BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10995
         (265 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IX0|A Chain A, Crystal Structure Of Human Seminal Plasma Protein Psp94
 pdb|3IX0|B Chain B, Crystal Structure Of Human Seminal Plasma Protein Psp94
 pdb|3IX0|C Chain C, Crystal Structure Of Human Seminal Plasma Protein Psp94
 pdb|3IX0|D Chain D, Crystal Structure Of Human Seminal Plasma Protein Psp94
          Length = 94

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 63  CPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLC 110
           C + P+    G     CMD  G        W  + C  CTC E ++ C
Sbjct: 2   CYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETCTCYETEISC 49


>pdb|2IZ3|A Chain A, Solution Structure Of Human And Porcine Beta-
           Microseminoprotein
          Length = 97

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 63  CPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLC 110
           C + P+    G     CMD  G        W  + C  CTC E ++ C
Sbjct: 5   CYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETCTCYETEISC 52


>pdb|1U5M|A Chain A, Structure Of A Chordin-Like Cysteine-Rich Repeat (Vwc
          Module) From Collagen Iia
          Length = 73

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 14 EDGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTLS-CQHP-IPANSTQCCPYCP 67
          +DG   +D ++W+ + CR C C  G  +C  I C  +  C  P IP    +CCP CP
Sbjct: 12 QDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFG--ECCPICP 66



 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 74  HEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCP-AAACSNPRPPEPGTCC 132
            EA  C+   G+   +   W   PC  C C  G VLC    C     C +P  P  G CC
Sbjct: 5   QEAGSCVQ-DGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPF-GECC 62

Query: 133 PRC 135
           P C
Sbjct: 63  PIC 65


>pdb|2OR8|A Chain A, Tim-1
 pdb|2OR8|B Chain B, Tim-1
          Length = 116

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 80  MDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQ-QCPAAACSN 122
           MD + E+K    H    PCT  T R     C+ + QCP++AC N
Sbjct: 1   MDSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQN 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.466 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,984,685
Number of Sequences: 62578
Number of extensions: 387902
Number of successful extensions: 760
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 23
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)