RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10992
(179 letters)
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse
(Mus musculus), mitochondrial [TaxId: 10090]}
Length = 130
Score = 165 bits (420), Expect = 5e-54
Identities = 102/122 (83%), Positives = 111/122 (90%)
Query: 56 DHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFGCGSAIA 115
ENPRNVGSLDK KNVGTGLVGAPACGDVMKLQI+VD+ GKI+DA+FKTFGCGSAIA
Sbjct: 5 SSGENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIA 64
Query: 116 SSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSA 175
SSSLATEWVKGKTV+EAL +KNTDIAKELCLPPVKLHCSMLAEDAIKAAL+DY++KQ S
Sbjct: 65 SSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESK 124
Query: 176 KA 177
Sbjct: 125 SG 126
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus
influenzae [TaxId: 727]}
Length = 134
Score = 160 bits (407), Expect = 5e-52
Identities = 98/124 (79%), Positives = 112/124 (90%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y E VIDHYENPRNVGSLDKKD NVGTG+VGAPACGDVM+LQIKVDDNG I DAKFKT+G
Sbjct: 3 YSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYG 62
Query: 110 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYR 169
CGSAIASSSL TEWVKGK+++EA +KN+ IA+EL LPPVK+HCS+LAEDAIKAA++DY+
Sbjct: 63 CGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYK 122
Query: 170 IKQN 173
KQ
Sbjct: 123 AKQG 126
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Length = 147
Score = 111 bits (278), Expect = 2e-32
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 24/139 (17%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y + ++DHY+NPRN G L+ + P CGD ++L +K+D + DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65
Query: 110 CGSAIASSSLATEWVKGKTVDEALK-------------------LKNTDIAKELCLPPVK 150
C ++AS+S+ T+ +KGK ++ AL L + + + + P +
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPAR 125
Query: 151 LHCSMLAEDAIKAALSDYR 169
+ C+ L+ A++ ++
Sbjct: 126 IKCATLSWKALEKGVAKEE 144
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes
[TaxId: 1314]}
Length = 136
Score = 102 bits (255), Expect = 5e-29
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 24/135 (17%)
Query: 50 YHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFKTFG 109
Y V DH + P + G LD V + P CGDV+ L +K D++ KI D F G
Sbjct: 5 YMAVVADHSKRPHHHGQLD----GVEAVQLNNPTCGDVISLTVKFDED-KIEDIAFAGNG 59
Query: 110 CGSAIASSSLATEWVKGKTVDEALK-------------------LKNTDIAKELCLPPVK 150
C + ASSS+ T+ V GK+ +EAL L ++ + P +
Sbjct: 60 CTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQR 119
Query: 151 LHCSMLAEDAIKAAL 165
+ CS LA +A+K A+
Sbjct: 120 IKCSTLAWNALKEAI 134
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 27.8 bits (61), Expect = 0.63
Identities = 12/100 (12%), Positives = 25/100 (25%), Gaps = 3/100 (3%)
Query: 49 HYHENVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDA-KFKT 107
E + + + + + V L + L + I
Sbjct: 68 AKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILA 127
Query: 108 FGCGSAIASSSLATEWVKGKTVDEALKL--KNTDIAKELC 145
G G A ++ A ++ + A E+C
Sbjct: 128 IGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEIC 167
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 27.2 bits (60), Expect = 0.79
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 124 VKGKTVDEALKLKNTDIAKELCLPPVKLHCSMLAEDAIKAALSDYRIKQNSAK 176
+KGKT EA+ I + + P K H S + + R + ++K
Sbjct: 35 IKGKTAGEAVDYLEAVIEGDQPV-PFKQHNSGVGHKSKVDGWDAGRYPEKASK 86
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 25.9 bits (56), Expect = 2.4
Identities = 5/42 (11%), Positives = 13/42 (30%)
Query: 94 VDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 135
+ G + + G GS + + + +E +
Sbjct: 122 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDF 163
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 25.1 bits (54), Expect = 4.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 98 GKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 135
G + + G GS A + L + W + T +EA+KL
Sbjct: 117 GSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
phosphate kinase (HMP-phosphate kinase, ThiD)
{Salmonella typhimurium [TaxId: 90371]}
Length = 266
Score = 25.2 bits (54), Expect = 5.4
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 106 KTFGCGSAIASSSLATEWVKGKTVDEALKL 135
K S++LA + ++ E +
Sbjct: 206 KNTHGTGCTLSAALAALRPRHRSWGETVNE 235
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga
maritima [TaxId: 2336]}
Length = 319
Score = 25.0 bits (53), Expect = 5.5
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 107 TFGCGSAIASSSLATEWVKGKTVDEALKLKN 137
G G A + + G E K
Sbjct: 256 LLGAGDAYVAGMVYYFIKHGANFLEMAKFGF 286
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 110
Score = 24.3 bits (52), Expect = 6.8
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 89 KLQIKVDDNGKIIDAKFKTFG 109
L + G DA FG
Sbjct: 88 DLDLTASVGGTPSDAAKSKFG 108
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 24.8 bits (54), Expect = 7.3
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 11/39 (28%)
Query: 73 NVGTGLVGAPACGDVMK----------LQIKVDDNGKII 101
+ G L+ P G +M I +D +G I
Sbjct: 511 SAGGRLI-VPITGAIMTMPGLPKRPAACNIDIDADGVIT 548
>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 23.2 bits (50), Expect = 8.6
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 82 PACGDVMKL-QIKVDDNGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 136
+ + K + ++ + + + A +SS K + + L L+
Sbjct: 20 IHLEMLKEWDGFKKGEVVRVFNEEGRLLALAEAERNSSFLETLRKHERNERVLTLR 75
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga
maritima [TaxId: 2336]}
Length = 288
Score = 24.5 bits (52), Expect = 8.8
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 107 TFGCGSAIASSSLATEWVKGKTVDEALKLKN 137
G G ++ L K ++++A K
Sbjct: 236 RTGRGDTCTAAFLVGFVFKKMSIEKATKFAA 266
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 24.6 bits (52), Expect = 9.9
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 92 IKVDDNGKIIDAKFKTFGC 110
I+ D +I + + F C
Sbjct: 27 IRTDSEFNVIG-EPEVFYC 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.380
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,576
Number of extensions: 27825
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 20
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)