Query psy10995
Match_columns 265
No_of_seqs 178 out of 1311
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 15:30:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5m_A Cartilage, alpha 1 type 99.4 6.8E-13 2.3E-17 95.0 6.7 58 11-69 9-68 (73)
2 1u5m_A Cartilage, alpha 1 type 99.4 1.5E-12 5.2E-17 93.2 7.3 61 76-138 7-68 (73)
3 3bk3_C Crossveinless 2, bone m 99.0 2.8E-10 9.6E-15 79.7 5.0 56 12-68 10-67 (67)
4 3bk3_C Crossveinless 2, bone m 98.9 1.1E-09 3.8E-14 76.7 4.4 57 77-136 8-66 (67)
5 2xtt_A Protease inhibitor SGPI 95.9 0.0074 2.5E-07 36.5 3.5 29 20-48 5-34 (36)
6 3ejh_A Fibronectin; fibronecti 95.7 0.02 6.8E-07 41.8 5.7 72 11-114 2-88 (93)
7 1gl0_I Protease inhibitor LCMI 95.2 0.026 8.8E-07 33.7 3.9 29 20-48 5-34 (35)
8 1o9a_A Fibronectin; cell adhes 95.2 0.029 9.8E-07 41.0 4.9 74 11-112 4-90 (93)
9 3arc_L Photosystem II reaction 94.9 0.032 1.1E-06 33.1 3.7 25 238-262 11-35 (37)
10 2xtt_A Protease inhibitor SGPI 94.7 0.023 7.9E-07 34.3 2.9 28 89-117 6-34 (36)
11 3ix0_A Beta-microseminoprotein 94.4 0.034 1.2E-06 41.0 3.6 37 77-113 16-52 (94)
12 1xhh_A Beta-microseminoprotein 94.0 0.045 1.5E-06 40.0 3.5 35 78-112 14-48 (91)
13 2cg7_A Fibronectin; signaling 93.9 0.11 3.6E-06 37.9 5.3 67 14-113 9-90 (90)
14 2rl0_A Fibronectin; 4F15F1, be 93.4 0.18 6.1E-06 36.6 5.8 67 14-112 7-89 (89)
15 1wo9_A HI-1, trypsin inhibitor 92.4 0.092 3.1E-06 31.4 2.6 29 20-48 5-34 (35)
16 1gl0_I Protease inhibitor LCMI 92.3 0.13 4.5E-06 30.6 3.2 28 89-117 6-34 (35)
17 3tvj_I Protease inhibitor SGPI 89.8 0.23 7.9E-06 30.1 2.6 29 19-47 7-37 (38)
18 1wo9_A HI-1, trypsin inhibitor 89.3 0.2 6.8E-06 29.9 2.0 28 89-117 6-34 (35)
19 3ix0_A Beta-microseminoprotein 89.0 0.42 1.5E-05 35.0 4.0 33 11-43 18-51 (94)
20 3ejh_A Fibronectin; fibronecti 88.6 0.67 2.3E-05 33.7 4.8 34 78-112 2-42 (93)
21 1xhh_A Beta-microseminoprotein 88.0 0.46 1.6E-05 34.6 3.6 34 11-44 15-49 (91)
22 1o9a_A Fibronectin; cell adhes 81.9 1 3.5E-05 32.8 3.0 34 78-112 4-42 (93)
23 2lk9_A Bone marrow stromal ant 81.7 1.1 3.6E-05 26.3 2.4 19 246-264 12-30 (35)
24 3tvj_I Protease inhibitor SGPI 80.0 1 3.4E-05 27.3 2.0 28 88-116 8-37 (38)
25 3m7p_A FN1 protein; fibronecti 73.9 1.4 4.8E-05 39.1 2.1 72 12-114 222-307 (308)
26 2ks1_B Epidermal growth factor 72.8 6.4 0.00022 24.5 4.4 25 240-264 13-37 (44)
27 2ec3_A Fibronectin; complement 69.7 4 0.00014 27.7 3.1 36 77-113 18-60 (68)
28 2cg7_A Fibronectin; signaling 68.0 3.8 0.00013 29.6 2.9 33 12-44 49-90 (90)
29 2jwa_A Receptor tyrosine-prote 64.6 5.6 0.00019 24.8 2.8 15 247-261 22-36 (44)
30 2ec3_A Fibronectin; complement 62.7 6.3 0.00022 26.8 3.0 34 11-44 19-60 (68)
31 3arc_T Photosystem II reaction 59.4 8.5 0.00029 22.2 2.7 20 244-263 5-24 (32)
32 2l2t_A Receptor tyrosine-prote 56.2 9.1 0.00031 23.8 2.7 25 240-264 12-36 (44)
33 2l6w_A Beta-type platelet-deri 58.5 2.8 9.6E-05 25.4 0.0 18 246-263 17-34 (39)
34 1iij_A ERBB-2 receptor protein 42.4 6.5 0.00022 23.3 0.4 17 248-264 17-33 (35)
35 3kl4_B DPAP B, YSCV, signal pe 41.1 11 0.00038 22.2 1.3 22 236-258 10-31 (42)
36 1nkz_B Light-harvesting protei 39.3 26 0.00089 21.4 2.8 21 239-259 9-29 (41)
37 3j1r_A Archaeal adhesion filam 37.9 30 0.001 18.8 2.6 16 247-262 8-23 (26)
38 1lgh_B LH II, B800/850, light 35.8 31 0.0011 21.5 2.8 21 239-259 14-34 (45)
39 1wrg_A LH-1, light-harvesting 34.2 32 0.0011 22.4 2.8 21 239-259 17-37 (55)
40 1xrd_A LH-1, light-harvesting 33.4 45 0.0015 21.4 3.3 24 237-260 10-33 (52)
41 2l9u_A Receptor tyrosine-prote 27.4 56 0.0019 19.1 2.7 13 246-258 8-20 (40)
42 1dx7_A Light-harvesting protei 26.3 31 0.0011 21.8 1.7 21 239-259 17-37 (48)
43 2j5h_A Teratocarcinoma-derived 23.8 15 0.0005 22.5 -0.2 26 88-114 9-34 (41)
44 1q90_N Cytochrome B6F complex 22.0 89 0.0031 17.7 2.8 18 246-263 11-28 (31)
45 1vf5_H Protein PET N; photosyn 21.4 96 0.0033 17.3 2.8 18 246-263 9-26 (29)
46 2k9y_A Ephrin type-A receptor 20.9 57 0.0019 19.2 2.1 8 254-261 29-36 (41)
No 1
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=99.38 E-value=6.8e-13 Score=95.00 Aligned_cols=58 Identities=33% Similarity=0.879 Sum_probs=54.0
Q ss_pred eecCCCeEeCCCCeee-cCCcceEECCCceEEeeccCCCC-CCCCCCCCCCCCCcCCCCCC
Q psy10995 11 CQDEDGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTL-SCQHPIPANSTQCCPYCPDA 69 (265)
Q Consensus 11 cc~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~~~Cp~~-~C~~~~~~~~g~CCp~C~~~ 69 (265)
.|.++|+.|.+|++|+ ++|++|+|++|.+.|.++.||++ +|+++.. .+|+|||+|++.
T Consensus 9 ~C~~~G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~-~~GeCCPvC~~~ 68 (73)
T 1u5m_A 9 SCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEI-PFGECCPICPAD 68 (73)
T ss_dssp CEESSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCC-CSSCSCCSCCSS
T ss_pred CeeECCEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcc-cCCCcCCCCCCc
Confidence 4679999999999999 67999999999999999999998 9999987 899999999874
No 2
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=99.36 E-value=1.5e-12 Score=93.15 Aligned_cols=61 Identities=33% Similarity=0.836 Sum_probs=56.5
Q ss_pred CccccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCCCC-CCCCCCCCCCCCCccccccc
Q psy10995 76 AAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAA-ACSNPRPPEPGTCCPRCAGA 138 (265)
Q Consensus 76 ~~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp~~-~C~~~~~~~~g~CCp~C~~~ 138 (265)
...|. ++|++|.+|++|++++|++|+|.+|.+.|..+.|+.+ .|+++.. .+|+|||+|+..
T Consensus 7 ~~~C~-~~G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~-~~GeCCPvC~~~ 68 (73)
T 1u5m_A 7 AGSCV-QDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEI-PFGECCPICPAD 68 (73)
T ss_dssp CSCEE-SSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCC-CSSCSCCSCCSS
T ss_pred CCCee-ECCEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcc-cCCCcCCCCCCc
Confidence 35798 8999999999999999999999999999999999998 9999876 899999999864
No 3
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=99.02 E-value=2.8e-10 Score=79.74 Aligned_cols=56 Identities=21% Similarity=0.618 Sum_probs=49.0
Q ss_pred ecCCCeEeCCCCeeecCCcceEECCCceEEeeccCCCCC--CCCCCCCCCCCCcCCCCC
Q psy10995 12 QDEDGVWRDDSEIWRDGCRECHCIDGREMCTLIACPTLS--CQHPIPANSTQCCPYCPD 68 (265)
Q Consensus 12 c~~~G~~y~~Ge~w~~~C~~C~C~~G~v~C~~~~Cp~~~--C~~~~~~~~g~CCp~C~~ 68 (265)
|.+||+.|.++..+.++|+.|+|++|.|.|.++.||+++ |.+++. .+|+|||+|.+
T Consensus 10 C~~eGe~~~~~~~~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~-~~g~CCp~C~~ 67 (67)
T 3bk3_C 10 CENEGEVLHIPNITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVK-QTGACCEKCKG 67 (67)
T ss_dssp CSSTTCEECCTTTTTSTTEEEEECSSBEEEEECCCCCCCTTCCCEEC-CTTCSSCEECC
T ss_pred eEECCEEEeCCCccCCCcceeEecCCceEEccccCCCCccccCCccc-CCCCcCcCcCc
Confidence 779999998775334899999999999999999999998 998776 79999999863
No 4
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=98.90 E-value=1.1e-09 Score=76.69 Aligned_cols=57 Identities=33% Similarity=0.760 Sum_probs=50.5
Q ss_pred ccccccCCeEEcCCcEEccCCCccceecCCeEEEeecCCCCCC--CCCCCCCCCCCCccccc
Q psy10995 77 AVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAA--CSNPRPPEPGTCCPRCA 136 (265)
Q Consensus 77 ~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~~Cp~~~--C~~~~~~~~g~CCp~C~ 136 (265)
..|. ++|+.|.++. |..++|+.|+|.+|.+.|.++.||+++ |..+.+ .+|+|||+|.
T Consensus 8 ~~C~-~eGe~~~~~~-~~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~-~~g~CCp~C~ 66 (67)
T 3bk3_C 8 ASCE-NEGEVLHIPN-ITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVK-QTGACCEKCK 66 (67)
T ss_dssp CBCS-STTCEECCTT-TTTSTTEEEEECSSBEEEEECCCCCCCTTCCCEEC-CTTCSSCEEC
T ss_pred CceE-ECCEEEeCCC-ccCCCcceeEecCCceEEccccCCCCccccCCccc-CCCCcCcCcC
Confidence 4687 8999998764 777999999999999999999999998 998765 7999999985
No 5
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=95.93 E-value=0.0074 Score=36.49 Aligned_cols=29 Identities=31% Similarity=0.837 Sum_probs=26.5
Q ss_pred CCCCeeecCCcceEEC-CCceEEeeccCCC
Q psy10995 20 DDSEIWRDGCRECHCI-DGREMCTLIACPT 48 (265)
Q Consensus 20 ~~Ge~w~~~C~~C~C~-~G~v~C~~~~Cp~ 48 (265)
..|++|.++|.+|+|. +|...|+++.||+
T Consensus 5 ~pG~~~~~dCNtC~C~~~G~W~CT~~~Cp~ 34 (36)
T 2xtt_A 5 EPGQTKKQDCNTCRCGSDGVWACTRMGCPP 34 (36)
T ss_dssp CTTCEEEETTEEEEECTTSCEEEECCCCCC
T ss_pred CCCCEEECCCCccCCCCCCEEeeeCCcCCC
Confidence 4689999999999999 9999999999985
No 6
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*
Probab=95.74 E-value=0.02 Score=41.80 Aligned_cols=72 Identities=24% Similarity=0.479 Sum_probs=52.8
Q ss_pred eecCCCeEeCCCCeee----cC-CcceEEC---CCceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccc-
Q psy10995 11 CQDEDGVWRDDSEIWR----DG-CRECHCI---DGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMD- 81 (265)
Q Consensus 11 cc~~~G~~y~~Ge~w~----~~-C~~C~C~---~G~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~- 81 (265)
-|..||+.|+-|++|. .. =..|||. +|...|.... . |.+
T Consensus 2 ~C~~~g~~Y~VG~~w~k~~e~G~mm~CTC~G~GrG~wkC~~~d-------------------~-------------C~D~ 49 (93)
T 3ejh_A 2 QCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVD-------------------Q-------------CQDS 49 (93)
T ss_dssp EEEETTEEEETTEEEEEECTTSCEEEEEEEETTTTEEEEEECS-------------------E-------------EECT
T ss_pred ccEECCcEEecCCEEEecccCCCEEEeEEcCCCcccEEecCCc-------------------c-------------CCcc
Confidence 4788999999999997 22 3469997 3678887630 1 332
Q ss_pred cCCeEEcCCcEEcc---CCCccceec---CCeEEEeecC
Q psy10995 82 FHGELKLEGQHWTL---NPCTDCTCR---EGKVLCYSQQ 114 (265)
Q Consensus 82 ~~g~~y~~Ge~w~~---~~C~~C~C~---~g~v~C~~~~ 114 (265)
.+|+.|..|++|.. ..=..|+|. .|++.|.++.
T Consensus 50 ~~g~~Y~IGetW~k~~~G~~~~CtC~G~G~G~w~Cep~~ 88 (93)
T 3ejh_A 50 ETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPLQ 88 (93)
T ss_dssp TTCCEEETTCEEEECCTTCCEEEEEEETTTTEEEEEECC
T ss_pred CCCcEeecCCeEeeccCCeEEEeEEEcCCceeEEecccc
Confidence 47999999999994 234578886 4789999754
No 7
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=95.20 E-value=0.026 Score=33.66 Aligned_cols=29 Identities=28% Similarity=0.756 Sum_probs=25.8
Q ss_pred CCCCeeecCCcceEECC-CceEEeeccCCC
Q psy10995 20 DDSEIWRDGCRECHCID-GREMCTLIACPT 48 (265)
Q Consensus 20 ~~Ge~w~~~C~~C~C~~-G~v~C~~~~Cp~ 48 (265)
..|++|.+.|..|+|.+ |...|..+.|.+
T Consensus 5 ~PG~~~k~~CN~C~C~~~G~~~CTlk~C~P 34 (35)
T 1gl0_I 5 TPGQVKQQDCNTCTCTPTGVWGCTLMGCQP 34 (35)
T ss_dssp CTTCEEECSSCEEEECTTSCEEEECCCCCC
T ss_pred CCCcccccCCCccCCCCCCeEEEEeecccC
Confidence 46899999999999997 999999999974
No 8
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A
Probab=95.16 E-value=0.029 Score=40.99 Aligned_cols=74 Identities=23% Similarity=0.520 Sum_probs=49.5
Q ss_pred eecCCCeEeCCCCeee---cCC-cceEECC-C-ceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccc-cC
Q psy10995 11 CQDEDGVWRDDSEIWR---DGC-RECHCID-G-REMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMD-FH 83 (265)
Q Consensus 11 cc~~~G~~y~~Ge~w~---~~C-~~C~C~~-G-~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~-~~ 83 (265)
.|..+|+.|+.|++|. ... ..|+|.. | ...|... |. .++ .|.| ++
T Consensus 4 ~C~d~G~~Y~iGeqWer~~~G~~l~CTC~G~g~G~~C~sk---------P~---aee----------------~C~Dk~~ 55 (93)
T 1o9a_A 4 GCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK---------PE---AEE----------------TCFDKYT 55 (93)
T ss_dssp SCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC---------CC---SSC----------------EEEETTT
T ss_pred eEEcCCeEeecCCEEeeccCCCEEEEEEcCCCcceEecCC---------CC---ccc----------------ccccCCC
Confidence 4778999999999998 333 4699974 3 2667641 11 111 3543 47
Q ss_pred CeEEcCCcEEcc--CC-Cccceec---CCeEEEee
Q psy10995 84 GELKLEGQHWTL--NP-CTDCTCR---EGKVLCYS 112 (265)
Q Consensus 84 g~~y~~Ge~w~~--~~-C~~C~C~---~g~v~C~~ 112 (265)
|+.|..||+|.. +. =..|+|. +|.+.|..
T Consensus 56 G~~Y~VGetwer~~~g~~~~CtC~G~G~G~~~Ct~ 90 (93)
T 1o9a_A 56 GNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTI 90 (93)
T ss_dssp TEEEETTCBCCEEETTEEECCEECCTTTCCEECBB
T ss_pred ccEeecCCeEEeccCCeEEEEEEeCCCceEEEEEe
Confidence 999999999983 22 2367886 47788864
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=94.94 E-value=0.032 Score=33.15 Aligned_cols=25 Identities=32% Similarity=0.572 Sum_probs=21.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhh
Q psy10995 238 RQIRESLYILLIVLFAVSTLFAFYA 262 (265)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (265)
+--|-|||++|+.||.+.+||--|.
T Consensus 11 ELNRTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhhhhc
Confidence 3346899999999999999998774
No 10
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=94.75 E-value=0.023 Score=34.29 Aligned_cols=28 Identities=32% Similarity=0.827 Sum_probs=24.6
Q ss_pred CCcEEccCCCccceec-CCeEEEeecCCCC
Q psy10995 89 EGQHWTLNPCTDCTCR-EGKVLCYSQQCPA 117 (265)
Q Consensus 89 ~Ge~w~~~~C~~C~C~-~g~v~C~~~~Cp~ 117 (265)
+|++|. +.|.+|+|. +|.+.|.++.||.
T Consensus 6 pG~~~~-~dCNtC~C~~~G~W~CT~~~Cp~ 34 (36)
T 2xtt_A 6 PGQTKK-QDCNTCRCGSDGVWACTRMGCPP 34 (36)
T ss_dssp TTCEEE-ETTEEEEECTTSCEEEECCCCCC
T ss_pred CCCEEE-CCCCccCCCCCCEEeeeCCcCCC
Confidence 577888 479999999 9999999999984
No 11
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=94.37 E-value=0.034 Score=40.99 Aligned_cols=37 Identities=30% Similarity=0.790 Sum_probs=31.9
Q ss_pred ccccccCCeEEcCCcEEccCCCccceecCCeEEEeec
Q psy10995 77 AVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQ 113 (265)
Q Consensus 77 ~~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~~ 113 (265)
.+|.|.+|+.|.-|++|..+.|..|+|.+..+.|-..
T Consensus 16 ~~C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~~ 52 (94)
T 3ix0_A 16 RKCMDLKGNKHPINSEWQTDNCETCTCYETEISCCTL 52 (94)
T ss_dssp -CEECTTSCEECTTCEEECTTSEEEEECSSEEEEEEC
T ss_pred CcCCCCCCCEEeCCCEECCCCCcEeEecCCCceeccC
Confidence 5798889999999999999999999998777777643
No 12
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=93.98 E-value=0.045 Score=39.97 Aligned_cols=35 Identities=26% Similarity=0.749 Sum_probs=31.8
Q ss_pred cccccCCeEEcCCcEEccCCCccceecCCeEEEee
Q psy10995 78 VCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYS 112 (265)
Q Consensus 78 ~C~~~~g~~y~~Ge~w~~~~C~~C~C~~g~v~C~~ 112 (265)
.|.|.+|+.|.-|++|..+.|..|+|.+..+.|-.
T Consensus 14 ~C~D~~G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~ 48 (91)
T 1xhh_A 14 ECQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCN 48 (91)
T ss_dssp EEEETTTEEEECCCCEECSSSEEEEECSSEEEEEE
T ss_pred CCCcCCCcEEeCCCeECCCCceEeEecCCCcEeec
Confidence 58888999999999999999999999988888775
No 13
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=93.87 E-value=0.11 Score=37.89 Aligned_cols=67 Identities=25% Similarity=0.531 Sum_probs=49.1
Q ss_pred CCCeEeCCCCeee---cC-CcceEECC---CceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccccCCeE
Q psy10995 14 EDGVWRDDSEIWR---DG-CRECHCID---GREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGEL 86 (265)
Q Consensus 14 ~~G~~y~~Ge~w~---~~-C~~C~C~~---G~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~~~g~~ 86 (265)
++|..|+-|++|. +. =..|+|.. |.+.|... .-|. .+|+.
T Consensus 9 ~tg~sY~VGe~Wer~~~~~~~~CtC~G~G~G~~~C~s~--------------------------------~~C~-~~g~~ 55 (90)
T 2cg7_A 9 YTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIA--------------------------------NRCH-EGGQS 55 (90)
T ss_dssp TTCCEEETTCEEEEEETTEEEEEEEEETTTTEEEEECT--------------------------------TEEE-ETTEE
T ss_pred CCCeEeecCCeeeEccCCcEEEEEEecCCCceEEECCc--------------------------------ceee-eCCcE
Confidence 5799999999997 33 23488874 77777721 0365 68999
Q ss_pred EcCCcEEccC-----CCccceec---CCeEEEeec
Q psy10995 87 KLEGQHWTLN-----PCTDCTCR---EGKVLCYSQ 113 (265)
Q Consensus 87 y~~Ge~w~~~-----~C~~C~C~---~g~v~C~~~ 113 (265)
|+.|++|... .=..|+|. .|++.|.++
T Consensus 56 Y~IGetW~k~~~~~~~~~~CtClGngkGew~C~p~ 90 (90)
T 2cg7_A 56 YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI 90 (90)
T ss_dssp EETTCEEEEECTTSSSEEEEEEEETTTTEEEEEEC
T ss_pred EecCceEeeccccCCceEEEEEeCCCcccEEeeeC
Confidence 9999999952 14589997 477999863
No 14
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A
Probab=93.42 E-value=0.18 Score=36.57 Aligned_cols=67 Identities=27% Similarity=0.572 Sum_probs=46.5
Q ss_pred CCCeEeCCCCeee---cC-C-cceEEC---CCceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccc-cCC
Q psy10995 14 EDGVWRDDSEIWR---DG-C-RECHCI---DGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMD-FHG 84 (265)
Q Consensus 14 ~~G~~y~~Ge~w~---~~-C-~~C~C~---~G~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~-~~g 84 (265)
.+|..|+.|++|. +. . ..|+|. .|.+.|... + .|.+ ..|
T Consensus 7 ~~g~~Y~VGe~wer~~~~g~~~~CTC~G~G~G~~~C~s~---------------~-----------------~C~D~~tG 54 (89)
T 2rl0_A 7 AAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITCTSR---------------N-----------------RCNDQDTR 54 (89)
T ss_dssp TTTEEEETTCEEEEEETTTEEEEEEEEETTTTEEEEECT---------------T-----------------EEEETTTT
T ss_pred CCCcEEecCceeeEccCCCeEEEeEEcCCCcceEEeCCC---------------C-----------------cccccCCc
Confidence 4599999999998 23 4 359997 266766632 0 2432 249
Q ss_pred eEEcCCcEEccC----CCccceec---CCeEEEee
Q psy10995 85 ELKLEGQHWTLN----PCTDCTCR---EGKVLCYS 112 (265)
Q Consensus 85 ~~y~~Ge~w~~~----~C~~C~C~---~g~v~C~~ 112 (265)
+.|+.|++|... .=..|+|. .|++.|.+
T Consensus 55 ~~Y~iGetW~k~~~~G~~~~C~C~GngrGew~Ce~ 89 (89)
T 2rl0_A 55 TSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCER 89 (89)
T ss_dssp EEEETTCEEEEECSSSCEEEEEEEETTTTEEEEEC
T ss_pred eEEEcCceeecCccCCcEEEEEEeCCCceeEEecC
Confidence 999999999942 24578886 47888864
No 15
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=92.36 E-value=0.092 Score=31.42 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=25.9
Q ss_pred CCCCeeecCCcceEEC-CCceEEeeccCCC
Q psy10995 20 DDSEIWRDGCRECHCI-DGREMCTLIACPT 48 (265)
Q Consensus 20 ~~Ge~w~~~C~~C~C~-~G~v~C~~~~Cp~ 48 (265)
..|++++.+|.+|+|. +|...|....|+.
T Consensus 5 ~pG~ti~~dCNtCtC~~~g~W~CT~~~C~~ 34 (35)
T 1wo9_A 5 TPGQTKKQDCNTCTCTPTGIWGCTRKACRT 34 (35)
T ss_dssp CTTCEEEETTEEEEECTTSCEECCCSSSSC
T ss_pred CCCCEEECCCCceECCCCCEEcCCCCCCCC
Confidence 4688999999999999 9999999998873
No 16
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=92.32 E-value=0.13 Score=30.56 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=24.3
Q ss_pred CCcEEccCCCccceecC-CeEEEeecCCCC
Q psy10995 89 EGQHWTLNPCTDCTCRE-GKVLCYSQQCPA 117 (265)
Q Consensus 89 ~Ge~w~~~~C~~C~C~~-g~v~C~~~~Cp~ 117 (265)
+|++|. +.|..|+|.+ |...|.++.|.+
T Consensus 6 PG~~~k-~~CN~C~C~~~G~~~CTlk~C~P 34 (35)
T 1gl0_I 6 PGQVKQ-QDCNTCTCTPTGVWGCTLMGCQP 34 (35)
T ss_dssp TTCEEE-CSSCEEEECTTSCEEEECCCCCC
T ss_pred CCcccc-cCCCccCCCCCCeEEEEeecccC
Confidence 588888 6899999986 899999998864
No 17
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=89.80 E-value=0.23 Score=30.09 Aligned_cols=29 Identities=28% Similarity=0.842 Sum_probs=24.4
Q ss_pred eCCCCeeecCCcceEECC-Cc-eEEeeccCC
Q psy10995 19 RDDSEIWRDGCRECHCID-GR-EMCTLIACP 47 (265)
Q Consensus 19 y~~Ge~w~~~C~~C~C~~-G~-v~C~~~~Cp 47 (265)
=..|++|.+.|.+|+|.. |. ..|..+.||
T Consensus 7 C~Pg~tFk~~CNtC~C~~dG~~a~CT~k~Cp 37 (38)
T 3tvj_I 7 CEPGTTFKDKCNTCRCGSDGKSAVCTKLWCN 37 (38)
T ss_dssp CCTTCEEEETTEEEEECTTSSCEEEECCEEC
T ss_pred cCCCCeeeccCceeECCCCCceeEeecccCC
Confidence 456899999999999984 65 589999887
No 18
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=89.28 E-value=0.2 Score=29.93 Aligned_cols=28 Identities=32% Similarity=0.735 Sum_probs=24.0
Q ss_pred CCcEEccCCCccceec-CCeEEEeecCCCC
Q psy10995 89 EGQHWTLNPCTDCTCR-EGKVLCYSQQCPA 117 (265)
Q Consensus 89 ~Ge~w~~~~C~~C~C~-~g~v~C~~~~Cp~ 117 (265)
+|+++. .+|.+|+|. +|.+.|....|+.
T Consensus 6 pG~ti~-~dCNtCtC~~~g~W~CT~~~C~~ 34 (35)
T 1wo9_A 6 PGQTKK-QDCNTCTCTPTGIWGCTRKACRT 34 (35)
T ss_dssp TTCEEE-ETTEEEEECTTSCEECCCSSSSC
T ss_pred CCCEEE-CCCCceECCCCCEEcCCCCCCCC
Confidence 577787 489999999 9999999988874
No 19
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=88.95 E-value=0.42 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.712 Sum_probs=28.0
Q ss_pred eecCCCeEeCCCCeee-cCCcceEECCCceEEee
Q psy10995 11 CQDEDGVWRDDSEIWR-DGCRECHCIDGREMCTL 43 (265)
Q Consensus 11 cc~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~ 43 (265)
|-..+|+.|.-|+.|. +.|..|+|.+..+.|-.
T Consensus 18 C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~ 51 (94)
T 3ix0_A 18 CMDLKGNKHPINSEWQTDNCETCTCYETEISCCT 51 (94)
T ss_dssp EECTTSCEECTTCEEECTTSEEEEECSSEEEEEE
T ss_pred CCCCCCCEEeCCCEECCCCCcEeEecCCCceecc
Confidence 4457999999999999 89999999977676654
No 20
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*
Probab=88.57 E-value=0.67 Score=33.71 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=26.2
Q ss_pred cccccCCeEEcCCcEEcc----CCCccceec---CCeEEEee
Q psy10995 78 VCMDFHGELKLEGQHWTL----NPCTDCTCR---EGKVLCYS 112 (265)
Q Consensus 78 ~C~~~~g~~y~~Ge~w~~----~~C~~C~C~---~g~v~C~~ 112 (265)
.|+ .+|+.|..|++|.. ..=..|+|. .|++.|..
T Consensus 2 ~C~-~~g~~Y~VG~~w~k~~e~G~mm~CTC~G~GrG~wkC~~ 42 (93)
T 3ejh_A 2 QCI-VDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDP 42 (93)
T ss_dssp EEE-ETTEEEETTEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred ccE-ECCcEEecCCEEEecccCCCEEEeEEcCCCcccEEecC
Confidence 477 78999999999984 234578887 36788875
No 21
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=88.00 E-value=0.46 Score=34.60 Aligned_cols=34 Identities=32% Similarity=0.768 Sum_probs=29.0
Q ss_pred eecCCCeEeCCCCeee-cCCcceEECCCceEEeec
Q psy10995 11 CQDEDGVWRDDSEIWR-DGCRECHCIDGREMCTLI 44 (265)
Q Consensus 11 cc~~~G~~y~~Ge~w~-~~C~~C~C~~G~v~C~~~ 44 (265)
|...+|+.+.-|+.|. ++|..|+|.+..+.|-..
T Consensus 15 C~D~~G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~~ 49 (91)
T 1xhh_A 15 CQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCNT 49 (91)
T ss_dssp EEETTTEEEECCCCEECSSSEEEEECSSEEEEEEC
T ss_pred CCcCCCcEEeCCCeECCCCceEeEecCCCcEeecC
Confidence 3349999999999999 899999999888777653
No 22
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A
Probab=81.95 E-value=1 Score=32.76 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=24.0
Q ss_pred cccccCCeEEcCCcEEcc---CCCccceecC-C-eEEEee
Q psy10995 78 VCMDFHGELKLEGQHWTL---NPCTDCTCRE-G-KVLCYS 112 (265)
Q Consensus 78 ~C~~~~g~~y~~Ge~w~~---~~C~~C~C~~-g-~v~C~~ 112 (265)
.|. .+|+.|..|++|.. ..=..|+|.. + .+.|..
T Consensus 4 ~C~-d~G~~Y~iGeqWer~~~G~~l~CTC~G~g~G~~C~s 42 (93)
T 1o9a_A 4 GCY-DNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES 42 (93)
T ss_dssp SCB-CSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEE
T ss_pred eEE-cCCeEeecCCEEeeccCCCEEEEEEcCCCcceEecC
Confidence 687 78999999999984 2334688863 2 266653
No 23
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=81.74 E-value=1.1 Score=26.28 Aligned_cols=19 Identities=5% Similarity=0.457 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q psy10995 246 ILLIVLFAVSTLFAFYACR 264 (265)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~ 264 (265)
++|+||+++.|++.+|.-|
T Consensus 12 l~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 12 LVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcchheEEeee
Confidence 5678888999999998654
No 24
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=79.96 E-value=1 Score=27.27 Aligned_cols=28 Identities=29% Similarity=0.833 Sum_probs=22.6
Q ss_pred cCCcEEccCCCccceecC-Ce-EEEeecCCC
Q psy10995 88 LEGQHWTLNPCTDCTCRE-GK-VLCYSQQCP 116 (265)
Q Consensus 88 ~~Ge~w~~~~C~~C~C~~-g~-v~C~~~~Cp 116 (265)
.+|++|. +.|.+|+|.. |. ..|..+.||
T Consensus 8 ~Pg~tFk-~~CNtC~C~~dG~~a~CT~k~Cp 37 (38)
T 3tvj_I 8 EPGTTFK-DKCNTCRCGSDGKSAVCTKLWCN 37 (38)
T ss_dssp CTTCEEE-ETTEEEEECTTSSCEEEECCEEC
T ss_pred CCCCeee-ccCceeECCCCCceeEeecccCC
Confidence 3688888 5899999984 65 589988887
No 25
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein, zinc BIN dimer, conformational change, cell adhesion; HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A* 1e8b_A* 1qo6_A 2fn2_A*
Probab=73.86 E-value=1.4 Score=39.11 Aligned_cols=72 Identities=22% Similarity=0.435 Sum_probs=0.0
Q ss_pred ecCCCeEeCCCCeee-----cCCcceEEC---CCceEEeeccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCccccccC
Q psy10995 12 QDEDGVWRDDSEIWR-----DGCRECHCI---DGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFH 83 (265)
Q Consensus 12 c~~~G~~y~~Ge~w~-----~~C~~C~C~---~G~v~C~~~~Cp~~~C~~~~~~~~g~CCp~C~~~~~~~~~~~~C~~~~ 83 (265)
|+.+|+.|+-|++|. -.=..|+|. .|...|.+. -.|..+ .+
T Consensus 222 C~~~g~~y~vg~~w~k~~e~G~~~~CtC~G~G~G~w~C~~~----d~C~~~---------------------------~~ 270 (308)
T 3m7p_A 222 CIVDDITYNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPV----DQCQDS---------------------------ET 270 (308)
T ss_dssp EEEEEEEEECCCSSCCCEEEEEEEEEEC-------CEEECB----CEEECT---------------------------TT
T ss_pred EEeCCeEEEcCceeeccccCCceEEEEEeCCCccCEEeecc----hhhccC---------------------------CC
Q ss_pred CeEEcCCcEEcc---CCCccceec---CCeEEEeecC
Q psy10995 84 GELKLEGQHWTL---NPCTDCTCR---EGKVLCYSQQ 114 (265)
Q Consensus 84 g~~y~~Ge~w~~---~~C~~C~C~---~g~v~C~~~~ 114 (265)
|+.|..||+|.. ..=..|+|- .|++.|..++
T Consensus 271 ~~~y~vg~~w~k~~~g~~~~c~c~g~g~g~~~c~~~~ 307 (308)
T 3m7p_A 271 GTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPLQ 307 (308)
T ss_dssp CCEEETTCEEEEEETTEEEEEEEEETTBTEEEEEECC
T ss_pred CcEEEcCCcccccccceEEEeEecCCCccceeecccc
No 26
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=72.76 E-value=6.4 Score=24.53 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=12.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhc
Q psy10995 240 IRESLYILLIVLFAVSTLFAFYACR 264 (265)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (265)
|-...-..|++++++..+++||.+|
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhh
Confidence 3334433344545555555566554
No 27
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.65 E-value=4 Score=27.72 Aligned_cols=36 Identities=25% Similarity=0.549 Sum_probs=28.4
Q ss_pred ccccccCCeEEcCCcEEcc----CCCccceec---CCeEEEeec
Q psy10995 77 AVCMDFHGELKLEGQHWTL----NPCTDCTCR---EGKVLCYSQ 113 (265)
Q Consensus 77 ~~C~~~~g~~y~~Ge~w~~----~~C~~C~C~---~g~v~C~~~ 113 (265)
..|. .+|+.|+.|++|.. ..=..|+|. .|++.|...
T Consensus 18 ~~C~-d~G~~YrIGe~W~r~~e~G~mm~CtClGnGrGe~~C~~~ 60 (68)
T 2ec3_A 18 RWCH-DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH 60 (68)
T ss_dssp SCBC-SSSCCBCTTCEEEEECSSSSEEEEEEEETTTTEEEEEEC
T ss_pred Ccee-cCCeeEEcCceEeecccCCCEEEEEEecCCcccEEeeCc
Confidence 4687 68999999999984 224579997 478999975
No 28
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=68.00 E-value=3.8 Score=29.60 Aligned_cols=33 Identities=33% Similarity=0.666 Sum_probs=25.7
Q ss_pred ecCCCeEeCCCCeee-c---C--CcceEEC---CCceEEeec
Q psy10995 12 QDEDGVWRDDSEIWR-D---G--CRECHCI---DGREMCTLI 44 (265)
Q Consensus 12 c~~~G~~y~~Ge~w~-~---~--C~~C~C~---~G~v~C~~~ 44 (265)
|..+|+.|+-|++|. + . =..|+|. .|.+.|.++
T Consensus 49 C~~~g~~Y~IGetW~k~~~~~~~~~~CtClGngkGew~C~p~ 90 (90)
T 2cg7_A 49 CHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI 90 (90)
T ss_dssp EEETTEEEETTCEEEEECTTSSSEEEEEEEETTTTEEEEEEC
T ss_pred eeeCCcEEecCceEeeccccCCceEEEEEeCCCcccEEeeeC
Confidence 568899999999998 2 1 3479998 366999874
No 29
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.64 E-value=5.6 Score=24.79 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHh
Q psy10995 247 LLIVLFAVSTLFAFY 261 (265)
Q Consensus 247 ~~~~~~~~~~~~~~~ 261 (265)
+|+||.+++++|++=
T Consensus 22 ll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 22 LLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhee
Confidence 455555555444443
No 30
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.68 E-value=6.3 Score=26.77 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=26.5
Q ss_pred eecCCCeEeCCCCeee---c--CCcceEEC---CCceEEeec
Q psy10995 11 CQDEDGVWRDDSEIWR---D--GCRECHCI---DGREMCTLI 44 (265)
Q Consensus 11 cc~~~G~~y~~Ge~w~---~--~C~~C~C~---~G~v~C~~~ 44 (265)
-|..+|+.|+-|++|. + .=..|+|. .|...|.+.
T Consensus 19 ~C~d~G~~YrIGe~W~r~~e~G~mm~CtClGnGrGe~~C~~~ 60 (68)
T 2ec3_A 19 WCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH 60 (68)
T ss_dssp CBCSSSCCBCTTCEEEEECSSSSEEEEEEEETTTTEEEEEEC
T ss_pred ceecCCeeEEcCceEeecccCCCEEEEEEecCCcccEEeeCc
Confidence 4677999999999997 2 23469998 367889875
No 31
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=59.36 E-value=8.5 Score=22.21 Aligned_cols=20 Identities=15% Similarity=0.384 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q psy10995 244 LYILLIVLFAVSTLFAFYAC 263 (265)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ 263 (265)
.|++|++..+.+.+||+.-+
T Consensus 5 vYt~ll~~tlgiiFFAI~FR 24 (32)
T 3arc_T 5 TYVFIFACIIALFFFAIFFR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 57888888888888888654
No 32
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.24 E-value=9.1 Score=23.83 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhc
Q psy10995 240 IRESLYILLIVLFAVSTLFAFYACR 264 (265)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (265)
|-...--.|++++++..+++||.+|
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhh
Confidence 4444433455555555555666554
No 33
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=58.47 E-value=2.8 Score=25.36 Aligned_cols=18 Identities=6% Similarity=0.388 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy10995 246 ILLIVLFAVSTLFAFYAC 263 (265)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~ 263 (265)
++++++.++++|+.+|+-
T Consensus 17 l~vi~iisLIiLi~~w~q 34 (39)
T 2l6w_A 17 LVVLTIISLIILIMLWQK 34 (39)
Confidence 455666777777777753
No 34
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=42.42 E-value=6.5 Score=23.28 Aligned_cols=17 Identities=6% Similarity=0.294 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy10995 248 LIVLFAVSTLFAFYACR 264 (265)
Q Consensus 248 ~~~~~~~~~~~~~~~~~ 264 (265)
|++++.+.+.++||-+|
T Consensus 17 lll~vii~l~~~~~iRR 33 (35)
T 1iij_A 17 VLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHhheEEee
Confidence 33344444445556555
No 35
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=41.07 E-value=11 Score=22.18 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=16.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHH
Q psy10995 236 TNRQIRESLYILLIVLFAVSTLF 258 (265)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~ 258 (265)
.+.-||+.+ ||++.||.-+.|+
T Consensus 10 gsklirvgi-ilvlliwgtvlll 31 (42)
T 3kl4_B 10 GSKLIRVGI-ILVLLIWGTVLLL 31 (42)
T ss_pred ccceEEeee-ehhHHHHHHHHHh
Confidence 345588888 7888888876654
No 36
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=39.30 E-value=26 Score=21.38 Aligned_cols=21 Identities=19% Similarity=-0.021 Sum_probs=13.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy10995 239 QIRESLYILLIVLFAVSTLFA 259 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (265)
|=-|++|+..+++|..++++|
T Consensus 9 ~EfH~~~~~~~~~F~~iA~vA 29 (41)
T 1nkz_B 9 EELHKYVIDGTRVFLGLALVA 29 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345788887777776666543
No 37
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=37.94 E-value=30 Score=18.78 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10995 247 LLIVLFAVSTLFAFYA 262 (265)
Q Consensus 247 ~~~~~~~~~~~~~~~~ 262 (265)
+|+++.|+.+-.++|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555553
No 38
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=35.80 E-value=31 Score=21.47 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy10995 239 QIRESLYILLIVLFAVSTLFA 259 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (265)
|=-|++|+..+++|..++++|
T Consensus 14 ~EfH~~~~~~~~~F~~iA~vA 34 (45)
T 1lgh_B 14 IAVHDQFKTTFSAFIILAAVA 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345888888777776666544
No 39
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=34.18 E-value=32 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy10995 239 QIRESLYILLIVLFAVSTLFA 259 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (265)
|--|++|+..+++|.++++++
T Consensus 17 qEfH~~f~~~~~~F~~iAvvA 37 (55)
T 1wrg_A 17 KEFHKIFTSSILVFFGVAAFA 37 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345788887777666665543
No 40
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=33.37 E-value=45 Score=21.39 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=18.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Q psy10995 237 NRQIRESLYILLIVLFAVSTLFAF 260 (265)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~ 260 (265)
+|.+...+.++|+|+++++=|+++
T Consensus 10 Prr~Lva~~~fl~vlAl~IHfilL 33 (52)
T 1xrd_A 10 PRQALVGLATFLFVLALLIHFILL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888888888888877765
No 41
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=27.38 E-value=56 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy10995 246 ILLIVLFAVSTLF 258 (265)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (265)
+.|-+|+.++|+|
T Consensus 8 malt~i~gl~vif 20 (40)
T 2l9u_A 8 MALTVIAGLVVIF 20 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 42
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=26.31 E-value=31 Score=21.76 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy10995 239 QIRESLYILLIVLFAVSTLFA 259 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (265)
|=-|++|+..+++|..++++|
T Consensus 17 ~EfH~~~~~~~~~F~~iA~vA 37 (48)
T 1dx7_A 17 QELHSVYMSGLWLFSAVAIVA 37 (48)
T ss_dssp HHHTHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345888887777766555543
No 43
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=23.84 E-value=15 Score=22.45 Aligned_cols=26 Identities=35% Similarity=0.961 Sum_probs=20.8
Q ss_pred cCCcEEccCCCccceecCCeEEEeecC
Q psy10995 88 LEGQHWTLNPCTDCTCREGKVLCYSQQ 114 (265)
Q Consensus 88 ~~Ge~w~~~~C~~C~C~~g~v~C~~~~ 114 (265)
.+|+ |....|..|.|..|...|.+++
T Consensus 9 ~Hg~-W~~k~C~LCRC~~G~LhCfp~~ 34 (41)
T 2j5h_A 9 LHGT-WLPKKCSLCRCWHGQLHCLPQT 34 (41)
T ss_dssp CCTT-CSSCCCCCCCCCSSSCCSCCSS
T ss_pred cCCC-eeecCceEEEeecCceEEcccc
Confidence 3444 8888999999999998888653
No 44
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=22.05 E-value=89 Score=17.71 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy10995 246 ILLIVLFAVSTLFAFYAC 263 (265)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~ 263 (265)
..|.|+|.||.-+..+.+
T Consensus 11 aalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 11 AATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhheeeEEEEEec
Confidence 567888888887776654
No 45
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=21.36 E-value=96 Score=17.30 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy10995 246 ILLIVLFAVSTLFAFYAC 263 (265)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~ 263 (265)
..|.|+|.||.-+..+.+
T Consensus 9 aalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 9 VALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhheeeeEEEEec
Confidence 567888888877766543
No 46
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=20.85 E-value=57 Score=19.22 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q psy10995 254 VSTLFAFY 261 (265)
Q Consensus 254 ~~~~~~~~ 261 (265)
++++++|+
T Consensus 29 iv~~~~~~ 36 (41)
T 2k9y_A 29 LAGVGFFI 36 (41)
T ss_dssp HHHHHHSS
T ss_pred HHHHheeE
Confidence 33333333
Done!