~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~----~~~~~~aiG~gs~~a~~~Le~~~------ 153 (204)
T 1ryp_J 84 ETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCID----EAKDFIVSGTASDQLFGMCESLY------ 153 (204)
T ss_dssp HHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEE----CCSSEEEEETTHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCcc----ccCceeEeccCHHHHHHHHhhhc------
Confidence 7655555421 2 1235556784 2 2344455555430 12356778999999998888844
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
...++ .|||.+|+.+|+..++.+|..||++++
T Consensus 154 -----~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~ 185 (204)
T 1ryp_J 154 -----EPNLE----------------PEDLFETISQALLNAADRDALSGWGAV 185 (204)
T ss_dssp -----CSSCC----------------HHHHHHHHHHHHHHHHTTBTTSCSCEE
T ss_pred -----CCCcC----------------HHHHHHHHHHHHHHHHHhCcccCCcEE
Confidence 23343 899999999999999999999987654
No 56
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.66 E-value=1.2e-17 Score=161.92 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=123.2
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhc-----
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASK----- 214 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~l----- 214 (486)
.+++++|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 467899999999999999999999999999999999999999986 66666666 223446778888
Q ss_pred cCCCcccccccceeeEEE-e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 215 GYSGPTARKTGTTIVGAI-F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 215 e~~~~~aV~~GtTiIgI~-~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
.++.+.++...+..++-. + ...+|.+.|.. +..+.+++.++. ...+..+.|+|+......|+
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~-----~~~~~~aiGsgs~~a~~~Le 156 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT-----YSSPTLATGFGAHMANPLLR 156 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE-----ECCSEEECTHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCe-----EEcCEEEECcCHHHHHHHHH
Confidence 788777776666555421 1 12455567864 335556666654 34577788899988888887
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.++..-. ..++ +.|||.+|+++|+..++.||..||+++++
T Consensus 157 ~~~~~~~~------~~~m----------------s~eea~~la~~al~~~~~rd~~sg~~i~v 197 (233)
T 1ryp_N 157 KVVDRESD------IPKT----------------TVQVAEEAIVNAMRVLYYRDARSSRNFSL 197 (233)
T ss_dssp TTCSSGGG------GGGC----------------CHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred Hhhccccc------cCCC----------------CHHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 74422000 0023 48999999999999999999999976653
No 57
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.65 E-value=1e-16 Score=153.02 Aligned_cols=169 Identities=11% Similarity=0.072 Sum_probs=122.1
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
.+++|||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.+
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999999999986 66666666 2234467788888887777
Q ss_pred ccccceeeEEE-e--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI-F--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290 (486)
Q Consensus 222 V~~GtTiIgI~-~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~ 290 (486)
+...+..++-. + ...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.++.+-+.
T Consensus 85 v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~-----~~~~~~aiGsg~~~a~~~Le~~~~~~~~~ 159 (213)
T 1iru_M 85 TGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSY-----QRDSFKAGGSASAMLQPLLDNQVGFKNMQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE-----EEESEEEEETTHHHHHHHHHHHTTCCSCS
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCE-----EECCEEEEeeCHHHHHHHHhhcccccccc
Confidence 77655555421 2 124555678543 34455555554 23568889999999999888743210000
Q ss_pred hHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 291 ~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
-.+...++ .|||.+|+.+|+..++.+|..||++++
T Consensus 160 --~~~~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~ 194 (213)
T 1iru_M 160 --NVEHVPLS----------------LDRAMRLVKDVFISAAERDVYTGDALR 194 (213)
T ss_dssp --SCCCCCCC----------------HHHHHHHHHHHHHHHHHHBTTSCSEEE
T ss_pred --ccCCCCCC----------------HHHHHHHHHHHHHHHHHhCCccCCcEE
Confidence 00233443 899999999999999999999987654
No 58
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.65 E-value=4.2e-17 Score=157.96 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=118.5
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.| ++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.
T Consensus 29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (233)
T 1yar_A 29 EAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLV 107 (233)
T ss_dssp HHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 45689999999999999999999999997 68889999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...++.|.|.. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 108 ~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~- 181 (233)
T 1yar_A 108 NIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTI-----NEYKATAIGSGKDAVVSFLEREYK- 181 (233)
T ss_dssp CHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCE-----EeeeEEEEcCCcHHHHHHHHHHhc-
Confidence 7766665554211 12355567853 234455555554 345788899999999998888442
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+|+.+|+..++.+|. +|++++
T Consensus 182 ----------~~~s----------------~eea~~la~~al~~~~~~d~-s~~~i~ 211 (233)
T 1yar_A 182 ----------ENLP----------------EKEAVTLGIKALKSSLEEGE-ELKAPE 211 (233)
T ss_dssp ----------TTCC----------------HHHHHHHHHHHHHHTSCSSC-CCCCCE
T ss_pred ----------cCCC----------------HHHHHHHHHHHHHHHhhccC-CCCcEE
Confidence 2333 89999999999999999998 776664
No 59
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.65 E-value=3.4e-17 Score=161.64 Aligned_cols=162 Identities=16% Similarity=0.072 Sum_probs=123.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++.+|+..++.+.
T Consensus 26 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 105 (261)
T 1iru_C 26 EAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 105 (261)
T ss_dssp HHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 35689999999999999999999999999999999999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEE------------e-cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI------------F-ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~------------~-kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-. + ...+|.|.|. . +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 106 ~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~ 180 (261)
T 1iru_C 106 PCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNY-----GGWKATCIGNNSAAAVSMLKQDYK 180 (261)
T ss_dssp CHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEE-----EECSEEEESTTTTHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceE-----EeeeeEEeCcccHHHHHHHHHhhc
Confidence 777666666422 1 1245556784 2 335556666554 345788999999999999888543
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
.. .++ .+||.+|+.+|+..++.+|..+|++++
T Consensus 181 ~~----------~ms----------------~eeA~~la~~al~~~~~~d~~sg~~i~ 212 (261)
T 1iru_C 181 EG----------EMT----------------LKSALALAIKVLNKTMDVSKLSAEKVE 212 (261)
T ss_dssp TT----------CCC----------------HHHHHHHHHHHHHHSSSCTTCCSTTCE
T ss_pred cC----------CCC----------------HHHHHHHHHHHHHHHHhccCCCCCcEE
Confidence 20 343 899999999999999999999987764
No 60
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.65 E-value=1.2e-16 Score=153.90 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=124.3
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCC-Ccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYS-GPT 220 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~-~~~ 220 (486)
.+++|||+|||+++||||||+|+|+|.|.+|.+++++||++++ ++.++.|| ..+..++.+|+.+++ .+.
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4689999999999999999999999999999999999999986 66666666 223456788888888 777
Q ss_pred cccccceeeEEE-e--------cCeEEEEEeCCC--CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI-F--------ADGVVLGADTRA--TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLE 289 (486)
Q Consensus 221 aV~~GtTiIgI~-~--------kdGVVlAaDtr~--t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~ 289 (486)
++...+..++-. + ...++.+.|... ..+.+++.++.. ..+..+.|+|+......|++.++..-.
T Consensus 85 ~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~-----~~~~~a~Gsg~~~a~~~Le~~~~~~~~ 159 (222)
T 1ryp_M 85 SINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYE-----REQCRAGGAAASLIMPFLDNQVNFKNQ 159 (222)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEE-----EESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEE-----ecCEEEEcCcHHHHHHHHhcccccccc
Confidence 777666666522 2 124555678543 355566666542 356788999998888888874321100
Q ss_pred Hh------HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 290 LL------KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 290 ~~------~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
.. .-.+..+++ .|||.+|+++|+.+++.||..||+++++
T Consensus 160 ~~~~~~~~~~~~~~~~s----------------~eeA~~la~~al~~a~~rd~~sg~~i~v 204 (222)
T 1ryp_M 160 YEPGTNGKVKKPLKYLS----------------VEEVIKLVRDSFTSATERHIQVGDGLEI 204 (222)
T ss_dssp BCTTSTTCSBCCCCCCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred cccccccccccCCCCCC----------------HHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 00 000233444 8999999999999999999999976543
No 61
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.65 E-value=1.4e-16 Score=155.00 Aligned_cols=157 Identities=38% Similarity=0.481 Sum_probs=119.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+++++.+.++...+
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888888777776655
Q ss_pred eeeEEE-ec-------CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAI-FA-------DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~-~k-------dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
+.++-. +. ..++.|.|... ..+.+++.++. ...+..+.|+|+......|++.+ ..
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~-----------~~ 144 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST-----DKLPYVTMGSGSLAAMAVFEDKF-----------RP 144 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCE-----EECSEEEESTTHHHHHHHHHHSC-----------CT
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCE-----EecCEEEECCchHHHHHHHHHhc-----------cC
Confidence 555422 11 23555678533 34455555554 34678889999999999888843 33
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ .+||.+|+.+|+.+++.+|.+||++++++
T Consensus 145 ~ms----------------~eeA~~la~~al~~a~~~d~~sg~~i~v~ 176 (234)
T 1iru_I 145 DME----------------EEEAKNLVSEAIAAGIFNDLGSGSNIDLC 176 (234)
T ss_dssp TCC----------------HHHHHTHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CCC----------------HHHHHHHHHHHHHHHHHhcccCCCCEEEE
Confidence 343 89999999999999999999999887644
No 62
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.65 E-value=6.1e-17 Score=157.92 Aligned_cols=166 Identities=8% Similarity=-0.026 Sum_probs=121.7
Q ss_pred ccccc-cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCc
Q psy10990 151 TARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGP 219 (486)
Q Consensus 151 ~~~~t-GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~ 219 (486)
+++++ |||+||++++||||||||+|++ |.++.+++++||++++ ++.++.|| + .+..++.+|++.++.+
T Consensus 24 ~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~ 102 (243)
T 1ryp_A 24 KATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYD 102 (243)
T ss_dssp HHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34678 9999999999999999999999 8999999999999986 66666666 2 2244677888888888
Q ss_pred ccccccceeeEEEe-------------cCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGAIF-------------ADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 220 ~aV~~GtTiIgI~~-------------kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
.++...+..++-.. ...+|.|.|. . +..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 103 ~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~-----~~~~~~a~G~gs~~a~~~Le~~~ 177 (243)
T 1ryp_A 103 MPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY-----VGYKATATGPKQQEITTNLENHF 177 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCE-----EEEEEEEECCCcHHHHHHHHHHh
Confidence 87777766665222 1246667885 2 335555566554 23568889999999999999877
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+..-. .....+ +.+||.+|+.+|+.+++.|| .||++++
T Consensus 178 ~~~~~----~~~~~m----------------s~eea~~l~~~al~~~~~rd-~s~~~ie 215 (243)
T 1ryp_A 178 KKSKI----DHINEE----------------SWEKVVEFAITHMIDALGTE-FSKNDLE 215 (243)
T ss_dssp HHHCS----SSCCCS----------------SHHHHHHHHHHHHHHHHTCC-CCTTSEE
T ss_pred hhccc----ccccCC----------------CHHHHHHHHHHHHHHHhccc-CCCCcEE
Confidence 54100 001123 38999999999999999999 6776654
No 63
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.64 E-value=4.9e-17 Score=156.75 Aligned_cols=157 Identities=35% Similarity=0.388 Sum_probs=118.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|+|.++.+++++||++++ ++.++.|| ..+..++.+|+++++.+..+...+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888888777776666
Q ss_pred eeeEEEe--------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGK 297 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~ 297 (486)
..++-.. ...++.+.|... ..+.+++.++. ...+..+.|+|+......|++.+ ..
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~-----------~~ 144 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST-----DVGYYLSLGSGSLAAMAVLESHW-----------KQ 144 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE-----EECSEEEESTTHHHHHHHHHHHC-----------CS
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCE-----EecCEEEECCCHHHHHHHHHhhC-----------CC
Confidence 5554221 134555678643 24445555553 34678899999998888888743 23
Q ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 298 IPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 298 ~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+++ .+||.+|+++|+.+++.+|..||++++++
T Consensus 145 ~ms----------------~eeA~~la~~al~~~~~~d~~sg~~i~v~ 176 (222)
T 1ryp_I 145 DLT----------------KEEAIKLASDAIQAGIWNDLGSGSNVDVC 176 (222)
T ss_dssp SCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CcC----------------HHHHHHHHHHHHHHHHhccccCCCcEEEE
Confidence 443 89999999999999999999999877644
No 64
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.64 E-value=4.1e-17 Score=158.05 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=118.7
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+| +.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 104 (233)
T 1iru_B 26 AAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI 104 (233)
T ss_dssp HHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 346789999999999999999999999 7899999999999986 66666666 223456778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...++.|.|... ..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 105 ~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~- 178 (233)
T 1iru_B 105 PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAY-----FAWKATAMGKNYVNGKTFLEKRYN- 178 (233)
T ss_dssp CHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCE-----EEeeEEEECCCCHHHHHHHHHHhc-
Confidence 7776666554221 123555678433 34455555554 335788899999999998888443
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+|+.+|+..++.+| .||++++
T Consensus 179 ----------~~ms----------------~eea~~la~~al~~~~~~d-~sg~~i~ 208 (233)
T 1iru_B 179 ----------EDLE----------------LEDAIHTAILTLKESFEGQ-MTEDNIE 208 (233)
T ss_dssp ----------TTCC----------------HHHHHHHHHHHHHTTCCSC-CCSSSEE
T ss_pred ----------cCCC----------------HHHHHHHHHHHHHHHhhcc-CCCCCEE
Confidence 2333 8999999999999999999 6776654
No 65
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.64 E-value=1e-16 Score=151.22 Aligned_cols=156 Identities=23% Similarity=0.217 Sum_probs=116.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||||+|+|+|.+|.+++++||++++ ++.++.|| ..+..++.+|+.+++.+..+...+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 89999999999999999999999999999999999986 56666666 223456788888888887777666
Q ss_pred eeeEEEe--------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCC
Q psy10990 227 TIVGAIF--------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKI 298 (486)
Q Consensus 227 TiIgI~~--------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~ 298 (486)
..++-.. ...++.+.|......++.+.++. + -...+.+.|+|+......|++.++ .+
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~p~G~~--~--~~~~~~~~Gsgs~~a~~~Le~~~~-----------~~ 145 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGM--L--IRQPFTIGGSGSSYIYGYVDAAYK-----------PG 145 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEECGGGC--C--EECSEEEEEGGGGGGHHHHHHHCC-----------SS
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCc--e--ecCCEEEEccCHHHHHHHHHhhcC-----------CC
Confidence 6664221 23566678863221222244432 1 125566779999999999988542 34
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 299 PRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 299 ~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
++ .|||.+|+.+|+..++.+|..||++++
T Consensus 146 ms----------------~eea~~la~~al~~~~~~d~~sg~~i~ 174 (199)
T 3unf_N 146 MT----------------PEECRRFTTNAITLAMNRDGSSGGVIY 174 (199)
T ss_dssp CC----------------HHHHHHHHHHHHHHHHHHCTTCCSCEE
T ss_pred CC----------------HHHHHHHHHHHHHHHHHhccccCCCeE
Confidence 43 899999999999999999999997654
No 66
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.64 E-value=4.1e-17 Score=159.08 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=119.7
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|+|..+++++++||++++ ++.++.|| ..+..++.+|+..++.+.
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 105 (244)
T 1ryp_C 26 ESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDI 105 (244)
T ss_dssp HHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 44689999999999999999999999999999899999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEe-CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGAD-TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaD-tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-.. ...+|.+.| .. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 106 ~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~ 180 (244)
T 1ryp_C 106 PVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNY-----TGWKAISVGANTSAAQTLLQMDYK 180 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccE-----EeeeEEEECCCcHHHHHHHHHhhh
Confidence 7776666554221 124555688 32 234455555554 345788899999999999888543
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .|||.+|+.+|+.+++.+|..||++++
T Consensus 181 -----------~~ms----------------~eea~~la~~al~~~~~rd~~sg~~i~ 211 (244)
T 1ryp_C 181 -----------DDMK----------------VDDAIELALKTLSKTTDSSALTYDRLE 211 (244)
T ss_dssp -----------TTCC----------------HHHHHHHHHHHHHHHCSSSSCCGGGEE
T ss_pred -----------cCCC----------------HHHHHHHHHHHHHHHhccccCCCCcEE
Confidence 2333 899999999999999999555675543
No 67
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.63 E-value=3.6e-17 Score=162.03 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=122.6
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhc-----
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASK----- 214 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~l----- 214 (486)
-+++++|||+|||+++||||||||+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.
T Consensus 35 ~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 114 (266)
T 1g0u_M 35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 114 (266)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchh
Confidence 456789999999999999999999999999999999999999986 66666666 223446778887
Q ss_pred cCCCcccccccceeeEEE-e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 215 GYSGPTARKTGTTIVGAI-F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 215 e~~~~~aV~~GtTiIgI~-~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
+++.+.++...+..++-. + ...+|.+.|.. +..+.+++.++. ...+..+.|+|+......|+
T Consensus 115 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le 189 (266)
T 1g0u_M 115 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT-----YSSPTLATGFGAHMANPLLR 189 (266)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE-----ECCSEEECTHHHHTHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCE-----EeCCEEEEccCHHHHHHHHH
Confidence 777777776665555411 1 12355567863 335556666554 34677888899988888887
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
+.++..-. ...+ +.|||.+|+++|+..++.||..||+++++
T Consensus 190 ~~~~~~~~------~~~m----------------s~eeA~~la~~al~~a~~rd~~sg~~i~v 230 (266)
T 1g0u_M 190 KVVDRESD------IPKT----------------TVQVAEEAIVNAMRVLYYRDARSSRNFSL 230 (266)
T ss_dssp TTCSSGGG------GGGC----------------CHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred Hhhccccc------CCCC----------------CHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 74422000 0023 48999999999999999999999977653
No 68
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.62 E-value=1e-16 Score=152.19 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=118.1
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66666666 223456778888888777777666
Q ss_pred eeeEEE-e-------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAI-F-------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~-~-------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-. + ...++.|.|.. +..+.+.+.++. ...+..+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~-----~~~~~~a~Gsgs~~a~~~Le~~~~----------- 144 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM-----VRQSFAIGGSGSSYIYGYVDATYR----------- 144 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC-----EECSEEEESGGGGGGHHHHHHHCC-----------
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcE-----EecCEEEECCCHHHHHHHHHHhcC-----------
Confidence 555422 1 12455567863 234455555554 235678889999999999888542
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
..++ .+||.+++.+|+.+++.+|..||+++++
T Consensus 145 ~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~v 176 (205)
T 1iru_H 145 EGMT----------------KEECLQFTANALALAMERDGSSGGVIRL 176 (205)
T ss_dssp TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSCEEE
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHHhccccCCcEEE
Confidence 2333 8999999999999999999999977653
No 69
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.62 E-value=9.1e-17 Score=156.93 Aligned_cols=160 Identities=13% Similarity=0.018 Sum_probs=120.0
Q ss_pred cccc-cceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 152 ARKT-GTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 152 ~~~t-GTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
++++ |||+||++++||||||+|+|+| |.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.
T Consensus 31 av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
T 1iru_A 31 AINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEI 109 (246)
T ss_dssp HHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4567 9999999999999999999999 7999999999999986 66666666 223456778888888887
Q ss_pred cccccceeeEEE---e----------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI---F----------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~---~----------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-. + ...+|.|.|.. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 110 ~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~ 184 (246)
T 1iru_A 110 PVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY-----CGFKATAAGVKQTESTSFLEKKVK 184 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEEETTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE-----EEeeEEEECCCcHHHHHHHHHhhc
Confidence 777777766522 1 12355567852 334555566554 235788899999999999888543
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
. ...++ .+||.+|+.+|+..++.+| .||++++
T Consensus 185 ~---------~~~ms----------------~eea~~la~~al~~~~~rd-~sg~~i~ 216 (246)
T 1iru_A 185 K---------KFDWT----------------FEQTVETAITCLSTVLSID-FKPSEIE 216 (246)
T ss_dssp S---------CCCCC----------------HHHHHHHHHHHHHHHTTCC-CCTTSEE
T ss_pred c---------cCCCC----------------HHHHHHHHHHHHHHHhccc-CCCCcEE
Confidence 2 11343 8999999999999999999 8886654
No 70
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.62 E-value=4.6e-16 Score=147.48 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=116.3
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||+++| ++.++.|| ..+..++..|+..++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 56666666 222445778888888777776655
Q ss_pred eeeEEEe---c------CeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhcC
Q psy10990 227 TIVGAIF---A------DGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTG 296 (486)
Q Consensus 227 TiIgI~~---k------dGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g 296 (486)
..++-.. . ..++.|.|... ..+.+++.++. +..+..+.|+|+......|++.+ .
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~-----------~ 144 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR-----ISGATFSVGSGSVYAYGVMDRGY-----------S 144 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCE-----EECSEEEESTTHHHHHHHHHTTC-----------C
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcE-----EEeCCEEEEcCHHHHHHHHhccC-----------C
Confidence 5554211 1 24555678533 34556666655 33577888999998888888743 2
Q ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 297 KIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 297 ~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+|+++|+..++.||..+|++++
T Consensus 145 ~~~s----------------~eea~~l~~~al~~~~~rd~~s~~~i~ 175 (204)
T 1iru_L 145 YDLE----------------VEQAYDLARRAIYQATYRDAYSGGAVN 175 (204)
T ss_dssp TTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEE
T ss_pred CCCC----------------HHHHHHHHHHHHHHHHHhCccCCCceE
Confidence 3343 899999999999999999998987654
No 71
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.62 E-value=1.2e-16 Score=151.21 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=116.9
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66667666 223456778888888777777666
Q ss_pred eeeEEEe---------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCe-EEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 227 TIVGAIF---------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 227 TiIgI~~---------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~-i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..++-.. ...++.+.|... ..+.+++.++..+ .+ ..+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~-----~~~~~aiG~g~~~a~~~Le~~~~---------- 145 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIE-----EKDIVATGSGSLTAYGVLEDRFT---------- 145 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEE-----ESSEEEESTTHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeee-----cCCEEEEcCCHHHHHHHHHhhcC----------
Confidence 6665221 123555678532 3444555555422 34 88899999999988888542
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..++ .+||.+++.+|+..++.+|..||++++
T Consensus 146 -~~~s----------------~eea~~la~~al~~~~~~d~~s~~~i~ 176 (202)
T 1j2q_H 146 -PEIG----------------VDEAVELAVRAIYSAMKRDSASGDGID 176 (202)
T ss_dssp -TTCC----------------HHHHHHHHHHHHHHHHTTCTTSCSCEE
T ss_pred -CCcC----------------HHHHHHHHHHHHHHHHhcCCCCCCcEE
Confidence 2333 899999999999999999999987654
No 72
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.62 E-value=1.9e-16 Score=154.28 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=116.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.|..+ +++++||++++ ++.++.|| ..+..++..|+.+++.+.
T Consensus 29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (241)
T 1iru_E 29 EAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETM 107 (241)
T ss_dssp HHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44679999999999999999999999999998 89999999986 66666666 223446778887777776
Q ss_pred cccccceeeEEE---e---------------cCeEEEEEeCC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHH
Q psy10990 221 ARKTGTTIVGAI---F---------------ADGVVLGADTR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281 (486)
Q Consensus 221 aV~~GtTiIgI~---~---------------kdGVVlAaDtr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~ 281 (486)
++...+..++-. + ...+|.+.|.. +..+.+++.++. +..+..+.|+|+......|+
T Consensus 108 ~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le 182 (241)
T 1iru_E 108 TVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF-----VQCDARAIGSASEGAQSSLQ 182 (241)
T ss_dssp CHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcE-----EecceEEECCCcHHHHHHHH
Confidence 666655544311 1 12355567843 234455555554 23477888999999999888
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 282 ~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+.++ ..++ .|||.+|+.+|+.+++.+ ..||++++
T Consensus 183 ~~~~-----------~~ms----------------~eea~~la~~al~~~~~~-~~sg~~i~ 216 (241)
T 1iru_E 183 ELYH-----------KSMT----------------LKEAIKSSLIILKQVMEE-KLNATNIE 216 (241)
T ss_dssp HHCC-----------TTCC----------------HHHHHHHHHHHHHHHCSS-CCCTTSEE
T ss_pred HHhc-----------cCCC----------------HHHHHHHHHHHHHHHhhc-cCCCCCEE
Confidence 8542 3333 899999999999999988 56776554
No 73
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.61 E-value=1.6e-16 Score=151.60 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=117.5
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|+|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 66677766 223446778888888777777666
Q ss_pred eeeEEE--------e-cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 227 TIVGAI--------F-ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 227 TiIgI~--------~-kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..++-. + ...++.+.|.. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~---------- 145 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR-----LKGDIFCVGSGQTFAYGVLDSNYK---------- 145 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCE-----EECSEEEESTTHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCcee-----EecCCEEEcCCHHHHHHHHHhhCC----------
Confidence 665422 1 22455567832 335556666655 235678899999998888887442
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
..+ +.+||.+|+++|+..++.||..+|++++
T Consensus 146 -~~~----------------s~eea~~la~~al~~~~~rd~~s~~~i~ 176 (212)
T 1ryp_L 146 -WDL----------------SVEDALYLGKRSILAAAHRDAYSGGSVN 176 (212)
T ss_dssp -TTC----------------CHHHHHHHHHHHHHHHHHHBTTCCSEEE
T ss_pred -CCC----------------CHHHHHHHHHHHHHHHHHhccccCCceE
Confidence 233 3899999999999999999999987654
No 74
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.61 E-value=2.1e-16 Score=153.83 Aligned_cols=159 Identities=18% Similarity=0.109 Sum_probs=115.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.|.++ +++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 21 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 99 (242)
T 1ryp_E 21 EAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDI 99 (242)
T ss_dssp HHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34689999999999999999999999999988 89999999986 66666666 223445778888877777
Q ss_pred cccccceeeEEE-------------------ecCeEEEEEeC-C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHH
Q psy10990 221 ARKTGTTIVGAI-------------------FADGVVLGADT-R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQV 279 (486)
Q Consensus 221 aV~~GtTiIgI~-------------------~kdGVVlAaDt-r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~v 279 (486)
++...+..++-. +...++.|.|. . +..+.+++.++. +..+..+.|+|+......
T Consensus 100 ~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~ 174 (242)
T 1ryp_E 100 NVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF-----YRYNAKAIGSGSEGAQAE 174 (242)
T ss_dssp CHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCE-----eccCEEEECCCCHHHHHH
Confidence 776666655421 11235556783 2 234455555554 234678889999999998
Q ss_pred HHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 280 TTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 280 L~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
|++.++ ..++ .+||.+|+.+|+..++.+ ..||++++
T Consensus 175 Le~~~~-----------~~ms----------------~eea~~la~~al~~~~~~-~~sg~~i~ 210 (242)
T 1ryp_E 175 LLNEWH-----------SSLT----------------LKEAELLVLKILKQVMEE-KLDENNAQ 210 (242)
T ss_dssp HHHHCC-----------TTCC----------------HHHHHHHHHHHHHHHCSS-CCCTTSEE
T ss_pred HHHhhc-----------cCCC----------------HHHHHHHHHHHHHHHhhc-cCCCCcEE
Confidence 888442 3333 899999999999999988 55675543
No 75
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.61 E-value=2.3e-15 Score=140.68 Aligned_cols=153 Identities=11% Similarity=0.058 Sum_probs=104.0
Q ss_pred cccceEEEEEeCCeEEEeecCCCCCCce-eeecceeeeeee-c-ceehhccc-----hhh----hHhHHhHhccCCCccc
Q psy10990 154 KTGTTIVGAIFADGVVLGADTRATDDTI-VAEKNCYLLSYS-D-LIAVTVSS-----IGF----QKNAFLASKGYSGPTA 221 (486)
Q Consensus 154 ~tGTTivgv~~~~GVVLaaDsRAT~G~~-Va~k~~~KI~~~-d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~a 221 (486)
.+|||+|||+++||||||+|+|+|.|.+ |.+++++||+++ + ++.++.|| +.+ ..++.+|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~-g----~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN-G----NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT-T----CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc-C----Ch
Confidence 6899999999999999999999999999 999999999999 4 66666666 222 33455554 1 00
Q ss_pred cccccee---e----EE-EecCeEEEEEeCCCCcCeeeecCCcceEEEec--CeEEEEecCchHHHHHHHHHHHHHHHHh
Q psy10990 222 RKTGTTI---V----GA-IFADGVVLGADTRATDDTIVAEKNCQKIHYMA--KNIYCCGAGTAADTQVTTDLIASQLELL 291 (486)
Q Consensus 222 V~~GtTi---I----gI-~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~--~~i~~~gSGs~aD~~vL~~~lr~~l~~~ 291 (486)
+.....+ + +. .+.-.+++| | .+..+.+++.++. +. .+..+.|||+..+...|++.++...
T Consensus 78 ~~~~~~l~~~~~~~~~~rp~~~~~lva-d-~p~ly~~d~~G~~-----~~~~~~~~a~Gsgs~~a~~~le~~~~~~~--- 147 (180)
T 2z3b_A 78 KRAAVELAKEWRSDKVLRKLEAMLIVM-N-QDTLLLVSGTGEV-----IEPDDGILAIGSGGNYALAAGRALKKHAG--- 147 (180)
T ss_dssp HHHHHHHHHHHHHCTTGGGCCCCEEEE-C-SSCEEEECTTCCE-----ECCSSSEEEESTTHHHHHHHHHHHHHHHG---
T ss_pred HHHHHHHHHHHHhhhCcCcceEEEEEE-c-CCeEEEECCCCcE-----EEeCCCEEEECCCHHHHHHHHHHhhhccC---
Confidence 0000000 0 00 122345555 5 3445555555543 33 4788999999999999999776410
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 292 KLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 292 ~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.++ +.|| ++++|+..++.||.+||++++++
T Consensus 148 -----~~m----------------t~ee---l~~~al~~a~~rd~~sg~~i~v~ 177 (180)
T 2z3b_A 148 -----ESM----------------SASE---IARAALETAGEICVYTNDQIILE 177 (180)
T ss_dssp -----GGC----------------CHHH---HHHHHHHHHHHHCTTCCSCCEEE
T ss_pred -----CCC----------------CHHH---HHHHHHHHHHHhcCccCCeEEEE
Confidence 012 2444 67899999999999999998754
No 76
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.60 E-value=2.1e-16 Score=154.87 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=111.4
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhh----hHhHHh-HhccCCCc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGF----QKNAFL-ASKGYSGP 219 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l----~~nl~L-~~le~~~~ 219 (486)
+++++|||+||++++||||||+|+|+| |.++.+++++||++++ ++.++.|| +.+ ..++.. |+..++.+
T Consensus 26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 104 (250)
T 1ryp_B 26 TAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEY 104 (250)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346799999999999999999999998 8999999999999986 66666666 223 334555 65555555
Q ss_pred ccccccceeeEE-------------EecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 220 TARKTGTTIVGA-------------IFADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 220 ~aV~~GtTiIgI-------------~~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
..+...+..++- -....+|.+.|.. +..+.+++.++. +..+..+.|+|+......|++.+
T Consensus 105 ~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~ 179 (250)
T 1ryp_B 105 PPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSY-----FPWKATAIGKGSVAAKTFLEKRW 179 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCE-----EeeceeEecCccHHHHHHHHHHh
Confidence 543332111110 0112455567863 345556666654 33578889999999999888854
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
+ ..++ .|||.+|+.+|+.+++.+|. ||++++
T Consensus 180 ~-----------~~ms----------------~eea~~la~~al~~~~~~~~-sg~~i~ 210 (250)
T 1ryp_B 180 N-----------DELE----------------LEDAIHIALLTLKESVEGEF-NGDTIE 210 (250)
T ss_dssp C-----------TTCC----------------HHHHHHHHHHHHHHHCCSCC-STTTEE
T ss_pred c-----------cCCC----------------HHHHHHHHHHHHHHHhcccc-CCCCEE
Confidence 2 3333 89999999999999998865 776654
No 77
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.60 E-value=2e-16 Score=149.59 Aligned_cols=156 Identities=11% Similarity=0.021 Sum_probs=116.2
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|.|.++.+++++||++++ ++.++.|| ..+..++.+|+.+++.+.++...+
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 89999999999999999999999999999999999986 56666666 223456778888888777666555
Q ss_pred eeeEE------E-----ecCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhHh
Q psy10990 227 TIVGA------I-----FADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKL 293 (486)
Q Consensus 227 TiIgI------~-----~kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l 293 (486)
..+.- . ....++.+.|.. +..+.+++.++. ...+..+.|+|+......|++.++
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~-------- 148 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAAL-----AKAPFAAHGYGAFLTLSILDRYYT-------- 148 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCE-----EECSEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCe-----EECCEEEECCcHHHHHHHHHhccc--------
Confidence 44421 0 112455568863 334555566554 346788899999888888887442
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 294 NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 294 ~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
..+ +.+||.+|+++|+..++.||..||+++++
T Consensus 149 ---~~~----------------s~eea~~l~~~al~~a~~rd~~sg~~i~v 180 (201)
T 1iru_K 149 ---PTI----------------SRERAVELLRKCLEELQKRFILNLPTFSV 180 (201)
T ss_dssp ---TTC----------------CHHHHHHHHHHHHHHHHHTBCBCCCCEEE
T ss_pred ---CCC----------------CHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 233 38999999999999999999999976553
No 78
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.59 E-value=2e-16 Score=154.69 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=118.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|.++.+++ +||++++ ++.++.|| ..+..++..|+.+++.+.
T Consensus 25 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~-~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 103 (244)
T 1ryp_G 25 KAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 103 (244)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTS-CCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHCCCCEEEEEECCEEEEEEecccCCCCcccccc-CceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456899999999999999999999999999998765 9999986 66666666 223456778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...+|.+.|... ..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 104 ~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~~- 177 (244)
T 1ryp_G 104 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY-----WGYKGAATGKGRQSAKAELEKLVD- 177 (244)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCE-----EEeeEEEECCChHHHHHHHHHhHh-
Confidence 7776666554211 123555678532 34445555554 234788899999888888887431
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
++...++ .+||.+++.+|+..++.+|..+|.++
T Consensus 178 -------~~~~~ms----------------~eea~~la~~al~~~~~~d~~s~~~i 210 (244)
T 1ryp_G 178 -------HHPEGLS----------------AREAVKQAAKIIYLAHEDNKEKDFEL 210 (244)
T ss_dssp -------HCTTCCC----------------HHHHHHHHHHHHHHHGGGGTTSCEEE
T ss_pred -------hcCCCCC----------------HHHHHHHHHHHHHHHHhccCCCCCeE
Confidence 1223343 89999999999999999998887443
No 79
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.59 E-value=6.8e-16 Score=149.57 Aligned_cols=160 Identities=15% Similarity=0.070 Sum_probs=116.5
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~a 221 (486)
++++|||+||++++||||||||+|+|+|.. ++++||++++ ++.++.|| ..+..++..|+..++.+.+
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (233)
T 1ryp_F 27 AIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLA 103 (233)
T ss_dssp HHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999999953 5889999986 66666666 2234567788888888877
Q ss_pred ccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 222 V~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
+...+..++-.. ...+|.|.|... ..+.+++.++.. ..+..+.|+|+......|++.++..
T Consensus 104 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~-----~~~~~aiG~gs~~a~~~Le~~~~~~ 178 (233)
T 1ryp_F 104 VERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVT-----ELYGTAIGARSQGAKTYLERTLDTF 178 (233)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEE-----EESEEEESTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCee-----eeeEEEECCCcHHHHHHHHHHhccc
Confidence 776666665222 124555688533 345555665542 3468889999999999998877540
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccc-cCCCCCCc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND-LGSGSNID 343 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD-~gSG~nVd 343 (486)
.++. .+.|||.+++.+|+..++ +| ..||++++
T Consensus 179 ---------~~m~--------------~s~eea~~~a~~al~~~~-~d~~~s~~~i~ 211 (233)
T 1ryp_F 179 ---------IKID--------------GNPDELIKAGVEAISQSL-RDESLTVDNLS 211 (233)
T ss_dssp ---------TTCC--------------SCHHHHHHHHHHHHTTSC-CSSCCCTTTEE
T ss_pred ---------cccC--------------CCHHHHHHHHHHHHHHHh-hcccCCCCcEE
Confidence 0120 038899999999999998 88 57887654
No 80
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.59 E-value=3.2e-16 Score=153.14 Aligned_cols=158 Identities=17% Similarity=0.087 Sum_probs=115.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|. +.+++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (246)
T 1j2p_A 29 EAVKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPI 107 (246)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 356799999999999999999999999975 5589999999986 66666666 223456778888888777
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
++...+..++-.. ...+|.+.|..+..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 108 ~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~-- 180 (246)
T 1j2p_A 108 TVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGAL-----LEYKATAIGMGRMAVTEFFEKEYR-- 180 (246)
T ss_dssp CHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESSSEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccEEEEEEEECCCCEEEEECCCceE-----EeeeEEEECCCcHHHHHHHHHHhc--
Confidence 7776666554221 12355668832334455555554 234678889999999998888542
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
..++ .+||.+|+.+|+.+++.+ ..||+++
T Consensus 181 ---------~~ms----------------~eea~~la~~al~~~~~~-~~sg~~i 209 (246)
T 1j2p_A 181 ---------DDLS----------------FDDAMVLGLVAMGLSIES-ELVPENI 209 (246)
T ss_dssp ---------TTCC----------------HHHHHHHHHHHHHHHHTS-CCCGGGE
T ss_pred ---------cCCC----------------HHHHHHHHHHHHHHHhhc-cCCCCcE
Confidence 2343 899999999999999886 6676554
No 81
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.58 E-value=9.1e-16 Score=151.70 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=117.8
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|. .++++||+++| ++.++.|| ..+..++..|+..++.+.
T Consensus 27 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i 103 (263)
T 1iru_F 27 EAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL 103 (263)
T ss_dssp HHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 346789999999999999999999999994 46899999986 66666666 223446778888888887
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...+|.|.|... ..+.+++.++.. ..+..+.|+|+......|++.++.
T Consensus 104 ~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~-----~~~~~aiGsgs~~a~~~Le~~~~~ 178 (263)
T 1iru_F 104 PVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYF-----DCRAMSIGARSQSARTYLERHMSE 178 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEE-----EESEEEESTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEE-----EeeEEEcCcccHHHHHHHHHHhcc
Confidence 7776666665222 123555678532 344555555542 336888999999999999987754
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccc-cCCCCCCc
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFND-LGSGSNID 343 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD-~gSG~nVd 343 (486)
. ..+ +.+||.+|+.+|+..++.+| ..||++++
T Consensus 179 ~---------~~m----------------s~eea~~la~~al~~~~~rd~~~sg~~ie 211 (263)
T 1iru_F 179 F---------MEC----------------NLNELVKHGLRALRETLPAEQDLTTKNVS 211 (263)
T ss_dssp H---------TTC----------------CHHHHHHHHHHHHHTTSCTTCCCCTTTEE
T ss_pred c---------CCC----------------CHHHHHHHHHHHHHHHHhccccCCCCcEE
Confidence 0 122 38999999999999999999 57887654
No 82
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.58 E-value=2.8e-16 Score=148.22 Aligned_cols=156 Identities=12% Similarity=-0.037 Sum_probs=116.6
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+||++++||||||+|+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+.+++.+.++...+
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 89999999999999999999999999999999999986 66666666 223446778888888777776655
Q ss_pred eeeEEEe-----------cCeEEEEEeC---CCCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHHHHHhH
Q psy10990 227 TIVGAIF-----------ADGVVLGADT---RATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLK 292 (486)
Q Consensus 227 TiIgI~~-----------kdGVVlAaDt---r~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~l~~~~ 292 (486)
..++-.. ...++.+.|. .+..+.+++.++. ...+..+.|+|+......|++.+
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~-----~~~~~~aiG~g~~~a~~~Le~~~-------- 148 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTK-----VELPYGAHGYSGFYTFSLLDHHY-------- 148 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCE-----EECSEEECTTHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCE-----EECCEEEEcccHHHHHHHHHhhc--------
Confidence 5554211 1235556784 2334555566554 33577888999988888888744
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 293 LNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 293 l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
...++ .+||.+|+.+|+..++.+|..||+++++
T Consensus 149 ---~~~~s----------------~eea~~l~~~al~~~~~~d~~s~~~i~v 181 (198)
T 1ryp_K 149 ---RPDMT----------------TEEGLDLLKLCVQELEKRMPMDFKGVIV 181 (198)
T ss_dssp ---CTTCC----------------HHHHHHHHHHHHHHHHHHCSBCCCCEEE
T ss_pred ---CCCCC----------------HHHHHHHHHHHHHHHHHhCccCCCceEE
Confidence 23333 8999999999999999999999977653
No 83
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=3.1e-16 Score=155.29 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=115.6
Q ss_pred cccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCccc
Q psy10990 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPTA 221 (486)
Q Consensus 152 ~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~a 221 (486)
++++|||+|||+++||||||+|+|+|+| ++.+++++||++++ ++.++.|| + .+..++.+|++.++.+.+
T Consensus 34 av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~ 112 (264)
T 3h4p_A 34 AVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEIS 112 (264)
T ss_dssp HHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 4579999999999999999999999997 78889999999986 66666666 2 224467788888888887
Q ss_pred ccccceeeEEE---e----------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHHH
Q psy10990 222 RKTGTTIVGAI---F----------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQ 287 (486)
Q Consensus 222 V~~GtTiIgI~---~----------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~~ 287 (486)
+...+..++-. + ...+|.|.|... ..+.+++.++.. ..+..+.|+|+......|++.+
T Consensus 113 v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~-----~~~~~aiGsgs~~a~~~Le~~~--- 184 (264)
T 3h4p_A 113 IEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALI-----EYKATAIGSGRPVVMELLEKEY--- 184 (264)
T ss_dssp HHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCE-----EESEEEESTTHHHHTTTHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEE-----ecCeEEECCCHHHHHHHHHHhc---
Confidence 77666665422 1 124566688643 345555666542 2467889999988888888844
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 288 LELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 288 l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
...++ .+||.+|+.+|+..++.+ .||++++
T Consensus 185 --------~~~ms----------------~eea~~la~~al~~a~~~--~sg~~ie 214 (264)
T 3h4p_A 185 --------RDDIT----------------LDEGLELAITALTKANED--IKPENVD 214 (264)
T ss_dssp --------CTTCC----------------SHHHHHHHHHHHHHHSSS--CCTTSEE
T ss_pred --------cCCCC----------------HHHHHHHHHHHHHHHHhc--cCCCeEE
Confidence 23343 789999999999999865 5775543
No 84
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.57 E-value=7.8e-16 Score=149.54 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=113.0
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPTARKTGT 226 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~aV~~Gt 226 (486)
||+|||+++||||||||+|+|+|.++.+++++||+++| ++.++.|| ..+..++..|+..++.+.++...+
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999986 56666666 223446777887777776665555
Q ss_pred eeeEEEe------------cCeEEEEEeCC-C------CcCeeeecCCcceEEEecC--eEEEEecCchHHHHHHHHHHH
Q psy10990 227 TIVGAIF------------ADGVVLGADTR-A------TDDTIVAEKNCQKIHYMAK--NIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 227 TiIgI~~------------kdGVVlAaDtr-~------t~g~li~~~s~~KI~~I~~--~i~~~gSGs~aD~~vL~~~lr 285 (486)
..++-.. ...+|.|.|.. . ..+.+++.++. +.. +..+.|+|+......|++.+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~-----~~~~~~~~aiGsgs~~a~~~Le~~~- 154 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR-----YEERAGYHAVGSGSLFAKSALKKIY- 154 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCE-----EECCSSEEEESTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCce-----EEeCCCeEEECCCHHHHHHHHHhhc-
Confidence 5443111 11355568864 2 34445555543 334 78889999999999888843
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCC
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~ 340 (486)
...++ .+||.+|+.+|+.+++.+|..||+
T Consensus 155 ----------~~~ms----------------~eeA~~la~~al~~a~~~d~~sg~ 183 (235)
T 1q5q_H 155 ----------SPDSD----------------EETALRAAIESLYDAADDDSATGG 183 (235)
T ss_dssp ----------CTTCC----------------HHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred ----------CCCCC----------------HHHHHHHHHHHHHHHHhhCcccCC
Confidence 23343 899999999999999999999985
No 85
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.56 E-value=3.1e-16 Score=154.16 Aligned_cols=157 Identities=15% Similarity=-0.013 Sum_probs=114.8
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|+|.++. ++++||++++ ++.++.|| ..+..++.+|+.+++.+.
T Consensus 28 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 106 (254)
T 1iru_G 28 KAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNI 106 (254)
T ss_dssp HHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 346799999999999999999999999999996 8999999986 66666666 223456778888888877
Q ss_pred cccccceeeEEEe-------------cCeEEEEEe-CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGAD-TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaD-tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-.. ...+|.|.| .. +..+.+++.++. +..+..+.|+|+......|++.++
T Consensus 107 ~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiGsgs~~a~~~Le~~~~ 181 (254)
T 1iru_G 107 PLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS-----YGYWGCAIGKARQAAKTEIEKLQM 181 (254)
T ss_dssp CHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCE-----EEBSEEEESTTHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCE-----EeeeeEEecCccHHHHHHHHHhcc
Confidence 7776666664221 123555678 32 234445555554 234788899999888888877332
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCC
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~ 340 (486)
..+ +.+||.+|+.+|+..++.+|..+|.
T Consensus 182 -----------~~m----------------s~eea~~la~~al~~~~~~~~~~~~ 209 (254)
T 1iru_G 182 -----------KEM----------------TCRDIVKEVAKIIYIVHDEVKDKAF 209 (254)
T ss_dssp -----------GGC----------------CHHHHHHHHHHHHHHHSCSSSSCCE
T ss_pred -----------CCC----------------CHHHHHHHHHHHHHHHHhhccCCCC
Confidence 122 4899999999999999877665653
No 86
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.56 E-value=2e-15 Score=146.97 Aligned_cols=160 Identities=19% Similarity=0.129 Sum_probs=115.0
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.|.++.+++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 23 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 102 (241)
T 1ryp_D 23 EAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPV 102 (241)
T ss_dssp HHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34679999999999999999999999999999999999999986 66666666 223446778888888777
Q ss_pred cccccceeeEEE------------e-cCeEEEEEeC--C-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAI------------F-ADGVVLGADT--R-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLI 284 (486)
Q Consensus 221 aV~~GtTiIgI~------------~-kdGVVlAaDt--r-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~l 284 (486)
++...+..++-. + ...+|.|.|. . +..+.+++.++. +..+..+.|+|+......|++.+
T Consensus 103 ~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~ 177 (241)
T 1ryp_D 103 TVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY-----SSWSAQTIGRNSKTVREFLEKNY 177 (241)
T ss_dssp CHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCE-----EEeeeEEECCCcHHHHHHHHHhh
Confidence 777666655311 1 1235556785 2 335556666654 23467889999988888887733
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCC
Q psy10990 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342 (486)
Q Consensus 285 r~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nV 342 (486)
+. ....++ .+||.+|+.+|+..++. .||+++
T Consensus 178 ~~--------~~~~ms----------------~eea~~l~~~al~~~~~---~sg~~i 208 (241)
T 1ryp_D 178 DR--------KEPPAT----------------VEECVKLTVRSLLEVVQ---TGAKNI 208 (241)
T ss_dssp CT--------TSCCCS----------------HHHHHHHHHHHHHHHHC---SCSTTE
T ss_pred hc--------ccCCCC----------------HHHHHHHHHHHHHHHhc---CCCCcE
Confidence 00 023443 89999999999998873 666554
No 87
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.54 E-value=3.6e-15 Score=137.83 Aligned_cols=148 Identities=13% Similarity=0.106 Sum_probs=102.3
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-c-ceehhccc-----hhh----hHhHHhHhccCCCccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-D-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~G 225 (486)
||+||++++||||||+|+|+|.|.+|.+++++||+++ + ++.++.|| +.+ ..++..|+.+. +...
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~-----~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNL-----TKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCH-----HHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhcccH-----HHHH
Confidence 8999999999999999999999999999999999999 4 66666666 222 33444444221 1111
Q ss_pred ceeeEE-------E-ecCeEEEEEeCCCCcCeeeecCCcceEEEec--CeEEEEecCchHHHHHHHHHHHHHHHHhHhhc
Q psy10990 226 TTIVGA-------I-FADGVVLGADTRATDDTIVAEKNCQKIHYMA--KNIYCCGAGTAADTQVTTDLIASQLELLKLNT 295 (486)
Q Consensus 226 tTiIgI-------~-~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~--~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~ 295 (486)
..+... . +.-.+++| | .+..+.+++.++. +. ++..+.|||+......|++.++.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~lv~-D-~p~Ly~~d~~G~~-----~~~~~~~~a~Gsgs~~a~~~le~~~~~--------- 139 (171)
T 1m4y_A 76 VELAKDWRTDRVLRRLEALLLVA-D-KENIFIISGNGEV-----IQPDDDAAAIGSGGPYALAAAKALLRN--------- 139 (171)
T ss_dssp HHHHHHHHHCTTGGGCCCEEEEE-C-SSCEEEECTTSCE-----ECCSSSEEEESTTHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhCCCCceEEEEEEE-c-CCEEEEECCCCCE-----EecCCCEEEECCcHHHHHHHHHHhccc---------
Confidence 111100 0 11234445 7 4556666666654 33 34889999999999999986641
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 296 GKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 296 g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
.+++ . .+|+++|+..++.||.+||++++++
T Consensus 140 -~~ms----------------~---~~l~~~al~~a~~rd~~sg~~i~v~ 169 (171)
T 1m4y_A 140 -TDLS----------------A---REIVEKAMTIAGEICIYTNQNIVIE 169 (171)
T ss_dssp -CCCC----------------H---HHHHHHHHHHHHHHCTTCCSCCEEE
T ss_pred -CCCC----------------H---HHHHHHHHHHHHHhCcccCCeEEEE
Confidence 1222 2 4688999999999999999988764
No 88
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.54 E-value=9.3e-16 Score=150.15 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=114.1
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc---------hhhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS---------IGFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~---------~~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+||++++||||||+|+|+|.| ++.+++++||++++ ++.++.|| ..+..++..|+..++.+.
T Consensus 24 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 102 (248)
T 1iru_D 24 EAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPV 102 (248)
T ss_dssp HHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34678999999999999999999999998 67889999999986 66666666 223456778888888877
Q ss_pred cccccceeeEEEe-------------cCeEEEEEe-CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGAD-TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaD-tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr 285 (486)
++...+..++-.. ...+|.|.| .. +..+.+++.++. +..+..+.|+|+......|++.+
T Consensus 103 ~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~-----~~~~~~aiG~gs~~a~~~Le~~~- 176 (248)
T 1iru_D 103 TVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY-----HAWKANAIGRGAKSVREFLEKNY- 176 (248)
T ss_dssp CHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHTTTC-
T ss_pred CHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcE-----EEeeEEEECCCcHHHHHHHHHhh-
Confidence 7776666654221 123555678 32 234455555554 34578889999988888887733
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCc
Q psy10990 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343 (486)
Q Consensus 286 ~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVd 343 (486)
...+. .+.+||.+|+.+|+..++. .||++++
T Consensus 177 ----------~~~m~--------------~s~eea~~la~~al~~~~~---~sg~~i~ 207 (248)
T 1iru_D 177 ----------TDEAI--------------ETDDLTIKLVIKALLEVVQ---SGGKNIE 207 (248)
T ss_dssp ----------CSSTT--------------CSHHHHHHHHHHHHHTTSC---TTSTTCC
T ss_pred ----------ccccc--------------CCHHHHHHHHHHHHHHHHc---CCCCcEE
Confidence 23330 0389999999999998874 4665554
No 89
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.51 E-value=1.9e-15 Score=151.58 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=117.9
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----h----hhhHhHHhHhccCCCcc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----I----GFQKNAFLASKGYSGPT 220 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~----~l~~nl~L~~le~~~~~ 220 (486)
+++++|||+|||+++||||||+|+|+|.|.++.+ +.+||++++ ++.++.|| + .+..++.+|+..++.+.
T Consensus 29 kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i 107 (288)
T 3nzj_F 29 KAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 107 (288)
T ss_dssp HHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3467999999999999999999999999999986 669999986 66666666 2 23446778888888888
Q ss_pred cccccceeeEEEe-------------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHHHHHH
Q psy10990 221 ARKTGTTIVGAIF-------------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIAS 286 (486)
Q Consensus 221 aV~~GtTiIgI~~-------------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~~lr~ 286 (486)
++...+..++-.. ...+|.+.|... ..+.+.+.++. +..+..+.|+|+......|++.++.
T Consensus 108 ~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~-----~~~~~~aiGsgs~~a~~~Lek~~~~ 182 (288)
T 3nzj_F 108 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY-----WGYKGAATGKGRQSAKAELEKLVDH 182 (288)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE-----EEBSEEEESTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCE-----EEcCEEEEcCcHHHHHHHHHHhccc
Confidence 8777777665321 123566788643 24445555554 2357888999999999998885421
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCC
Q psy10990 287 QLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSG 339 (486)
Q Consensus 287 ~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG 339 (486)
+...++ .+||.+|+.+|+..++.+|..+|
T Consensus 183 --------~~~~ms----------------~eEAv~la~~al~~a~~~~~~~~ 211 (288)
T 3nzj_F 183 --------HPEGLS----------------AREAVKQAAKIIYLAHEDNKEKD 211 (288)
T ss_dssp --------CTTCCC----------------HHHHHHHHHHHHHHHGGGGTTSE
T ss_pred --------cCCCCC----------------HHHHHHHHHHHHHHHHhcccCCC
Confidence 333444 89999999999999988776554
No 90
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.50 E-value=1.3e-14 Score=134.65 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=102.0
Q ss_pred ceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeee-c-ceehhccc-----hhh----hHhHHhHhccCCCccccccc
Q psy10990 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYS-D-LIAVTVSS-----IGF----QKNAFLASKGYSGPTARKTG 225 (486)
Q Consensus 157 TTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~-d-~~~~~~A~-----~~l----~~nl~L~~le~~~~~aV~~G 225 (486)
||+|||+++||||||+|+|+|.|.+|.+++++||+++ | ++.++.|| +.+ ..++.+|+....+ .+..-
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~--~~~~l 78 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLK--SAVEL 78 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHH--HHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcCcHHH--HHHHH
Confidence 7999999999999999999999999999999999999 4 66666666 222 3344444431100 00000
Q ss_pred ceee----EEEecCeEEEEEeCCCCcCeeeecCCcceEEEec-CeEEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCc
Q psy10990 226 TTIV----GAIFADGVVLGADTRATDDTIVAEKNCQKIHYMA-KNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPR 300 (486)
Q Consensus 226 tTiI----gI~~kdGVVlAaDtr~t~g~li~~~s~~KI~~I~-~~i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~ 300 (486)
+..+ +...-..+++++| .+..+.+++.++.. ... ++..+.|||+......|++.++. .+++
T Consensus 79 ~~~~~~~~~~r~~~~~l~g~d-~p~Ly~~d~~G~~~---~~~~~~~~a~Gsgs~~a~~~le~~~~~----------~~mt 144 (174)
T 1g3k_A 79 AKDWRTDRALRKLEAMLIVAD-EKESLIITGIGDVV---QPEEDQILAIGSGGNYALSAARALVEN----------TELS 144 (174)
T ss_dssp HHHHHHSTTGGGCCCEEEEEC-SSCEEEEETTTEEE---CCCTTCEEEESTTHHHHHHHHHHHHHH----------CCCC
T ss_pred HHHHHhccCcCcceEEEEEEC-CCEEEEEcCCCcEE---ecCCCcEEEEcccHHHHHHHHHHhccc----------CCCC
Confidence 0000 0000124555667 45556666665542 122 45889999999999999986641 1222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 301 VITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 301 v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
+.+|+++|+..++.||.+||+++++.
T Consensus 145 -------------------~~~l~~~al~~a~~rd~~sg~~i~v~ 170 (174)
T 1g3k_A 145 -------------------AHEIVEKSLRIAGDICVFTNTNFTIE 170 (174)
T ss_dssp -------------------HHHHHHHHHHHHHHHCTTCCSCCEEE
T ss_pred -------------------HHHHHHHHHHHHHHhccccCCceEEE
Confidence 22688999999999999999887653
No 91
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.44 E-value=3.4e-14 Score=140.18 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=106.2
Q ss_pred ccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhh----HhHHhHhccCC-Cc
Q psy10990 151 TARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQ----KNAFLASKGYS-GP 219 (486)
Q Consensus 151 ~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~----~nl~L~~le~~-~~ 219 (486)
+++++|||+|||+++||||||||+| +++++||++++ ++.++.|| +.+. .+..+|...++ .+
T Consensus 22 ~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 93 (259)
T 1q5q_A 22 KGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRD 93 (259)
T ss_dssp HHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3468999999999999999999999 58999999986 66677766 3332 34556655665 36
Q ss_pred ccccccceeeEEE----e--------cCeEEEEEe----CC-CCcCeeeecCCcceEEEecCeEEEEecCchHHHHHHHH
Q psy10990 220 TARKTGTTIVGAI----F--------ADGVVLGAD----TR-ATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282 (486)
Q Consensus 220 ~aV~~GtTiIgI~----~--------kdGVVlAaD----tr-~t~g~li~~~s~~KI~~I~~~i~~~gSGs~aD~~vL~~ 282 (486)
..+...+..++-. | ...+|.++| .. +..+.+++.++..+ ..+..+.|+|+......|++
T Consensus 94 i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~----~~~~~aiG~gs~~a~~~Le~ 169 (259)
T 1q5q_A 94 VTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVD----EQHFVVMGGTTEPIATAMRE 169 (259)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEE----ESSEEEESSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceee----CCCEEEECCChHHHHHHHHh
Confidence 6666665555541 2 123555677 33 33555666665420 35688899999998888888
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc-----ccccCCCCCCc
Q psy10990 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV-----FNDLGSGSNID 343 (486)
Q Consensus 283 ~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi-----~nD~gSG~nVd 343 (486)
.+ ...++ .+||.+|+.+|+..++ .||. ||++++
T Consensus 170 ~~-----------~~~ms----------------~eea~~la~~al~~~~~~~~~~rd~-sg~~ie 207 (259)
T 1q5q_A 170 SY-----------RADLD----------------LEAAVGIAVNALRQGGAGEGEKRNV-DVASLE 207 (259)
T ss_dssp HC-----------CTTCC----------------HHHHHHHHHHHHTTCC--------C-CSSCSE
T ss_pred hc-----------cCCCC----------------HHHHHHHHHHHHHHHhhcccccccC-CCCcEE
Confidence 44 23343 8999999999999999 8998 887654
No 92
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.44 E-value=9.5e-14 Score=136.42 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=102.7
Q ss_pred CccccccceEEEEEeCCeEEEeecCCCCCCceeeecceeeeeeec-ceehhccc-----hhhh----HhHHhHhccCC-C
Q psy10990 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSD-LIAVTVSS-----IGFQ----KNAFLASKGYS-G 218 (486)
Q Consensus 150 ~~~~~tGTTivgv~~~~GVVLaaDsRAT~G~~Va~k~~~KI~~~d-~~~~~~A~-----~~l~----~nl~L~~le~~-~ 218 (486)
.+++++|||+||++++||||||||+| +++++||+++| ++.++.|| +.+. .++.+|++.++ .
T Consensus 21 ~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~ 92 (248)
T 3mi0_A 21 RKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRR 92 (248)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44578999999999999999999999 57999999986 67777766 3333 33566688888 6
Q ss_pred cccccccceeeE-EE---e--------cCeEEEEEeC----C-CCcCeeeecCCcceEEEec-CeEEEEecCchHHHHHH
Q psy10990 219 PTARKTGTTIVG-AI---F--------ADGVVLGADT----R-ATDDTIVAEKNCQKIHYMA-KNIYCCGAGTAADTQVT 280 (486)
Q Consensus 219 ~~aV~~GtTiIg-I~---~--------kdGVVlAaDt----r-~t~g~li~~~s~~KI~~I~-~~i~~~gSGs~aD~~vL 280 (486)
+.++..-+..++ .. + ...+|.++|. . +..+.+++.++. .. .+..+.|+|+......|
T Consensus 93 ~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~-----~~e~~~~a~Gsgs~~a~~~L 167 (248)
T 3mi0_A 93 DVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSI-----ADEPHFVVMGGTTEPIANAL 167 (248)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCE-----EEESSEEEESSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEE-----eecccEEEECccHHHHHHHH
Confidence 666665555554 21 1 1245666886 2 334555565554 33 67888999999999998
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Q psy10990 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGV 332 (486)
Q Consensus 281 ~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi 332 (486)
++.++ ..++ .+||.+|+.+|+..++
T Consensus 168 e~~y~-----------~~mt----------------~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 168 KESYA-----------ENAS----------------LTDALRIAVAALRAGS 192 (248)
T ss_dssp HHHCC-----------TTCC----------------HHHHHHHHHHHHHHC-
T ss_pred HhhcC-----------CCCC----------------HHHHHHHHHHHHHHHH
Confidence 88443 3343 8999999999999987
No 93
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=97.57 E-value=9.3e-06 Score=80.06 Aligned_cols=109 Identities=31% Similarity=0.330 Sum_probs=77.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEE-e-------cCeEEEEEeCCC-CcCeeeecCCcceEEEecCeEEEEecCchH
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAI-F-------ADGVVLGADTRA-TDDTIVAEKNCQKIHYMAKNIYCCGAGTAA 275 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~-~-------kdGVVlAaDtr~-t~g~li~~~s~~KI~~I~~~i~~~gSGs~a 275 (486)
+..++.+|++.++.+..+...+..++-. + ...++.+.|... ..+.+++.++. ...+..+.|+|+..
T Consensus 88 lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~-----~~~~~~aiGsgs~~ 162 (261)
T 3nzj_H 88 IGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST-----DVGYYLSLGSGSLA 162 (261)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE-----EECSEEEESTTHHH
T ss_pred HHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccE-----EecCeEEeccchHH
Confidence 4567888888888777666555544421 1 123566688643 24455555554 34678899999999
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCccc
Q psy10990 276 DTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345 (486)
Q Consensus 276 D~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl~ 345 (486)
....|++.+ ..+++ .|||.+|+.+|+.+++.||.+||++++++
T Consensus 163 a~~~Le~~~-----------~~~ms----------------~eEA~~la~~al~~a~~rD~~sg~~iev~ 205 (261)
T 3nzj_H 163 AMAVLESHW-----------KQDLT----------------KEEAIKLASDAIQAGIWNDLGSGSNVDVC 205 (261)
T ss_dssp HHHHHHHHC-----------CSSCC----------------HHHHHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred HHHHHHHHh-----------ccCCC----------------HHHHHHHHHHHHHHHHhhCCCCCCcEEEE
Confidence 999988844 23443 89999999999999999999999887644
No 94
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=97.25 E-value=0.00012 Score=72.98 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=77.0
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEE-e--------cCeEEEEEeCC--CCcCeeeecCCcceEEEecCeEEEEecCc
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAI-F--------ADGVVLGADTR--ATDDTIVAEKNCQKIHYMAKNIYCCGAGT 273 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~-~--------kdGVVlAaDtr--~t~g~li~~~s~~KI~~I~~~i~~~gSGs 273 (486)
+..++.+|+++++.+.++...+..++-. + ...+|.|.|.. +..+.+++.++. +..+..+.|+|+
T Consensus 134 lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~-----~~~~~~AiGsgs 208 (287)
T 3nzj_K 134 LGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR-----LKGDIFCVGSGQ 208 (287)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCE-----EECSEEEESTTH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceE-----EEcCeEEEecch
Confidence 4567888888888877777666666522 1 12356668842 235556666554 356888899999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCCCCcc
Q psy10990 274 AADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344 (486)
Q Consensus 274 ~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~nVdl 344 (486)
......|++.+ ...++ .+||.+|+++|+.+++.||..||+++++
T Consensus 209 ~~a~~~Le~~y-----------~~dms----------------~eEAi~la~~aL~~a~~rD~~sg~~i~V 252 (287)
T 3nzj_K 209 TFAYGVLDSNY-----------KWDLS----------------VEDALYLGKRSILAAAHRDAYSGGSVNL 252 (287)
T ss_dssp HHHHHHHHTSC-----------CTTCC----------------HHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred HHHHHHHHHhh-----------cCCCC----------------HHHHHHHHHHHHHHHHhhCcCCCCceEE
Confidence 99999888743 23343 8999999999999999999999976553
No 95
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=96.04 E-value=0.0014 Score=65.56 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=61.6
Q ss_pred hhHhHHhHhccCCCcccccccceeeEEE-ec-----------CeEEEEEeCCC-------CcCeeeecCCcceEEEecCe
Q psy10990 205 FQKNAFLASKGYSGPTARKTGTTIVGAI-FA-----------DGVVLGADTRA-------TDDTIVAEKNCQKIHYMAKN 265 (486)
Q Consensus 205 l~~nl~L~~le~~~~~aV~~GtTiIgI~-~k-----------dGVVlAaDtr~-------t~g~li~~~s~~KI~~I~~~ 265 (486)
+..++..|+..++.+..+...+..++-. +. ..+|.|.|... ..+.+++.++. +.-..+
T Consensus 116 lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~---~e~~~~ 192 (291)
T 2jay_A 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGW---NIEEEG 192 (291)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCE---EECSSS
T ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcE---EecCCC
Confidence 3456777877777666655444433311 11 12555678642 34444444433 101456
Q ss_pred EEEEecCchHHHHHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccCCCC
Q psy10990 266 IYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340 (486)
Q Consensus 266 i~~~gSGs~aD~~vL~~~lr~~l~~~~l~~g~~~~v~~la~~ls~~l~~~t~eEA~~Lvr~AI~agi~nD~gSG~ 340 (486)
..+.|+|+......|++.++. .+ +.+||.+|+++|+.+++.+|..||+
T Consensus 193 ~~aiGsgs~~a~~~Le~~~~~-----------~m----------------s~eEAi~la~~aL~~a~~~D~~sg~ 240 (291)
T 2jay_A 193 YQAVGSGSLFAKSSMKKLYSQ-----------VT----------------DGDSGLRVAVEALYDAADDDSATGG 240 (291)
T ss_dssp EEEESTTHHHHHHHHHHHGGG-----------CC----------------SHHHHHHHHHHHHHHC---------
T ss_pred EEEEecCHHHHHHHHHHhcCC-----------CC----------------CHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 788999999999999885532 23 3899999999999999999999884
No 96
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=95.82 E-value=0.0044 Score=61.96 Aligned_cols=39 Identities=33% Similarity=0.551 Sum_probs=32.3
Q ss_pred CcccccccceeeEEEecCeEEEEEeCCCCcCeeeecCCc
Q psy10990 218 GPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 256 (486)
Q Consensus 218 ~~~aV~~GtTiIgI~~kdGVVlAaDtr~t~g~li~~~s~ 256 (486)
..+++++|+|+||++++||||+|+|++.+.+.++...+.
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~ 96 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDV 96 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCC
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCc
Confidence 567899999999999999999999999988766665554
No 97
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=44.22 E-value=3.4 Score=27.24 Aligned_cols=15 Identities=40% Similarity=1.139 Sum_probs=10.3
Q ss_pred ccCccccccCCcccC
Q psy10990 43 CGNHQAIEECPICTG 57 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~ 57 (486)
|-.-.-.++||+||.
T Consensus 10 CkHgyp~~~CP~CtA 24 (32)
T 2bai_A 10 CAHSMTFEECPKCSA 24 (32)
T ss_dssp CSSSSCGGGHHHHHC
T ss_pred HhcCCCcccccccce
Confidence 443445699999984
No 98
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=26.40 E-value=17 Score=29.63 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.7
Q ss_pred ccccCCccc
Q psy10990 21 KCCVPGCHR 29 (486)
Q Consensus 21 ~~~~~~~~~ 29 (486)
.||||||..
T Consensus 6 ~C~V~gC~n 14 (91)
T 2jm3_A 6 TCGFPNCKF 14 (91)
T ss_dssp CCCCTTCCS
T ss_pred eEEeCCCcC
Confidence 799999963
No 99
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=24.38 E-value=11 Score=23.78 Aligned_cols=18 Identities=33% Similarity=0.899 Sum_probs=13.5
Q ss_pred cccccCCcccccccccCC
Q psy10990 20 IKCCVPGCHRFLPRAYCP 37 (486)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (486)
-.||..||-|-=--+.||
T Consensus 8 ~~CClsGCt~QDLL~lCP 25 (26)
T 2h8b_A 8 RYCCLSGCTQQDLLTLCP 25 (26)
T ss_dssp HHHHHTCBCHHHHHTTCC
T ss_pred HHHHhcCCcHHHHHhhCC
Confidence 369999998865556666
No 100
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=21.68 E-value=24 Score=27.56 Aligned_cols=9 Identities=67% Similarity=1.885 Sum_probs=7.6
Q ss_pred cccccCCcc
Q psy10990 20 IKCCVPGCH 28 (486)
Q Consensus 20 ~~~~~~~~~ 28 (486)
-.||||||.
T Consensus 5 ~~C~v~gC~ 13 (81)
T 2lau_A 5 FTCCVPGCY 13 (81)
T ss_dssp CSCCCSSSS
T ss_pred CEEEeCCCc
Confidence 379999995
Done!