Query psy10992
Match_columns 179
No_of_seqs 143 out of 1109
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 15:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvl_A NIFU-like protein; prot 100.0 9.1E-44 3.1E-48 273.3 14.4 127 48-174 2-128 (129)
2 4eb5_C NIFU protein (NIFU-1); 100.0 1.3E-41 4.6E-46 268.1 14.3 125 49-177 1-126 (153)
3 2z7e_A ISCU protein, NIFU-like 100.0 3.3E-41 1.1E-45 266.9 13.6 127 47-176 2-130 (157)
4 2qq4_A Iron-sulfur cluster bio 100.0 2.1E-38 7E-43 246.0 14.1 116 46-165 4-137 (138)
5 1xjs_A NIFU-like protein; SR17 100.0 2E-38 6.9E-43 248.4 11.4 121 44-169 5-144 (147)
6 1su0_B NIFU like protein ISCU; 100.0 1.2E-37 4.2E-42 246.9 12.1 118 46-168 6-142 (159)
7 3g0m_A Cysteine desulfuration 93.8 1.1 3.7E-05 34.0 11.3 96 47-152 24-124 (141)
8 1ni7_A ER75, hypothetical prot 91.4 1.2 4.1E-05 34.4 8.7 81 81-168 58-143 (155)
9 1wlo_A SUFE protein; structura 81.3 1.7 5.8E-05 32.7 4.2 105 47-167 19-128 (136)
10 3r07_C Putative lipoate-protei 78.0 2.5 8.6E-05 29.4 4.0 54 84-139 16-69 (91)
11 1i4j_A 50S ribosomal protein L 74.7 8.3 0.00028 27.8 6.1 45 117-171 17-61 (110)
12 2ftc_M Mitochondrial ribosomal 72.1 9.4 0.00032 27.5 5.9 45 117-171 13-57 (110)
13 2zkr_r 60S ribosomal protein L 69.9 9.8 0.00034 30.1 6.0 61 111-171 23-105 (184)
14 3r8s_S 50S ribosomal protein L 68.6 15 0.00051 26.4 6.3 45 117-171 17-61 (110)
15 3j21_S 50S ribosomal protein L 63.5 19 0.00065 27.5 6.4 56 116-171 31-105 (155)
16 1vq8_R 50S ribosomal protein L 59.5 21 0.0007 27.4 5.9 58 114-171 26-103 (155)
17 1fs1_B SKP1, cyclin A/CDK2-ass 53.8 13 0.00044 27.4 3.8 25 113-137 110-134 (141)
18 2zjr_P 50S ribosomal protein L 49.5 16 0.00053 27.4 3.6 49 112-170 33-81 (134)
19 3iz5_V 60S ribosomal protein L 49.2 31 0.0011 26.8 5.4 56 116-171 28-106 (171)
20 3u5e_P L20A, YL17, 60S ribosom 45.9 30 0.001 27.2 4.9 57 115-171 27-105 (184)
21 2ast_A S-phase kinase-associat 45.6 20 0.00069 26.7 3.8 26 112-137 114-139 (159)
22 2p1m_A SKP1-like protein 1A; F 43.4 20 0.00069 26.9 3.5 26 112-137 113-138 (160)
23 1dd4_C 50S ribosomal protein L 39.6 43 0.0015 19.9 3.8 29 119-148 5-33 (40)
24 2e5a_A Lipoyltransferase 1; li 39.4 34 0.0012 28.9 4.7 43 87-130 269-311 (347)
25 3v7d_A Suppressor of kinetocho 38.3 30 0.001 26.3 3.8 22 116-137 125-146 (169)
26 4a17_Q RPL17, 60S ribosomal pr 35.3 39 0.0013 26.6 4.0 56 116-171 30-107 (183)
27 1u07_A TONB protein; beta-hair 24.0 79 0.0027 20.8 3.6 25 87-111 26-51 (90)
28 3bbo_U Ribosomal protein L22; 23.3 27 0.00093 27.9 1.2 43 119-171 48-90 (199)
29 3mso_A Steroid delta-isomerase 20.2 2E+02 0.0067 20.5 5.3 37 91-127 101-137 (143)
No 1
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=100.00 E-value=9.1e-44 Score=273.33 Aligned_cols=127 Identities=74% Similarity=1.186 Sum_probs=119.0
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCC
Q psy10992 48 LHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGK 127 (179)
Q Consensus 48 ~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GK 127 (179)
++|+++|+|||+||+|+|.+++|+..+++++.+||+|||+|+|||+|+++|+|+|++|+++||++++||+|+|+++++||
T Consensus 2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gk 81 (129)
T 3lvl_A 2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK 81 (129)
T ss_dssp -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999866567788999999999999999745899999999999999999999999999999
Q ss_pred CHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHhchh
Q psy10992 128 TVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNS 174 (179)
Q Consensus 128 tl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k~~~ 174 (179)
|++||..|.++++.+.|++||+|++|++|+|+||++||.+|+.|+.+
T Consensus 82 t~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~k~~~ 128 (129)
T 3lvl_A 82 SLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREA 128 (129)
T ss_dssp CHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred cHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999988754
No 2
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=100.00 E-value=1.3e-41 Score=268.12 Aligned_cols=125 Identities=50% Similarity=0.883 Sum_probs=117.1
Q ss_pred hhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCC
Q psy10992 49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKT 128 (179)
Q Consensus 49 lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKt 128 (179)
+|+++|+|||+||+|+|.+++|+ +++..+||+|||+|+|||+|+ +|+|+|++|+++||+++|||||+|+++++|||
T Consensus 1 lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~nP~CGD~i~l~lkv~-d~~I~D~~F~g~GCais~ASaS~mtelv~GKt 76 (153)
T 4eb5_C 1 MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFGCAAAIATSSMATEMAKGKT 76 (153)
T ss_dssp -CCHHHHHHHHSCSSBSCCSSCS---EEEEEECTTTCCEEEEEEEES-SSBEEEEEEEEESCHHHHHHHHHHHHHHTTCB
T ss_pred CcHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEec-CCeEEEEEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999998 356889999999999999997 68999999999999999999999999999999
Q ss_pred HHHHHHhhhHhHHhhc-CCCCCcchhhHHHHHHHHHHHHHHHHhchhhhh
Q psy10992 129 VDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDYRIKQNSAKA 177 (179)
Q Consensus 129 l~Ea~~i~~~~i~~~L-~~~~~R~~CA~La~~AL~~Al~~y~~k~~~~~~ 177 (179)
++||..|..+++.+.| ++||+|+||++|+|+||++||.+|+.+++..++
T Consensus 77 leEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~~~ 126 (153)
T 4eb5_C 77 IEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGKIDK 126 (153)
T ss_dssp HHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 9999999999998889 699999999999999999999999998776544
No 3
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=100.00 E-value=3.3e-41 Score=266.95 Aligned_cols=127 Identities=50% Similarity=0.864 Sum_probs=118.6
Q ss_pred HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEEC-CCCcEEEeEEeeccchHHHHHHHHHHHHhc
Q psy10992 47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD-DNGKIIDAKFKTFGCGSAIASSSLATEWVK 125 (179)
Q Consensus 47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~-~~g~I~di~F~~~GCais~ASASil~e~~~ 125 (179)
.++|+++|++||+||+|+|.+++|+ +++..+||+|||+|+|||+|+ ++|+|+|++|+++||+++|||+|+|+++++
T Consensus 2 ~~lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~ 78 (157)
T 2z7e_A 2 SFEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVK 78 (157)
T ss_dssp TTHHHHHHHHHHHSCSSBSCCTTCS---EEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999998 467889999999999999995 478999999999999999999999999999
Q ss_pred CCCHHHHHHhhhHhHHhhc-CCCCCcchhhHHHHHHHHHHHHHHHHhchhhh
Q psy10992 126 GKTVDEALKLKNTDIAKEL-CLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176 (179)
Q Consensus 126 GKtl~Ea~~i~~~~i~~~L-~~~~~R~~CA~La~~AL~~Al~~y~~k~~~~~ 176 (179)
|||++||..|.++++.+.| ++||+|++|++|+|+||++||.+|+.+++..+
T Consensus 79 Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~~~~ 130 (157)
T 2z7e_A 79 GKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRVE 130 (157)
T ss_dssp TSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTCHH
T ss_pred CCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999888889 69999999999999999999999998876543
No 4
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-38 Score=245.96 Aligned_cols=116 Identities=37% Similarity=0.558 Sum_probs=105.1
Q ss_pred hHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhc
Q psy10992 46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVK 125 (179)
Q Consensus 46 ~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~ 125 (179)
+.++|+++|+|||+||+|+|.+++|+ ++++.+||+|||+|+|||+|+ +|+|+|++|+++||++++||+|+|+++++
T Consensus 4 l~~lY~~~Ildh~~nP~n~G~l~~~~---~~~~~~np~CGD~i~l~l~v~-~~~I~d~~f~~~GCais~ASaS~~te~i~ 79 (138)
T 2qq4_A 4 LDELYREILLDHYQSPRNFGVLPQAT---KQAGGMNPSCGDQVEVMVLLE-GDTIADIRFQGQGCAISTASASLMTEAVK 79 (138)
T ss_dssp HHHHHHHHHHHHHHSCTTBSCCTTCS---EEEEEECTTTCCEEEEEEEEE-TTEEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCC---eEEeeCCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999988 456889999999999999996 68999999999999999999999999999
Q ss_pred CCCHHHHHHhhhHhHH---------------hhc---CCCCCcchhhHHHHHHHHHHH
Q psy10992 126 GKTVDEALKLKNTDIA---------------KEL---CLPPVKLHCSMLAEDAIKAAL 165 (179)
Q Consensus 126 GKtl~Ea~~i~~~~i~---------------~~L---~~~~~R~~CA~La~~AL~~Al 165 (179)
|||++||..|.+.++. +.| ..+|+|+||++|+|+||++||
T Consensus 80 Gkt~~ea~~i~~~~~~ml~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al 137 (138)
T 2qq4_A 80 GKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEAL 137 (138)
T ss_dssp TSBHHHHHHHHHHHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCchhhhhHHhhccCcccCcchhhHHHHHHHHHHHHh
Confidence 9999999999986521 112 247999999999999999997
No 5
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=100.00 E-value=2e-38 Score=248.39 Aligned_cols=121 Identities=31% Similarity=0.546 Sum_probs=107.7
Q ss_pred cchHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHH
Q psy10992 44 STPVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEW 123 (179)
Q Consensus 44 ~~~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~ 123 (179)
++++++|+++|+|||+||+|+|.+ +|+ ++++.+||+|||+|+|||+|+ +|+|+|++|+++||+++|||+|+|+++
T Consensus 5 ~~l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~-~~~I~d~~f~~~GCais~ASaS~mte~ 79 (147)
T 1xjs_A 5 ANLDTLYRQVIMDHYKNPRNKGVL-NDS---IVVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQA 79 (147)
T ss_dssp TTTHHHHHHHHHHHHHSCCCCCCC-CSS---EEEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEEC-CCeEEEEEEEecCCHHHHHHHHHHHHH
Confidence 457899999999999999999999 887 456889999999999999996 689999999999999999999999999
Q ss_pred hcCCCHHHHHHhhhHhHH----------hhc---------CCCCCcchhhHHHHHHHHHHHHHHH
Q psy10992 124 VKGKTVDEALKLKNTDIA----------KEL---------CLPPVKLHCSMLAEDAIKAALSDYR 169 (179)
Q Consensus 124 ~~GKtl~Ea~~i~~~~i~----------~~L---------~~~~~R~~CA~La~~AL~~Al~~y~ 169 (179)
++|||++||..|.+.+.. +.| ..+|+|+||++|+|+||++||.+|+
T Consensus 80 v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~~~e 144 (147)
T 1xjs_A 80 IKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAKEE 144 (147)
T ss_dssp HTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHHHSCSTT
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999986321 112 3479999999999999999997664
No 6
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=100.00 E-value=1.2e-37 Score=246.87 Aligned_cols=118 Identities=37% Similarity=0.518 Sum_probs=105.4
Q ss_pred hHhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhc
Q psy10992 46 PVLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVK 125 (179)
Q Consensus 46 ~~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~ 125 (179)
++++|+++|+|||+||+|+|.+ +|+. +++.+||+|||+|+|||+|+ +|+|+|++|+++||+++|||+|+|+++++
T Consensus 6 l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~ 80 (159)
T 1su0_B 6 LNHLYMAVVADHSKRPHHHGQL-DGVE---AVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVI 80 (159)
T ss_dssp CCHHHHHHHHHHHHSCSSBSCC-TTCC---CEEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999 9883 56789999999999999997 68999999999999999999999999999
Q ss_pred CCCHHHHHHhhhHhH--------H--hhc---------CCCCCcchhhHHHHHHHHHHHHHH
Q psy10992 126 GKTVDEALKLKNTDI--------A--KEL---------CLPPVKLHCSMLAEDAIKAALSDY 168 (179)
Q Consensus 126 GKtl~Ea~~i~~~~i--------~--~~L---------~~~~~R~~CA~La~~AL~~Al~~y 168 (179)
|||++||..|.+.+. . +.| ..+|+|++|++|+|+||++||.++
T Consensus 81 Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~~Al~~~ 142 (159)
T 1su0_B 81 GKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIKRS 142 (159)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHhh
Confidence 999999999988632 1 223 236999999999999999999775
No 7
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=93.82 E-value=1.1 Score=34.01 Aligned_cols=96 Identities=10% Similarity=0.149 Sum_probs=67.3
Q ss_pred HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhc
Q psy10992 47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVK 125 (179)
Q Consensus 47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~ 125 (179)
++.|+ .|+++.+.-+- +++... +-...-+.|-..|-|...++++|+ +.|.+.. =.|...-.+++.+.+.
T Consensus 24 e~Ry~-~LI~lgk~Lp~---lpe~~k---~~~~~V~GCqS~VWl~~~~~~~g~---l~f~adSDA~IvkGl~alL~~~~~ 93 (141)
T 3g0m_A 24 EEKYL-YIIELGQRLAE---LNPQDR---NPQNTIHGCQSQVWIVMRRNANGI---IELQGDSDAAIVKGLMAVVFILYH 93 (141)
T ss_dssp HHHHH-HHHHHHHTSCC---CCGGGC---SGGGBCCSSSSCEEEEEEECTTSB---EEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHccCCC---CCHHHc---CccCcCCCCccCeeEEEEEcCCCE---EEEEecCccHHHHHHHHHHHHHHc
Confidence 45564 46778776332 222211 111234689999999988865675 5787764 4578889999999999
Q ss_pred CCCHHHHHHhhhHhHHhhcC----CCCCcch
Q psy10992 126 GKTVDEALKLKNTDIAKELC----LPPVKLH 152 (179)
Q Consensus 126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~ 152 (179)
|+|.+|+..++..++.+.|| +.|.|.+
T Consensus 94 G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~n 124 (141)
T 3g0m_A 94 QMTAQDIVHFDVRPWFEKMALAQHLTPSRSQ 124 (141)
T ss_dssp TCBHHHHHHCCCHHHHHHHTCGGGSCHHHHH
T ss_pred CCCHHHHHhCCHHHHHHHcCchhhcCchHHH
Confidence 99999999999955566666 4688876
No 8
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=91.41 E-value=1.2 Score=34.41 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=60.1
Q ss_pred CCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhcCCCHHHHHHhhhHhHHhhcC----CCCCcchhhH
Q psy10992 81 APACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELC----LPPVKLHCSM 155 (179)
Q Consensus 81 np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L~----~~~~R~~CA~ 155 (179)
-+.|-..|-|+..++++| .+.|.++. =.|...-++++.+.+.|+|.+|+.+++..++.+.|| +.|.|.+
T Consensus 58 V~GCqS~VWl~~~~~~dg---~l~F~adSDA~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~N--- 131 (155)
T 1ni7_A 58 IAGCENRVWLGYTVAENG---KMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQ--- 131 (155)
T ss_dssp ECSSSSCEEEECCCCSSS---CCCCEEEESSHHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHH---
T ss_pred CCCCccCeeEEEEEcCCC---EEEEeeCCccHHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCchHHH---
Confidence 368999998887654456 35777764 467889999999999999999999999975566676 4677876
Q ss_pred HHHHHHHHHHHHH
Q psy10992 156 LAEDAIKAALSDY 168 (179)
Q Consensus 156 La~~AL~~Al~~y 168 (179)
++.++.+.|+.+
T Consensus 132 -Gl~am~~~ik~~ 143 (155)
T 1ni7_A 132 -GLNALSEAIIAA 143 (155)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 445555555443
No 9
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=81.33 E-value=1.7 Score=32.70 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=69.8
Q ss_pred HhhhHHHHHHHHhCCCCCCCCCCCCCcccceeecCCCCCcEEEEEEEECCCCcEEEeEEeecc-chHHHHHHHHHHHHhc
Q psy10992 47 VLHYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG-CGSAIASSSLATEWVK 125 (179)
Q Consensus 47 ~~lY~~~Ileh~~nP~n~G~l~~~d~~~~~g~~~np~CGD~I~l~l~i~~~g~I~di~F~~~G-Cais~ASASil~e~~~ 125 (179)
++.|+- |+++.+.-+-. ++.. . ...-+.|-..|-|+..++++| ..+.|.+.. =.|...-++++.+.+.
T Consensus 19 e~Ry~~-LI~lgk~Lp~l---pe~~-~----~~~V~GCqS~VWl~~~~~~~g--~~l~f~~dSDA~IvkGl~alL~~~~~ 87 (136)
T 1wlo_A 19 ELRSQV-LLEYAAKVPPP---PPGV-E----LERVHECQTPFFVHADVEGGK--VRLYFHVPDEAPTVKAFAGLLREGLE 87 (136)
T ss_dssp HHHHHH-HHHHHHTCCCC---CSSC-C----CEECTTSSSCCEEEEEEETTE--EEEEEECSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHH-HHHHHhhCCCC---Chhh-h----hccCCCCccCeEEEEEEeCCc--eEEEEecCCccHHHHHHHHHHHHHHc
Confidence 455654 56776654322 2211 0 122458999998888765444 257888875 4578889999999999
Q ss_pred CCCHHHHHHhhhHhHHhhcC----CCCCcchhhHHHHHHHHHHHHH
Q psy10992 126 GKTVDEALKLKNTDIAKELC----LPPVKLHCSMLAEDAIKAALSD 167 (179)
Q Consensus 126 GKtl~Ea~~i~~~~i~~~L~----~~~~R~~CA~La~~AL~~Al~~ 167 (179)
|+|.+|+.+++.+ +.+.|| +.|.|.+ ++.++-+.|+.
T Consensus 88 G~tp~eIl~~d~~-~~~~lGL~~~LSpsR~n----Gl~am~~~ik~ 128 (136)
T 1wlo_A 88 GESPEAVLEVPPG-FYRGYGLEEFFTPLRLR----GLEAALLRLQA 128 (136)
T ss_dssp TCCTTTTTSSCTT-TTTTTTSHHHHTHHHHH----HHHHHHHHHHH
T ss_pred CCCHHHHHhCCHH-HHHHcCchhhcCchHHH----HHHHHHHHHHH
Confidence 9999999999995 556666 4777876 34444444443
No 10
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=78.05 E-value=2.5 Score=29.43 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=38.2
Q ss_pred CCcEEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCCHHHHHHhhhHh
Q psy10992 84 CGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTD 139 (179)
Q Consensus 84 CGD~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKtl~Ea~~i~~~~ 139 (179)
.| .|++++.++ +|+|+++++.|+==....-.-.-+.+.++|.+.+++.+.....
T Consensus 16 ~G-~v~v~l~v~-~G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~~l~~~ 69 (91)
T 3r07_C 16 KG-LIRVTLDLD-GNRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKINDIIRDF 69 (91)
T ss_dssp SC-EEEEEEEEE-TTEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHHHHHHH
T ss_pred Cc-EEEEEEEEc-CCEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHHHHHhh
Confidence 45 999999996 6999999988773221112345677788999888666555543
No 11
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=74.70 E-value=8.3 Score=27.76 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHh
Q psy10992 117 SSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 117 ASil~e~~~GKtl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k 171 (179)
+-.+++++.|++++||..+... ...+.+..-.+.|+.|..+.+.+
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~----------~pkkaa~~v~klL~sA~aNAe~n 61 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY----------TNKRGAYFVAKVLESAAANAVNN 61 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH----------CCCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHH----------CCHHHHHHHHHHHHHHHHhHHHh
Confidence 4578899999999999988754 34567888899999999998775
No 12
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=72.06 E-value=9.4 Score=27.46 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHh
Q psy10992 117 SSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 117 ASil~e~~~GKtl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k 171 (179)
+-.+++++.|++++||..+..- ...+.+..-.+.|+.|..+.+..
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~f----------~pkkaa~~v~klL~sA~aNA~~~ 57 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLEF----------NDKKGAKIIKEVLLEAQDMAVRD 57 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHHH----------CCHHHHHHHHHHHHHHHHhHHHh
Confidence 4568899999999999988753 34567888889999999887764
No 13
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=69.91 E-value=9.8 Score=30.07 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHhhhHhHHhhc--------------------CCCC--CcchhhHHHHHHHHHHHHHH
Q psy10992 111 GSAIASSSLATEWVKGKTVDEALKLKNTDIAKEL--------------------CLPP--VKLHCSMLAEDAIKAALSDY 168 (179)
Q Consensus 111 ais~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L--------------------~~~~--~R~~CA~La~~AL~~Al~~y 168 (179)
-++-==+-.++.+|.|+++++|..+..+.+...- |... .-.+.+..-.+.|+.|..+.
T Consensus 23 rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~ilklLksA~aNA 102 (184)
T 2zkr_r 23 RVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNA 102 (184)
T ss_dssp CSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 3444456778999999999999999988665321 1111 33578999999999999998
Q ss_pred HHh
Q psy10992 169 RIK 171 (179)
Q Consensus 169 ~~k 171 (179)
+.+
T Consensus 103 e~k 105 (184)
T 2zkr_r 103 ELK 105 (184)
T ss_dssp HHH
T ss_pred HHc
Confidence 765
No 14
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=68.55 E-value=15 Score=26.38 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHh
Q psy10992 117 SSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 117 ASil~e~~~GKtl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k 171 (179)
+-.+++++.|++++||..+..- ...+.+..-.+.|+.|..+.+.+
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~f----------~pkkaa~~v~k~L~sA~aNAe~~ 61 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILTY----------TNKKAAVLVKKVLESAIANAEHN 61 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHhh----------CCHHHHHHHHHHHHHHHHhHHHh
Confidence 4578899999999999988762 33567888899999999998766
No 15
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.54 E-value=19 Score=27.54 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCHHHHHHhhhHhHHhhcCCC-----------------C--CcchhhHHHHHHHHHHHHHHHHh
Q psy10992 116 SSSLATEWVKGKTVDEALKLKNTDIAKELCLP-----------------P--VKLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 116 SASil~e~~~GKtl~Ea~~i~~~~i~~~L~~~-----------------~--~R~~CA~La~~AL~~Al~~y~~k 171 (179)
=+-.++++|.|+++++|..+....+...--+| . .-.+++..-.+.|+.|..+.+.+
T Consensus 31 k~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~k 105 (155)
T 3j21_S 31 LAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQK 105 (155)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHHHHHHHHHHHHc
Confidence 35678899999999999999988655322111 1 23478888899999999998764
No 16
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=59.49 E-value=21 Score=27.36 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhhhHhHHhhc------------------CCCC--CcchhhHHHHHHHHHHHHHHHHh
Q psy10992 114 IASSSLATEWVKGKTVDEALKLKNTDIAKEL------------------CLPP--VKLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 114 ~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L------------------~~~~--~R~~CA~La~~AL~~Al~~y~~k 171 (179)
-==+-.++++|.|+++++|..+....+...- +... .-.+.+..-.+.|+.|..+.+.+
T Consensus 26 ~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~k 103 (155)
T 1vq8_R 26 FKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQ 103 (155)
T ss_dssp HHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 3345678999999999999999988654221 1111 34578899999999999998776
No 17
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=53.78 E-value=13 Score=27.41 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHhhh
Q psy10992 113 AIASSSLATEWVKGKTVDEALKLKN 137 (179)
Q Consensus 113 s~ASASil~e~~~GKtl~Ea~~i~~ 137 (179)
.-.++..++.+++|||++|++++-.
T Consensus 110 ldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 110 LDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 3455678899999999999887653
No 18
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=49.52 E-value=16 Score=27.36 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHH
Q psy10992 112 SAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRI 170 (179)
Q Consensus 112 is~ASASil~e~~~GKtl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~ 170 (179)
+|-==+-.++++|.|++++||..+... ...+.+....+.|+.|+.+.+.
T Consensus 33 vSpkK~r~Va~~IRG~~v~eAl~~L~f----------~pkKaA~~v~klL~sA~aNAe~ 81 (134)
T 2zjr_P 33 MSPRKVRLVVDVIRGKSVQDAEDLLRF----------IPRSASEPVAKVLNSAKANALH 81 (134)
T ss_dssp SCHHHHHHHHHHSTTSBHHHHHHHHHH----------CCCTTHHHHHHHHTTTHHHHTT
T ss_pred CcHHHHHHHHHHHcCCcHHHHHHHHHH----------CcHhHHHHHHHHHHHHHHhHHH
Confidence 333446788999999999999988755 3356677778888888877753
No 19
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=49.17 E-value=31 Score=26.82 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCHHHHHHhhhHhHHhhc---------------------CCCCC--cchhhHHHHHHHHHHHHHHHHh
Q psy10992 116 SSSLATEWVKGKTVDEALKLKNTDIAKEL---------------------CLPPV--KLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 116 SASil~e~~~GKtl~Ea~~i~~~~i~~~L---------------------~~~~~--R~~CA~La~~AL~~Al~~y~~k 171 (179)
=+-.+++.|.|+++++|..+....+...- +.... -.+++..-.+.|+.|..+.+.+
T Consensus 28 k~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~k 106 (171)
T 3iz5_V 28 NTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVK 106 (171)
T ss_dssp HHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCSCEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccccCCchHHHHHHHHHHHHHHHHHHHc
Confidence 35578899999999999999987654221 11111 3578888899999999998764
No 20
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=45.90 E-value=30 Score=27.24 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhhHhHHhh--------------------cCCCCC--cchhhHHHHHHHHHHHHHHHHh
Q psy10992 115 ASSSLATEWVKGKTVDEALKLKNTDIAKE--------------------LCLPPV--KLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 115 ASASil~e~~~GKtl~Ea~~i~~~~i~~~--------------------L~~~~~--R~~CA~La~~AL~~Al~~y~~k 171 (179)
==+-.+++.|.|+++++|..+....+... .|.... -.+++..-.+.|+.|..+.+.+
T Consensus 27 kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~ilklLksA~aNAe~k 105 (184)
T 3u5e_P 27 KNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAK 105 (184)
T ss_dssp HHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 34567889999999999999998754321 122222 3578888899999999998764
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=45.60 E-value=20 Score=26.75 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHhhh
Q psy10992 112 SAIASSSLATEWVKGKTVDEALKLKN 137 (179)
Q Consensus 112 is~ASASil~e~~~GKtl~Ea~~i~~ 137 (179)
+.-.++..++.+++|||++|+..+-.
T Consensus 114 Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 114 LLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 34556778999999999999888754
No 22
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=43.36 E-value=20 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHhhh
Q psy10992 112 SAIASSSLATEWVKGKTVDEALKLKN 137 (179)
Q Consensus 112 is~ASASil~e~~~GKtl~Ea~~i~~ 137 (179)
+.-.++..++.+++|||++|++.+-.
T Consensus 113 Lldl~c~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 113 LLDLTCQTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 44566778899999999999888754
No 23
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=39.57 E-value=43 Score=19.86 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.0
Q ss_pred HHHHHhcCCCHHHHHHhhhHhHHhhcCCCC
Q psy10992 119 LATEWVKGKTVDEALKLKNTDIAKELCLPP 148 (179)
Q Consensus 119 il~e~~~GKtl~Ea~~i~~~~i~~~L~~~~ 148 (179)
=+.+.+.++|+-|+.++... +++.+|++.
T Consensus 5 ~iie~i~~lTvlE~~eLvk~-leekfGVsa 33 (40)
T 1dd4_C 5 EIIEAIEKLTVSELAELVKK-LEDKFGVTA 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHHH-HHHHTCCCS
T ss_pred HHHHHHHhCcHHHHHHHHHH-HHHHHCCCc
Confidence 36788999999999999887 577788765
No 24
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=39.43 E-value=34 Score=28.90 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred EEEEEEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCCCHH
Q psy10992 87 VMKLQIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVD 130 (179)
Q Consensus 87 ~I~l~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GKtl~ 130 (179)
.|++.+.|+ +|+|+++++.+.|=........-+.+.++|.+.+
T Consensus 269 ~v~~~~~v~-~g~I~~~~i~~~~d~~~~~~~~~l~~~L~G~~~~ 311 (347)
T 2e5a_A 269 EIKVFIDVK-NGRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFS 311 (347)
T ss_dssp EEEEEEEEE-TTEEEEEEEECCTTTSCHHHHHHHHHHHTTSBSC
T ss_pred EEEEEEEEc-CCEEEEEEEEecCCcCChhHHHHHHHHhCCCCCC
Confidence 677888885 6999999999877777777677788889998764
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=38.34 E-value=30 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCHHHHHHhhh
Q psy10992 116 SSSLATEWVKGKTVDEALKLKN 137 (179)
Q Consensus 116 SASil~e~~~GKtl~Ea~~i~~ 137 (179)
++-.++.+++|||++|++++-.
T Consensus 125 ~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 125 GCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHcC
Confidence 4567788999999999987754
No 26
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=35.34 E-value=39 Score=26.62 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCHHHHHHhhhHhHHhh--------------------cCCCCCc--chhhHHHHHHHHHHHHHHHHh
Q psy10992 116 SSSLATEWVKGKTVDEALKLKNTDIAKE--------------------LCLPPVK--LHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 116 SASil~e~~~GKtl~Ea~~i~~~~i~~~--------------------L~~~~~R--~~CA~La~~AL~~Al~~y~~k 171 (179)
=+-.+++.|.|+++++|..+..+.+... .|....| .+++..-.+.|+.|..+.+.+
T Consensus 30 k~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~ilklLksA~aNAe~k 107 (183)
T 4a17_Q 30 NTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQAK 107 (183)
T ss_dssp HHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3557889999999999999998754321 1222222 467888889999998887544
No 27
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=23.98 E-value=79 Score=20.82 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=19.2
Q ss_pred EEEEEEEECCCCcEEEeEEe-eccch
Q psy10992 87 VMKLQIKVDDNGKIIDAKFK-TFGCG 111 (179)
Q Consensus 87 ~I~l~l~i~~~g~I~di~F~-~~GCa 111 (179)
+|.+.+.|+.+|+|.+++.. +.|-.
T Consensus 26 ~V~v~~~i~~~G~v~~~~v~~ssg~~ 51 (90)
T 1u07_A 26 QVKVKFDVTPDGRVDNVQILSAKPAN 51 (90)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEESSS
T ss_pred EEEEEEEECCCCCEEEEEEEecCCcH
Confidence 57888899888999999864 44543
No 28
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=23.25 E-value=27 Score=27.91 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHhcCCCHHHHHHhhhHhHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHh
Q psy10992 119 LATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIK 171 (179)
Q Consensus 119 il~e~~~GKtl~Ea~~i~~~~i~~~L~~~~~R~~CA~La~~AL~~Al~~y~~k 171 (179)
.++++|.|++++||..+... .| .+.+....+.|+.|+++.+.+
T Consensus 48 ~Vad~IRG~~V~eAl~iL~f--------~P--kKaA~~V~KlLkSA~ANAe~n 90 (199)
T 3bbo_U 48 RVIDQIRGRSYAETLMILEL--------MP--YRACYPIFKLIYSAAANASHN 90 (199)
T ss_dssp TTHHHHTTCBTTTTTTTGGG--------CC--CTTHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHCCCcHHHHHHHHHH--------CC--HhHHHHHHHHHHHHHHhHHhc
Confidence 56788999999999887753 23 336777888999999888764
No 29
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=20.16 E-value=2e+02 Score=20.48 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=27.0
Q ss_pred EEEECCCCcEEEeEEeeccchHHHHHHHHHHHHhcCC
Q psy10992 91 QIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGK 127 (179)
Q Consensus 91 ~l~i~~~g~I~di~F~~~GCais~ASASil~e~~~GK 127 (179)
.+.++++|+|.++..-.+==...+|-+..|...+.+.
T Consensus 101 v~~~~~dGkI~~~~~~~~P~~~~~~~~~~~~~~~~~~ 137 (143)
T 3mso_A 101 MIRFDDDGRIVDFEVMVRPMSGLQALGEEMGRRLASY 137 (143)
T ss_dssp EEEECTTSCEEEEEEEEESHHHHHHHHHHHHHHTTC-
T ss_pred EEEECCCCcEEEEEEEECcHHHHHHHHHHHHHHHHHh
Confidence 3567667999999877776677777777777766553
Done!