BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10992
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D7P6|ISCU_MOUSE Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus
musculus GN=Iscu PE=1 SV=1
Length = 168
Score = 246 bits (628), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 117/158 (74%), Positives = 132/158 (83%), Gaps = 4/158 (2%)
Query: 23 SSGGTCRTNNATTLLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGL 78
+ G R + LL+SP+ S P YH+ V+DHYENPRNVGSLDK KNVGTGL
Sbjct: 5 TGAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGL 64
Query: 79 VGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
VGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +KNT
Sbjct: 65 VGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124
Query: 139 DIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
DIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S K
Sbjct: 125 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKK 162
>sp|Q9H1K1|ISCU_HUMAN Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo
sapiens GN=ISCU PE=1 SV=2
Length = 167
Score = 243 bits (619), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 117/160 (73%), Positives = 133/160 (83%), Gaps = 6/160 (3%)
Query: 23 SSGGTCRTNNATT--LLKSPKWA----STPVLHYHENVIDHYENPRNVGSLDKKDKNVGT 76
++ G R A + LL+SP+ S P YH+ V+DHYENPRNVGSLDK KNVGT
Sbjct: 2 AAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGT 61
Query: 77 GLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 136
GLVGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIASSSLATEWVKGKTV+EAL +K
Sbjct: 62 GLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIK 121
Query: 137 NTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
NTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ K
Sbjct: 122 NTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKK 161
>sp|O49627|ISU1_ARATH Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana
GN=ISU1 PE=2 SV=1
Length = 167
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/148 (71%), Positives = 122/148 (82%), Gaps = 4/148 (2%)
Query: 35 TLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKV 94
T +S W+ + YHENVIDHY+NPRNVGS DK D NVGTGLVGAPACGDVMKLQIKV
Sbjct: 14 TSRQSTPWSVGILRTYHENVIDHYDNPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIKV 73
Query: 95 DD-NGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHC 153
D+ G+I+DA+FKTFGCGSAIASSS+ATEWVKGK +++ L +KNT+IAK L LPPVKLHC
Sbjct: 74 DEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHC 133
Query: 154 SMLAEDAIKAALSDY---RIKQNSAKAA 178
SMLAEDAIKAA+ DY R+K N A AA
Sbjct: 134 SMLAEDAIKAAVKDYKEKRVKTNGAAAA 161
>sp|O81433|ISU3_ARATH Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana
GN=ISU3 PE=2 SV=1
Length = 171
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 111/126 (88%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
YH NVIDHY+NPRNVGS DK D NVGTGLVGAP CGDVMKLQ+K D +G+IIDAKFKTFG
Sbjct: 28 YHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAPQCGDVMKLQVKFDGSGQIIDAKFKTFG 87
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
CGSAIA+SS+ATEWVKGK+V+E L +KN+ IAK L LPPVKLHCSMLAEDAIKAA+ +Y+
Sbjct: 88 CGSAIAASSVATEWVKGKSVEEVLTIKNSQIAKHLSLPPVKLHCSMLAEDAIKAAIKNYK 147
Query: 170 IKQNSA 175
KQ+ A
Sbjct: 148 EKQDKA 153
>sp|Q57074|NIFU_HAEIN NifU-like protein OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=nifU PE=1 SV=2
Length = 126
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 113/125 (90%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGSLDKKD NVGTG+VGAPACGDVM+LQIKVDDNG I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK+++EA +KN+ IA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIAD 120
Query: 168 YRIKQ 172
Y+ KQ
Sbjct: 121 YKAKQ 125
>sp|Q9ZD61|NIFU_RICPR NifU-like protein OS=Rickettsia prowazekii (strain Madrid E)
GN=nifU PE=3 SV=1
Length = 131
Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/129 (75%), Positives = 115/129 (89%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y + VIDHYENPRNVGSLDKK KNVGTGLVGAPACGDVMKLQI+V D+ I DAKFKT
Sbjct: 1 MAYSKKVIDHYENPRNVGSLDKKKKNVGTGLVGAPACGDVMKLQIEVGDDEIITDAKFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
FGCGSAIASSSL TEW+KGK+V++A ++KNT+IAKEL LPPVKLHCS+LAEDAIKAA++D
Sbjct: 61 FGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIAD 120
Query: 168 YRIKQNSAK 176
Y+ K+ + K
Sbjct: 121 YKQKRENKK 129
>sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=ISU1 PE=3 SV=1
Length = 181
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 105/162 (64%), Positives = 123/162 (75%), Gaps = 7/162 (4%)
Query: 17 FSCSLHSSGGTCRTNNATTLLKSPKWASTPVL----HYHENVIDHYENPRNVGSLDKKDK 72
F+ S+G R TT + SP TP+ YHE V+DHY NPRNVGS++K D+
Sbjct: 3 FNRITRSAGLLARARPTTTAVMSPM---TPLAISRRGYHEKVLDHYNNPRNVGSMNKNDE 59
Query: 73 NVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEA 132
+VGTGLVGAPACGDVMKLQI+VDDNG I D KFKTFGCGSAIASSS TE V+GK++ EA
Sbjct: 60 DVGTGLVGAPACGDVMKLQIRVDDNGVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEA 119
Query: 133 LKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNS 174
K+KNT IAKEL LPPVKLHCSMLAEDAIK+A+SDY K+ +
Sbjct: 120 GKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSKRKT 161
>sp|P0ACD7|NIFU_SHIFL NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1
Length = 128
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 112/127 (88%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGS D D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK++DEA +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
Y+ K+ +
Sbjct: 121 YKSKREA 127
>sp|P0ACD4|NIFU_ECOLI NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1
SV=1
Length = 128
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 112/127 (88%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGS D D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK++DEA +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
Y+ K+ +
Sbjct: 121 YKSKREA 127
>sp|P0ACD5|NIFU_ECOL6 NifU-like protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nifU PE=3 SV=1
Length = 128
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 112/127 (88%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGS D D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK++DEA +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
Y+ K+ +
Sbjct: 121 YKSKREA 127
>sp|P0ACD6|NIFU_ECO57 NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=1 SV=1
Length = 128
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 112/127 (88%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y E VIDHYENPRNVGS D D+NVG+G+VGAPACGDVMKLQIKV+D G I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK++DEA +KNTDIA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 120
Query: 168 YRIKQNS 174
Y+ K+ +
Sbjct: 121 YKSKREA 127
>sp|Q6BGU0|ISU1_DEBHA Iron sulfur cluster assembly protein 1, mitochondrial
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=ISU1 PE=3 SV=1
Length = 179
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDN-GKIIDAKFKTF 108
YHE V+DHY NPRNVG+L+K D +VGTGLVGAPACGDVM+LQI+VDD G I D KFKTF
Sbjct: 37 YHEKVLDHYSNPRNVGTLNKLDVDVGTGLVGAPACGDVMRLQIQVDDETGVIKDVKFKTF 96
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY 168
GCGSAIASSS TE VKGKT++EA+K+KNT IAKEL LPPVKLHCSMLAEDAIK+A+ DY
Sbjct: 97 GCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDY 156
Query: 169 RIKQN 173
R K++
Sbjct: 157 RSKRS 161
>sp|Q6CRQ9|ISU1_KLULA Iron sulfur cluster assembly protein 1, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ISU1 PE=3
SV=1
Length = 180
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 115/145 (79%), Gaps = 3/145 (2%)
Query: 33 ATTLLKSPKWASTPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQI 92
A T+ SP AS YH VIDHY NPRNVGSLDK NVGTGLVGAPACGDVMKLQI
Sbjct: 36 APTVGSSPSMASA--RFYHPKVIDHYTNPRNVGSLDKNLPNVGTGLVGAPACGDVMKLQI 93
Query: 93 KV-DDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKL 151
+V D+ G I + KFKTFGCGSAIASSS TE V+GKT+++A K+KNT+IA+EL LPPVKL
Sbjct: 94 QVNDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKL 153
Query: 152 HCSMLAEDAIKAALSDYRIKQNSAK 176
HCSMLAEDAIKAA+ DY+ K+ + +
Sbjct: 154 HCSMLAEDAIKAAIKDYQAKRPTTQ 178
>sp|Q03020|ISU1_YEAST Iron sulfur cluster assembly protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ISU1 PE=1 SV=1
Length = 165
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/126 (75%), Positives = 109/126 (86%), Gaps = 1/126 (0%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDN-GKIIDAKFKTF 108
YH VI+HY +PRNVGSLDKK NVGTGLVGAPACGDVM+LQIKV+D+ G I D KFKTF
Sbjct: 35 YHPKVIEHYTHPRNVGSLDKKLPNVGTGLVGAPACGDVMRLQIKVNDSTGVIEDVKFKTF 94
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY 168
GCGSAIASSS TE V+G T+D+A K+KNT+IAKEL LPPVKLHCSMLAEDAIKAA+ DY
Sbjct: 95 GCGSAIASSSYMTELVQGMTLDDAAKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDY 154
Query: 169 RIKQNS 174
+ K+N+
Sbjct: 155 KSKRNT 160
>sp|B0YLW7|ISU1_TRAHO Iron sulfur cluster assembly protein 1 OS=Trachipleistophora
hominis GN=ISU1 PE=3 SV=1
Length = 138
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 109/123 (88%), Gaps = 1/123 (0%)
Query: 49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTF 108
+YH +VIDH+ENPRNVGS DK +VGTGLVGAPACGDVMKLQIKV+ N I DAKF+TF
Sbjct: 14 NYHSSVIDHFENPRNVGSYDKSANDVGTGLVGAPACGDVMKLQIKVE-NDIIKDAKFRTF 72
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY 168
GCGSAIASSSLATEW+KGK++ ++LK+ N DIAK+L LPPVKLHCSMLAEDAIKAA+SDY
Sbjct: 73 GCGSAIASSSLATEWIKGKSISDSLKITNKDIAKKLSLPPVKLHCSMLAEDAIKAAISDY 132
Query: 169 RIK 171
+ K
Sbjct: 133 QKK 135
>sp|Q9MAB6|ISU2_ARATH Iron-sulfur cluster assembly protein 2 OS=Arabidopsis thaliana
GN=ISU2 PE=2 SV=1
Length = 163
Score = 196 bits (498), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 113/129 (87%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
YHENVIDH+ENPRNVGS ++ D NVGTGLVGAPACGD+M LQIKVDD+G+IID +FKTFG
Sbjct: 27 YHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACGDLMSLQIKVDDSGQIIDTRFKTFG 86
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
CGSAIASSS+A+EW+KGKT+DE + +KN +IAK L LPPVKLHCSMLAEDAIK+A+ DY+
Sbjct: 87 CGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVRDYK 146
Query: 170 IKQNSAKAA 178
KQ AA
Sbjct: 147 EKQAKTNAA 155
>sp|Q75C07|ISU1_ASHGO Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=ISU1 PE=3 SV=1
Length = 154
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDN-GKIIDAKFKTF 108
YH VIDHY NPRNVG+LDKK NVGTGLVGAPACGDVM+LQI+VDD+ G I + KFKTF
Sbjct: 25 YHPKVIDHYTNPRNVGTLDKKLTNVGTGLVGAPACGDVMRLQIQVDDSTGVIENVKFKTF 84
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY 168
GCGSAIASSS TE V+GKT+ +A K+KNT+IA+EL LPPVKLHCSMLAEDAIKAA+ DY
Sbjct: 85 GCGSAIASSSYMTELVRGKTLADAEKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDY 144
Query: 169 RIKQNSAK 176
R K+ + +
Sbjct: 145 RSKRKATE 152
>sp|Q12056|ISU2_YEAST Iron sulfur cluster assembly protein 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ISU2 PE=1 SV=1
Length = 156
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 108/127 (85%), Gaps = 1/127 (0%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIID-AKFKTF 108
YH VIDHY NPRNVGS+DK NVGTG+VGAPACGDV+KLQI+V+D II+ KFKTF
Sbjct: 27 YHPKVIDHYTNPRNVGSMDKSLANVGTGIVGAPACGDVIKLQIQVNDKSGIIENVKFKTF 86
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY 168
GCGSAIASSS TE V+G ++DEA+K+KNT+IAKEL LPPVKLHCSMLAEDAIKAA+ DY
Sbjct: 87 GCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDY 146
Query: 169 RIKQNSA 175
+ K+N +
Sbjct: 147 KTKRNPS 153
>sp|Q9UTC6|ISU1_SCHPO Iron sulfur cluster assembly protein 1, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=isu1 PE=1 SV=1
Length = 192
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 103/123 (83%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
YH+NV+DHY NPRNVG+L K D +VG GLVGAPACGDVM+L I+V+ +G I D KFKTFG
Sbjct: 54 YHKNVLDHYNNPRNVGTLPKGDPDVGIGLVGAPACGDVMRLAIRVNKDGVIEDVKFKTFG 113
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
CGSAIASSS T VKG T++EA K+KNT IAKELCLPPVKLHCSMLAEDAIK+A+ YR
Sbjct: 114 CGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYR 173
Query: 170 IKQ 172
KQ
Sbjct: 174 SKQ 176
>sp|Q8SSM2|ISU1_ENCCU Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ISU1 PE=3 SV=1
Length = 140
Score = 193 bits (491), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 103/119 (86%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y +V+DH+ENPRNVGSLDK D VGTG+VGAPACGDVMKLQIKV + I DAKFKTFG
Sbjct: 14 YDSSVVDHFENPRNVGSLDKTDPRVGTGMVGAPACGDVMKLQIKVGKDNVIEDAKFKTFG 73
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY 168
CGSAIASSSLATEW+K KT+DE+LK+ N DIAK+L LPP+KLHCSMLAEDAIK A+ D+
Sbjct: 74 CGSAIASSSLATEWIKKKTIDESLKISNRDIAKKLSLPPIKLHCSMLAEDAIKMAIKDF 132
>sp|O51885|NIFU_BUCAP NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nifU PE=3 SV=1
Length = 128
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 106/126 (84%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y + V+DHYENPRNVGS D NVG+GLVGAPACGDVMKLQIKV++ G I DA FKT
Sbjct: 1 MAYSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEW+KGK++ EA +KNT I +EL LPPVK+HCS+LAEDAIKAA+SD
Sbjct: 61 YGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISD 120
Query: 168 YRIKQN 173
Y+ K+N
Sbjct: 121 YKSKKN 126
>sp|P57658|NIFU_BUCAI NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nifU PE=3 SV=1
Length = 127
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 106/125 (84%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y + V+DHYENPRNVGS D NVG+GLVGAPACGDVMKLQIKV++ G I DA FKT
Sbjct: 1 MAYSKKVMDHYENPRNVGSFSSTDLNVGSGLVGAPACGDVMKLQIKVNEKGIIEDACFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEWVKGK+++EA +KNT I +EL LPPVK+HCS+LAEDAIKAA+SD
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISD 120
Query: 168 YRIKQ 172
Y+ K+
Sbjct: 121 YKRKK 125
>sp|Q6FJY3|ISU1_CANGA Iron sulfur cluster assembly protein 1, mitochondrial OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=ISU1 PE=3 SV=1
Length = 213
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 104/126 (82%), Gaps = 1/126 (0%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDD-NGKIIDAKFKTF 108
YH VI+HY +PRNVGS+DK NVGTGLVGAPACGDVM+LQIKV+D G I D KFKTF
Sbjct: 83 YHPKVIEHYTHPRNVGSMDKTLPNVGTGLVGAPACGDVMRLQIKVNDKTGVIEDVKFKTF 142
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDY 168
GCGSAIASSS TE V G T+D+A K+KNT IAKEL LPPVKLHCSMLAEDAIKAA+ DY
Sbjct: 143 GCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDY 202
Query: 169 RIKQNS 174
+ K+ S
Sbjct: 203 KSKRTS 208
>sp|Q89A18|NIFU_BUCBP NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nifU PE=3 SV=1
Length = 126
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 106/125 (84%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKT 107
+ Y + VIDHYENPRNVGS D NVG+GLVGAPACGDVMKLQIKV+ NG I DA FKT
Sbjct: 1 MAYSKKVIDHYENPRNVGSFKTIDANVGSGLVGAPACGDVMKLQIKVNKNGIIQDACFKT 60
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSD 167
+GCGSAIASSSL TEW+KGK++ EA +KNT+IA+EL LPPVK+HCS+LAEDAIKAA++D
Sbjct: 61 YGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITD 120
Query: 168 YRIKQ 172
Y+ K
Sbjct: 121 YKNKN 125
>sp|O67045|NIFU_AQUAE NifU-like protein OS=Aquifex aeolicus (strain VF5) GN=nifU PE=1
SV=1
Length = 157
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 85/133 (63%), Gaps = 5/133 (3%)
Query: 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFK 106
Y+E V+DH+ NPRNVG L+ D N G G G PACGD M IKV+ +N I D +FK
Sbjct: 3 FEYNEKVLDHFLNPRNVGVLE--DAN-GVGQCGNPACGDAMLFTIKVNPENDVIEDVRFK 59
Query: 107 TFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAAL 165
TFGCGSAIA SS+ TE VKGK + AL L DI +EL LPP K+HC+ L + + A+
Sbjct: 60 TFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAI 119
Query: 166 SDYRIKQNSAKAA 178
DY +KQ + A
Sbjct: 120 KDYLMKQGRVEEA 132
>sp|P05340|NIFU_AZOVI Nitrogen fixation protein NifU OS=Azotobacter vinelandii GN=nifU
PE=3 SV=2
Length = 312
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 88/122 (72%), Gaps = 5/122 (4%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKTF 108
Y E V +H+ NP+N G+++ + G VG+ +CGD ++L +KVD + I+DA F+TF
Sbjct: 4 YSEKVKEHFYNPKNAGAVEGAN---AIGDVGSLSCGDALRLTLKVDPETDVILDAGFQTF 60
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSD 167
GCGSAIASSS TE VKG T+DEALK+ N DIA L LPP K+HCS++ +A++AA+++
Sbjct: 61 GCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVAN 120
Query: 168 YR 169
YR
Sbjct: 121 YR 122
>sp|P20628|NIFU_NOSS1 Nitrogen fixation protein NifU OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=nifU PE=3 SV=1
Length = 300
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 91/125 (72%), Gaps = 5/125 (4%)
Query: 50 YHENVIDHYENPRNVGSLDKKDK---NVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKF 105
Y + V++ + +P+N G +++ + V TG VG+ ACGD ++L IKV+ ++ KI+D++F
Sbjct: 4 YTDKVLELFYDPKNQGVIEENGEPGVKVATGEVGSIACGDALRLHIKVEVESDKIVDSRF 63
Query: 106 KTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAA 164
+TFGC SAIASSS TE +KG T+DEALK+ N DIA L LP K+HCS++ ++A++AA
Sbjct: 64 QTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAA 123
Query: 165 LSDYR 169
+ +YR
Sbjct: 124 IYNYR 128
>sp|Q43885|NIFU_TRIAZ Nitrogen fixation protein NifU OS=Trichormus azollae GN=nifU PE=3
SV=1
Length = 300
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 90/125 (72%), Gaps = 5/125 (4%)
Query: 50 YHENVIDHYENPRNVGSLDKKDK---NVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKF 105
Y + V++ + +P+N G ++ + V TG VG+ ACGD ++L IKV+ ++ KI+D++F
Sbjct: 4 YTDKVLELFYDPKNQGVIEDNGEPGVKVATGEVGSIACGDALRLHIKVEVESDKIVDSRF 63
Query: 106 KTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAA 164
+TFGC SAIASSS TE +KG T+DEALK+ N DIA L LP K+HCS++ ++A++AA
Sbjct: 64 QTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAA 123
Query: 165 LSDYR 169
+ +YR
Sbjct: 124 IYNYR 128
>sp|P23121|NIFU_AZOCH Nitrogen fixation protein NifU OS=Azotobacter chroococcum mcd 1
GN=nifU PE=3 SV=1
Length = 309
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 85/122 (69%), Gaps = 5/122 (4%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKTF 108
Y E V +H+ NP+N G+++ + G VG+ +CGD ++L +KVD + I+DA F+TF
Sbjct: 4 YSEKVKEHFYNPKNAGAVEGAN---AIGDVGSLSCGDRLRLTLKVDPETDVILDAGFQTF 60
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELC-LPPVKLHCSMLAEDAIKAALSD 167
GCGSAIASSS TE VKG +D+ALK+ N DIA L LP K+HCS++ + ++AA+++
Sbjct: 61 GCGSAIASSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVAN 120
Query: 168 YR 169
YR
Sbjct: 121 YR 122
>sp|P05343|NIFU_KLEPN Nitrogen fixation protein NifU OS=Klebsiella pneumoniae GN=nifU
PE=3 SV=2
Length = 274
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 84/123 (68%), Gaps = 5/123 (4%)
Query: 49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIID-AKFKT 107
+Y E V DH+ NPRN +D + G VG+ +CGD ++L ++VD +II+ A F+T
Sbjct: 3 NYSEKVKDHFFNPRNARVVDNAN---AVGDVGSLSCGDALRLMLRVDPQSEIIEEAGFQT 59
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALS 166
FGCGSAIASSS TE + G T+ EA ++ N IA L LPP K+HCS++ ++A++AA++
Sbjct: 60 FGCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIA 119
Query: 167 DYR 169
++R
Sbjct: 120 NFR 122
>sp|Q43909|NIFU_AZOBR Nitrogen fixation protein NifU OS=Azospirillum brasilense GN=nifU
PE=3 SV=2
Length = 310
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 7/125 (5%)
Query: 49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKT 107
+Y + V +H+ NP+N G+LD+ D G VG+ CGD +KL +KV+ D DA F+T
Sbjct: 3 NYTDKVKEHFFNPKNAGALDEADD---VGEVGSITCGDALKLMMKVNPDQPGHRDANFQT 59
Query: 108 FGCGSAIAS-SSLATEWVKGKTVDEAL-KLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAA 164
FGCGSAIAS S TE + GKTVDEAL ++ N DIA+ L LPP K+ CS++ +A+ AA
Sbjct: 60 FGCGSAIASLRSALTEMIIGKTVDEALGQVTNRDIAEYLGGLPPEKMDCSVMGAEALPAA 119
Query: 165 LSDYR 169
+++++
Sbjct: 120 IANFK 124
>sp|Q1AWB1|MNMA_RUBXD Bifunctional protein NifU/MnmA OS=Rubrobacter xylanophilus (strain
DSM 9941 / NBRC 16129) GN=nifU/mnmA PE=3 SV=1
Length = 488
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTF 108
Y VI+H NPRN G + G G G ACGD ++ ++V + ++ + +++ +
Sbjct: 4 RYGPRVIEHLVNPRNAGEVGGPS---GVGEAGNAACGDQVRFTLRVGGDLRLQEVRYRAY 60
Query: 109 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELC--LPPVKLHCSMLAEDAIKAALS 166
GC + IA+ S E +G+++ A ++ DI + L LPP K H + LA DA+ A
Sbjct: 61 GCAACIAAGSALAELAEGRSITGAAQISRGDIQEALGGPLPPGKEHGATLALDALHRAFE 120
Query: 167 DYRIKQ 172
DY +Q
Sbjct: 121 DYWSRQ 126
>sp|O32163|NIFU_BACSU NifU-like protein OS=Bacillus subtilis (strain 168) GN=nifU PE=1
SV=1
Length = 147
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 50 YHENVIDHYENPRNVGSLDKK---DKNVGTGLVGAPACGDVMKLQIKVDDNGKII-DAKF 105
Y + ++DHY+NPRN G L+ D N P CGD ++L +K+D G I+ DAKF
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSIVVDMN-------NPTCGDRIRLTMKLD--GDIVEDAKF 61
Query: 106 KTFGCGSAIASSSLATEWVKGKTVDEALKL 135
+ GC ++AS+S+ T+ +KGK ++ AL +
Sbjct: 62 EGEGCSISMASASMMTQAIKGKDIETALSM 91
>sp|Q9X192|NIFU_THEMA NifU-like protein OS=Thermotoga maritima (strain ATCC 43589 / MSB8
/ DSM 3109 / JCM 10099) GN=nifU PE=3 SV=1
Length = 142
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 32/141 (22%)
Query: 48 LHYHENVIDHYENPRNVGSLD-----KKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIID 102
+ Y E ++D+ + + G LD ++ KN+ +CGD + L +KV+D G + D
Sbjct: 5 MMYSEAILDYANSKKFRGKLDDATVIEEGKNI--------SCGDEITLYLKVED-GVVKD 55
Query: 103 AKFKTFGCGSAIASSSLATEWVKGKTVDEAL------------------KLKNTDIAKEL 144
AKF+ GC + AS+SL E + G+ V+E KLKN + ++
Sbjct: 56 AKFEGMGCVISQASASLMLERIIGERVEEIFSLIEEAEKMSRGENFDEGKLKNVTLMSDI 115
Query: 145 CLPPVKLHCSMLAEDAIKAAL 165
P ++ C +LA +K AL
Sbjct: 116 KNYPARVKCFILAWKTLKEAL 136
>sp|Q01180|NIFU_RHOSH Nitrogen fixation protein NifU OS=Rhodobacter sphaeroides GN=nifU
PE=3 SV=1
Length = 246
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 55 IDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAI 114
+D + NPRN G L+ D G G+ GD ++L ++++ G++ +A+F FG AI
Sbjct: 9 LDLFFNPRNAGPLEAADA---VGTAGSLEVGDAIRLMLRIE-AGRVAEARFLAFGGAHAI 64
Query: 115 ASSSLATEWVKG 126
A S T V G
Sbjct: 65 ACGSALTVLVTG 76
>sp|Q00241|NIFU_PLEBO Nitrogen fixation protein NifU (Fragment) OS=Plectonema boryanum
GN=nifU PE=3 SV=1
Length = 205
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 132 ALKLKNTDIAKELC-LPPVKLHCSMLAEDAIKAALSDYR 169
AL + N DIA L LP K+HCS++ ++A++AA+ YR
Sbjct: 1 ALNVSNQDIAAFLGGLPEAKMHCSVMGQEALEAAIFKYR 39
>sp|P26247|NIFU_NOSCO Nitrogen fixation protein NifU (Fragment) OS=Nostoc commune GN=nifU
PE=3 SV=1
Length = 75
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 132 ALKLKNTDIAKELC-LPPVKLHCSMLAEDAIKAALSDYR 169
ALK+ DIA L LP K+HCS++ ++A++AA+ YR
Sbjct: 1 ALKVSMKDIADYLGGLPEAKMHCSVMGQEALEAAIYWYR 39
>sp|Q8U085|CARB_PYRFU Carbamoyl-phosphate synthase large chain OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=carB
PE=3 SV=1
Length = 1056
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 44/149 (29%)
Query: 39 SPKWASTPVLHYHE----NVIDHYENPRNVG-----------SLDKKDKNVGTGLVGAPA 83
S W + L++ E V+D YE R +G SL KK +N G L+G
Sbjct: 589 STDWDMSDRLYFEEITLERVLDIYEFERPIGVVAFAGGQLANSLAKKLENAGVKLLGT-- 646
Query: 84 CGDVMKLQIKVDDNGKIID-----AKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 138
+GK +D AKF I EW+ +++DEA+KL
Sbjct: 647 -------------SGKSVDKAENRAKFSKLLEKLGIPQP----EWISAESIDEAIKL--- 686
Query: 139 DIAKELCLPPVKLHCSMLAEDAIKAALSD 167
AK++ P + +L+ A+K A ++
Sbjct: 687 --AKKIEYPVIVRPSYVLSGTAMKVAWNE 713
>sp|Q5E9N5|CLPB_BOVIN Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2
SV=1
Length = 677
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 86 DVMKLQIKVDDNGKIIDAKFKTFGCGSA--IASSSLATEWVKGKTV---DEALKLKNTDI 140
DV+ + +++ D G++ D K KT C A I +S++A++ + + EAL++ I
Sbjct: 432 DVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRI 491
Query: 141 AKEL 144
A+ L
Sbjct: 492 AENL 495
>sp|Q9WTT2|CLPB_RAT Caseinolytic peptidase B protein homolog OS=Rattus norvegicus
GN=Clpb PE=2 SV=1
Length = 677
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 86 DVMKLQIKVDDNGKIIDAKFKTFGCGSA--IASSSLATEWVKGKTV---DEALKLKNTDI 140
DV+ + +++ D G++ D K KT C A I +S++A++ + + EAL++ I
Sbjct: 432 DVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRI 491
Query: 141 AKEL 144
A+ L
Sbjct: 492 AENL 495
>sp|Q60649|CLPB_MOUSE Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb
PE=1 SV=1
Length = 677
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 86 DVMKLQIKVDDNGKIIDAKFKTFGCGSA--IASSSLATEWVKGKTV---DEALKLKNTDI 140
DV+ + +++ D G++ D K KT C A I +S++A++ + + EAL++ I
Sbjct: 432 DVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRI 491
Query: 141 AKEL 144
A+ L
Sbjct: 492 AENL 495
>sp|Q9H078|CLPB_HUMAN Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB
PE=1 SV=1
Length = 707
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 86 DVMKLQIKVDDNGKIIDAKFKTFGCGSA--IASSSLATEWVKGKTV---DEALKLKNTDI 140
DV+ + +++ D G++ D K KT C A I +S++A++ + + EAL++ I
Sbjct: 462 DVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRI 521
Query: 141 AKEL 144
A+ L
Sbjct: 522 AENL 525
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 94 VDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 135
+D +G II+ + G GS A L E+ +G ++D+A+++
Sbjct: 126 LDPSGSIIEEDYTATGSGSPTAYGVLEAEYEEGMSLDDAIEV 167
>sp|P34025|PRTA_LISMN Zinc metalloproteinase OS=Listeria monocytogenes GN=mpl PE=2 SV=3
Length = 510
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 30 TNNATTLLKSPKWASTPVLHYH-ENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVM 88
+N T + P+++S H++ V D+Y+N + SLD K + + + C +
Sbjct: 262 VSNKTNMFTDPEFSSAVDAHFYASEVYDYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAF 321
Query: 89 --KLQIKVDDNGKIIDAKFKTFGCGSAIASSSL 119
+I D K FK F C I L
Sbjct: 322 WDGREILYGDGDK---KNFKPFSCAKTIVGHEL 351
>sp|Q68WY2|Y383_RICTY Putative peptidyl-prolyl cis-trans isomerase RT0383 OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=RT0383 PE=4
SV=1
Length = 333
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 GTGLVGAPACGDVMKLQIKVDD-NGKIIDAKFKTFGCGSA 113
G+G +G +CG V+ + ++ D N +I KTF GSA
Sbjct: 119 GSGNIGPASCGHVVTVFYQISDMNNNLISEDTKTFTLGSA 158
>sp|Q9ZDD6|Y395_RICPR Putative peptidyl-prolyl cis-trans isomerase RP395 OS=Rickettsia
prowazekii (strain Madrid E) GN=RP395 PE=4 SV=1
Length = 333
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 GTGLVGAPACGDVMKLQIKVDD-NGKIIDAKFKTFGCGSA 113
G+G +G +CG V+ + ++ D N +I KTF GSA
Sbjct: 119 GSGNIGPASCGHVVTVFYQISDMNNNLISEDTKTFTLGSA 158
>sp|Q7WTB2|LACY_LACHE Lactose permease OS=Lactobacillus helveticus GN=lacS PE=2 SV=1
Length = 638
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 51 HENVIDHYENPRNVGSLDKKDKNVGTGL----VGAPACGDVMKLQIKVDDNGKIIDAKFK 106
H VI+ ++ G ++KK +V TG + APA G++M++ VD++GK K
Sbjct: 460 HAQVIEELKSKLAQGEIEKK-TSVDTGTKEVTIYAPADGELMQMSSVVDEDGKPFPGK-- 516
Query: 107 TFGCGSAIASSS 118
G AI SS
Sbjct: 517 ----GFAIEPSS 524
>sp|Q92I78|Y542_RICCN Putative peptidyl-prolyl cis-trans isomerase RC0542 OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=RC0542 PE=4
SV=1
Length = 331
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 74 VGTGLVGAPACGDVMKLQIKVDD-NGKIIDAKFKTFGCGSA 113
+G+G +G +CG V+ + ++ D N +I KTF GSA
Sbjct: 117 LGSGNIGPASCGHVVTVFYQISDMNNTLISEDTKTFTLGSA 157
>sp|Q4ULV6|Y616_RICFE Putative peptidyl-prolyl cis-trans isomerase RF_0616 OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0616 PE=4
SV=1
Length = 331
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 74 VGTGLVGAPACGDVMKLQIKVDD-NGKIIDAKFKTFGCGSA 113
+G+G +G +CG V+ + ++ D N +I KTF GSA
Sbjct: 117 LGSGNIGPASCGHVVTVFYQISDMNNTLISEDTKTFTLGSA 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,390,827
Number of Sequences: 539616
Number of extensions: 2704127
Number of successful extensions: 6721
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6646
Number of HSP's gapped (non-prelim): 52
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)