RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10995
         (265 letters)



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 18/54 (33%)

Query: 82  FHGELKLEGQHWTLNPCTDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRC 135
             G+   +   W   PC  C C  G VLC    C             G CCP C
Sbjct: 12  QDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 65



 Score = 40.7 bits (95), Expect = 9e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 15 DGVWRDDSEIWR-DGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSS 72
          DG   +D ++W+ + CR C C  G  +C  I C  +           +CCP CP   ++
Sbjct: 13 DGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADLAA 71



 Score = 24.2 bits (52), Expect = 6.5
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 179 NGTLLHVGDTYFADPCTNCTCLHGGQKKCTASMC 212
           +G   +  D +  +PC  C C   G   C   +C
Sbjct: 13  DGQRYNDKDVWKPEPCRICVC-DTGTVLCDDIIC 45


>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
          protein, N-terminal domain {Escherichia coli [TaxId:
          562]}
          Length = 106

 Score = 27.2 bits (60), Expect = 0.76
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 18 WRDDSEIWRDGCRECHCIDGREMCTLIACPTLSCQHPI 55
           +D S  +R  CRE  C  G +   +     L+C  PI
Sbjct: 44 EKDPSLSFRRSCREGVC--GSDGLNMNGKNGLACITPI 79


>d2fgga1 d.50.5.1 (A:4-87) Hypothetical protein Rv2632c/MT2708
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 84

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 160 PSDLEIPRIGDE 171
           P+D  + +IGDE
Sbjct: 44  PADEPVAQIGDE 55


>d1ulib_ d.17.4.4 (B:) Biphenyl dioxygenase small subunit BphA2
           {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}
          Length = 177

 Score = 26.3 bits (57), Expect = 3.0
 Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 6/79 (7%)

Query: 30  RECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELK-- 87
            E   ++ R              + +P  +T+         S   E A   D    ++  
Sbjct: 22  WEAKLLNDRRFQEWFDLLAEDIHYFMPIRTTRIMRETAQEYSGAREYAHFDDNAQMMRGR 81

Query: 88  ----LEGQHWTLNPCTDCT 102
                    W+ NP +   
Sbjct: 82  LRKITSDVSWSENPASRTR 100


>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
           succinogenes [TaxId: 844]}
          Length = 471

 Score = 26.2 bits (57), Expect = 5.4
 Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 22/112 (19%)

Query: 6   CITC------ECQDEDGVWRDDSEIWRD---------GCRECHCIDGREMCTLIACPTLS 50
           C TC         ++DG     +  W           GC  CH  D +        P   
Sbjct: 94  CWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTIGCYNCH--DDKSAELKSKVP--- 148

Query: 51  CQHPIPANSTQCCPYCPDATSSGHEAAVCMDFHGELKLEGQHWTLNPCTDCT 102
             +     S        ++T     + VC   H E   +   W  +   D T
Sbjct: 149 --YLDRGLSAAGFKTFAESTHQEKRSLVCAQCHVEYYFKKTEWKDDKGVDKT 198


>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
           cress (Arabidopsis thaliana), mitochondrial isoform
           [TaxId: 3702]}
          Length = 161

 Score = 25.5 bits (55), Expect = 6.0
 Identities = 8/78 (10%), Positives = 19/78 (24%)

Query: 23  EIWRDGCRECHCIDGREMCTLIACPTLSCQHPIPANSTQCCPYCPDATSSGHEAAVCMDF 82
                       ++ R + T+ +    S      +           A +     ++    
Sbjct: 48  NAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIH 107

Query: 83  HGELKLEGQHWTLNPCTD 100
           HG   +       +P  D
Sbjct: 108 HGVAPMTLNVKNPDPIFD 125


>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 476

 Score = 25.9 bits (56), Expect = 6.8
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 126 PEPGTCCPRCAGADEITALVVEDPLRKESTPSLSPSDLEIPRIGDEYLSCL----LENGT 181
           P    C  R    +        D  R E T +L   DL + +  +  L+ +      + T
Sbjct: 353 PNHEHCFNRTLLRNSSGCEARRDEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLT 412

Query: 182 LLHVGDT 188
           + ++G +
Sbjct: 413 IANLGTS 419


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.466 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,087,971
Number of extensions: 56043
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 71
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)