RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10990
(486 letters)
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 315 bits (809), Expect = e-106
Identities = 130/278 (46%), Positives = 179/278 (64%), Gaps = 31/278 (11%)
Query: 205 FQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAK 264
+Q+N FLA ++ P A TGTTIVG F +GVV+ ADTR+T IVA+KNC K+H ++
Sbjct: 9 YQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISP 68
Query: 265 NIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLV 324
I+C GAGTAADT+ T LI S +EL L T + PRV++A ++L+Q LF+YQ
Sbjct: 69 KIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-------- 120
Query: 325 RDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
GH+ A L++ GVD TG+HLF+I+ HGS+D + ++GSG
Sbjct: 121 ---------------------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSG 159
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPY 443
SLAAM+V ES+WK ++T+EE KL DAI AG++NDLGSGSN+D+CV++ EYLR Y
Sbjct: 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219
Query: 444 EIANVKGKKDGDYRFKRGTTALLSTQRIPIV-VESEQV 480
NV+ +K Y+F RGTTA+L + I ++ EQV
Sbjct: 220 LTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQEEQV 257
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 303 bits (777), Expect = e-101
Identities = 114/251 (45%), Positives = 159/251 (63%), Gaps = 29/251 (11%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI G +F DGV+LGADTRAT+D++VA+K+C+KIH++A IYCCGAG AADT++TT + A
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S++EL L+TG+ PRV T R+LRQ LFRYQ
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRYQ----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
GHV A+LV+GGVD G L+ ++PHGS +PF +GSG AA+++ E ++PNMT E
Sbjct: 92 GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
++L+ +AI AG+ +DLGSG N+D CVI G + R ++ G YRF GTT +
Sbjct: 152 QELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGRYRFAPGTTPV 211
Query: 466 LSTQRIPIVVE 476
L+ + P+ +E
Sbjct: 212 LTREVRPLTLE 222
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 301 bits (773), Expect = e-101
Identities = 143/251 (56%), Positives = 186/251 (74%), Gaps = 29/251 (11%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI G ++ DG+VLGADTRAT+ +VA+KNC KIH+++ NIYCCGAGTAADT +TT LI+
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S LEL L+TG++PRV+TANR+L+QMLFRY+
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYR----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G++ AALVLGGVD TG HL++IYPHGS+D +P+ TMGSGSLAAM+VFE ++P+M EEE
Sbjct: 92 GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTAL 465
K LV +AIAAG+FNDLGSGSNIDLCVI KN +++LRPY + N KG + G YR ++GTTA+
Sbjct: 152 KNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAV 211
Query: 466 LSTQRIPIVVE 476
L+ + P+ +E
Sbjct: 212 LTEKITPLEIE 222
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 291 bits (747), Expect = 3e-97
Identities = 118/250 (47%), Positives = 161/250 (64%), Gaps = 30/250 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIVG F +GVV+ ADTR+T IVA+KNC K+H ++ I+C GAGTAADT+ T LI
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
S +EL L T + PRV++A ++L+Q LF+YQ
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKYQ----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
GH+ A L++ GVD TG+HLF+I+ HGS+D + ++GSGSLAAM+V ES+WK ++T+EE
Sbjct: 92 GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG-VEYLRPYEIANVKGKKDGDYRFKRGTTA 464
KL DAI AG++NDLGSGSN+D+CV++ EYLR Y NV+ +K Y+F RGTTA
Sbjct: 152 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA 211
Query: 465 LLSTQRIPIV 474
+L + I
Sbjct: 212 VLKESIVNIC 221
Score = 55.4 bits (134), Expect = 5e-09
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVS 201
TTIVG F +GVV+ ADTR+T IVA+KNC L S I +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGA 46
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 275 bits (705), Expect = 5e-90
Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 31/292 (10%)
Query: 171 GADTRATDDTIVAEKNCYLLSYSDLIAVTVSSIGFQKNAFLASKGYSGPTARKTGTTIVG 230
+ D + L+ S + S F + S+ GTT +
Sbjct: 21 DNEQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLA 80
Query: 231 AIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLEL 290
F G+++ D+RAT VA + +K+ + + AG AAD Q + SQ L
Sbjct: 81 FRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRL 140
Query: 291 LKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLCGHVSA 350
+L + V A+++L ++++Y+ G
Sbjct: 141 HELREKERISVAAASKILSNLVYQYKGA---------------------------GLSMG 173
Query: 351 ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVR 410
++ G G ++ + G+ +GSG A V +SN+K +++ E+ L +
Sbjct: 174 TMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGK 233
Query: 411 DAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGT 462
+I A D SG +++L + ++G Y +++ + K + + G+
Sbjct: 234 RSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWK----VKEEEGS 281
Score = 64.0 bits (156), Expect = 1e-11
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
S+ GTT + F G+++ D+RAT VA +
Sbjct: 58 AHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTV 106
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 260 bits (666), Expect = 3e-85
Identities = 48/237 (20%), Positives = 98/237 (41%), Gaps = 31/237 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT + F G+++ D+RAT VA + +++ + + AG AAD Q +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
SQ L +L + V A+++L ++++Y+
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGA--------------------------- 93
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
G ++ G G ++ + G+ +GSG A V +SN+K +++ E+
Sbjct: 94 GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 153
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGT 462
L + +I A D SG +++L + ++G Y +++ + K + + G+
Sbjct: 154 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWK----VKEEEGS 206
Score = 52.6 bits (127), Expect = 4e-08
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TT + F G+++ D+RAT VA +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTV 31
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 259 bits (663), Expect = 8e-85
Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT + F GV++ AD+RAT +A + +K+ + + AG AAD L+A
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
Q + +L + V A++LL M+++Y+ G G
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYK--------------------GMG------ 94
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+S ++ G D G L+ + G+ + ++GSGS+ A V + + ++ E+
Sbjct: 95 --LSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQA 152
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451
L R AI + D SG ++L ++++G + +A++ K
Sbjct: 153 YDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEK 198
Score = 53.0 bits (128), Expect = 3e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TT + F GV++ AD+RAT +A +
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTV 31
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 257 bits (659), Expect = 5e-84
Identities = 11/246 (4%), Positives = 28/246 (11%), Gaps = 32/246 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
+ + + E + + I
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+I + A R
Sbjct: 62 LVKIRSIEKIFQIDDHVAAATSGLVADARVLI---------------------------- 93
Query: 346 GHVSAALVLGGVD-DTGAHLFNIYPHGSS-DTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+ + + + G + K
Sbjct: 94 DRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLF 153
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTT 463
E G ++L + L +
Sbjct: 154 ETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAI--TALTKANEDIKPE 211
Query: 464 ALLSTQ 469
+
Sbjct: 212 NVDVCI 217
Score = 52.6 bits (127), Expect = 5e-08
Identities = 1/31 (3%), Positives = 4/31 (12%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
+ + + E
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAR 32
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 256 bits (656), Expect = 9e-84
Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 29/227 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TT VG + DGVV+ + RAT +A K +KI+ +A + AG+ D Q +I
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ L ++ + P V L +L Y+
Sbjct: 61 IEANLYEIRRERKPTVRAIATLTSNLLNSYRY---------------------------- 92
Query: 346 GHVSAALVLGGVDDTGAHLFNIYP-HGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
L++GG+D G +++I P G+ + GSGSL A V E + P + +E
Sbjct: 93 FPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDE 152
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGK 451
+L AI + + D SG ID+ I ++ P E+ + K
Sbjct: 153 AVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199
Score = 52.6 bits (127), Expect = 4e-08
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TT VG + DGVV+ + RAT +A K
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAA 31
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 255 bits (653), Expect = 2e-83
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 31/225 (13%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI+ F GVV+G+D+R + T V + K+ + + I+C +G+AAD Q D+ A
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
QLEL L + P V+ A +++ + ++Y+
Sbjct: 61 YQLELHGLELEEPPLVLAAANVVKNISYKYR----------------------------- 91
Query: 346 GHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEEC 405
+ A L++ G D G PF GSGS ++ +KP MT EEC
Sbjct: 92 EDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEEC 151
Query: 406 KKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY--LRPYEIANV 448
++ +AI + D SG I L I GV++ + E+
Sbjct: 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKF 196
Score = 52.2 bits (126), Expect = 5e-08
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI+ F GVV+G+D+R + T V +
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVF 31
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 254 bits (651), Expect = 5e-83
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
G +I+ F DGV+LGAD+R T +A + K+ + I+CC +G+AADTQ D
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++ LEL G P TA + +++ + +
Sbjct: 67 IVQYHLELYTSQYGT-PSTETAASVFKELCYENK-------------------------- 99
Query: 343 DLCGHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
+++A +++ G DD ++ I GS +P+ GSGS + N++ NM+
Sbjct: 100 ---DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
+EE ++ +++ + D SG I + V+ GVE L Y
Sbjct: 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFY 198
Score = 58.0 bits (141), Expect = 5e-10
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
G +I+ F DGV+LGAD+R T +A +
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVT 40
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 252 bits (645), Expect = 7e-82
Identities = 39/228 (17%), Positives = 79/228 (34%), Gaps = 29/228 (12%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++G F GVV+ AD + ++ +N +I + + +G AD Q
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQ 65
Query: 283 LIASQLELLKL-NTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSN 341
++ + +L G + L + ++ + +
Sbjct: 66 VLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKM---------------------- 103
Query: 342 IDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESN--WKPN 399
+ +V+GG D + L + G + P G G+ A + +P
Sbjct: 104 ----NPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIAN 447
+++ E + LV + + D S + + + GVE P
Sbjct: 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTET 207
Score = 56.5 bits (137), Expect = 2e-09
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TGT+++G F GVV+ AD + ++ +N
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNI 39
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 251 bits (643), Expect = 8e-82
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTI+ F GVVLGAD+R T + +A + K+ + I+CC +G+AADTQ D +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
QL + + P V TA L ++M +RY+
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRYR----------------------------- 91
Query: 346 GHVSAALVLGGVDDT-GAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+ A +++ G D G ++++ G F GSGS ++ ++ MT+EE
Sbjct: 92 EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEE 151
Query: 405 CKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE--YLRPYEIAN 447
C + +A+A + D SG I L I ++GVE L +I
Sbjct: 152 CLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPK 196
Score = 53.0 bits (128), Expect = 3e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI+ F GVVLGAD+R T + +A +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVT 31
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 250 bits (642), Expect = 2e-81
Identities = 62/231 (26%), Positives = 93/231 (40%), Gaps = 30/231 (12%)
Query: 219 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQ 278
+TGTT VG D V++ + R T + + KN +K+ + AG D Q
Sbjct: 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 279 VTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGS 338
V + ++LEL +L + LL ML + +
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMP------------------- 102
Query: 339 GSNIDLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKP 398
L++GG+ DT H+F+I G S + + GSGS V ES +
Sbjct: 103 ---------YMVQLLVGGI-DTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE 152
Query: 399 NMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPYEIANV 448
MT +E LV AI+A D SG ID+ VI +K+G L +I +
Sbjct: 153 KMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESR 203
Score = 61.9 bits (151), Expect = 4e-11
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 150 PTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
+TGTT VG D V++ + R T + + KN
Sbjct: 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNG 39
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 245 bits (628), Expect = 1e-79
Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 28/222 (12%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
I+G D V+L + T V + + K ++ + AG A DT + I
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+ ++L + + +RQ L + + S
Sbjct: 62 ANIQLYSIREDYELSPQAVSSFVRQELAKS--------------------IRSR------ 95
Query: 346 GHVSAALVLGGVD--DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEE 403
+++GG D L+ I G+ +P+ G S+ + +++P+MT E
Sbjct: 96 RPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTE 155
Query: 404 ECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
E L++ + + + ++ K+G+ + ++
Sbjct: 156 EGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQA 197
Score = 48.7 bits (117), Expect = 6e-07
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
I+G D V+L + T V + +
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSD 32
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 243 bits (623), Expect = 6e-79
Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 33/226 (14%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
++G D V++ +D A + + + + K+ M++ I G A DT + I
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 286 SQLELLKLNTGKIPRVITANRLLRQML---FRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++L K+ G A R+ L R +
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSR-------------------------- 95
Query: 343 DLCGHVSAALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMT 401
L+L G D+ G L+ + + PF G G+ +S+ + + P ++
Sbjct: 96 ---TPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTIS 152
Query: 402 EEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIAN 447
E +L+R + + + + +I KNG+ L
Sbjct: 153 RERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPK 198
Score = 48.7 bits (117), Expect = 7e-07
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
++G D V++ +D A + + + +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDH 32
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 238 bits (611), Expect = 4e-77
Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 37/233 (15%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G ++ + V + AD R + + QKI M +Y AG A D Q
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343
+ +L L +L G+ + T ++ +L+ +
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-------------------------- 100
Query: 344 LCGHVSAALVLGGVDDTGA--HLFNIYPHGSS-DTVPFCTMGSGSLAAMSVFESNWKPNM 400
G V+ G+D + ++ G T F G+ + + ES W+PNM
Sbjct: 101 --GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNM 158
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453
+ + + A+ V D SG + + +I+K+ + +K + D
Sbjct: 159 DPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI------TTRTLKARMD 205
Score = 53.7 bits (130), Expect = 2e-08
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
G ++ + V + AD R + +
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDF 39
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 238 bits (610), Expect = 9e-77
Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 44/241 (18%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
G TI+ D ++ +DTR ++ + ++ K + + +G D T
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+I ++L++ K + K +L +L+ +
Sbjct: 67 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRF------------------------- 101
Query: 343 DLCGHVSAALVLGGVDDTG-AHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESN------ 395
++GG+D+ G +++ P GS F GS S + ++
Sbjct: 102 ---FPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNM 158
Query: 396 ---WKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKK 452
++ + +LV+D + D+ +G + +C++ K G+ V +K
Sbjct: 159 QNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI------REETVSLRK 212
Query: 453 D 453
D
Sbjct: 213 D 213
Score = 54.2 bits (131), Expect = 1e-08
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
G TI+ D ++ +DTR ++ + ++
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDS 40
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 239 bits (610), Expect = 1e-75
Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 41/279 (14%)
Query: 201 SSIGFQKNAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIH 260
+ IG + ++ G GTTIV + GV+L D RAT ++A ++ + ++
Sbjct: 41 NRIGHRSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVY 100
Query: 261 YMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEEC 320
+ AGTA L A +LE + G L M+
Sbjct: 101 VTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA-- 158
Query: 321 KKLVRDAIAAGVFNDLGSGSNIDLCGHVSAALVLGGVD------DTGAHLFNIYPHGS-- 372
++ +L G D + + G
Sbjct: 159 -----------------------AMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRY 195
Query: 373 SDTVPFCTMGSGSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSG-------S 425
+ + +GSGSL A S + + P+ EE + +++ +D +G
Sbjct: 196 EERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGI 255
Query: 426 NIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTA 464
I + G ++ + + ++ R ++G +A
Sbjct: 256 YPTAVTITQAGAVHVSEETTSEL-ARRIVAERTEQGGSA 293
Score = 63.8 bits (155), Expect = 2e-11
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 139 NAFLASKGYSGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIA 197
++ G GTTIV + GV+L D RAT ++A ++ + + A
Sbjct: 48 HSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSA 107
Query: 198 VTVS 201
++
Sbjct: 108 AGIA 111
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 229 bits (586), Expect = 6e-73
Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 41/254 (16%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIA 285
TTIV + GV+L D RAT ++A ++ +K++ + AGTA L A
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 286 SQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDLC 345
+LE + G L M+
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGA-------------------------AM 95
Query: 346 GHVSAALVLGGVD------DTGAHLFNIYPHGS--SDTVPFCTMGSGSLAAMSVFESNWK 397
++ +L G D + + G + + +GSGSL A S + +
Sbjct: 96 QGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 155
Query: 398 PNMTEEECKKLVRDAIAAGVFNDLGSG-------SNIDLCVIKKNGVEYLRPYEIANVKG 450
P+ EE + +++ +D +G I + G ++ + +
Sbjct: 156 PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSEL-A 214
Query: 451 KKDGDYRFKRGTTA 464
++ R ++G +A
Sbjct: 215 RRIVAERTEQGGSA 228
Score = 49.8 bits (119), Expect = 5e-07
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTIV + GV+L D RAT ++A ++
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDV 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 223 bits (570), Expect = 1e-70
Identities = 38/239 (15%), Positives = 87/239 (36%), Gaps = 38/239 (15%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++ + +GV++ AD + +++ +++ + N +G +D Q
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIER 65
Query: 283 LIASQLELLKLN-----TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLG 337
L+ + + + L ++++ + + N L
Sbjct: 66 LLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSK--------------MNPL- 110
Query: 338 SGSNIDLCGHVSAALVLGGVDDTGAH-LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396
A+++ GV G L + G + + P G G+ A +
Sbjct: 111 -----------WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159
Query: 397 K-----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANVK 449
P T + ++ + +A+ + D S N L +I KN G+ + + ++ N+K
Sbjct: 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 218
Score = 52.7 bits (127), Expect = 5e-08
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TGT+++ + +GV++ AD + +++
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGV 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 220 bits (562), Expect = 2e-69
Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 53/249 (21%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G TI+G D VL DTR D + + K+ NI G AAD
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67
Query: 284 IASQLELLKLN-TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
+ ++ + K + +A R ++ +L+ +
Sbjct: 68 FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRF------------------------- 102
Query: 343 DLCGHVSAALVLGGVDDTGA-HLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWK---- 397
++ G+D+ G +++ P GS + G+ + M ++
Sbjct: 103 ---FPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQ 159
Query: 398 -------------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYE 444
++ EE KLVRD+ + + G +++ ++ K+GV
Sbjct: 160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGV------R 213
Query: 445 IANVKGKKD 453
+ K+D
Sbjct: 214 KEFYELKRD 222
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 219 bits (560), Expect = 1e-68
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 38/239 (15%)
Query: 223 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTD 282
TGT+++ + +GV++ AD + +++ +++ + N +G +D Q
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIER 98
Query: 283 LIASQLELLKLN-----TGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLG 337
L+ + + + L ++++ + N L
Sbjct: 99 LLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRR--------------SKMNPL- 143
Query: 338 SGSNIDLCGHVSAALVLGGVDDTGAH-LFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNW 396
A+++ GV G L + G + + P G G+ A +
Sbjct: 144 -----------WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 192
Query: 397 K-----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANVK 449
P T + ++ + +A+ + D S N L +I KN G+ + + ++ N+K
Sbjct: 193 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 251
Score = 49.7 bits (119), Expect = 6e-07
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 154 KTGTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TGT+++ + +GV++ AD + +++
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGV 72
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 210 bits (538), Expect = 4e-66
Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 38/233 (16%)
Query: 224 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDL 283
G +V D V + D R ++ +KI + +++ G A D ++
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65
Query: 284 IASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNID 343
+ L KL + T +L+ L+ +
Sbjct: 66 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-------------------------- 99
Query: 344 LCGHVSAALVLGGVDDTGA--HLFNIYPHGSSDTVP-FCTMGSGSLAAMSVFESNWKPNM 400
G V+ G++ + G D F G+ S + ES ++PN+
Sbjct: 100 --GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNL 157
Query: 401 TEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKD 453
E+ + + A+ D SG + +IKK+ V +K ++D
Sbjct: 158 EPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEV------VKRYLKMRQD 204
Score = 51.1 bits (123), Expect = 1e-07
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 155 TGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
G +V D V + D R ++ + + + + ++
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGIT 53
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 213 bits (544), Expect = 5e-66
Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 48/251 (19%)
Query: 217 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAAD 276
G GTTIV + GVV+ D R+T +++ ++ +K++ AGTAA
Sbjct: 49 GGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAV 108
Query: 277 TQVTTDLIASQLELLKLNTGKIPRVITANRLL----RQMLFRYQEEECKKLVRDAIAAGV 332
L A +LE + G L R L
Sbjct: 109 AVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAM---------------- 152
Query: 333 FNDLGSGSNIDLCGHVSAALVLGGVD------DTGAHLFNIYPHG--SSDTVPFCTMGSG 384
+ A +L G D + + + G + + + +GSG
Sbjct: 153 -------------QGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG 199
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDL-------CVIKKNGV 437
SL A S + + + ++ +A+ +D +G + +I +G
Sbjct: 200 SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGA 259
Query: 438 EYLRPYEIANV 448
+ IA +
Sbjct: 260 VDVPESRIAEL 270
Score = 58.0 bits (140), Expect = 2e-09
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 148 SGPTARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSY-SDLIAVTVS 201
G GTTIV + GVV+ D R+T +++ ++ + D A ++
Sbjct: 49 GGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIA 103
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 123 bits (311), Expect = 1e-32
Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 33/221 (14%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
G ++V F DGV+ A+ +T K+ + + G + +
Sbjct: 23 GIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENL 74
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
++ + + R L + + +
Sbjct: 75 RRAGIVHADMRGYSYDRRDVTG---RSLANAYAQTLGTIFTEQPKP-------------- 117
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGS-SDTVPFCTMGSGSLAAMSVFESNWKPN 399
+ A V L+ I GS D F MG + + +++ +
Sbjct: 118 ---YEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRAD 174
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSG----SNIDLCVIKKNG 436
+ E + +A+ G + +++++ V+ ++
Sbjct: 175 LDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSR 215
Score = 35.7 bits (82), Expect = 0.020
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATD 178
G ++V F DGV+ A+ +T
Sbjct: 23 GIARGRSVVVLTFRDGVLFVAENPSTA 49
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 115 bits (288), Expect = 2e-29
Identities = 31/225 (13%), Positives = 66/225 (29%), Gaps = 35/225 (15%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
++V +A GV+ A+ + QKI + + AG +
Sbjct: 23 GIARAKSVVALAYAGGVLFVAENPSRS--------LQKISELYDRVGFAAAGKFNEFDN- 73
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGS 340
L ++ R R L + + + +
Sbjct: 74 --LRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCV------- 124
Query: 341 NIDLCGHVSAALVLGGVDDTGAHLFNIYPHGS-SDTVPFCTMGSGSLAAMSVFESNWKPN 399
A V + L+ I GS +D F MG + + + ++ N
Sbjct: 125 ----------AEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAEN 174
Query: 400 MTEEECKKLVRDAIAAGVFNDLGSG------SNIDLCVIKKNGVE 438
+ + ++ A+ AG + G +++++ V+ N
Sbjct: 175 ASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPR 219
Score = 33.8 bits (77), Expect = 0.088
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATD 178
++V +A GV+ A+ +
Sbjct: 23 GIARAKSVVALAYAGGVLFVAENPSRS 49
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 79.3 bits (195), Expect = 2e-17
Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 39/195 (20%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKN-IYCCGAGTAADTQVTTDLI 284
TTIV VV+G D + + V + N +K+ + + AG AD +L
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
+LE+ + + K + + + L + +
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLE---------------------------- 92
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
+ A + TG +GSG A+S TE
Sbjct: 93 -AMLIVADEKESLIITGIGDVVQPEED-----QILAIGSGGNYALSAAR--ALVENTELS 144
Query: 405 CKKLVRDA--IAAGV 417
++V + IA +
Sbjct: 145 AHEIVEKSLRIAGDI 159
Score = 38.8 bits (90), Expect = 0.001
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTIV VV+G D + + V + N
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNA 31
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 78.0 bits (193), Expect = 1e-16
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 56/241 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A G VG A+GVVL + + K+ + K+I +G D +V
Sbjct: 27 AVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV-HKVEPITKHIGLVYSGMGPDYRVL 85
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
R + + +E +LV+
Sbjct: 86 VH---------------RARKLAQQ-------YYLVYQEPIPTAQLVQR----------- 112
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ + +L++ G ++ +LF P G+ MG
Sbjct: 113 ------VASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNY 166
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
+ + E + ++ E+ + + NI++ + + G L P E+
Sbjct: 167 VNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTE-DNIEVGICNEAGFRRLTPTEV 225
Query: 446 A 446
Sbjct: 226 K 226
Score = 30.2 bits (69), Expect = 1.2
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A G VG A+GVVL + + + + I + S
Sbjct: 27 AVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYS 76
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 73.9 bits (181), Expect = 1e-15
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 41/213 (19%)
Query: 225 GTTIVGAIFADGVVLGADTRAT-DDTIVAEKNCQKIHYMAKNIYCCG-AGTAADTQVTTD 282
TTI + D + T +V + +K+ + G AG+ AD +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 283 LIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNI 342
++LE N + + ++L + + + +
Sbjct: 65 KFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLE-----------------------AML 101
Query: 343 DLCGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTE 402
+ + LV G + I P +GSG A++ + K
Sbjct: 102 IVMNQDTLLLVSGTGE-------VIEPDD-----GILAIGSGGNYALAAGRALKKHAGES 149
Query: 403 EECKKLVRDA--IAAGVFNDLGSGSNIDLCVIK 433
++ R A A + + + I L ++
Sbjct: 150 MSASEIARAALETAGEI--CVYTNDQIILEELE 180
Score = 38.4 bits (89), Expect = 0.002
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 156 GTTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI + D + T V K+
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHT 36
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 73.8 bits (182), Expect = 5e-15
Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 36/236 (15%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G ++GV L + R T + +KI + +I C +G AD +
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI-EKIVEIDAHIGCAMSGLIADAKT- 87
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIA--AGVFNDLG 337
LI RV T N F Y E + + + A++ A F +
Sbjct: 88 --LI------------DKARVETQNHW-----FTYNETMTVESVTQ-AVSNLALQFGEED 127
Query: 338 SGSNIDL--CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPF--CTMGSGSLAAMSVFE 393
+ G AL+ GGVD+ G LF++ P G+ V +GS S A S +
Sbjct: 128 ADPGAMSRPFG---VALLFGGVDEKGPQLFHMDPSGTF--VQCDARAIGSASEGAQSSLQ 182
Query: 394 SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKN-GVEYLRPYEIANV 448
+ +MT +E K + + L + +NI+L ++ E+ V
Sbjct: 183 ELYHKSMTLKEAIKSSLIILKQVMEEKLNA-TNIELATVQPGQNFHMFTKEELEEV 237
Score = 29.8 bits (68), Expect = 1.7
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A K G+T +G ++GV L + R T + ++ I +S
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMS 79
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 71.9 bits (177), Expect = 2e-14
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G FA+GV+L +D + I +KI + + +G AD +V
Sbjct: 30 AVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDDYVAAVTSGLVADARVL 88
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
D R+ + + LV+
Sbjct: 89 VD---------------FARISAQQ-------EKVTYGSLVNIENLVKR----------- 115
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ + +L+ G+D G LF+ P G+ + +GSG
Sbjct: 116 ------VADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGK 169
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
A +S E +K N+ E+E L A+ + + ++ I
Sbjct: 170 DAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN 219
Score = 31.1 bits (71), Expect = 0.58
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A K G+T +G FA+GV+L +D + I + D +A S
Sbjct: 30 AVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTS 79
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 72.0 bits (177), Expect = 2e-14
Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 55/242 (22%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G T +G +GV+L AD R + + +KI+ + ++I +G AD +V
Sbjct: 30 AVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTI-EKIYKIDEHICAATSGLVADARVL 88
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIAAGVFNDLGSG 339
D R+ Y K+L +
Sbjct: 89 ID---------------RARIEAQINR-----LTYDIPITVKELAKK------------- 115
Query: 340 SNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLA 387
+C +L++ GV++ L+ P G+ +G G +A
Sbjct: 116 ----ICDFKQQYTQYGGVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATAIGMGRMA 170
Query: 388 AMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK--NGVEYLRPYEI 445
FE ++ +++ ++ L A+ + ++L NI++ +K + + P E+
Sbjct: 171 VTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL-VPENIEVGYVKVDDRTFKEVSPEEL 229
Query: 446 AN 447
Sbjct: 230 KP 231
Score = 31.5 bits (72), Expect = 0.44
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A K G T +G +GV+L AD R + + + + I S
Sbjct: 30 AVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATS 79
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 71.6 bits (176), Expect = 2e-14
Identities = 41/239 (17%), Positives = 86/239 (35%), Gaps = 51/239 (21%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
+ T +G + +DG+VL A+ + T + + + +K++ + I AG AD ++
Sbjct: 27 SISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI- 85
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIAAGVFNDLGSG 339
LI R+ N L Y E+ + LVR
Sbjct: 86 --LI------------NTARIHAQN-----YLKTYNEDIPVEILVRR------------- 113
Query: 340 SNIDLCGHVSA------------ALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGSGSL 386
L + + G DD G L+ P G+ ++G+ +
Sbjct: 114 ----LSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTS 169
Query: 387 AAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPYEI 445
AA ++ + ++K +M ++ +L ++ + + ++ I+K + +I
Sbjct: 170 AAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 228
Score = 29.2 bits (66), Expect = 2.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATD 178
+ T +G + +DG+VL A+ + T
Sbjct: 27 SISHAGTAIGIMASDGIVLAAERKVTS 53
Score = 72.0 bits (177), Expect = 3e-14
Identities = 49/234 (20%), Positives = 83/234 (35%), Gaps = 57/234 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + GTT +G DGVVL D R T + +KI + ++ +G AD +V
Sbjct: 34 AVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSI-EKIFQIDDHVAAATSGLVADARV- 91
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
LI R+ +R E + L +
Sbjct: 92 --LI------------DRARLEAQI-------YRLTYGEEISIEMLAKK----------- 119
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+C A +L++ G+D A LF P G+ +GSG
Sbjct: 120 ------ICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGR 173
Query: 386 LAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY 439
M + E ++ ++T +E +L A+ D+ N+D+C+I ++
Sbjct: 174 PVVMELLEKEYRDDITLDEGLELAITALTK-ANEDIKP-ENVDVCIITVKDAQF 225
Score = 31.5 bits (72), Expect = 0.52
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A + GTT +G DGVVL D R T + + D +A S
Sbjct: 34 AVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATS 83
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 70.8 bits (174), Expect = 5e-14
Identities = 47/245 (19%), Positives = 75/245 (30%), Gaps = 58/245 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + +T +G DGVV G + N +++ + +++ AG AD +
Sbjct: 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN-KRLFNVDRHVGMAVAGLLADARSL 87
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
D I R +N FR K L
Sbjct: 88 AD---------------IAREEASN-------FRSNFGYNIPLKHLADR----------- 114
Query: 338 SGSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSG 384
+ +V A + +LG + GA L+ I P G S C +G
Sbjct: 115 ------VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKA 168
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKK--NGVEYLRP 442
AA + E MT + K V I ++L + + NG + P
Sbjct: 169 RQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 228
Query: 443 YEIAN 447
+I
Sbjct: 229 KDIRE 233
Score = 32.7 bits (75), Expect = 0.23
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A + +T +G DGVV G + N L + + + V+
Sbjct: 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVA 78
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 69.2 bits (170), Expect = 1e-13
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 34/235 (14%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T +G +GVVLG + RAT + ++ +KI + ++I C +G AD +
Sbjct: 22 AIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI-EKIVEIDRHIGCAMSGLTADARSM 80
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIA--AGVFNDLG 337
+ R Y E+ + L + ++ A F +
Sbjct: 81 IE---------------HARTAAVTHN-----LYYDEDINVESLTQ-SVCDLALRFGEGA 119
Query: 338 SGSNIDLC---GHVSAALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFE 393
SG + G AL++ G D D G LF+ P G+ +GSGS A +
Sbjct: 120 SGEERLMSRPFG---VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELL 176
Query: 394 SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRPYEIAN 447
+ W ++T +E + LV + V + +N L I K++G + + A
Sbjct: 177 NEWHSSLTLKEAELLVLKILKQ-VMEEKLDENNAQLSCITKQDGFKIYDNEKTAE 230
Score = 29.6 bits (67), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A K G+T +G +GVVLG + RAT + ++ ++ I +S
Sbjct: 22 AIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMS 71
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 69.2 bits (170), Expect = 2e-13
Identities = 44/249 (17%), Positives = 82/249 (32%), Gaps = 58/249 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G T +G +GVV+ + +++ ++E K+ + +I +G D
Sbjct: 27 AVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETL-SKVSLLTPDIGAVYSGMGPDY--- 82
Query: 281 TDLIASQLELLKLNTGKIPRVITAN-RLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDL 336
RV+ R + ++ E K LV +
Sbjct: 83 -------------------RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSE---------- 113
Query: 337 GSGSNIDLCGHVSA------------ALVLGGVDD-TGAHLFNIYPHGSSDTVPFCTMGS 383
+ + +L++ G D+ G L+ + P GS +G
Sbjct: 114 -------VAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGK 166
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYLRPY 443
GS+AA + E W + E+ + + V + I+L +I + L
Sbjct: 167 GSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNG-DTIELAIIGDENPDLLGYT 225
Query: 444 EIANVKGKK 452
I KG +
Sbjct: 226 GIPTDKGPR 234
Score = 30.3 bits (69), Expect = 1.4
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A K G T +G +GVV+ + +++ ++E + + I S
Sbjct: 27 AVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYS 76
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 65.0 bits (159), Expect = 4e-12
Identities = 45/247 (18%), Positives = 78/247 (31%), Gaps = 61/247 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K GT VG + VVLG + R+T K+ + ++ +G AD+++
Sbjct: 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRI- 82
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
LI + RV + R E+ + L R
Sbjct: 83 --LI------------EKARVEAQS-------HRLTLEDPVTVEYLTRY----------- 110
Query: 338 SGSNIDLCGHVSA------------ALVLGGVD--DTGAHLFNIYPHGSSDTVPFCTMGS 383
+ G + ++ G D D L+ P G + T+G
Sbjct: 111 ------VAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGR 164
Query: 384 GSLAAMSVFESNWKPNMTEEECKKLVRDAIAA--GVFNDLGSGSNIDLCVIKK-NGVEYL 440
S E N+ ++ V+ + + V NI++ V+K + + L
Sbjct: 165 NSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT--GAKNIEITVVKPDSDIVAL 222
Query: 441 RPYEIAN 447
EI
Sbjct: 223 SSEEINQ 229
Score = 30.0 bits (68), Expect = 1.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATD 178
A K GT VG + VVLG + R+T
Sbjct: 24 AVKRGTCAVGVKGKNCVVLGCERRSTL 50
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 64.5 bits (158), Expect = 6e-12
Identities = 28/247 (11%), Positives = 61/247 (24%), Gaps = 64/247 (25%)
Query: 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281
+T + D V+ + + D + I +++ I G D +
Sbjct: 27 NQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV-SYIFCISRTIGMVVNGPIPDARNAA 85
Query: 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLGS 338
+ A FRY+ C L +
Sbjct: 86 L---------------RAKAEAAE-------FRYKYGYDMPCDVLAKR------------ 111
Query: 339 GSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ L VD + G ++ P G G
Sbjct: 112 -----MANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQ 166
Query: 386 LAAMSVFESNWK-------PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVE 438
+ E+++K + E+ + + + + +++++ V K+
Sbjct: 167 QEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSK-NDLEVGVATKDKFF 225
Query: 439 YLRPYEI 445
L I
Sbjct: 226 TLSAENI 232
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
+T + D V+ + + D + Y+ S I + V+
Sbjct: 27 NQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVN 75
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 62.3 bits (151), Expect = 1e-11
Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 40/194 (20%)
Query: 226 TTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCG-AGTAADTQVTTDLI 284
TTI+ V+G D + T + V + N +K+ + + G AG+ AD D
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 285 ASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEECKKLVRDAIAAGVFNDLGSGSNIDL 344
++L N L + + ++ +++R A + D + I
Sbjct: 61 EAKLREWGGN------------LTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISG 108
Query: 345 CGHVSAALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGSLAAMSVFESNWKPNMTEEE 404
G V I P +GSG A++ ++ + T+
Sbjct: 109 NGEV------------------IQPDD-----DAAAIGSGGPYALAAAKALLR--NTDLS 143
Query: 405 CKKLVRDA--IAAG 416
+++V A IA
Sbjct: 144 AREIVEKAMTIAGE 157
Score = 35.3 bits (81), Expect = 0.017
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 157 TTIVGAIFADGVVLGADTRATDDTIVAEKNC 187
TTI+ V+G D + T + V + N
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNA 31
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 63.5 bits (155), Expect = 2e-11
Identities = 48/247 (19%), Positives = 89/247 (36%), Gaps = 57/247 (23%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A T +G + DGV+L A+ R + +KI+ + +++ C AG +D V
Sbjct: 27 AIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVL 86
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
T+ R+I + Q +E C++LV
Sbjct: 87 TN---------------ELRLIAQR-------YLLQYQEPIPCEQLVTA----------- 113
Query: 338 SGSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSG 384
LC A +L+ G D G L+ P G+ +G+
Sbjct: 114 ------LCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNN 167
Query: 385 SLAAMSVFESNWK-PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI-KKNGVEYLRP 442
S AA+S+ + ++K MT + L + + S +++ + ++NG +R
Sbjct: 168 SAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRV 227
Query: 443 YEIANVK 449
+ V+
Sbjct: 228 LKQKEVE 234
Score = 28.1 bits (63), Expect = 5.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATD 178
A T +G + DGV+L A+ R
Sbjct: 27 AIGHAGTCLGILANDGVLLAAERRNIH 53
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 62.3 bits (152), Expect = 3e-11
Identities = 45/246 (18%), Positives = 78/246 (31%), Gaps = 61/246 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + GTT +G DGVV + T +V +KN KI + ++I C +G D +
Sbjct: 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHL 84
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
+ R A+ F+ +
Sbjct: 85 VN---------------RGREEAAS-------FKKLYKTPIPIPAFADR----------- 111
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
L +V A + + GGVD GAHL+ + P GS G G
Sbjct: 112 ------LGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGR 165
Query: 386 LAAMSVFE---SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI---KKNGVEY 439
+A + E + ++ E K I ++ +++ + NG+
Sbjct: 166 QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK 225
Query: 440 LRPYEI 445
++
Sbjct: 226 FVKGDL 231
Score = 31.8 bits (73), Expect = 0.42
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A + GTT +G DGVV + T +V +KN + I S
Sbjct: 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYS 75
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 62.8 bits (153), Expect = 4e-11
Identities = 45/246 (18%), Positives = 78/246 (31%), Gaps = 61/246 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A + GTT +G DGVV + T +V +KN KI + ++I C +G D +
Sbjct: 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHL 88
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
+ R A+ F+ +
Sbjct: 89 VN---------------RGREEAAS-------FKKLYKTPIPIPAFADR----------- 115
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
L +V A + + GGVD GAHL+ + P GS G G
Sbjct: 116 ------LGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGR 169
Query: 386 LAAMSVFE---SNWKPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVI---KKNGVEY 439
+A + E + ++ E K I ++ +++ + NG+
Sbjct: 170 QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK 229
Query: 440 LRPYEI 445
++
Sbjct: 230 FVKGDL 235
Score = 31.9 bits (73), Expect = 0.37
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A + GTT +G DGVV + T +V +KN + I S
Sbjct: 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYS 79
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 61.9 bits (151), Expect = 5e-11
Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 63/236 (26%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATD---DTIVAEKNCQKIHYMAKNIYCCGAGTAADT 277
A K G+ VG VL A R D +KI +++ AG A D
Sbjct: 27 AIKQGSVTVGLRSNTHAVLVALKRNADELSSYQ------KKIIKCDEHMGLSLAGLAPDA 80
Query: 278 QVTTDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEE-ECKKLVRDAIAAGVFNDL 336
+V ++ R + + ++
Sbjct: 81 RVLSN---------------YLRQQCNYSS-----LVFNRKLAVERAGHL---------- 110
Query: 337 GSGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSG 384
LC L++ G D +GAHL P G+ + +G+
Sbjct: 111 -------LCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGAR 163
Query: 385 SLAAMSVFESNWK----PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNG 436
S A + E + +E K +AI+ + ++ + N+ + ++ K+
Sbjct: 164 SQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDT 219
Score = 28.7 bits (65), Expect = 3.9
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATD 178
A K G+ VG VL A R D
Sbjct: 27 AIKQGSVTVGLRSNTHAVLVALKRNAD 53
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 61.4 bits (150), Expect = 6e-11
Identities = 36/245 (14%), Positives = 69/245 (28%), Gaps = 61/245 (24%)
Query: 222 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTT 281
+ G T V D V+ + D + + + + +NI C G AD++
Sbjct: 33 NQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV-THLFKITENIGCVMTGMTADSRSQV 91
Query: 282 DLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLGS 338
R AN ++Y+ L +
Sbjct: 92 Q---------------RARYEAAN-------WKYKYGYEIPVDMLCKR------------ 117
Query: 339 GSNIDLCGHVSA------------ALVLGGVD-DTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ ++L G+D + G ++ P G G
Sbjct: 118 -----IADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQ 172
Query: 386 LAAMSVFESNWK--PNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEY--LR 441
+ S E K + T E+ + ++ + D S I++ V+ ++ L
Sbjct: 173 TESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF-KPSEIEVGVVTVENPKFRILT 231
Query: 442 PYEIA 446
EI
Sbjct: 232 EAEID 236
Score = 29.1 bits (66), Expect = 3.2
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 153 RKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
+ G T V D V+ + D + + +L ++ I ++
Sbjct: 33 NQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMT 81
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 61.9 bits (151), Expect = 6e-11
Identities = 41/247 (16%), Positives = 76/247 (30%), Gaps = 61/247 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+ VG VL A RA + +K KI ++ +I AG AD ++
Sbjct: 28 AVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK---KILHVDNHIGISIAGLTADARL- 83
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
L R + R+ + +LV
Sbjct: 84 --LC------------NFMRQECLD-------SRFVFDRPLPVSRLVSL----------- 111
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGAHLFNIYPHGSSDTVPFCTMGSGS 385
+ L++ G DD G H+F P + ++G+ S
Sbjct: 112 ------IGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARS 165
Query: 386 LAAMSVFESNWKPNM--TEEECKKLVRDAIAAGVFNDLG-SGSNIDLCVIKKN-GVEYLR 441
+A + E + M E K A+ + + + N+ + ++ K+
Sbjct: 166 QSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYD 225
Query: 442 PYEIANV 448
+++
Sbjct: 226 DDDVSPF 232
Score = 28.8 bits (65), Expect = 3.8
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATD 178
A K G+ VG VL A RA
Sbjct: 28 AVKQGSATVGLKSKTHAVLVALKRAQS 54
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 59.9 bits (146), Expect = 3e-10
Identities = 47/243 (19%), Positives = 83/243 (34%), Gaps = 60/243 (24%)
Query: 221 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVT 280
A K G+T VG D VVLG + ++ +KI + N+ AG AD ++
Sbjct: 25 AVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RKICALDDNVCMAFAGLTADARI- 82
Query: 281 TDLIASQLELLKLNTGKIPRVITANRLLRQMLFRYQEEE---CKKLVRDAIAAGVFNDLG 337
+I RV + R E+ + + R
Sbjct: 83 --VI------------NRARVECQS-------HRLTVEDPVTVEYITRY----------- 110
Query: 338 SGSNIDLCGHVSA------------ALVLGGVDDTGA-HLFNIYPHGSSDTVPFCTMGSG 384
+ + ++ G D G L+ P G+ +G G
Sbjct: 111 ------IASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRG 164
Query: 385 SLAAMSVFESNWKPNMTEEECKKLVRDAIAAGVFNDLGSGS-NIDLCVIKKN-GVEYLRP 442
+ + E N+ E + ++ I A + + SG NI+L V++++ ++ L P
Sbjct: 165 AKSVREFLEKNYTDEAIETD-DLTIKLVIKA-LLEVVQSGGKNIELAVMRRDQSLKILNP 222
Query: 443 YEI 445
EI
Sbjct: 223 EEI 225
Score = 29.9 bits (68), Expect = 1.4
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 152 ARKTGTTIVGAIFADGVVLGADTRATDDTIVAEKNCYLLSYSDLIAVTVS 201
A K G+T VG D VVLG + ++ + + D + + +
Sbjct: 25 AVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFA 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 38/254 (14%), Positives = 80/254 (31%), Gaps = 83/254 (32%)
Query: 263 AKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITAN------RLLRQ----ML 312
A++++ AD S L+++ N P +T + + +R+ M+
Sbjct: 1642 AQDVW-----NRADNHFKDTYGFSILDIVINN----PVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 313 FRYQEE---ECKKLVRD-------------------------AIAA---GVFNDLGSGSN 341
F + + +K+ ++ A+ F DL S
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 342 ID----LCGHVS----AALV-LGGV---DDTGAHLFNIYPHGS--SDTVPFCTMGSGSLA 387
I GH S AAL L V + + ++ G VP +G +
Sbjct: 1753 IPADATFAGH-SLGEYAALASLADVMSIESL-VEV--VFYRGMTMQVAVPRDELGRSNYG 1808
Query: 388 AMSVFESNWKPNMTEEECKKLVRDAIAA--GVF----NDLGSGSNIDLCVI--KKNGVEY 439
+++ + ++E + +V + + G N V ++
Sbjct: 1809 MIAINPGRVAASFSQEALQYVV-ERVGKRTGWLVEIVNYNVENQQY---VAAGDLRALDT 1864
Query: 440 LRPYEIAN-VKGKK 452
+ + N +K +K
Sbjct: 1865 VT--NVLNFIKLQK 1876
Score = 42.3 bits (99), Expect = 3e-04
Identities = 43/198 (21%), Positives = 64/198 (32%), Gaps = 73/198 (36%)
Query: 10 GLNTVEILAKIKCC-------VPGC-------HRFLPRAYCPDFH--VLCGNHQAIEECP 53
GLN L K K +P +RFLP A P FH +L I +
Sbjct: 388 GLNLT--LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-SP-FHSHLLVPASDLINK-D 442
Query: 54 ICTGGVSWLSPLELGLVKFFLLELRD-RKFKFE--------IFRLFSLDFDTFLSYKMMG 104
+ VS+ + ++ + + + D R I RL + ++T +K
Sbjct: 443 LVKNNVSF-NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFK--- 497
Query: 105 FISTYIVILIQESYNDFGRLSTSTIVQKALQSEINAFLASKGYSGPTAR-KTGTTIVGAI 163
+T+I+ DFG S G T R K GT G
Sbjct: 498 --ATHIL--------DFGPGGAS------------------GLGVLTHRNKDGT---GV- 525
Query: 164 FADGVVLGA--DTRATDD 179
V++ D DD
Sbjct: 526 ---RVIVAGTLDINPDDD 540
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.061
Identities = 29/166 (17%), Positives = 47/166 (28%), Gaps = 82/166 (49%)
Query: 28 HRFL------PRAYCPD------------FHVLCGNHQAIEECPICTGGVSWLSPLELGL 69
HR + P+ + D H+ G+H L +E
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHH---------------LKNIEHPE 488
Query: 70 VKFFLLELRDRKFKFEIFRLFSLDFDTFLSYKM---------MGFISTYIVIL------I 114
+ +FR+ LDF FL K+ G I + L I
Sbjct: 489 -------------RMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 115 QESYNDFGRL-----------------STST-IVQKALQSEINAFL 142
++ + RL S T +++ AL +E A
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 31.0 bits (69), Expect = 1.3
Identities = 43/305 (14%), Positives = 78/305 (25%), Gaps = 95/305 (31%)
Query: 248 DTIVAEKNCQKIHYMAKNIYCCGAGTAADTQVTTDLIASQLELLKLNTGKIPRVITANRL 307
D V +C+ + M K+I + + ++ ++
Sbjct: 27 DAFVDNFDCKDVQDMPKSIL-----SKEEID----------HIIMS-----KDAVSGTLR 66
Query: 308 LRQMLFRYQEEECKKLVRDAIA------AGVFNDLGSGSNIDLCGHVSAALVLGGVDDTG 361
L L QEE +K V + + ++ ++ L +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 362 A---------------HLFNIYP------HGSSDTVPFCTM-GSG--SLAAMSV------ 391
A L + P G + GSG +A
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------VLGSGKTWVALDVCLSYKVQ 177
Query: 392 --FESN--W-------KPNMTEEECKKLVRDAIAAGVFNDLGSGSNIDLCVIKKNGVEYL 440
+ W P E +KL+ S + + + L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 441 ---RPYEIA-----NVKGKKDGDY-----------RFKRGTTALLSTQRIPIVVESEQVI 481
+PYE NV+ K + RFK+ T L + I ++ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 482 HTGTE 486
T E
Sbjct: 298 LTPDE 302
Score = 30.6 bits (68), Expect = 1.6
Identities = 20/111 (18%), Positives = 27/111 (24%), Gaps = 42/111 (37%)
Query: 1 MSNPSNPFAGLNTVEILAKIKCCVPGCHRFLPRAYC---P-----------DF------- 39
+ + S +L K C P LPR P D
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 40 -HVLCGN-HQAIEECPICTGGVSWLSPLELGLVKFFLLELRDRKFKFEIFR 88
HV C IE ++ L P E R + +F
Sbjct: 348 KHVNCDKLTTIIESS------LNVLEPAEY----------RKMFDRLSVFP 382
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein,
metal-binding, oxygen binding; 4.00A {Megathura
crenulata} PDB: 3qjo_A
Length = 491
Score = 31.7 bits (71), Expect = 0.58
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 418 FNDLGSGSNIDLCVIKKNGVEYLRPYEIANVKGKKDGDYRFKRGTTALLSTQ--RIPIVV 475
+LGS + + C + +E+ + + GDY TT L + RI + V
Sbjct: 434 MLNLGSYTAMFKCKVPPFS---FHAFELGKMYSVESGDYFMTASTTELCNDNNLRIHVHV 490
Query: 476 E 476
+
Sbjct: 491 D 491
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 30.6 bits (70), Expect = 0.84
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 107 STYIVILIQESYNDFGRLSTSTIVQKALQSEINAFLASKGYSGPTARKTGTTIVGAIFAD 166
S ++ + +D + A++ N+ +A++ P GTT+ +FA
Sbjct: 47 SQLVIAALAHLDDDEPGGDLLAKLDAAVR-AGNSAIAAQVEMEPDLEGMGTTLTAILFAG 105
Query: 167 GVVLGA---DTRA------------TDDTIVAE 184
+ D+R DDT V
Sbjct: 106 NRLGLVHIGDSRGYLLRDGELTQITKDDTFVQT 138
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 30.6 bits (69), Expect = 1.1
Identities = 17/114 (14%), Positives = 28/114 (24%), Gaps = 16/114 (14%)
Query: 53 PICTGGVSWLSPLELGLVKFFLLELRDRKFKFEIFRLFSLDFDTFLSYK-MMGFISTYIV 111
P G+ W E L F L + +++ F + +G V
Sbjct: 208 PTLDLGLPWFLQ-EPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAEKLGVPKDEAV 266
Query: 112 ILIQESYNDFGRLSTSTI--------------VQKALQSEINAFLASKGYSGPT 151
I + + + L EI + S G T
Sbjct: 267 HNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVT 320
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH)
domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Length = 120
Score = 29.0 bits (65), Expect = 1.3
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 131 QKALQSEINAFLASKGYSGPTARKTGTTIVGAIFAD 166
+ ++ FL GY+ + K+ F
Sbjct: 16 IQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLK 51
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 29.8 bits (66), Expect = 2.0
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 131 QKALQSEINAFLASKGYSGPTARKTGTTIVGAIFAD 166
+ ++ FL GY+ + K+ F
Sbjct: 14 IQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLK 49
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A
{Homo sapiens} PDB: 3bd0_A
Length = 293
Score = 29.2 bits (65), Expect = 3.1
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 8/120 (6%)
Query: 37 PDFHVLCGNHQAIEECPICTGGVSWLSPLELGLVKFFLLELRDRKFKFEIFRLFSLDFD- 95
+L +H + + +PL + + + FE L + + +
Sbjct: 68 RRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEH 127
Query: 96 ------TFLSYKMMGFISTYIVILIQESYNDFGRLST-STIVQKALQSEINAFLASKGYS 148
+ + M + +I + + + K L N F+ S +
Sbjct: 128 SIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFC 187
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.1 bits (62), Expect = 3.9
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 19 KIKCCVPGCHRFLPRAYCPDFHVLCGNHQAIEECPIC 55
+KC GC + + D C A+ +CP C
Sbjct: 82 MVKCPNEGCLHKMELRHLEDHQAHC--EFALMDCPQC 116
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc,
PSI-biology, structural genomics; 1.96A {Sinorhizobium
meliloti}
Length = 298
Score = 27.9 bits (63), Expect = 7.6
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 16/64 (25%)
Query: 273 TAADTQVTTDLIASQLELLKLNTG-KIPRVITANRLLRQML----FRYQEEECKKLVRDA 327
++ T +L + + G IP L FR E +++ A
Sbjct: 8 SSGVDLGTENLYFQSMMHAVSSNGANIP-----------ALGFGTFRMSGAEVLRILPQA 56
Query: 328 IAAG 331
+ G
Sbjct: 57 LKLG 60
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 27.4 bits (62), Expect = 7.8
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 398 PNMTEEECKKLVRDAIAAGVFND 420
N+T+E+ + ++++ +AGV
Sbjct: 5 DNVTQEDIQAMLQEGSSAGVIEH 27
>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding
protein 5*, beta-lactamase, structural GE PSI-2, protein
structure initiative; HET: CIT; 1.75A {Bacillus
subtilis}
Length = 334
Score = 27.6 bits (62), Expect = 10.0
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 12/52 (23%)
Query: 207 KNAFLASKGYSGPTARKTGTT------IVGAIFADG-----VVLGADTRATD 247
KN L Y T KTG T +V DG V + D
Sbjct: 181 KNKLLTML-YPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDD 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,581,468
Number of extensions: 476633
Number of successful extensions: 1379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 153
Length of query: 486
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 389
Effective length of database: 3,993,456
Effective search space: 1553454384
Effective search space used: 1553454384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)