BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10992
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U (Iscu)
Length = 130
Score = 217 bits (552), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/116 (87%), Positives = 111/116 (95%)
Query: 59 ENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSS 118
ENPRNVGSLDK KNVGTGLVGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSS
Sbjct: 8 ENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSS 67
Query: 119 LATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNS 174
LATEWVKGKTV+EAL +KNTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S
Sbjct: 68 LATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQES 123
>pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron-
Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound
At The Active Site. Northeast Structural Genomics
Consortium Target Ir24. This Protein Is Not Apo, It Is A
Model Without Zinc Binding Constraints.
pdb|1R9P|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron-
Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound
At The Active Site. Northeast Structural Genomics
Consortium Target Ir24
Length = 134
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 113/125 (90%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGSLDKKD NVGTG+VGAPACGDVM+LQIKVDDNG I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK+++EA +KN+ IA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIAD 120
Query: 168 YRIKQ 172
Y+ KQ
Sbjct: 121 YKAKQ 125
>pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt)
Length = 128
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 112/127 (88%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGS D D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK++DEA +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
Y+ K+ +
Sbjct: 121 YKSKREA 127
>pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex
Length = 129
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 111/125 (88%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y E VIDHYENPRNVGS D D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT+G
Sbjct: 4 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 63
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
CGSAIASSSL TEWVKGK++DEA +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++DY+
Sbjct: 64 CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYK 123
Query: 170 IKQNS 174
K+ +
Sbjct: 124 SKREA 128
>pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a)
Length = 128
Score = 201 bits (512), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 111/127 (87%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGS D D+NVG+G+VGAPACG VMKLQIKV+D G I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGAVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK++DEA +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
Y+ K+ +
Sbjct: 121 YKSKREA 127
>pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|D Chain D, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
Length = 153
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 85/120 (70%), Gaps = 5/120 (4%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y + V DH++NPRNVG ++ D G G VG P CGD+M + IKV DN +I D KF+TFG
Sbjct: 2 YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVKDN-RIEDIKFQTFG 57
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDY 168
C +AIA+SS+ATE KGKT++EALK+ +A+ L LP K+HCS LA DA++ A+ DY
Sbjct: 58 CAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDY 117
>pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|B Chain B, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|C Chain C, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
Length = 157
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 84/133 (63%), Gaps = 5/133 (3%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFK 106
Y+E V+DH+ NPRNVG L+ D N G G G PACG M IKV+ +N I D +FK
Sbjct: 3 FEYNEKVLDHFLNPRNVGVLE--DAN-GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFK 59
Query: 107 TFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAAL 165
TFGCGSAIA SS+ TE VKGK + AL L DI +EL LPP K+HC+ L + + A+
Sbjct: 60 TFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAI 119
Query: 166 SDYRIKQNSAKAA 178
DY +KQ + A
Sbjct: 120 KDYLMKQGRVEEA 132
>pdb|2QQ4|A Chain A, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|B Chain B, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|C Chain C, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|D Chain D, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|E Chain E, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|F Chain F, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|G Chain G, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|H Chain H, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|I Chain I, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|J Chain J, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
Length = 138
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y E ++DHY++PRN G L + K G G+ P+CGD +++ + ++ + I D +F+ G
Sbjct: 8 YREILLDHYQSPRNFGVLPQATKQAG-GM--NPSCGDQVEVMVLLEGD-TIADIRFQGQG 63
Query: 110 CGSAIASSSLATEWVKGKTVDEALKL 135
C + AS+SL TE VKGK V EAL+L
Sbjct: 64 CAISTASASLMTEAVKGKKVAEALEL 89
>pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Iscu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
pdb|2AZH|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Sufu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
Length = 147
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 50 YHENVIDHYENPRNVGSLDKK---DKNVGTGLVGAPACGDVMKLQIKVDDNGKII-DAKF 105
Y + ++DHY+NPRN G L+ D N P CGD ++L +K+D G I+ DAKF
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSIVVDMN-------NPTCGDRIRLTMKLD--GDIVEDAKF 61
Query: 106 KTFGCGSAIASSSLATEWVKGKTVDEALKL 135
+ GC ++AS+S+ T+ +KGK ++ AL +
Sbjct: 62 EGEGCSISMASASMMTQAIKGKDIETALSM 91
>pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A
Resolution
Length = 159
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 28/137 (20%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y V DH + P + G LD V + P CGDV+ L +K D++ KI D F G
Sbjct: 10 YMAVVADHSKRPHHHGQLD----GVEAVQLNNPTCGDVISLTVKFDED-KIEDIAFAGNG 64
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLP---------------------P 148
C + ASSS+ T+ V GK+ +EAL L DI E+ P
Sbjct: 65 CTISTASSSMMTDAVIGKSKEEALAL--ADIFSEMVQGQENPAQKELGEAELLAGVAKFP 122
Query: 149 VKLHCSMLAEDAIKAAL 165
++ CS LA +A+K A+
Sbjct: 123 QRIKCSTLAWNALKEAI 139
>pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex With Tnp-Atp
Length = 191
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIID 102
P+LH N IDH P+ + K +GT ++ A G+ + I+V+D+G+ ID
Sbjct: 53 PLLHLLRNAIDHGIEPKE-ERIAKGKPPIGTLILSARHEGN--NVVIEVEDDGRGID 106
>pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I58|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I59|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I59|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I5A|A Chain A, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5A|B Chain B, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5B|A Chain A, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5B|B Chain B, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5C|A Chain A, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5C|B Chain B, Structure Of Chea Domain P4 In Complex With Adp
Length = 189
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIID 102
P+LH N IDH P+ + K +GT ++ A G+ + I+V+D+G+ ID
Sbjct: 51 PLLHLLRNAIDHGIEPKE-ERIAKGKPPIGTLILSARHEGN--NVVIEVEDDGRGID 104
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 93 KVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAK 142
+ D +G +I+ K G G + L E+ T+DE L+L T + K
Sbjct: 154 ETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTK 203
>pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIID 102
P+LH N IDH P+ + K +GT ++ A G+ + I+V+D+G+ ID
Sbjct: 110 PLLHLLRNAIDHGIEPKE-ERIAKGKPPIGTLILSARHEGN--NVVIEVEDDGRGID 163
>pdb|2CH4|A Chain A, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
pdb|2CH4|B Chain B, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
pdb|3UR1|A Chain A, The Structure Of A Ternary Complex Between Chea Domains P4
And P5 With Chew And With A Truncated Fragment Of Tm14,
A Chemoreceptor Analog From Thermotoga Maritima
Length = 320
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIID 102
P+LH N IDH P+ + K +GT ++ A G+ + I+V+D+G+ ID
Sbjct: 51 PLLHLLRNAIDHGIEPKE-ERIAKGKPPIGTLILSARHEGN--NVVIEVEDDGRGID 104
>pdb|1W5C|T Chain T, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|V Chain V, Photosystem Ii From Thermosynechococcus Elongatus
pdb|4IXQ|V Chain V, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|VV Chain v, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|V Chain V, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|VV Chain v, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 163
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 15 FKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENP 61
F+++C+ GG +TN + L +TP E ++D+ +NP
Sbjct: 59 FQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNP 105
>pdb|1IZL|V Chain V, Crystal Structure Of Photosystem Ii
pdb|1IZL|0 Chain 0, Crystal Structure Of Photosystem Ii
pdb|1MZ4|A Chain A, Crystal Structure Of Cytochrome C550 From
Thermosynechococcus Elongatus
pdb|1S5L|V Chain V, Architecture Of The Photosynthetic Oxygen Evolving
Center
pdb|1S5L|VV Chain v, Architecture Of The Photosynthetic Oxygen Evolving
Center
pdb|2AXT|V Chain V, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|VV Chain v, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii (Part
1 Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii (Part
2 Of 2). This File Contains Second Monomer Of Psii
Dimer
pdb|3A0B|V Chain V, Crystal Structure Of Br-Substituted Photosystem Ii
Complex
pdb|3A0B|VV Chain v, Crystal Structure Of Br-Substituted Photosystem Ii
Complex
pdb|3A0H|V Chain V, Crystal Structure Of I-Substituted Photosystem Ii
Complex
pdb|3A0H|VV Chain v, Crystal Structure Of I-Substituted Photosystem Ii
Complex
pdb|3KZI|V Chain V, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File
Contains First Monomer Of Psii Dimer
pdb|3PRR|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File
Contains Second Monomer Of Psii Dimer
pdb|3ARC|V Chain V, Crystal Structure Of Oxygen-Evolving Photosystem Ii At
1.9 Angstrom Resolution
pdb|3ARC|VV Chain v, Crystal Structure Of Oxygen-Evolving Photosystem Ii At
1.9 Angstrom Resolution
pdb|4FBY|V Chain V, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|II Chain i, Fs X-Ray Diffraction Of Photosystem Ii
Length = 137
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 15 FKFSCSLHSSGGTCRTNNATTLLKSPKWASTPVLHYHENVIDHYENP 61
F+++C+ GG +TN + L +TP E ++D+ +NP
Sbjct: 33 FQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNP 79
>pdb|3F0D|A Chain A, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|B Chain B, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|C Chain C, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|D Chain D, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|E Chain E, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|F Chain F, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0E|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0F|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0G|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|D Chain D, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|E Chain E, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|F Chain F, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3IEQ|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEW|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3JVH|A Chain A, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|B Chain B, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|C Chain C, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3K14|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K2X|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3KE1|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3MBM|A Chain A, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|B Chain B, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|C Chain C, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3P0Z|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P10|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3Q8H|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3QHD|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
Length = 183
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 78 LVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK- 136
L GA A GD+ + D K D++ C S +A + A V + +A KL
Sbjct: 71 LFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAP 130
Query: 137 -----NTDIAKELCLP 147
+IA +L LP
Sbjct: 131 HIDAMRANIAADLDLP 146
>pdb|3IKE|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKF|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
Length = 166
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 78 LVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK- 136
L GA A GD+ + D K D++ C S +A + A V + +A KL
Sbjct: 54 LFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAP 113
Query: 137 -----NTDIAKELCLP 147
+IA +L LP
Sbjct: 114 HIDAMRANIAADLDLP 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,338,883
Number of Sequences: 62578
Number of extensions: 219600
Number of successful extensions: 523
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 19
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)