RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10995
(265 letters)
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
SUB-domain architecture, beta-sheet, structural protein;
NMR {Homo sapiens} SCOP: g.27.1.2
Length = 73
Score = 48.0 bits (114), Expect = 5e-08
Identities = 17/61 (27%), Positives = 20/61 (32%)
Query: 75 EAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPR 134
+ A G+ + W PC C C G VLC C G CCP
Sbjct: 5 QEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPI 64
Query: 135 C 135
C
Sbjct: 65 C 65
Score = 40.3 bits (94), Expect = 3e-05
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 15 DGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTLS-CQHPIPANSTQCCPYCPDATSS 72
DG +D ++W+ + CR C C G +C I C + C P +CCP CP ++
Sbjct: 13 DGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFG-ECCPICPADLAA 71
Score = 26.1 bits (57), Expect = 3.2
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 179 NGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMC 212
+G + D + +PC C C G C +C
Sbjct: 13 DGQRYNDKDVWKPEPCRICVCDT-GTVLCDDIIC 45
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta
superfamily, BMP modulator proteins, chordin, BMP
inhibitor, chondrogenesis; 2.70A {Danio rerio}
Length = 67
Score = 36.6 bits (84), Expect = 6e-04
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 88 LEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRP-PEPGTCCPRCAG 137
L + T NPC C C K C ++C A + G CC +C G
Sbjct: 17 LHIPNITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKCKG 67
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative
splicing, disulfide bond, polymorphism, secreted,
protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Length = 94
Score = 29.3 bits (65), Expect = 0.33
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 63 CPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCTCREGKVLC 110
C + P+ G CMD G W + C CTC E ++ C
Sbjct: 2 CYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETCTCYETEISC 49
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 28.8 bits (65), Expect = 1.6
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 19 RDDSEIWRDGCRECHCIDGREMCTLIACPTL 49
D +I + C ID + I P
Sbjct: 162 EKDPDIMINDLIACKLIDLVDNLKNIDIPVK 192
>2fgg_A Hypothetical protein RV2632C/MT2708; TB target, structural
genomics, PSI, protein struct initiative, TB structural
genomics consortium; 2.30A {Mycobacterium tuberculosis}
SCOP: d.50.5.1
Length = 101
Score = 26.7 bits (59), Expect = 3.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 157 SLSPSDLEIPRIGDE 171
L P+D + +IGDE
Sbjct: 44 RLDPADEPVAQIGDE 58
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic
secretory protein, solution structure, Na+, K+ ATPase
inhibitor, unknown function; NMR {Sus scrofa} PDB:
2iz4_A
Length = 91
Score = 25.9 bits (56), Expect = 5.6
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 79 CMDFHGELKLEGQHWTLNPCTDCTCREGKVLC 110
C D G W C +CTC + + C
Sbjct: 15 CQDLKGVSHPLNSVWKTKDCEECTCGQDAISC 46
>3bnj_A Cytochrome C-552; C-type cytochrome, nitrite reductase, sulfite
complex, calcium, electron transport, heme, iron,
metal-binding; HET: HEM; 1.30A {Wolinella succinogenes}
PDB: 3bnh_A* 3bng_A* 1fs9_A* 1fs7_A* 1fs8_A* 2e80_A*
2e81_A* 3bnf_A* 1qdb_A*
Length = 485
Score = 27.1 bits (59), Expect = 6.5
Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 22/112 (19%)
Query: 6 CITC------ECQDEDGVWRDDSEIWRD---------GCRECHCIDGREMCTLIACPTLS 50
C TC ++DG + W GC CH D + P L
Sbjct: 108 CWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTIGCYNCH--DDKSAELKSKVPYL- 164
Query: 51 CQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCT 102
S ++T + VC H E + W + D T
Sbjct: 165 ----DRGLSAAGFKTFAESTHQEKRSLVCAQCHVEFYFKKTEWKDDKGVDKT 212
>2cy3_A Cytochrome C3; electron transport (heme protein); HET: HEM; 1.70A
{Desulfomicrobium norvegicum} SCOP: a.138.1.1 PDB:
1w7o_A*
Length = 118
Score = 26.0 bits (56), Expect = 7.3
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 29 CRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKL 88
C +CH + + C T C + ++ H C+D H LK
Sbjct: 44 CVQCHHTLEADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQ--CIDCHKALKK 101
Query: 89 EGQHWTLNPCTDC 101
+ + C C
Sbjct: 102 DKKPTGPTACGKC 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 7.8
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 213 ERKALEKGDTPTPPSGNDSPESATNRQIRESL 244
E++AL+K + +SA I+ ++
Sbjct: 18 EKQALKKLQASLKLY---ADDSAPALAIKATM 46
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 26.7 bits (59), Expect = 9.1
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 118 AACSNPRPPEPGTCCPRC 135
A +NP PE C C
Sbjct: 23 ALMTNPVVPESKRFCWNC 40
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 26.8 bits (58), Expect = 9.3
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 31/114 (27%)
Query: 31 ECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEG 90
C + ++ C+ P C+ QC +C C+
Sbjct: 51 LVWCQNHKQ-CSKCLEP---CKESGDLRKHQCQSFCEPLFPKKSYE--CL---------- 94
Query: 91 QHWTLNPCTDCTCREGKVLCYSQ--QCPAAACSNPRPPEPGTCCPRCAGADEIT 142
+C K + + CP C C +E +
Sbjct: 95 ----------TSCEFLKYILLVKQGDCP---APEKASGFAAACVESCEVDNECS 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.466
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,185,800
Number of extensions: 250293
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 246
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)